Query psy15738
Match_columns 187
No_of_seqs 148 out of 1248
Neff 11.3
Searched_HMMs 46136
Date Fri Aug 16 20:07:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.9 1E-19 2.2E-24 143.1 18.2 120 65-185 390-514 (1051)
2 KOG3513|consensus 99.9 7.1E-20 1.5E-24 144.0 17.0 147 32-185 452-612 (1051)
3 KOG4194|consensus 99.8 5.2E-18 1.1E-22 126.3 11.5 119 65-186 578-705 (873)
4 PHA02826 IL-1 receptor-like pr 99.8 7.5E-17 1.6E-21 110.3 15.1 106 61-174 98-213 (227)
5 KOG4222|consensus 99.8 8.6E-18 1.9E-22 132.1 11.5 128 52-186 182-314 (1281)
6 cd05851 Ig3_Contactin-1 Third 99.8 2.7E-17 5.9E-22 96.7 11.0 79 105-184 8-87 (88)
7 cd05740 Ig_CEACAM_D4 Fourth im 99.7 9.3E-17 2E-21 94.8 10.9 83 102-185 7-91 (91)
8 KOG4221|consensus 99.7 2E-17 4.4E-22 130.7 10.2 151 27-184 258-415 (1381)
9 cd05730 Ig3_NCAM-1_like Third 99.7 1.1E-16 2.4E-21 95.6 11.2 80 107-187 12-95 (95)
10 cd05762 Ig8_MLCK Eighth immuno 99.7 1.7E-16 3.6E-21 95.1 11.4 82 104-186 6-92 (98)
11 cd04975 Ig4_SCFR_like Fourth i 99.7 1.4E-16 3E-21 95.6 11.0 80 106-186 11-101 (101)
12 cd05745 Ig3_Peroxidasin Third 99.7 4.9E-17 1.1E-21 92.6 8.6 72 112-184 1-74 (74)
13 PHA02785 IL-beta-binding prote 99.7 4E-16 8.7E-21 112.8 14.7 136 33-175 153-318 (326)
14 KOG4221|consensus 99.7 2.4E-16 5.1E-21 124.9 14.4 155 27-186 161-327 (1381)
15 cd05867 Ig4_L1-CAM_like Fourth 99.7 1.6E-16 3.6E-21 90.9 9.9 71 113-184 1-75 (76)
16 cd05863 Ig2_VEGFR-3 Second imm 99.7 8E-17 1.7E-21 89.1 8.1 67 116-186 1-67 (67)
17 PHA02785 IL-beta-binding prote 99.7 1.1E-15 2.4E-20 110.6 14.8 108 65-175 86-203 (326)
18 cd05859 Ig4_PDGFR-alpha Fourth 99.7 5.1E-16 1.1E-20 93.3 10.7 79 107-186 12-101 (101)
19 cd05864 Ig2_VEGFR-2 Second imm 99.7 2.2E-16 4.7E-21 88.4 8.3 68 117-185 2-69 (70)
20 cd05852 Ig5_Contactin-1 Fifth 99.7 2.5E-16 5.4E-21 89.1 8.6 71 113-184 1-73 (73)
21 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 5.8E-16 1.3E-20 90.5 10.2 77 107-184 4-86 (86)
22 cd05868 Ig4_NrCAM Fourth immun 99.7 3.8E-16 8.3E-21 89.3 9.0 72 113-185 1-76 (76)
23 cd05728 Ig4_Contactin-2-like F 99.7 6.5E-16 1.4E-20 90.3 9.9 79 105-184 6-85 (85)
24 cd04968 Ig3_Contactin_like Thi 99.7 1.4E-15 3.1E-20 89.5 11.4 80 105-185 8-88 (88)
25 KOG4194|consensus 99.7 8.4E-16 1.8E-20 114.8 12.5 123 60-185 668-796 (873)
26 cd05737 Ig_Myomesin_like_C C-t 99.7 8E-16 1.7E-20 91.3 10.1 79 105-184 8-92 (92)
27 cd05892 Ig_Myotilin_C C-termin 99.7 6.1E-16 1.3E-20 87.8 8.5 68 116-184 1-75 (75)
28 cd04978 Ig4_L1-NrCAM_like Four 99.7 1.2E-15 2.6E-20 87.4 9.3 71 113-184 1-75 (76)
29 cd05723 Ig4_Neogenin Fourth im 99.7 1.3E-15 2.7E-20 86.0 9.0 69 115-184 1-71 (71)
30 cd04976 Ig2_VEGFR Second immun 99.7 1.2E-15 2.5E-20 86.0 8.5 70 116-186 1-71 (71)
31 cd05747 Ig5_Titin_like M5, fif 99.7 3.4E-15 7.3E-20 88.6 10.7 84 96-182 3-91 (92)
32 cd04972 Ig_TrkABC_d4 Fourth do 99.7 2.3E-15 5E-20 89.0 9.8 77 107-184 9-90 (90)
33 cd05893 Ig_Palladin_C C-termin 99.6 1.3E-15 2.9E-20 86.5 7.9 68 116-184 1-75 (75)
34 cd05849 Ig1_Contactin-1 First 99.6 5.6E-15 1.2E-19 87.6 10.8 71 113-183 19-92 (93)
35 cd04969 Ig5_Contactin_like Fif 99.6 2.2E-15 4.7E-20 85.6 8.7 71 113-184 1-73 (73)
36 cd07693 Ig1_Robo First immunog 99.6 6.7E-15 1.5E-19 88.7 11.3 87 96-184 1-99 (100)
37 cd05869 Ig5_NCAM-1 Fifth immun 99.6 5.6E-15 1.2E-19 88.5 10.8 75 109-184 13-97 (97)
38 cd05724 Ig2_Robo Second immuno 99.6 5.7E-15 1.2E-19 86.6 10.5 79 106-184 4-86 (86)
39 cd05749 Ig2_Tyro3_like Second 99.6 2.4E-15 5.1E-20 86.6 8.6 75 105-182 5-80 (81)
40 cd05857 Ig2_FGFR Second immuno 99.6 3E-15 6.6E-20 87.6 9.2 76 108-184 4-85 (85)
41 cd05876 Ig3_L1-CAM Third immun 99.6 2E-15 4.2E-20 85.2 7.8 68 116-184 1-70 (71)
42 cd05850 Ig1_Contactin-2 First 99.6 1.3E-14 2.8E-19 86.3 11.7 71 113-183 19-93 (94)
43 cd05848 Ig1_Contactin-5 First 99.6 9E-15 1.9E-19 87.0 11.0 71 112-182 18-92 (94)
44 cd05725 Ig3_Robo Third immunog 99.6 2.9E-15 6.2E-20 84.1 8.3 68 116-184 1-69 (69)
45 cd05748 Ig_Titin_like Immunogl 99.6 4.9E-15 1.1E-19 84.3 9.3 69 115-184 1-74 (74)
46 cd05722 Ig1_Neogenin First imm 99.6 7.1E-15 1.5E-19 87.8 10.3 80 105-184 6-95 (95)
47 cd05735 Ig8_DSCAM Eight immuno 99.6 8.7E-15 1.9E-19 86.0 10.4 73 113-186 1-83 (88)
48 cd05870 Ig5_NCAM-2 Fifth immun 99.6 1.7E-14 3.7E-19 86.6 11.4 78 106-184 9-98 (98)
49 cd05773 Ig8_hNephrin_like Eigh 99.6 1.1E-14 2.3E-19 89.0 10.6 74 112-186 22-106 (109)
50 cd05865 Ig1_NCAM-1 First immun 99.6 9.3E-15 2E-19 87.0 9.9 78 107-185 9-96 (96)
51 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 5E-15 1.1E-19 84.2 8.4 69 116-184 1-73 (74)
52 cd05732 Ig5_NCAM-1_like Fifth 99.6 1.3E-14 2.8E-19 86.9 10.5 77 107-184 10-96 (96)
53 cd05760 Ig2_PTK7 Second immuno 99.6 8.7E-15 1.9E-19 83.9 9.1 70 116-185 1-75 (77)
54 cd05855 Ig_TrkB_d5 Fifth domai 99.6 7E-15 1.5E-19 83.9 8.6 66 117-183 2-77 (79)
55 cd05744 Ig_Myotilin_C_like Imm 99.6 8.5E-15 1.9E-19 83.4 8.9 68 116-184 1-75 (75)
56 cd04973 Ig1_FGFR First immunog 99.6 1.8E-14 3.9E-19 82.9 10.0 76 107-184 3-79 (79)
57 cd05891 Ig_M-protein_C C-termi 99.6 1.9E-14 4.1E-19 85.3 10.1 79 105-184 8-92 (92)
58 cd05746 Ig4_Peroxidasin Fourth 99.6 5.5E-15 1.2E-19 82.9 7.4 66 116-182 1-68 (69)
59 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 1.9E-14 4E-19 80.5 9.0 67 113-182 1-68 (69)
60 cd05731 Ig3_L1-CAM_like Third 99.6 1E-14 2.2E-19 82.4 7.9 68 116-184 1-70 (71)
61 cd05726 Ig4_Robo Fhird immunog 99.6 1.8E-14 3.9E-19 85.1 9.1 72 113-185 1-82 (90)
62 PF07679 I-set: Immunoglobulin 99.6 9.7E-15 2.1E-19 86.4 7.9 79 105-184 7-90 (90)
63 cd05764 Ig_2 Subgroup of the i 99.6 2.4E-14 5.1E-19 81.5 9.2 71 113-184 1-74 (74)
64 cd04974 Ig3_FGFR Third immunog 99.6 1.7E-14 3.8E-19 85.1 8.7 72 113-185 1-90 (90)
65 cd05763 Ig_1 Subgroup of the i 99.6 1.6E-14 3.4E-19 82.5 8.2 69 116-185 1-75 (75)
66 cd05856 Ig2_FGFRL1-like Second 99.6 2.1E-14 4.6E-19 83.4 8.7 75 109-184 5-82 (82)
67 cd05854 Ig6_Contactin-2 Sixth 99.6 4.7E-14 1E-18 82.2 10.0 73 114-187 1-84 (85)
68 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 2.5E-14 5.3E-19 82.5 8.7 66 117-183 2-79 (81)
69 cd05866 Ig1_NCAM-2 First immun 99.6 4.6E-14 1E-18 83.2 10.0 77 107-184 9-91 (92)
70 cd07702 Ig2_VEGFR-1 Second imm 99.6 2.8E-14 6.1E-19 80.0 8.1 60 116-175 1-62 (72)
71 cd05853 Ig6_Contactin-4 Sixth 99.6 5E-14 1.1E-18 81.5 9.1 73 114-187 1-84 (85)
72 cd05743 Ig_Perlecan_D2_like Im 99.6 3.5E-14 7.6E-19 81.6 8.1 69 113-182 1-74 (78)
73 cd05734 Ig7_DSCAM Seventh immu 99.6 4E-14 8.6E-19 81.6 8.2 69 116-184 1-79 (79)
74 cd04970 Ig6_Contactin_like Six 99.6 5.4E-14 1.2E-18 82.2 8.7 73 114-187 1-84 (85)
75 cd05858 Ig3_FGFR-2 Third immun 99.6 4.1E-14 8.8E-19 83.6 8.2 72 113-185 1-90 (90)
76 cd05733 Ig6_L1-CAM_like Sixth 99.5 6E-14 1.3E-18 80.4 8.1 67 116-182 1-76 (77)
77 cd05756 Ig1_IL1R_like First im 99.5 9.9E-14 2.2E-18 82.3 9.0 77 107-184 8-94 (94)
78 cd05765 Ig_3 Subgroup of the i 99.5 1.1E-13 2.4E-18 80.2 8.4 71 113-184 1-81 (81)
79 cd04967 Ig1_Contactin First Ig 99.5 3.9E-13 8.5E-18 79.6 10.2 67 113-179 19-89 (91)
80 cd05874 Ig6_NrCAM Sixth immuno 99.5 1.5E-13 3.2E-18 78.6 8.0 67 116-182 1-76 (77)
81 cd04977 Ig1_NCAM-1_like First 99.5 4.5E-13 9.9E-18 79.3 10.0 77 107-184 9-92 (92)
82 cd05758 Ig5_KIRREL3-like Fifth 99.5 9.2E-13 2E-17 79.1 11.3 76 106-182 9-97 (98)
83 cd04979 Ig_Semaphorin_C Immuno 99.5 4.9E-13 1.1E-17 78.8 9.9 79 106-185 4-87 (89)
84 cd05736 Ig2_Follistatin_like S 99.5 3.8E-13 8.3E-18 76.9 8.9 68 117-185 2-74 (76)
85 cd05875 Ig6_hNeurofascin_like 99.5 5.8E-13 1.3E-17 76.1 9.2 67 116-182 1-76 (77)
86 cd05752 Ig1_FcgammaR_like Frst 99.5 7.5E-13 1.6E-17 75.7 8.8 71 105-184 7-78 (78)
87 KOG4222|consensus 99.5 9.1E-13 2E-17 104.5 12.0 110 65-176 282-403 (1281)
88 cd05750 Ig_Pro_neuregulin Immu 99.5 3E-13 6.4E-18 77.2 7.0 64 116-180 1-73 (75)
89 cd05742 Ig1_VEGFR_like First i 99.5 6E-13 1.3E-17 77.6 8.3 71 113-184 1-83 (84)
90 cd05757 Ig2_IL1R_like Second i 99.5 1.6E-12 3.4E-17 76.7 9.4 77 108-185 5-87 (92)
91 cd05754 Ig3_Perlecan_like Thir 99.4 2.9E-12 6.2E-17 74.9 8.9 76 105-182 8-84 (85)
92 cd05873 Ig_Sema4D_like Immunog 99.4 3.1E-12 6.8E-17 74.3 8.7 67 105-172 3-71 (87)
93 cd05753 Ig2_FcgammaR_like Seco 99.4 2.9E-12 6.3E-17 74.3 7.9 74 108-184 9-83 (83)
94 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 7.8E-12 1.7E-16 72.7 9.4 73 113-185 1-83 (84)
95 cd05729 Ig2_FGFR_like Second i 99.4 1.4E-11 3.1E-16 71.8 9.9 76 108-184 4-85 (85)
96 cd05882 Ig1_Necl-1 First (N-te 99.4 1.2E-11 2.6E-16 73.4 9.5 76 107-184 6-95 (95)
97 cd05895 Ig_Pro_neuregulin-1 Im 99.3 7E-12 1.5E-16 71.6 6.7 65 116-181 1-75 (76)
98 cd05771 IgC_Tapasin_R Tapasin- 99.3 5.3E-11 1.1E-15 76.0 11.5 108 64-173 4-132 (139)
99 cd07701 Ig1_Necl-3 First (N-te 99.3 3.5E-11 7.6E-16 71.6 9.7 78 105-184 4-95 (95)
100 cd05871 Ig_Semaphorin_classIII 99.3 7.5E-11 1.6E-15 69.5 10.2 76 108-185 6-89 (91)
101 cd05898 Ig5_KIRREL3 Fifth immu 99.3 1.7E-10 3.6E-15 68.6 11.0 77 105-182 8-97 (98)
102 cd05727 Ig2_Contactin-2-like S 99.3 4.9E-11 1.1E-15 70.3 7.4 69 107-175 12-86 (96)
103 smart00408 IGc2 Immunoglobulin 99.2 1.5E-10 3.2E-15 63.2 8.9 62 112-173 1-63 (63)
104 PF13895 Ig_2: Immunoglobulin 99.2 1.3E-10 2.8E-15 66.8 8.9 72 108-184 9-80 (80)
105 cd05897 Ig2_IL1R2_like Second 99.2 1.4E-10 3.1E-15 68.4 8.1 77 108-184 5-93 (95)
106 cd05717 Ig1_Necl-1-3_like Firs 99.2 6E-10 1.3E-14 66.4 9.9 77 106-184 5-95 (95)
107 cd05862 Ig1_VEGFR First immuno 99.2 4.8E-10 1E-14 65.4 8.4 72 113-185 1-85 (86)
108 cd05845 Ig2_L1-CAM_like Second 99.1 3.8E-10 8.1E-15 66.5 7.1 70 106-175 11-85 (95)
109 cd05860 Ig4_SCFR Fourth immuno 99.1 3.1E-09 6.8E-14 62.9 10.5 78 107-185 12-100 (101)
110 cd05885 Ig2_Necl-4 Second immu 99.1 2.1E-09 4.6E-14 61.2 9.1 61 115-175 1-69 (80)
111 cd07690 Ig1_CD4 First immunogl 99.1 8.6E-10 1.9E-14 65.2 6.7 67 109-175 3-91 (94)
112 cd05892 Ig_Myotilin_C C-termin 99.1 4.8E-10 1E-14 63.6 5.4 66 2-93 8-75 (75)
113 PF00047 ig: Immunoglobulin do 99.0 5.9E-10 1.3E-14 61.3 5.1 56 113-168 1-64 (64)
114 smart00410 IG_like Immunoglobu 99.0 2.5E-08 5.4E-13 57.6 11.5 76 108-184 4-85 (86)
115 smart00409 IG Immunoglobulin. 99.0 2.5E-08 5.4E-13 57.6 11.5 76 108-184 4-85 (86)
116 cd05896 Ig1_IL1RAPL-1_like Fir 99.0 8.8E-09 1.9E-13 61.2 8.9 75 108-183 10-103 (104)
117 cd05872 Ig_Sema4B_like Immunog 99.0 1.2E-08 2.5E-13 59.0 9.2 62 107-169 5-67 (85)
118 cd05883 Ig2_Necl-2 Second immu 99.0 2.2E-08 4.8E-13 57.2 9.4 72 116-187 2-82 (82)
119 PHA02826 IL-1 receptor-like pr 98.9 7.2E-09 1.6E-13 71.3 8.1 77 107-184 31-132 (227)
120 cd05751 Ig1_LILRB1_like First 98.9 1.3E-08 2.8E-13 60.1 7.9 76 108-184 11-90 (91)
121 cd05759 Ig2_KIRREL3-like Secon 98.9 2.1E-08 4.6E-13 58.0 8.7 68 116-183 2-81 (82)
122 cd05893 Ig_Palladin_C C-termin 98.9 3.4E-09 7.4E-14 60.1 4.9 66 2-93 8-75 (75)
123 cd05855 Ig_TrkB_d5 Fifth domai 98.9 3.1E-09 6.8E-14 60.6 4.7 70 2-94 8-77 (79)
124 cd05744 Ig_Myotilin_C_like Imm 98.9 7.8E-09 1.7E-13 58.7 5.6 65 2-92 8-74 (75)
125 cd05852 Ig5_Contactin-1 Fifth 98.9 5.7E-09 1.2E-13 58.9 4.5 60 2-92 11-72 (73)
126 cd05853 Ig6_Contactin-4 Sixth 98.8 3.4E-08 7.4E-13 57.2 6.9 34 64-97 50-85 (85)
127 cd05745 Ig3_Peroxidasin Third 98.8 1.4E-08 3.1E-13 57.5 5.2 61 2-93 12-74 (74)
128 cd05723 Ig4_Neogenin Fourth im 98.8 2.4E-08 5.1E-13 56.1 5.9 60 2-92 9-70 (71)
129 cd04971 Ig_TrKABC_d5 Fifth dom 98.8 2.1E-08 4.6E-13 57.7 5.8 73 2-95 8-80 (81)
130 cd04970 Ig6_Contactin_like Six 98.8 2E-08 4.3E-13 58.5 5.7 33 65-97 51-85 (85)
131 cd05741 Ig_CEACAM_D1_like Firs 98.8 6.3E-08 1.4E-12 57.2 7.8 72 113-184 1-92 (92)
132 PF13927 Ig_3: Immunoglobulin 98.8 1.7E-08 3.6E-13 57.1 4.7 56 114-170 16-75 (75)
133 cd05854 Ig6_Contactin-2 Sixth 98.8 3.1E-08 6.7E-13 57.6 5.9 33 65-97 51-85 (85)
134 cd05774 Ig_CEACAM_D1 First imm 98.8 9.6E-08 2.1E-12 57.7 8.0 77 108-184 8-105 (105)
135 cd05859 Ig4_PDGFR-alpha Fourth 98.7 8.7E-08 1.9E-12 57.6 6.2 30 65-94 69-100 (101)
136 cd05714 Ig_CSPGs_LP Immunoglob 98.7 3.2E-07 7E-12 55.7 8.8 73 112-185 1-103 (106)
137 cd04975 Ig4_SCFR_like Fourth i 98.7 1.1E-07 2.3E-12 57.1 6.4 31 64-94 68-100 (101)
138 cd05748 Ig_Titin_like Immunogl 98.7 8.9E-08 1.9E-12 54.2 5.4 63 2-92 9-73 (74)
139 cd05894 Ig_C5_MyBP-C C5 immuno 98.6 1.2E-07 2.6E-12 55.3 5.9 28 64-91 55-82 (86)
140 cd04983 IgV_TCR_alpha_like Imm 98.6 3.7E-07 8.1E-12 55.7 8.1 68 105-172 5-93 (109)
141 cd05737 Ig_Myomesin_like_C C-t 98.6 1.1E-07 2.4E-12 56.2 5.5 31 63-93 60-90 (92)
142 cd05867 Ig4_L1-CAM_like Fourth 98.6 8.9E-08 1.9E-12 54.5 4.9 63 2-93 11-75 (76)
143 cd05900 Ig_Aggrecan Immunoglob 98.6 1.1E-06 2.5E-11 53.6 10.0 73 112-185 1-109 (112)
144 cd05881 Ig1_Necl-2 First (N-te 98.6 1E-06 2.2E-11 52.1 9.4 65 107-171 6-84 (95)
145 cd05877 Ig_LP_like Immunoglobu 98.6 5.5E-07 1.2E-11 54.7 8.7 73 112-185 1-103 (106)
146 cd05899 IgV_TCR_beta Immunoglo 98.6 5.2E-07 1.1E-11 55.2 8.4 67 105-172 5-95 (110)
147 cd05746 Ig4_Peroxidasin Fourth 98.6 1E-07 2.2E-12 53.1 4.6 51 2-83 8-58 (69)
148 cd05726 Ig4_Robo Fhird immunog 98.6 3.5E-07 7.7E-12 53.8 6.9 72 2-96 11-84 (90)
149 cd05738 Ig2_RPTP_IIa_LAR_like 98.6 7.7E-08 1.7E-12 54.5 3.8 63 2-93 8-73 (74)
150 cd05735 Ig8_DSCAM Eight immuno 98.6 3E-07 6.6E-12 53.8 6.4 34 65-98 51-86 (88)
151 cd05868 Ig4_NrCAM Fourth immun 98.6 1.5E-07 3.2E-12 53.6 4.8 63 2-93 11-75 (76)
152 cd07702 Ig2_VEGFR-1 Second imm 98.6 1.4E-07 3.1E-12 52.8 4.5 18 2-19 8-25 (72)
153 cd05725 Ig3_Robo Third immunog 98.6 2.2E-07 4.8E-12 51.8 5.2 29 64-92 38-68 (69)
154 cd05876 Ig3_L1-CAM Third immun 98.6 1.8E-07 3.8E-12 52.5 4.7 61 2-93 8-70 (71)
155 cd05879 Ig_P0 Immunoglobulin ( 98.6 1.4E-06 3.1E-11 53.6 9.1 69 107-175 7-106 (116)
156 cd04969 Ig5_Contactin_like Fif 98.5 1.9E-07 4E-12 52.7 4.8 59 3-92 12-72 (73)
157 cd05863 Ig2_VEGFR-3 Second imm 98.5 1.2E-07 2.6E-12 52.4 3.6 18 2-19 8-25 (67)
158 cd05880 Ig_EVA1 Immunoglobulin 98.5 2.5E-06 5.4E-11 52.6 9.7 79 105-183 5-114 (115)
159 cd04974 Ig3_FGFR Third immunog 98.5 2.1E-07 4.6E-12 54.8 4.6 30 64-93 58-89 (90)
160 cd05718 Ig1_PVR_like First imm 98.5 1.4E-06 2.9E-11 52.1 8.0 71 114-185 1-98 (98)
161 cd05715 Ig_P0-like Immunoglobu 98.5 4.3E-06 9.2E-11 51.6 10.1 79 105-183 5-115 (116)
162 cd05711 Ig_FcalphaRI Immunoglo 98.5 2.2E-06 4.9E-11 50.8 8.4 76 108-184 10-94 (94)
163 cd04978 Ig4_L1-NrCAM_like Four 98.5 3.9E-07 8.4E-12 51.8 5.0 63 2-93 11-75 (76)
164 cd05763 Ig_1 Subgroup of the i 98.5 8.1E-07 1.8E-11 50.3 6.1 30 64-93 43-74 (75)
165 cd05761 Ig2_Necl-1-4_like Seco 98.5 3.4E-06 7.3E-11 48.7 8.8 59 116-174 2-70 (82)
166 cd05865 Ig1_NCAM-1 First immun 98.5 7.7E-07 1.7E-11 53.0 6.1 32 62-93 61-95 (96)
167 cd05775 Ig_SLAM-CD84_like_N N- 98.5 1.1E-06 2.3E-11 52.5 6.6 73 112-184 3-96 (97)
168 cd05857 Ig2_FGFR Second immuno 98.5 1.1E-06 2.3E-11 51.1 6.5 29 65-93 55-85 (85)
169 PHA03376 BARF1; Provisional 98.4 8.2E-06 1.8E-10 53.4 10.6 89 47-138 74-164 (221)
170 cd05713 Ig_MOG_like Immunoglob 98.4 3.8E-06 8.3E-11 50.4 8.8 35 149-184 65-99 (100)
171 cd05878 Ig_Aggrecan_like Immun 98.4 4E-06 8.7E-11 51.2 8.9 72 113-185 2-107 (110)
172 cd05864 Ig2_VEGFR-2 Second imm 98.4 4.4E-07 9.6E-12 50.6 4.2 18 2-19 8-25 (70)
173 cd00099 IgV Immunoglobulin var 98.4 1.5E-06 3.2E-11 52.6 6.5 65 109-173 2-91 (105)
174 cd04980 IgV_L_kappa Immunoglob 98.4 4.3E-06 9.3E-11 50.8 8.4 67 105-171 7-93 (106)
175 cd05730 Ig3_NCAM-1_like Third 98.4 1.3E-06 2.7E-11 52.0 5.9 31 64-94 61-93 (95)
176 cd05762 Ig8_MLCK Eighth immuno 98.4 4.6E-06 1E-10 49.8 8.1 36 63-98 58-95 (98)
177 cd05846 Ig1_MRC-OX-2_like Firs 98.4 5.8E-06 1.3E-10 49.3 8.5 72 113-185 1-97 (97)
178 cd07705 Ig2_Necl-1 Second immu 98.4 9.7E-06 2.1E-10 46.9 9.1 60 116-175 2-72 (83)
179 cd05724 Ig2_Robo Second immuno 98.3 1.7E-06 3.8E-11 50.3 5.6 29 64-92 54-85 (86)
180 cd04976 Ig2_VEGFR Second immun 98.3 1.1E-06 2.4E-11 49.2 4.5 18 2-19 8-25 (71)
181 cd05886 Ig1_Nectin-1_like Firs 98.3 1.3E-05 2.8E-10 47.9 9.3 36 149-185 63-99 (99)
182 cd05891 Ig_M-protein_C C-termi 98.3 1.6E-06 3.5E-11 51.2 5.2 31 63-93 60-90 (92)
183 cd05736 Ig2_Follistatin_like S 98.3 2E-06 4.3E-11 48.8 5.4 65 2-94 8-74 (76)
184 cd05731 Ig3_L1-CAM_like Third 98.3 1.2E-06 2.6E-11 49.0 4.3 29 65-93 40-70 (71)
185 cd05760 Ig2_PTK7 Second immuno 98.3 2.9E-06 6.2E-11 48.3 5.7 18 2-19 8-25 (77)
186 cd05901 Ig_Versican Immunoglob 98.3 1.5E-05 3.3E-10 48.8 9.0 37 148-185 78-114 (117)
187 cd05773 Ig8_hNephrin_like Eigh 98.3 7.6E-06 1.7E-10 49.9 7.8 33 65-97 73-108 (109)
188 cd05888 Ig1_Nectin-4_like Frst 98.3 1.8E-05 3.9E-10 47.5 9.1 36 148-184 63-99 (100)
189 cd05764 Ig_2 Subgroup of the i 98.3 4.3E-06 9.3E-11 47.2 6.1 28 65-92 44-73 (74)
190 cd05750 Ig_Pro_neuregulin Immu 98.3 3.1E-06 6.7E-11 47.8 5.5 18 2-19 8-26 (75)
191 cd04982 IgV_TCR_gamma Immunogl 98.3 8.9E-06 1.9E-10 50.2 7.9 66 105-170 5-98 (116)
192 cd05887 Ig1_Nectin-3_like Firs 98.2 3.2E-05 6.9E-10 45.9 9.4 37 148-185 59-96 (96)
193 cd04984 IgV_L_lambda Immunoglo 98.2 1.1E-05 2.3E-10 48.2 7.5 63 109-171 2-85 (98)
194 cd00098 IgC Immunoglobulin Con 98.2 5.9E-06 1.3E-10 49.0 6.3 64 111-174 11-87 (95)
195 cd05722 Ig1_Neogenin First imm 98.2 5.1E-06 1.1E-10 49.4 6.0 18 2-19 24-41 (95)
196 cd05734 Ig7_DSCAM Seventh immu 98.2 2.7E-06 5.8E-11 48.7 4.5 29 65-93 48-79 (79)
197 cd05882 Ig1_Necl-1 First (N-te 98.2 4.5E-06 9.8E-11 49.5 5.5 32 61-92 62-94 (95)
198 cd05858 Ig3_FGFR-2 Third immun 98.2 5.6E-06 1.2E-10 48.7 5.9 31 63-93 57-89 (90)
199 PHA02987 Ig domain OX-2-like p 98.2 3.6E-05 7.8E-10 50.5 9.7 79 107-185 24-122 (189)
200 cd05895 Ig_Pro_neuregulin-1 Im 98.2 5.8E-06 1.3E-10 46.9 5.4 21 63-83 46-66 (76)
201 cd05755 Ig2_ICAM-1_like Second 98.2 2.7E-05 5.8E-10 46.4 8.1 66 109-175 12-88 (100)
202 cd05902 Ig_Neurocan Immunoglob 98.2 2.9E-05 6.4E-10 47.3 8.5 36 149-185 72-107 (110)
203 cd05747 Ig5_Titin_like M5, fif 98.2 7.3E-06 1.6E-10 48.4 5.8 27 64-90 62-88 (92)
204 cd05756 Ig1_IL1R_like First im 98.2 5.2E-06 1.1E-10 49.2 5.1 22 63-84 62-83 (94)
205 PF07686 V-set: Immunoglobulin 98.2 5.3E-06 1.1E-10 50.7 5.3 79 106-184 9-114 (114)
206 cd05856 Ig2_FGFRL1-like Second 98.2 2.2E-06 4.7E-11 49.3 3.3 27 65-91 52-78 (82)
207 cd07693 Ig1_Robo First immunog 98.2 1.2E-05 2.6E-10 48.0 6.7 25 69-93 72-99 (100)
208 cd05850 Ig1_Contactin-2 First 98.2 8.2E-06 1.8E-10 48.4 5.8 17 65-81 62-79 (94)
209 cd05884 Ig2_Necl-3 Second immu 98.2 5.1E-05 1.1E-09 43.8 8.8 59 116-174 2-71 (83)
210 cd05765 Ig_3 Subgroup of the i 98.1 1.1E-05 2.5E-10 46.2 5.7 28 65-92 51-80 (81)
211 cd00096 Ig Immunoglobulin doma 98.1 2.2E-05 4.7E-10 43.0 6.7 57 116-172 1-66 (74)
212 cd05732 Ig5_NCAM-1_like Fifth 98.1 9.3E-06 2E-10 48.3 5.1 31 62-92 63-95 (96)
213 cd05885 Ig2_Necl-4 Second immu 98.1 1.8E-05 3.9E-10 45.2 5.9 17 3-19 11-27 (80)
214 cd05757 Ig2_IL1R_like Second i 98.1 1.9E-05 4.2E-10 46.5 6.3 16 4-19 27-42 (92)
215 cd07694 Ig2_CD4 Second immunog 98.1 6.8E-05 1.5E-09 43.1 8.2 62 109-171 10-73 (88)
216 cd05716 Ig_pIgR Immunoglobulin 98.0 5.8E-05 1.3E-09 45.0 7.9 65 108-172 2-87 (98)
217 cd05870 Ig5_NCAM-2 Fifth immun 98.0 3.5E-05 7.5E-10 46.0 6.8 31 63-93 66-98 (98)
218 cd07691 Ig_CD3_gamma_delta Imm 98.0 4.5E-05 9.9E-10 41.5 5.6 61 113-187 6-66 (69)
219 cd07700 IgV_CD8_beta Immunoglo 97.9 8.1E-05 1.8E-09 45.2 7.3 62 109-170 2-93 (107)
220 cd05874 Ig6_NrCAM Sixth immuno 97.9 3.1E-05 6.7E-10 44.1 5.1 17 2-18 8-24 (77)
221 cd05851 Ig3_Contactin-1 Third 97.9 5.7E-05 1.2E-09 44.1 6.4 30 64-93 56-87 (88)
222 cd05897 Ig2_IL1R2_like Second 97.9 4.2E-05 9.2E-10 45.2 5.7 17 3-19 26-42 (95)
223 cd05733 Ig6_L1-CAM_like Sixth 97.9 3.8E-05 8.1E-10 43.7 5.1 18 2-19 8-25 (77)
224 cd07706 IgV_TCR_delta Immunogl 97.9 9.5E-05 2.1E-09 45.6 7.2 67 105-171 6-94 (116)
225 PF07679 I-set: Immunoglobulin 97.9 0.00013 2.7E-09 42.7 7.0 33 60-92 55-89 (90)
226 cd05848 Ig1_Contactin-5 First 97.8 4.9E-05 1.1E-09 45.0 5.0 19 65-83 62-81 (94)
227 cd05869 Ig5_NCAM-1 Fifth immun 97.8 0.00018 3.9E-09 42.8 7.4 30 63-92 65-96 (97)
228 cd05729 Ig2_FGFR_like Second i 97.8 0.00018 4E-09 41.4 7.2 28 65-92 55-84 (85)
229 cd05712 Ig_Siglec_N Immunoglob 97.8 0.0004 8.6E-09 43.1 8.7 67 105-171 6-102 (119)
230 cd05849 Ig1_Contactin-1 First 97.8 9.3E-05 2E-09 43.7 5.5 17 65-81 61-78 (93)
231 cd05739 Ig3_RPTP_IIa_LAR_like 97.8 5.5E-05 1.2E-09 42.0 4.3 18 2-19 11-28 (69)
232 KOG3515|consensus 97.8 2.4E-05 5.2E-10 61.8 3.7 78 109-186 18-96 (741)
233 cd05875 Ig6_hNeurofascin_like 97.8 9E-05 2E-09 42.1 5.2 18 1-18 7-24 (77)
234 cd07698 IgC_MHC_I_alpha3 Class 97.8 0.00049 1.1E-08 40.6 8.4 61 113-173 14-84 (93)
235 cd05742 Ig1_VEGFR_like First i 97.8 4.4E-05 9.5E-10 44.2 3.8 29 65-93 53-83 (84)
236 PF08205 C2-set_2: CD80-like C 97.7 0.00018 3.9E-09 42.0 6.3 62 113-174 14-86 (89)
237 cd05772 IgC_SIRP Signal-regula 97.7 0.00064 1.4E-08 41.5 8.8 62 110-172 18-92 (111)
238 cd07692 Ig_CD3_epsilon Immunog 97.7 0.00023 5.1E-09 38.5 6.0 52 110-170 4-55 (65)
239 cd05728 Ig4_Contactin-2-like F 97.7 0.00018 3.9E-09 41.7 6.0 23 65-87 55-77 (85)
240 cd05743 Ig_Perlecan_D2_like Im 97.7 5.9E-05 1.3E-09 43.0 3.7 18 2-19 11-28 (78)
241 smart00407 IGc1 Immunoglobulin 97.7 0.00047 1E-08 38.9 7.4 57 116-172 2-71 (75)
242 cd05873 Ig_Sema4D_like Immunog 97.7 9.2E-05 2E-09 43.1 4.5 20 64-83 51-70 (87)
243 cd05740 Ig_CEACAM_D4 Fourth im 97.7 0.00023 4.9E-09 41.9 6.0 63 27-93 24-90 (91)
244 cd04972 Ig_TrkABC_d4 Fourth do 97.7 0.00039 8.4E-09 40.7 7.0 30 63-92 58-89 (90)
245 cd05889 Ig1_DNAM-1_like First 97.7 0.00095 2.1E-08 39.6 8.5 34 148-182 59-93 (96)
246 cd04968 Ig3_Contactin_like Thi 97.6 0.00024 5.1E-09 41.4 5.6 29 65-93 57-87 (88)
247 cd05720 Ig_CD8_alpha Immunoglo 97.6 0.00023 5.1E-09 43.0 5.7 61 110-170 3-90 (104)
248 cd04977 Ig1_NCAM-1_like First 97.6 0.00045 9.7E-09 40.7 6.6 65 27-92 21-91 (92)
249 cd05866 Ig1_NCAM-2 First immun 97.6 0.00052 1.1E-08 40.4 6.6 65 27-93 21-91 (92)
250 cd04967 Ig1_Contactin First Ig 97.6 0.0002 4.3E-09 42.1 4.6 18 65-82 62-80 (91)
251 cd05759 Ig2_KIRREL3-like Secon 97.5 0.00051 1.1E-08 39.4 6.1 16 4-19 12-27 (82)
252 cd07701 Ig1_Necl-3 First (N-te 97.5 0.00045 9.6E-09 41.0 5.8 33 61-93 62-95 (95)
253 KOG1480|consensus 97.5 2.3E-05 5E-10 61.4 0.1 84 102-185 133-219 (909)
254 cd04973 Ig1_FGFR First immunog 97.5 0.00033 7E-09 40.0 4.8 30 64-93 48-77 (79)
255 cd05758 Ig5_KIRREL3-like Fifth 97.5 0.00034 7.4E-09 41.7 5.1 20 64-83 67-87 (98)
256 cd04979 Ig_Semaphorin_C Immuno 97.5 0.00031 6.8E-09 41.0 4.8 32 63-94 53-87 (89)
257 KOG3515|consensus 97.4 0.0017 3.8E-08 51.8 9.6 138 27-171 28-185 (741)
258 cd05719 Ig2_PVR_like Second im 97.4 0.0025 5.5E-08 37.7 7.5 62 114-175 16-85 (95)
259 cd04981 IgV_H Immunoglobulin ( 97.3 0.0017 3.7E-08 40.1 7.0 66 105-170 4-97 (117)
260 cd05845 Ig2_L1-CAM_like Second 97.3 0.00068 1.5E-08 40.1 4.8 23 61-83 58-81 (95)
261 cd07699 IgC_L Immunoglobulin C 97.3 0.00099 2.1E-08 39.9 5.6 63 111-173 15-90 (100)
262 cd05871 Ig_Semaphorin_classIII 97.3 0.0017 3.8E-08 38.1 6.4 32 63-94 55-89 (91)
263 cd05774 Ig_CEACAM_D1 First imm 97.3 0.0014 3E-08 39.6 6.0 43 46-92 59-104 (105)
264 cd05768 IgC_CH4 CH4 domain (fo 97.3 0.0011 2.5E-08 39.8 5.6 63 111-173 14-92 (102)
265 cd05769 IgC_TCR_beta T cell re 97.3 0.0023 5.1E-08 39.3 6.9 64 112-175 17-95 (115)
266 cd05886 Ig1_Nectin-1_like Firs 97.3 0.0036 7.8E-08 37.4 7.5 48 47-94 49-99 (99)
267 cd05727 Ig2_Contactin-2-like S 97.3 0.00077 1.7E-08 39.9 4.5 22 62-83 61-82 (96)
268 cd05741 Ig_CEACAM_D1_like Firs 97.3 0.0011 2.5E-08 38.8 5.3 28 47-78 47-74 (92)
269 cd05900 Ig_Aggrecan Immunoglob 97.2 0.0056 1.2E-07 37.5 8.4 47 47-93 58-108 (112)
270 cd05883 Ig2_Necl-2 Second immu 97.2 0.0022 4.8E-08 36.8 6.1 18 3-20 11-28 (82)
271 cd07703 Ig2_Nectin-2_like Seco 97.2 0.0043 9.4E-08 36.7 7.4 62 114-175 16-85 (95)
272 cd05749 Ig2_Tyro3_like Second 97.2 0.0006 1.3E-08 39.1 3.5 18 2-19 23-41 (81)
273 cd05766 IgC_MHC_II_beta Class 97.2 0.0047 1E-07 36.5 7.4 63 111-173 12-84 (94)
274 cd05861 Ig1_PDGFR-alphabeta Fr 97.2 0.0028 6E-08 36.6 6.2 32 63-94 48-83 (84)
275 cd05770 IgC_beta2m Class I maj 97.2 0.0065 1.4E-07 35.8 7.7 60 112-172 14-83 (93)
276 cd05767 IgC_MHC_II_alpha Class 97.1 0.0062 1.3E-07 36.0 7.6 58 112-172 14-84 (94)
277 cd05847 IgC_CH2_IgE CH2 domain 97.1 0.0035 7.7E-08 37.0 6.5 63 112-174 13-88 (94)
278 cd05878 Ig_Aggrecan_like Immun 97.1 0.0033 7.2E-08 38.4 6.6 48 47-94 56-107 (110)
279 PHA02633 hypothetical protein; 97.1 0.0025 5.3E-08 34.0 4.9 37 148-185 17-53 (63)
280 PHA02987 Ig domain OX-2-like p 97.1 0.0057 1.2E-07 40.5 7.6 49 49-97 73-125 (189)
281 cd05877 Ig_LP_like Immunoglobu 97.1 0.0029 6.4E-08 38.2 6.0 47 48-94 55-103 (106)
282 cd05902 Ig_Neurocan Immunoglob 97.1 0.0062 1.3E-07 37.1 7.3 49 46-94 55-107 (110)
283 cd05752 Ig1_FcgammaR_like Frst 97.1 0.0029 6.2E-08 36.0 5.4 28 65-93 51-78 (78)
284 cd05717 Ig1_Necl-1-3_like Firs 97.0 0.011 2.4E-07 34.9 8.0 31 62-92 63-94 (95)
285 smart00406 IGv Immunoglobulin 97.0 0.0031 6.6E-08 35.8 5.4 19 149-167 62-80 (81)
286 PF07654 C1-set: Immunoglobuli 97.0 0.0057 1.2E-07 35.2 6.5 59 112-173 7-78 (83)
287 cd05881 Ig1_Necl-2 First (N-te 97.0 0.005 1.1E-07 36.5 6.2 31 48-78 49-79 (95)
288 cd07696 IgC_CH3 CH3 domain (th 97.0 0.0065 1.4E-07 36.1 6.6 64 110-173 11-87 (96)
289 cd05713 Ig_MOG_like Immunoglob 96.9 0.013 2.9E-07 34.8 7.9 34 60-93 64-99 (100)
290 cd05714 Ig_CSPGs_LP Immunoglob 96.9 0.0073 1.6E-07 36.5 6.5 36 59-94 66-103 (106)
291 cd05846 Ig1_MRC-OX-2_like Firs 96.9 0.0094 2E-07 35.4 6.8 45 49-93 49-96 (97)
292 cd05761 Ig2_Necl-1-4_like Seco 96.8 0.0058 1.3E-07 35.1 5.4 17 3-19 11-27 (82)
293 cd05896 Ig1_IL1RAPL-1_like Fir 96.7 0.0082 1.8E-07 36.0 5.7 31 61-91 70-100 (104)
294 cd05860 Ig4_SCFR Fourth immuno 96.7 0.012 2.5E-07 35.2 6.1 29 65-93 69-97 (101)
295 cd07704 Ig2_Nectin-3-4_like Se 96.7 0.047 1E-06 32.4 8.6 67 107-173 10-85 (97)
296 cd05901 Ig_Versican Immunoglob 96.7 0.019 4E-07 35.4 7.1 49 46-94 62-114 (117)
297 cd05889 Ig1_DNAM-1_like First 96.7 0.0055 1.2E-07 36.4 4.7 47 47-93 46-93 (96)
298 cd07705 Ig2_Necl-1 Second immu 96.7 0.0098 2.1E-07 34.2 5.6 17 3-19 11-27 (83)
299 smart00408 IGc2 Immunoglobulin 96.6 0.0069 1.5E-07 32.0 4.6 17 65-81 43-59 (63)
300 PHA03376 BARF1; Provisional 96.6 0.017 3.7E-07 38.4 6.9 66 107-172 20-110 (221)
301 cd05775 Ig_SLAM-CD84_like_N N- 96.5 0.0099 2.2E-07 35.3 5.2 31 63-93 63-96 (97)
302 cd05887 Ig1_Nectin-3_like Firs 96.4 0.0088 1.9E-07 35.5 4.5 47 47-93 46-95 (96)
303 cd07697 IgC_TCR_gamma T cell r 96.4 0.072 1.6E-06 31.6 8.1 58 112-171 15-84 (96)
304 KOG4597|consensus 96.2 0.0087 1.9E-07 45.0 4.4 76 108-184 206-291 (560)
305 cd05753 Ig2_FcgammaR_like Seco 96.2 0.012 2.6E-07 33.8 4.2 31 63-93 50-83 (83)
306 cd05754 Ig3_Perlecan_like Thir 96.2 0.0076 1.6E-07 34.7 3.4 23 65-87 56-78 (85)
307 cd05872 Ig_Sema4B_like Immunog 96.1 0.028 6E-07 32.5 5.3 18 63-80 49-66 (85)
308 cd07689 Ig2_VCAM-1 Second immu 96.1 0.048 1.1E-06 32.3 6.3 63 110-173 12-87 (99)
309 cd04985 IgC_CH1 CH1 domain (fi 96.0 0.044 9.6E-07 32.4 6.1 60 112-172 15-87 (95)
310 PHA03270 envelope glycoprotein 96.0 0.2 4.4E-06 37.6 10.4 75 63-141 184-265 (466)
311 cd05718 Ig1_PVR_like First imm 96.0 0.02 4.4E-07 33.8 4.6 45 49-93 50-97 (98)
312 PF13895 Ig_2: Immunoglobulin 95.9 0.069 1.5E-06 29.8 6.6 57 27-93 20-80 (80)
313 smart00410 IG_like Immunoglobu 95.9 0.13 2.8E-06 28.7 8.2 53 28-81 16-71 (86)
314 smart00409 IG Immunoglobulin. 95.9 0.13 2.8E-06 28.7 8.2 53 28-81 16-71 (86)
315 cd07690 Ig1_CD4 First immunogl 95.9 0.035 7.6E-07 32.8 5.1 23 61-83 65-87 (94)
316 cd04986 IgC_CH2 CH2 domain (se 95.8 0.048 1E-06 32.5 5.6 64 110-173 16-90 (99)
317 PF00047 ig: Immunoglobulin do 95.8 0.02 4.4E-07 30.8 3.9 17 63-79 47-63 (64)
318 PHA02633 hypothetical protein; 95.8 0.033 7.1E-07 29.8 4.2 35 60-94 17-53 (63)
319 cd05888 Ig1_Nectin-4_like Frst 95.8 0.03 6.6E-07 33.4 4.7 35 59-93 62-99 (100)
320 PHA03269 envelope glycoprotein 95.7 0.084 1.8E-06 40.2 7.6 77 61-141 289-373 (566)
321 PHA03271 envelope glycoprotein 95.7 0.47 1E-05 35.7 11.0 79 59-141 205-291 (490)
322 cd05721 IgV_CTLA-4 Immunoglobu 95.5 0.12 2.6E-06 31.7 6.5 64 107-170 7-95 (115)
323 PF08204 V-set_CD47: CD47 immu 95.4 0.03 6.6E-07 35.0 3.8 71 112-184 26-119 (130)
324 PHA03273 envelope glycoprotein 95.3 0.39 8.4E-06 36.6 9.8 103 63-169 200-322 (486)
325 cd05879 Ig_P0 Immunoglobulin ( 95.3 0.1 2.2E-06 32.2 5.9 20 59-78 78-97 (116)
326 PF11465 Receptor_2B4: Natural 95.2 0.061 1.3E-06 32.2 4.5 39 147-185 69-107 (108)
327 cd00098 IgC Immunoglobulin Con 95.2 0.078 1.7E-06 31.1 5.2 14 6-19 29-42 (95)
328 PHA03042 CD47-like protein; Pr 95.1 0.13 2.9E-06 36.1 6.5 68 112-182 30-102 (286)
329 PF07354 Sp38: Zona-pellucida- 95.0 0.062 1.3E-06 37.6 4.7 47 126-172 11-60 (271)
330 cd05884 Ig2_Necl-3 Second immu 95.0 0.13 2.9E-06 29.5 5.4 17 3-19 11-27 (83)
331 cd05862 Ig1_VEGFR First immuno 94.8 0.051 1.1E-06 31.5 3.4 31 64-94 53-85 (86)
332 cd05880 Ig_EVA1 Immunoglobulin 94.3 0.36 7.7E-06 29.6 6.6 19 60-78 78-96 (115)
333 cd04982 IgV_TCR_gamma Immunogl 94.2 0.15 3.3E-06 31.2 4.8 32 49-80 64-96 (116)
334 cd05899 IgV_TCR_beta Immunoglo 94.1 0.17 3.7E-06 30.6 4.9 21 60-80 71-91 (110)
335 smart00407 IGc1 Immunoglobulin 93.9 0.59 1.3E-05 26.1 6.4 15 5-19 14-28 (75)
336 PF08204 V-set_CD47: CD47 immu 93.8 0.5 1.1E-05 29.7 6.4 35 59-93 81-119 (130)
337 PF13927 Ig_3: Immunoglobulin 93.6 0.17 3.6E-06 27.7 3.9 16 65-80 58-73 (75)
338 PF08205 C2-set_2: CD80-like C 93.3 0.42 9.2E-06 27.5 5.3 16 3-18 26-41 (89)
339 cd05898 Ig5_KIRREL3 Fifth immu 93.2 0.66 1.4E-05 27.6 6.0 25 65-89 68-93 (98)
340 cd04983 IgV_TCR_alpha_like Imm 93.0 0.19 4.1E-06 30.3 3.7 33 48-80 56-89 (109)
341 cd07691 Ig_CD3_gamma_delta Imm 92.3 0.52 1.1E-05 25.9 4.3 58 27-95 8-65 (69)
342 cd05716 Ig_pIgR Immunoglobulin 91.4 1.2 2.6E-05 26.2 5.8 21 61-81 64-84 (98)
343 cd05770 IgC_beta2m Class I maj 91.3 1.8 4E-05 25.5 6.3 14 66-79 65-78 (93)
344 PF06328 Lep_receptor_Ig: Ig-l 91.3 1.9 4E-05 25.2 7.1 61 108-168 13-81 (89)
345 cd00099 IgV Immunoglobulin var 91.3 0.33 7.2E-06 28.9 3.3 22 60-81 66-87 (105)
346 PF05790 C2-set: Immunoglobuli 91.1 1.8 3.9E-05 24.7 6.4 23 147-169 41-63 (80)
347 PF07686 V-set: Immunoglobulin 91.1 0.38 8.3E-06 28.8 3.5 30 49-78 66-96 (114)
348 cd05715 Ig_P0-like Immunoglobu 91.0 0.45 9.8E-06 29.1 3.8 18 61-78 80-97 (116)
349 PHA03270 envelope glycoprotein 90.9 5.9 0.00013 30.3 11.8 75 86-170 317-401 (466)
350 cd05767 IgC_MHC_II_alpha Class 90.5 1.8 4E-05 25.5 5.8 14 66-79 66-79 (94)
351 PF06832 BiPBP_C: Penicillin-B 90.2 2.4 5.2E-05 24.6 8.7 55 115-176 31-85 (89)
352 cd05755 Ig2_ICAM-1_like Second 90.0 2 4.3E-05 25.7 5.7 65 11-81 12-82 (100)
353 cd07699 IgC_L Immunoglobulin C 89.5 1.9 4.2E-05 25.6 5.5 14 6-19 33-46 (100)
354 PF02124 Marek_A: Marek's dise 89.0 5.7 0.00012 27.3 15.0 74 87-170 73-159 (211)
355 cd05847 IgC_CH2_IgE CH2 domain 88.7 2.4 5.2E-05 25.0 5.4 13 6-18 30-42 (94)
356 smart00406 IGv Immunoglobulin 88.4 0.38 8.1E-06 26.9 1.8 30 49-78 49-79 (81)
357 cd05766 IgC_MHC_II_beta Class 88.1 2.5 5.4E-05 24.9 5.3 14 6-19 30-43 (94)
358 PHA03269 envelope glycoprotein 85.6 16 0.00034 28.7 11.0 74 87-170 427-512 (566)
359 cd05751 Ig1_LILRB1_like First 85.1 1.3 2.9E-05 25.7 3.0 21 61-81 53-73 (91)
360 KOG0613|consensus 84.9 2 4.3E-05 37.1 4.7 69 108-176 344-420 (1205)
361 PHA03052 Hypothetical protein; 83.5 4.8 0.0001 22.0 4.3 34 106-139 5-41 (69)
362 PHA02865 MHC-like TNF binding 82.6 9.3 0.0002 28.4 6.8 21 115-135 216-238 (338)
363 PHA03271 envelope glycoprotein 82.2 20 0.00044 27.5 11.6 75 86-170 343-430 (490)
364 cd05890 Ig2_Nectin-1_like Seco 81.7 8.6 0.00019 22.8 6.1 67 116-183 23-97 (98)
365 PHA02982 hypothetical protein; 79.9 6.8 0.00015 26.9 5.0 68 109-176 35-127 (251)
366 PF07354 Sp38: Zona-pellucida- 78.4 3.2 6.8E-05 29.5 3.2 44 6-55 12-60 (271)
367 cd07694 Ig2_CD4 Second immunog 76.5 6.4 0.00014 22.9 3.6 33 61-93 51-83 (88)
368 cd05712 Ig_Siglec_N Immunoglob 76.2 2.5 5.4E-05 26.0 2.1 32 48-79 66-98 (119)
369 PHA03189 UL14 tegument protein 74.5 31 0.00068 25.3 8.0 21 155-175 139-159 (348)
370 PF11049 KSHV_K1: Glycoprotein 69.4 15 0.00033 20.0 3.7 44 117-170 2-45 (71)
371 PHA02914 Immunoglobulin-like d 63.3 55 0.0012 25.1 6.8 65 108-172 274-369 (500)
372 PHA03273 envelope glycoprotein 56.3 97 0.0021 24.4 10.6 72 88-170 336-421 (486)
373 PHA03240 envelope glycoprotein 53.2 37 0.0008 23.5 4.2 29 147-175 103-131 (258)
374 PHA03286 envelope glycoprotein 47.3 64 0.0014 25.2 5.1 38 148-185 126-163 (492)
375 PF01688 Herpes_gI: Alphaherpe 42.5 1E+02 0.0022 20.5 4.9 24 149-172 124-147 (161)
376 PHA03282 envelope glycoprotein 38.4 92 0.002 24.6 4.8 24 147-170 122-145 (540)
377 PF02480 Herpes_gE: Alphaherpe 35.5 44 0.00096 26.1 2.9 23 148-170 268-290 (439)
378 PF02480 Herpes_gE: Alphaherpe 34.8 13 0.00028 28.9 0.0 38 148-185 88-125 (439)
379 PHA03283 envelope glycoprotein 34.0 1.1E+02 0.0024 24.5 4.7 37 148-185 133-169 (542)
380 PF05955 Herpes_gp2: Equine he 30.3 1.8E+02 0.0038 19.7 5.2 13 4-16 120-132 (226)
381 KOG1026|consensus 29.7 43 0.00093 28.1 2.1 69 108-183 202-271 (774)
382 PHA03282 envelope glycoprotein 28.6 72 0.0016 25.1 2.9 21 149-169 333-353 (540)
383 COG4953 PbpC Membrane carboxyp 28.4 3.5E+02 0.0075 22.8 6.6 55 116-177 672-726 (733)
384 PHA03292 envelope glycoprotein 28.2 2E+02 0.0043 22.1 5.0 24 149-172 128-151 (413)
385 COG5475 Uncharacterized small 27.9 1E+02 0.0022 16.2 3.3 15 161-175 28-42 (60)
386 KOG3611|consensus 27.7 1.8E+02 0.0038 24.7 5.2 56 116-172 572-635 (737)
387 PHA03289 envelope glycoprotein 26.6 2.5E+02 0.0054 21.1 5.1 24 149-172 122-145 (352)
388 TIGR00864 PCC polycystin catio 26.1 7.1E+02 0.015 25.3 13.0 70 67-137 1833-1906(2740)
389 PRK15372 pathogenicity island 25.5 2.4E+02 0.0052 20.3 4.7 31 49-83 65-95 (292)
390 PF02440 Adeno_E3_CR1: Adenovi 23.0 1.4E+02 0.0031 16.2 4.6 20 111-134 3-22 (63)
391 PHA03290 envelope glycoprotein 22.0 3.3E+02 0.0072 20.6 5.1 23 149-171 129-151 (357)
No 1
>KOG3513|consensus
Probab=99.85 E-value=1e-19 Score=143.14 Aligned_cols=120 Identities=22% Similarity=0.357 Sum_probs=98.2
Q ss_pred EEEEEecccceeEE--eeccceeeEEEEEEEEc-CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeC-C
Q psy15738 65 ILAMEKEEEERKKK--KKRKKRKKKKKKKEKRI-PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL-P 140 (187)
Q Consensus 65 ~~~v~~~d~g~y~c--~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~-~ 140 (187)
+..++..|+|.|.| .+..+.....+.|.|.. +|.+..........+..|..+.+.|...+.|.|.+.|.+++..+ .
T Consensus 390 is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~ 469 (1051)
T KOG3513|consen 390 ISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQ 469 (1051)
T ss_pred EEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCccccc
Confidence 78899999999999 55677777888999874 47665444333456778999999999999999999999998844 4
Q ss_pred CCcEEE-eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738 141 GGEYSY-SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185 (187)
Q Consensus 141 ~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 185 (187)
.+++.. .+++|.|.+++++|+|.|+|.|.|..|.. .....|.|.
T Consensus 470 ~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a-~~~~~L~Vk 514 (1051)
T KOG3513|consen 470 SGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKA-ESTGNLIVK 514 (1051)
T ss_pred CceEEECCCCcEEecccCcccCcEEEEEEEcccCcc-ceEEEEEEe
Confidence 444443 67999999999999999999999999999 478888764
No 2
>KOG3513|consensus
Probab=99.85 E-value=7.1e-20 Score=143.95 Aligned_cols=147 Identities=23% Similarity=0.380 Sum_probs=106.3
Q ss_pred cCCCCeeEEEeC-e-EeeeccEEEeeccccccceeEEEEEecccceeEE--eeccceeeEEEEEEEEcCCeeEEecCCce
Q psy15738 32 DSRPESTFWIFG-K-LITSCSYIILATSLLHYLSYILAMEKEEEERKKK--KKRKKRKKKKKKKEKRIPPRIIYVSGAGK 107 (187)
Q Consensus 32 ~~~~~~~~w~~~-~-~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c--~~~~~~~~~~~~l~v~~~p~~~~~~~~~~ 107 (187)
..+.....|+++ + .+-..++.+..++.+. |.+++.+|+|.|+| .+..++...++.|.|..++++.. .+..
T Consensus 452 asP~p~~~W~k~~~~~~~~~r~~i~edGtL~----I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~--~P~~ 525 (1051)
T KOG3513|consen 452 ASPKPKVSWLKGGEKLLQSGRIRILEDGTLE----ISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITL--APSN 525 (1051)
T ss_pred CCCcceEEEEcCCcccccCceEEECCCCcEE----ecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEe--ccch
Confidence 333344444433 1 2224444555555555 89999999999999 55567778889999999999864 4556
Q ss_pred EEEecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCC----cEEEeC----cEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738 108 VEVKKGYSVTLECKADGNPVP--NITWTRKNNNLPGG----EYSYSG----NSLTVRHTNRHSAGIYLCVANNMVGSSAA 177 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~----~~~~~~----~~l~i~~~~~~d~g~y~C~~~n~~g~~~s 177 (187)
..+..|+.+.|+|.+...+.. .+.|.++|.++... .+.... +.|+|.++...|+|.|.|.|.....+. +
T Consensus 526 ~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~-s 604 (1051)
T KOG3513|consen 526 TDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSA-S 604 (1051)
T ss_pred hhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecch-h
Confidence 778899999999999776654 68899999876322 222222 459999999999999999999877666 5
Q ss_pred eeEEEEEE
Q psy15738 178 ASIALHVL 185 (187)
Q Consensus 178 ~~~~l~v~ 185 (187)
..+.|.|.
T Consensus 605 ~~A~l~V~ 612 (1051)
T KOG3513|consen 605 ARADLLVR 612 (1051)
T ss_pred cccceEEe
Confidence 66666654
No 3
>KOG4194|consensus
Probab=99.77 E-value=5.2e-18 Score=126.32 Aligned_cols=119 Identities=23% Similarity=0.407 Sum_probs=100.2
Q ss_pred EEEEEecccceeEEeec---cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCee-CC
Q psy15738 65 ILAMEKEEEERKKKKKR---KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN-LP 140 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~-~~ 140 (187)
+-+|+..|.|.|.|+.+ +..-+..++|+|...|.+. ..|..+.+..|..+.|.|.+.|.|.|+|.|.++|.. .+
T Consensus 578 L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFt--ktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFP 655 (873)
T KOG4194|consen 578 LDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFT--KTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFP 655 (873)
T ss_pred eeeeecccCceEEEEEecccCcchhheeEEEeeccCccc--cCcccceeecccceeeeeeccCCCCcceeehhcCCCCCc
Confidence 56899999999999444 5666788999999999994 556678899999999999999999999999999876 44
Q ss_pred CCcE----E-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738 141 GGEY----S-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC 186 (187)
Q Consensus 141 ~~~~----~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~ 186 (187)
..+. . .......|.+++.+|.|.|+|.|.|.+|+. +.+++|.|+-
T Consensus 656 AA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~i-sanAtL~V~e 705 (873)
T KOG4194|consen 656 AARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQI-SANATLTVLE 705 (873)
T ss_pred hhhhheeeecCCCCEEEEecccccccceeEEeeeccccce-eeceEEEEec
Confidence 3321 1 135678999999999999999999999999 6999999863
No 4
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.76 E-value=7.5e-17 Score=110.30 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=78.1
Q ss_pred cceeEEEEEecccceeEEeec--cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEecc-----CCCCcEEEE
Q psy15738 61 YLSYILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADG-----NPVPNITWT 133 (187)
Q Consensus 61 ~~~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-----~p~p~~~W~ 133 (187)
...+|..++.+|+|.|+|.+. .......+.|.|..++ ....+.+|+.+.|.|.+.+ .|.|.+.|+
T Consensus 98 ~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~--------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~Wy 169 (227)
T PHA02826 98 ENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGT--------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWY 169 (227)
T ss_pred CeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCC--------ccceEecCCCEEEEeeCCCCccccCCCceEEEE
Confidence 345589999999999999444 3334555666664222 1245678999999999853 457899999
Q ss_pred eCCeeCCCCc-EEE--eCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738 134 RKNNNLPGGE-YSY--SGNSLTVRHTNRHSAGIYLCVANNMVGS 174 (187)
Q Consensus 134 ~~~~~~~~~~-~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 174 (187)
+++.++.... ... ..+.|.|.++..+|+|.|.|.|....+.
T Consensus 170 Kng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g 213 (227)
T PHA02826 170 KNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKNS 213 (227)
T ss_pred ECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeECC
Confidence 9999875443 222 3468999999999999999999987544
No 5
>KOG4222|consensus
Probab=99.76 E-value=8.6e-18 Score=132.06 Aligned_cols=128 Identities=23% Similarity=0.439 Sum_probs=107.5
Q ss_pred EEeeccccccceeEEEEEecccceeEEeec---cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCC
Q psy15738 52 IILATSLLHYLSYILAMEKEEEERKKKKKR---KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP 128 (187)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p 128 (187)
.+...+.+. |.+++.+|.|.|.|++. +...+..+.|.|..+|.+. ..+..+.+..|.++.+.|.+.|.|.|
T Consensus 182 ~lisgG~Ll----IsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~--~rp~~~~v~~g~~~~f~c~v~GdP~P 255 (1281)
T KOG4222|consen 182 ALISGGNLL----ISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFW--KRPKDLAVLVGAAAEFDCRVGGDPQP 255 (1281)
T ss_pred EEecCCcEE----EeccccCCCceeeeeecccccccccccceeeeccCCccc--cccccceeecccccccccccCCCCCC
Confidence 334445666 99999999999999665 6677788999999999984 55666788899999999999999999
Q ss_pred cEEEEeCCeeCCCCcEEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738 129 NITWTRKNNNLPGGEYSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC 186 (187)
Q Consensus 129 ~~~W~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~ 186 (187)
.+.|.+++..++-.++.. ...+|.+.++...|.|.|.|.+.|.+|.. .....|+|+.
T Consensus 256 ~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l-~asa~ltV~a 314 (1281)
T KOG4222|consen 256 TVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGL-EASATLTVQA 314 (1281)
T ss_pred ceeeeccCCCCCccceeeeeccccccccccCCCcccceeeecccccccc-ccccceEEec
Confidence 999999888877776643 34789999999999999999999999998 5888888864
No 6
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.76 E-value=2.7e-17 Score=96.68 Aligned_cols=79 Identities=34% Similarity=0.515 Sum_probs=66.8
Q ss_pred CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738 105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH 183 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~ 183 (187)
+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ...+..|.|.++..+|.|.|.|.|.|..|.. +..+.|.
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~ 86 (88)
T cd05851 8 FKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKD-KHQARVY 86 (88)
T ss_pred cccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCce-EEEEEEE
Confidence 3456788999999999999999999999999887755432 2345689999999999999999999999998 5788877
Q ss_pred E
Q psy15738 184 V 184 (187)
Q Consensus 184 v 184 (187)
|
T Consensus 87 V 87 (88)
T cd05851 87 V 87 (88)
T ss_pred E
Confidence 6
No 7
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.73 E-value=9.3e-17 Score=94.81 Aligned_cols=83 Identities=25% Similarity=0.412 Sum_probs=70.1
Q ss_pred ecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceee
Q psy15738 102 VSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAAS 179 (187)
Q Consensus 102 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~ 179 (187)
...++.+.+.+|+++.|.|.+.|. .|.+.|++++..+...+... ..+.|.|.++..+|.|.|.|.|.|..|...+.+
T Consensus 7 ~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~ 85 (91)
T cd05740 7 NNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDP 85 (91)
T ss_pred ccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeee
Confidence 344456788999999999999999 99999999998876554332 346899999999999999999999999987888
Q ss_pred EEEEEE
Q psy15738 180 IALHVL 185 (187)
Q Consensus 180 ~~l~v~ 185 (187)
+.|.|+
T Consensus 86 ~~L~V~ 91 (91)
T cd05740 86 YILNVN 91 (91)
T ss_pred EEEEeC
Confidence 888874
No 8
>KOG4221|consensus
Probab=99.73 E-value=2e-17 Score=130.73 Aligned_cols=151 Identities=19% Similarity=0.391 Sum_probs=116.7
Q ss_pred ceEEccCCCCeeEEEeC-eEeeec--cEEEeeccccccceeEEEEEecccceeEEeecc--ceeeEEEEEEEEcCCeeEE
Q psy15738 27 AIMFADSRPESTFWIFG-KLITSC--SYIILATSLLHYLSYILAMEKEEEERKKKKKRK--KRKKKKKKKEKRIPPRIIY 101 (187)
Q Consensus 27 ~~~~~~~~~~~~~w~~~-~~~~~~--~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~--~~~~~~~~l~v~~~p~~~~ 101 (187)
.|.++++..+...|+++ +.+... ++++...+.+. |.+++..|+|.|+|.+.. ......+.|+|..+|.+
T Consensus 258 eCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~sll----iS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~-- 331 (1381)
T KOG4221|consen 258 ECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLL----ISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGF-- 331 (1381)
T ss_pred EEEecCCCCCceEEeeCCeeeeecceEEEEecccceE----EeccccccCceEEEEecCCCcccccceEEEEEcCCCC--
Confidence 47777888888888855 555544 44444444555 899999999999997766 44556778899999988
Q ss_pred ecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE-E-eCcEEEEecCCCCCCeEEEEEEecCCCCcceee
Q psy15738 102 VSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS-Y-SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAAS 179 (187)
Q Consensus 102 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~-~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~ 179 (187)
+..+......++.++.|.|.+.|.|.|.+.|+++|..+....+. . ..+.|.|..+-..|.|.|.|.++|..|..+ ..
T Consensus 332 ~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~-a~ 410 (1381)
T KOG4221|consen 332 TKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQ-AA 410 (1381)
T ss_pred CCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCccccc-ch
Confidence 46666778888999999999999999999999999876555433 2 233488889999999999999999999984 66
Q ss_pred EEEEE
Q psy15738 180 IALHV 184 (187)
Q Consensus 180 ~~l~v 184 (187)
+.|.+
T Consensus 411 a~l~v 415 (1381)
T KOG4221|consen 411 AQLEV 415 (1381)
T ss_pred hhhee
Confidence 66643
No 9
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.73 E-value=1.1e-16 Score=95.65 Aligned_cols=80 Identities=38% Similarity=0.733 Sum_probs=68.1
Q ss_pred eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-c-EEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738 107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-E-YSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL 182 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~-~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l 182 (187)
...+..|+.+.|.|.+.|.|.|.+.|++++..+... . ... ....|.|.++..+|.|.|.|.|.|..|.. ...+.|
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L 90 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQ-EAEIHL 90 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeE-EEEEEE
Confidence 456788999999999999999999999999887554 2 221 23579999999999999999999999998 589999
Q ss_pred EEEeC
Q psy15738 183 HVLCK 187 (187)
Q Consensus 183 ~v~~~ 187 (187)
.|..|
T Consensus 91 ~V~~~ 95 (95)
T cd05730 91 KVFAK 95 (95)
T ss_pred EEEeC
Confidence 99865
No 10
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.73 E-value=1.7e-16 Score=95.07 Aligned_cols=82 Identities=27% Similarity=0.427 Sum_probs=69.9
Q ss_pred CCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE----eCcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738 104 GAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAA 178 (187)
Q Consensus 104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~ 178 (187)
.+....+..|+.+.|.|.+.|.|+|.+.|++++..+.... ... ..+.|.|.++..+|+|.|.|.|.|..|.. ..
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~-~~ 84 (98)
T cd05762 6 FPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSR-QA 84 (98)
T ss_pred CCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCce-eE
Confidence 3456788999999999999999999999999999886443 222 24679999999999999999999999999 58
Q ss_pred eEEEEEEe
Q psy15738 179 SIALHVLC 186 (187)
Q Consensus 179 ~~~l~v~~ 186 (187)
.+.|.|..
T Consensus 85 ~~~l~V~~ 92 (98)
T cd05762 85 QVNLTVVD 92 (98)
T ss_pred EEEEEEec
Confidence 89998864
No 11
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.73 E-value=1.4e-16 Score=95.64 Aligned_cols=80 Identities=24% Similarity=0.317 Sum_probs=67.6
Q ss_pred ceEEEecCCcEEEEeEecc-CCCCcEEEEeCCeeCCCCcE-E-E-e-------CcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738 106 GKVEVKKGYSVTLECKADG-NPVPNITWTRKNNNLPGGEY-S-Y-S-------GNSLTVRHTNRHSAGIYLCVANNMVGS 174 (187)
Q Consensus 106 ~~~~~~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~-~-~-~-------~~~l~i~~~~~~d~g~y~C~~~n~~g~ 174 (187)
....+..|+++.|.|.+.| .|+|.+.|+|+|.++..... . . . ...|.|.++..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 3567889999999999999 88999999999998864322 1 1 1 367999999999999999999999998
Q ss_pred cceeeEEEEEEe
Q psy15738 175 SAAASIALHVLC 186 (187)
Q Consensus 175 ~~s~~~~l~v~~ 186 (187)
. +..+.|.|.+
T Consensus 91 ~-~~t~~L~V~v 101 (101)
T cd04975 91 K-SLTFELYVNV 101 (101)
T ss_pred E-EEEEEEEEEC
Confidence 8 6888888864
No 12
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.73 E-value=4.9e-17 Score=92.61 Aligned_cols=72 Identities=33% Similarity=0.583 Sum_probs=61.7
Q ss_pred cCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE--EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 112 KGYSVTLECKADGNPVPNITWTRKNNNLPGGEY--SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 112 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
+|+.+.|.|.+.|.|.|.+.|++++..+..... ....+.|.|.++..+|.|.|.|.|.|..|.. +..+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQ-RTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCce-eEEEEEeC
Confidence 588999999999999999999999988755432 2345789999999999999999999999998 57777764
No 13
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.72 E-value=4e-16 Score=112.82 Aligned_cols=136 Identities=15% Similarity=0.205 Sum_probs=90.6
Q ss_pred CCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeecc---ce---eeEEEEEEEEc---CCeeEEec
Q psy15738 33 SRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK---KR---KKKKKKKEKRI---PPRIIYVS 103 (187)
Q Consensus 33 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~---~~---~~~~~~l~v~~---~p~~~~~~ 103 (187)
..+....|.++..+...++....++ ...|.+|+.+|.|.|+|.+.. .. ....+.|.|.. ||.+ .
T Consensus 153 ~~~~~i~W~k~~~~~~~r~~~~~~~----~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~---~ 225 (326)
T PHA02785 153 NVNADIIWSGHRRLRNKRLKQRTPG----IITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM---Q 225 (326)
T ss_pred CCCceEEEccCCccCCcceEecCCC----eEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee---c
Confidence 4556777765433333343333223 344899999999999995542 21 12344566642 3333 2
Q ss_pred CCceEEEecCCcEEEEeEeccCCCC---cEEEEeCCeeCCCC------cEEE------------eCcEEEEecCCCCCCe
Q psy15738 104 GAGKVEVKKGYSVTLECKADGNPVP---NITWTRKNNNLPGG------EYSY------------SGNSLTVRHTNRHSAG 162 (187)
Q Consensus 104 ~~~~~~~~~g~~~~l~C~~~g~p~p---~~~W~~~~~~~~~~------~~~~------------~~~~l~i~~~~~~d~g 162 (187)
.+....+..|+.+.|.|.+.|.|.+ .+.|++||..+... +... ....|.|.++..+|.|
T Consensus 226 ~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G 305 (326)
T PHA02785 226 LPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDAT 305 (326)
T ss_pred CCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCe
Confidence 2345667789999999999998864 79999999876431 1110 1357999999999999
Q ss_pred EEEEEEecCCCCc
Q psy15738 163 IYLCVANNMVGSS 175 (187)
Q Consensus 163 ~y~C~~~n~~g~~ 175 (187)
.|.|.|.|..|..
T Consensus 306 ~Y~C~A~n~~~~~ 318 (326)
T PHA02785 306 TFTCMAFTIPSIS 318 (326)
T ss_pred eeEEEEEeccCce
Confidence 9999999988554
No 14
>KOG4221|consensus
Probab=99.72 E-value=2.4e-16 Score=124.87 Aligned_cols=155 Identities=21% Similarity=0.394 Sum_probs=114.5
Q ss_pred ceEEccCCCCeeEEEeC-e-EeeeccEEEeeccccccceeEEEEEecccceeEEeecc---ceeeEEEEEEEEcCCee--
Q psy15738 27 AIMFADSRPESTFWIFG-K-LITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK---KRKKKKKKKEKRIPPRI-- 99 (187)
Q Consensus 27 ~~~~~~~~~~~~~w~~~-~-~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~v~~~p~~-- 99 (187)
.|.+.........|.++ . .....+...+.++.+. |..+...|.|.|+|...+ ...+..+.|+|...|..
T Consensus 161 ~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~----I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~ 236 (1381)
T KOG4221|consen 161 SCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALE----ISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALN 236 (1381)
T ss_pred EEEEcCccCceeEEecccccccCCCcEEEcCCCcEE----ecccccCCCceEEEEEecCCcCCccceeEEEecCCccccc
Confidence 34454555556778755 3 2234477778888888 999999999999995543 23366788888744432
Q ss_pred --EEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE--E-eCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738 100 --IYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS--Y-SGNSLTVRHTNRHSAGIYLCVANNMVGS 174 (187)
Q Consensus 100 --~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~--~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 174 (187)
.+...+....+.+|+++.|.|.+.|.|.|.|.|.+|+..+....+. . ..+.|.+.+++..|+|.|+|.|.|....
T Consensus 237 ~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~ 316 (1381)
T KOG4221|consen 237 KLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDS 316 (1381)
T ss_pred ceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcc
Confidence 2345566678889999999999999999999999999887655332 2 3678999999999999999999996555
Q ss_pred cceeeEEEEEEe
Q psy15738 175 SAAASIALHVLC 186 (187)
Q Consensus 175 ~~s~~~~l~v~~ 186 (187)
. ...+.|.|+.
T Consensus 317 i-dasaev~V~a 327 (1381)
T KOG4221|consen 317 I-DASAEVTVLA 327 (1381)
T ss_pred c-ccceEEEEEc
Confidence 5 3566677654
No 15
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.72 E-value=1.6e-16 Score=90.89 Aligned_cols=71 Identities=30% Similarity=0.587 Sum_probs=61.1
Q ss_pred CCcEEEEeEeccCCCCcEEEEeCCeeCCCC----cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 113 GYSVTLECKADGNPVPNITWTRKNNNLPGG----EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
|+.+.|.|.+.|.|.|.+.|+++|..+... ......+.|.|.++..+|+|.|.|.|.|..|.. ...+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNL-LANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeE-EEEEEEEE
Confidence 678999999999999999999999877543 233456789999999999999999999999998 57888876
No 16
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.71 E-value=8e-17 Score=89.11 Aligned_cols=67 Identities=27% Similarity=0.454 Sum_probs=57.2
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC 186 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~ 186 (187)
+.|.|.+.|.|.|.+.|+|+|.++.... ..+.|.|.++..+|+|.|+|.|.|..|.. ++++.+.+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~---~~~~L~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~l~v 67 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH---SQHSLQIKDVTEASAGTYTLVLWNSAAGL-EKRISLELIV 67 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC---CcCEEEECCCCHHHCEEEEEEEEECCccE-EEEEEEEEEC
Confidence 3689999999999999999999885321 34689999999999999999999999987 5777777653
No 17
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.70 E-value=1.1e-15 Score=110.56 Aligned_cols=108 Identities=15% Similarity=0.213 Sum_probs=76.0
Q ss_pred EEEEEecccceeEEeeccce--eeEEEEEEEEcCC--eeEEecCCceEEEecCCcEEEEeE-----eccCCCCcEEEEeC
Q psy15738 65 ILAMEKEEEERKKKKKRKKR--KKKKKKKEKRIPP--RIIYVSGAGKVEVKKGYSVTLECK-----ADGNPVPNITWTRK 135 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~~~~--~~~~~~l~v~~~p--~~~~~~~~~~~~~~~g~~~~l~C~-----~~g~p~p~~~W~~~ 135 (187)
+..+..+|+|.|+|.++... ....+.|+|.... .+... .....+.+|..+.+.|. ..+.|+|.+.|+++
T Consensus 86 i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~--~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~ 163 (326)
T PHA02785 86 ILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLI--SYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGH 163 (326)
T ss_pred EcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCcccee--eccceecccCcEEEECCChhhcccCCCCceEEEccC
Confidence 66778899999999665433 3456677775432 22211 12244668999999997 24678899999986
Q ss_pred CeeCCCCcEEE-eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738 136 NNNLPGGEYSY-SGNSLTVRHTNRHSAGIYLCVANNMVGSS 175 (187)
Q Consensus 136 ~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 175 (187)
.. +...+... .++.|.|.+++.+|.|.|.|.+.|..|..
T Consensus 164 ~~-~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~ 203 (326)
T PHA02785 164 RR-LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDK 203 (326)
T ss_pred Cc-cCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCE
Confidence 53 33333322 35789999999999999999999998875
No 18
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.70 E-value=5.1e-16 Score=93.32 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=66.6
Q ss_pred eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE-E----------eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738 107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS-Y----------SGNSLTVRHTNRHSAGIYLCVANNMVGSS 175 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~-~----------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 175 (187)
...+..|+.+.|.|.+.|.|+|.+.|+++|.++...... . ..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 456778999999999999999999999999988654321 1 13579999999999999999999999988
Q ss_pred ceeeEEEEEEe
Q psy15738 176 AAASIALHVLC 186 (187)
Q Consensus 176 ~s~~~~l~v~~ 186 (187)
+.++.|.|++
T Consensus 92 -~~t~~l~V~v 101 (101)
T cd05859 92 -SYTFALQIQV 101 (101)
T ss_pred -EEEEEEEEEC
Confidence 6888888763
No 19
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.70 E-value=2.2e-16 Score=88.40 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=56.8
Q ss_pred EEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738 117 TLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185 (187)
Q Consensus 117 ~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 185 (187)
.|.|.+.|.|.|.+.|++++.++...........|.|.++..+|+|.|.|.|.|..|... ...++.+.
T Consensus 2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~-~~~t~~l~ 69 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEE-QRHTFQLV 69 (70)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCcee-eEEEEEEE
Confidence 689999999999999999999987654444456899999999999999999999999873 55555543
No 20
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.69 E-value=2.5e-16 Score=89.11 Aligned_cols=71 Identities=28% Similarity=0.532 Sum_probs=60.0
Q ss_pred CCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEE-eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 113 GYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSY-SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
|+.+.|.|.+.|.|.|.+.|++++..+... +... ..+.|.|.++..+|.|.|.|.|.|..|.. +.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKA-NSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCce-eEEEEEEC
Confidence 678999999999999999999999876443 3332 45789999999999999999999999998 57777764
No 21
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.69 E-value=5.8e-16 Score=90.53 Aligned_cols=77 Identities=25% Similarity=0.489 Sum_probs=64.8
Q ss_pred eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC--cEEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738 107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG--EYSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASI 180 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~ 180 (187)
.+.+..|+.+.|.|.+.|.|.|.+.|++++.++... +... ..+.|.|.++.++|+|.|.|.|.|..|.. +.++
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~~ 82 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED-HASL 82 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-EEEE
Confidence 456789999999999999999999999999988543 2222 13579999999999999999999999988 5777
Q ss_pred EEEE
Q psy15738 181 ALHV 184 (187)
Q Consensus 181 ~l~v 184 (187)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 7764
No 22
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.69 E-value=3.8e-16 Score=89.25 Aligned_cols=72 Identities=29% Similarity=0.529 Sum_probs=60.8
Q ss_pred CCcEEEEeEeccCCCCcEEEEeCCeeCCCC----cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738 113 GYSVTLECKADGNPVPNITWTRKNNNLPGG----EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 185 (187)
|+.+.|.|.+.|.|.|.+.|+++|.++... ......+.|.+.++...|.|.|.|.|.|..|.. ..++.|.|+
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYL-LANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEE-EEEEEEEeC
Confidence 678899999999999999999999887432 122345689999999999999999999999999 588888874
No 23
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.69 E-value=6.5e-16 Score=90.28 Aligned_cols=79 Identities=32% Similarity=0.545 Sum_probs=67.6
Q ss_pred CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738 105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH 183 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~ 183 (187)
+....+..|+.+.|.|.+.|.|.|.+.|++++..+... +.....+.|.|.++..+|+|.|.|.|.|..|.. +.++.|.
T Consensus 6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 84 (85)
T cd05728 6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTI-YASAELA 84 (85)
T ss_pred CCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeE-EEEEEEE
Confidence 44567889999999999999999999999999987654 333456789999999999999999999999988 5777776
Q ss_pred E
Q psy15738 184 V 184 (187)
Q Consensus 184 v 184 (187)
|
T Consensus 85 V 85 (85)
T cd05728 85 V 85 (85)
T ss_pred C
Confidence 4
No 24
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.68 E-value=1.4e-15 Score=89.51 Aligned_cols=80 Identities=34% Similarity=0.562 Sum_probs=66.5
Q ss_pred CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738 105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH 183 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~ 183 (187)
+....+.+|+.+.|.|.+.|.|.|.+.|++++....... .......|.|.++..+|+|.|.|.|.|..|.. +..+.|.
T Consensus 8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 86 (88)
T cd04968 8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKD-THQGRIY 86 (88)
T ss_pred CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcE-EEEEEEE
Confidence 445667899999999999999999999999887654332 22356789999999999999999999999998 5788887
Q ss_pred EE
Q psy15738 184 VL 185 (187)
Q Consensus 184 v~ 185 (187)
|+
T Consensus 87 V~ 88 (88)
T cd04968 87 VQ 88 (88)
T ss_pred EC
Confidence 63
No 25
>KOG4194|consensus
Probab=99.68 E-value=8.4e-16 Score=114.76 Aligned_cols=123 Identities=20% Similarity=0.336 Sum_probs=96.2
Q ss_pred ccceeEEEEEecccceeEEeec--cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCC-CcEEEEeCC
Q psy15738 60 HYLSYILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPV-PNITWTRKN 136 (187)
Q Consensus 60 ~~~~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~~~W~~~~ 136 (187)
+...||-+|+.+|.|.|+|.+. .+..+..++|+|...|.+..+ -....+..|+++.+.|.+.|.|+ |++.|+|++
T Consensus 668 dd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~P--L~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d 745 (873)
T KOG4194|consen 668 DDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIP--LEDQLVVVGETLVLQCLAEGAPADPRLEWFKED 745 (873)
T ss_pred CCEEEEecccccccceeEEeeeccccceeeceEEEEecCCccccc--ccceEEEecceEEEEEecCCCCCCccccccCCC
Confidence 3455689999999999999444 566677889999999988644 33467889999999999999987 999999999
Q ss_pred eeCCCCc-EEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738 137 NNLPGGE-YSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185 (187)
Q Consensus 137 ~~~~~~~-~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 185 (187)
+++--.. ... ....|.+.+...+|+|.|+|...|..|... ..+.+.+.
T Consensus 746 ~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~-~~i~l~~~ 796 (873)
T KOG4194|consen 746 KPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTER-IHICLLVY 796 (873)
T ss_pred CceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeecccee-eEEEEEEe
Confidence 8763322 111 235678888889999999999999999874 66666554
No 26
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.68 E-value=8e-16 Score=91.30 Aligned_cols=79 Identities=24% Similarity=0.514 Sum_probs=64.7
Q ss_pred CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE--e---CcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738 105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY--S---GNSLTVRHTNRHSAGIYLCVANNMVGSSAAA 178 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~--~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~ 178 (187)
+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ... . ...|.|.++..+|+|.|.|.|.|..|.. +.
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~ 86 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE-TV 86 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc-eE
Confidence 345678899999999999999999999999998875432 221 1 2379999999999999999999999988 57
Q ss_pred eEEEEE
Q psy15738 179 SIALHV 184 (187)
Q Consensus 179 ~~~l~v 184 (187)
.+.|.|
T Consensus 87 ~~~v~v 92 (92)
T cd05737 87 DVTVSV 92 (92)
T ss_pred EEEEeC
Confidence 776654
No 27
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.67 E-value=6.1e-16 Score=87.84 Aligned_cols=68 Identities=31% Similarity=0.519 Sum_probs=56.0
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeCCC--CcEEE--e-C--cEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNLPG--GEYSY--S-G--NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~~~--~~~~~--~-~--~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
+.|.|.+.|.|.|.+.|++++..+.. .+... . . .+|.|.++..+|+|.|.|.|.|..|.. +..+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVA-TCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeE-EEEEEEeC
Confidence 46899999999999999999988753 23222 1 1 279999999999999999999999988 57777765
No 28
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.67 E-value=1.2e-15 Score=87.38 Aligned_cols=71 Identities=28% Similarity=0.518 Sum_probs=60.9
Q ss_pred CCcEEEEeEeccCCCCcEEEEeCCeeCCCCc----EEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGE----YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
|+.+.|.|.+.|.|.|.+.|++++..+.... .......|.|.++..+|.|.|.|.|.|..|.. +..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYL-LANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeE-EEeEEEEE
Confidence 6789999999999999999999998775432 22345789999999999999999999999998 58888876
No 29
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.66 E-value=1.3e-15 Score=85.97 Aligned_cols=69 Identities=28% Similarity=0.611 Sum_probs=57.4
Q ss_pred cEEEEeEeccCCCCcEEEEeCCeeCCCCc-EE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 115 SVTLECKADGNPVPNITWTRKNNNLPGGE-YS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 115 ~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
++.|.|.+.|.|.|.+.|++++..+.... .. ...+.|.+.++..+|.|.|.|.|.|..|.. +.++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNV-QASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEE-EEEEEEEC
Confidence 46899999999999999999998775443 22 245678899999999999999999999998 57877764
No 30
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.66 E-value=1.2e-15 Score=86.03 Aligned_cols=70 Identities=24% Similarity=0.429 Sum_probs=58.8
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeCCCCcE-EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNLPGGEY-SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC 186 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~ 186 (187)
+.|.|.+.|.|.|.+.|+++|..+..... ......|.|.++..+|+|.|.|.|.|..|.. +..+.+.+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~~~v 71 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKL-EKRLTFTLVV 71 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccE-EEEEEEEEEC
Confidence 36899999999999999999998865533 3356789999999999999999999999987 5777777653
No 31
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.66 E-value=3.4e-15 Score=88.62 Aligned_cols=84 Identities=24% Similarity=0.516 Sum_probs=67.6
Q ss_pred CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEEe----CcEEEEecCCCCCCeEEEEEEec
Q psy15738 96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSYS----GNSLTVRHTNRHSAGIYLCVANN 170 (187)
Q Consensus 96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~~----~~~l~i~~~~~~d~g~y~C~~~n 170 (187)
||.+. ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... +.... .+.|.|.++..+|+|.|.|.|.|
T Consensus 3 ~~~~~--~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 80 (92)
T cd05747 3 PATIL--TKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVEN 80 (92)
T ss_pred CCccc--ccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEc
Confidence 55553 3355678899999999999999999999999999877543 22221 35899999999999999999999
Q ss_pred CCCCcceeeEEE
Q psy15738 171 MVGSSAAASIAL 182 (187)
Q Consensus 171 ~~g~~~s~~~~l 182 (187)
..|.. +..+.|
T Consensus 81 ~~G~~-~~~~~l 91 (92)
T cd05747 81 SEGKQ-EAQFTL 91 (92)
T ss_pred CCCCE-eEEEEe
Confidence 99987 566665
No 32
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.65 E-value=2.3e-15 Score=88.98 Aligned_cols=77 Identities=22% Similarity=0.401 Sum_probs=64.1
Q ss_pred eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE-----EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738 107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS-----YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA 181 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 181 (187)
...+..|+.+.|.|.+.|.|.|.+.|++++..+...... .....|.|.++..+|.|.|.|.|.|..|.. +..+.
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~-~~~~~ 87 (90)
T cd04972 9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA-NVSVQ 87 (90)
T ss_pred CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce-eEEEE
Confidence 345789999999999999999999999999877544321 123579999999999999999999999998 57877
Q ss_pred EEE
Q psy15738 182 LHV 184 (187)
Q Consensus 182 l~v 184 (187)
|.|
T Consensus 88 L~v 90 (90)
T cd04972 88 VTV 90 (90)
T ss_pred EeC
Confidence 764
No 33
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.65 E-value=1.3e-15 Score=86.52 Aligned_cols=68 Identities=32% Similarity=0.586 Sum_probs=55.9
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeCCCC--cEEEe-Cc----EEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNLPGG--EYSYS-GN----SLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~~-~~----~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
+.|.|.+.|.|.|.+.|++++..+... +.... .. .|.|.++..+|+|.|.|.|.|..|.. +.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV-SCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEEeC
Confidence 468999999999999999999887543 22221 11 69999999999999999999999998 57887765
No 34
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.65 E-value=5.6e-15 Score=87.57 Aligned_cols=71 Identities=27% Similarity=0.599 Sum_probs=58.6
Q ss_pred CCcEEEEeEeccCCCCcEEEEeCCeeCCC--CcEEEeCcEEEEecCC-CCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738 113 GYSVTLECKADGNPVPNITWTRKNNNLPG--GEYSYSGNSLTVRHTN-RHSAGIYLCVANNMVGSSAAASIALH 183 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~--~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~s~~~~l~ 183 (187)
+..+.|.|.+.|.|.|.++|++++..+.. .++...++.|.|.++. .+|+|.|.|.|.|..|...+..+.|.
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence 34799999999999999999999987742 3344557889999885 58999999999999999877676653
No 35
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.65 E-value=2.2e-15 Score=85.56 Aligned_cols=71 Identities=28% Similarity=0.609 Sum_probs=59.7
Q ss_pred CCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGE-YS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
|+++.|.|.+.|.|.|.+.|++++..+.... .. ...+.|.|.+++.+|+|.|.|.|.|..|.. +.++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKA-NSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCce-EEEEEEEC
Confidence 6789999999999999999999998875432 22 235789999999999999999999999988 57777764
No 36
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.64 E-value=6.7e-15 Score=88.74 Aligned_cols=87 Identities=34% Similarity=0.675 Sum_probs=64.1
Q ss_pred CCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-----c-E-EEeCcEEEEe-----cCCCCCCeE
Q psy15738 96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-----E-Y-SYSGNSLTVR-----HTNRHSAGI 163 (187)
Q Consensus 96 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-----~-~-~~~~~~l~i~-----~~~~~d~g~ 163 (187)
||.+. ..+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+... . . ....+.+.+. .+..+|+|.
T Consensus 1 ~P~i~--~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~ 78 (100)
T cd07693 1 PPRIV--EHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV 78 (100)
T ss_pred CCeEE--ecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEE
Confidence 34443 3345677889999999999999999999999999887551 1 1 1122322222 236889999
Q ss_pred EEEEEecCCCCcceeeEEEEE
Q psy15738 164 YLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 164 y~C~~~n~~g~~~s~~~~l~v 184 (187)
|.|.|.|..|...+..+.|.|
T Consensus 79 Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 79 YVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEccccceecceEEEEe
Confidence 999999999996678888876
No 37
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.64 E-value=5.6e-15 Score=88.54 Aligned_cols=75 Identities=33% Similarity=0.625 Sum_probs=60.3
Q ss_pred EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC------cEEE----eCcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738 109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG------EYSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAA 178 (187)
Q Consensus 109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~------~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~ 178 (187)
....|+.+.|.|.+.|.|.|.+.|++++..+... +... ..+.|.|.++..+|.|.|.|.|.|..|.. +.
T Consensus 13 ~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~ 91 (97)
T cd05869 13 AMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQD-SQ 91 (97)
T ss_pred EEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCe-eE
Confidence 3455899999999999999999999988665322 1111 12579999999999999999999999998 68
Q ss_pred eEEEEE
Q psy15738 179 SIALHV 184 (187)
Q Consensus 179 ~~~l~v 184 (187)
++.|.|
T Consensus 92 ~~~l~v 97 (97)
T cd05869 92 SMYLEV 97 (97)
T ss_pred EEEEEC
Confidence 887765
No 38
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.64 E-value=5.7e-15 Score=86.60 Aligned_cols=79 Identities=29% Similarity=0.572 Sum_probs=65.0
Q ss_pred ceEEEecCCcEEEEeEe-ccCCCCcEEEEeCCeeCCCC--cEE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738 106 GKVEVKKGYSVTLECKA-DGNPVPNITWTRKNNNLPGG--EYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA 181 (187)
Q Consensus 106 ~~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~--~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 181 (187)
....+.+|+.+.|.|.+ .|.|.|.+.|++++..+... +.. ...+.|.|.++..+|+|.|.|.|.|..|...+..+.
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~ 83 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAAR 83 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEE
Confidence 34677899999999998 78899999999999877542 222 235789999999999999999999999987667777
Q ss_pred EEE
Q psy15738 182 LHV 184 (187)
Q Consensus 182 l~v 184 (187)
|.|
T Consensus 84 l~V 86 (86)
T cd05724 84 LSV 86 (86)
T ss_pred EEC
Confidence 654
No 39
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.64 E-value=2.4e-15 Score=86.60 Aligned_cols=75 Identities=24% Similarity=0.374 Sum_probs=60.7
Q ss_pred CceEEEecCCcEEEEeEeccCCCC-cEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738 105 AGKVEVKKGYSVTLECKADGNPVP-NITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL 182 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l 182 (187)
+....+.+|+.+.|.|.+.|.|.| .|.|+++|.++... .....+.|.+.++. |.|.|.|.|.|..|...++.+.|
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-~~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-PAPSPSVLNVPGLN--ETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-CCCCCCEEEEcccc--CCeEEEEEEEeccCcEEeeeEEe
Confidence 445678899999999999999999 79999999987541 12234678888774 78999999999999886666665
No 40
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.64 E-value=3e-15 Score=87.58 Aligned_cols=76 Identities=26% Similarity=0.457 Sum_probs=63.0
Q ss_pred EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE----EE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY----SY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA 181 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~----~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 181 (187)
+.+.+|+.+.|.|.+.|.|.|.+.|++++..+..... .. ....|.|.++..+|.|.|.|.|.|..|.. ...+.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEE-EEEEE
Confidence 4577899999999999999999999999988754422 11 23468999999999999999999999988 57887
Q ss_pred EEE
Q psy15738 182 LHV 184 (187)
Q Consensus 182 l~v 184 (187)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 765
No 41
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.64 E-value=2e-15 Score=85.20 Aligned_cols=68 Identities=28% Similarity=0.564 Sum_probs=56.8
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeCCCCcEE--EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNLPGGEYS--YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
+.|.|.+.|.|.|.+.|++++..+...... .....|.|.++..+|+|.|.|.|.|..|.. +..+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA-RHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence 368999999999999999998776543322 245789999999999999999999999988 57777766
No 42
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.64 E-value=1.3e-14 Score=86.34 Aligned_cols=71 Identities=24% Similarity=0.480 Sum_probs=58.4
Q ss_pred CCcEEEEeEeccCCCCcEEEEeCCeeCCCC---cEEEeCcEEEEecCC-CCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738 113 GYSVTLECKADGNPVPNITWTRKNNNLPGG---EYSYSGNSLTVRHTN-RHSAGIYLCVANNMVGSSAAASIALH 183 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~---~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~s~~~~l~ 183 (187)
|+.+.|.|.+.|.|.|.++|+++|..+... .+....+.|.|.++. ..|.|.|.|.|.|..|...++.+.|.
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR 93 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence 468999999999999999999999887532 333456789998865 58999999999999999877776653
No 43
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.64 E-value=9e-15 Score=86.99 Aligned_cols=71 Identities=31% Similarity=0.604 Sum_probs=58.6
Q ss_pred cCCcEEEEeEeccCCCCcEEEEeCCeeCCCC---cEEEeCcEEEEecCC-CCCCeEEEEEEecCCCCcceeeEEE
Q psy15738 112 KGYSVTLECKADGNPVPNITWTRKNNNLPGG---EYSYSGNSLTVRHTN-RHSAGIYLCVANNMVGSSAAASIAL 182 (187)
Q Consensus 112 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~---~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~s~~~~l 182 (187)
+|+.+.|.|.+.|.|.|.+.|++++..+... ++....+.|.|.++. ..|.|.|.|.|.|..|...+..+.|
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 4789999999999999999999999887533 223356789998875 6899999999999999886666655
No 44
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.64 E-value=2.9e-15 Score=84.12 Aligned_cols=68 Identities=37% Similarity=0.759 Sum_probs=57.3
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeCCCCcEE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNLPGGEYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
+.|.|.+.|.|+|.+.|++++..+...+.. .....|.|.++..+|+|.|.|.|.|..|.. +..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKI-EASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcE-EEEEEEEC
Confidence 468999999999999999998776555433 346789999999999999999999999988 57777764
No 45
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.63 E-value=4.9e-15 Score=84.34 Aligned_cols=69 Identities=30% Similarity=0.544 Sum_probs=57.1
Q ss_pred cEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 115 SVTLECKADGNPVPNITWTRKNNNLPGGE-YSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 115 ~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
.+.|.|.+.|.|.|.+.|++++..+.... ... ....|.|.++..+|+|.|.|.|.|..|.. +.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEEC
Confidence 36899999999999999999999874432 222 23579999999999999999999999988 57877764
No 46
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.63 E-value=7.1e-15 Score=87.77 Aligned_cols=80 Identities=30% Similarity=0.533 Sum_probs=63.9
Q ss_pred CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc---E-EEeCcEEEEecC-----CCCCCeEEEEEEecC-CCC
Q psy15738 105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---Y-SYSGNSLTVRHT-----NRHSAGIYLCVANNM-VGS 174 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~---~-~~~~~~l~i~~~-----~~~d~g~y~C~~~n~-~g~ 174 (187)
|....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.... . ....+.+.+.++ ...|.|.|.|.|.|. .|.
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~ 85 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS 85 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence 344567789999999999999999999999998875432 1 224566777666 578999999999999 998
Q ss_pred cceeeEEEEE
Q psy15738 175 SAAASIALHV 184 (187)
Q Consensus 175 ~~s~~~~l~v 184 (187)
..++.+.|.|
T Consensus 86 ~~s~~~~l~v 95 (95)
T cd05722 86 IVSRTARLTV 95 (95)
T ss_pred EEEeeeEEeC
Confidence 8778887765
No 47
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.63 E-value=8.7e-15 Score=85.96 Aligned_cols=73 Identities=25% Similarity=0.408 Sum_probs=61.0
Q ss_pred CCcEEEEeEeccCCCCcEEEEeCCeeCCCC--cEEEe--------CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738 113 GYSVTLECKADGNPVPNITWTRKNNNLPGG--EYSYS--------GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL 182 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~~--------~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l 182 (187)
|+.+.|.|.+.|.|++.+.|++++..+... ++... .+.|.|.++..+|+|.|.|.|.|..|.. +..+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGED-RGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcc-eEEEEE
Confidence 688999999999999999999999877432 22211 1579999999999999999999999998 588888
Q ss_pred EEEe
Q psy15738 183 HVLC 186 (187)
Q Consensus 183 ~v~~ 186 (187)
.|..
T Consensus 80 ~V~~ 83 (88)
T cd05735 80 TVQE 83 (88)
T ss_pred EEeC
Confidence 8864
No 48
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.62 E-value=1.7e-14 Score=86.58 Aligned_cols=78 Identities=28% Similarity=0.569 Sum_probs=61.5
Q ss_pred ceEEEecCCcEEEEeEeccCCCCcEEEEeC--CeeCCC------CcEEE----eCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738 106 GKVEVKKGYSVTLECKADGNPVPNITWTRK--NNNLPG------GEYSY----SGNSLTVRHTNRHSAGIYLCVANNMVG 173 (187)
Q Consensus 106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~--~~~~~~------~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g 173 (187)
....+.+|+.+.|.|.+.|.|.|.+.|++. +..+.. .+... ....|.|.++..+|+|.|.|.|.|..|
T Consensus 9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 88 (98)
T cd05870 9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIG 88 (98)
T ss_pred ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCC
Confidence 356788999999999999999999999994 333221 12221 135799999999999999999999999
Q ss_pred CcceeeEEEEE
Q psy15738 174 SSAAASIALHV 184 (187)
Q Consensus 174 ~~~s~~~~l~v 184 (187)
.. +.++.|.|
T Consensus 89 ~~-~~~~~l~~ 98 (98)
T cd05870 89 GH-QKSMYLDI 98 (98)
T ss_pred cc-eeEEEEeC
Confidence 88 57877764
No 49
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.62 E-value=1.1e-14 Score=88.96 Aligned_cols=74 Identities=23% Similarity=0.425 Sum_probs=60.3
Q ss_pred cCCcEEEEeEeccCCCCcEEEEeCCeeCCCC--cEEE--------eCcEEEEecCC-CCCCeEEEEEEecCCCCcceeeE
Q psy15738 112 KGYSVTLECKADGNPVPNITWTRKNNNLPGG--EYSY--------SGNSLTVRHTN-RHSAGIYLCVANNMVGSSAAASI 180 (187)
Q Consensus 112 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~--------~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~s~~~ 180 (187)
.|..+.|.|.+.|.|+|.+.|++++..+... ++.. ..+.|.|.++. .+|.|.|.|.|.|..|.. +..+
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~~i 100 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGED-SLDI 100 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccC-cEEE
Confidence 4678999999999999999999999887532 2211 13579999987 589999999999999998 5888
Q ss_pred EEEEEe
Q psy15738 181 ALHVLC 186 (187)
Q Consensus 181 ~l~v~~ 186 (187)
.|.|..
T Consensus 101 ~L~~~~ 106 (109)
T cd05773 101 QLVSTS 106 (109)
T ss_pred EEEecC
Confidence 888753
No 50
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.62 E-value=9.3e-15 Score=87.01 Aligned_cols=78 Identities=28% Similarity=0.509 Sum_probs=61.2
Q ss_pred eEEEecCCcEEEEeEeccCCC-CcEEEEe-CCeeCCC-C-cEEE-e----CcEEEEecCCCCCCeEEEEEEecCC-CCcc
Q psy15738 107 KVEVKKGYSVTLECKADGNPV-PNITWTR-KNNNLPG-G-EYSY-S----GNSLTVRHTNRHSAGIYLCVANNMV-GSSA 176 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g~p~-p~~~W~~-~~~~~~~-~-~~~~-~----~~~l~i~~~~~~d~g~y~C~~~n~~-g~~~ 176 (187)
...+..|+.+.|.|.+.|.|. |.+.|++ ++..+.. . +... . .+.|.|.++..+|+|.|+|.|.|.. |..
T Consensus 9 ~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~- 87 (96)
T cd05865 9 QGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGES- 87 (96)
T ss_pred ccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcE-
Confidence 346788999999999999994 7999998 6765543 2 2221 1 2589999999999999999999997 555
Q ss_pred eeeEEEEEE
Q psy15738 177 AASIALHVL 185 (187)
Q Consensus 177 s~~~~l~v~ 185 (187)
+.++.|.|+
T Consensus 88 ~~s~~l~v~ 96 (96)
T cd05865 88 EATVNVKIF 96 (96)
T ss_pred EEEEEEEEC
Confidence 678887763
No 51
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.62 E-value=5e-15 Score=84.22 Aligned_cols=69 Identities=32% Similarity=0.571 Sum_probs=57.0
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeCCC---CcEE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNLPG---GEYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~~~---~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
+.|.|.+.|.|.|.+.|++++..+.. .+.. ...+.|.|.++..+|+|.|.|.|.|..|...+..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 36899999999999999999987752 2222 235689999999999999999999999987677777766
No 52
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.62 E-value=1.3e-14 Score=86.86 Aligned_cols=77 Identities=34% Similarity=0.598 Sum_probs=62.6
Q ss_pred eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC------cEEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738 107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG------EYSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSA 176 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~------~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 176 (187)
...+.+|+.+.|.|.+.|.|.|.+.|++++..+... +... ....|.|.++..+|+|.|.|.|.|..|..
T Consensus 10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~- 88 (96)
T cd05732 10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGD- 88 (96)
T ss_pred ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCc-
Confidence 456789999999999999999999999988654322 1111 12479999999999999999999999998
Q ss_pred eeeEEEEE
Q psy15738 177 AASIALHV 184 (187)
Q Consensus 177 s~~~~l~v 184 (187)
+.++.|.|
T Consensus 89 ~~s~~l~v 96 (96)
T cd05732 89 QQSMYLEV 96 (96)
T ss_pred EEEEEEeC
Confidence 68887764
No 53
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.62 E-value=8.7e-15 Score=83.86 Aligned_cols=70 Identities=36% Similarity=0.757 Sum_probs=56.0
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeCCCCc--EEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcc-eeeEEEEEE
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNLPGGE--YSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSA-AASIALHVL 185 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~--~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~v~ 185 (187)
+.|.|.+.|.|.|.+.|+++|.++.... ... ..+.|.|.++..+|+|.|.|.|.|..|... +..++|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 4789999999999999999999875442 222 235899999999999999999999999863 346666654
No 54
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.62 E-value=7e-15 Score=83.87 Aligned_cols=66 Identities=26% Similarity=0.481 Sum_probs=54.4
Q ss_pred EEEeEeccCCCCcEEEEeCCeeCCCCcEE------E----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738 117 TLECKADGNPVPNITWTRKNNNLPGGEYS------Y----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH 183 (187)
Q Consensus 117 ~l~C~~~g~p~p~~~W~~~~~~~~~~~~~------~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~ 183 (187)
.+.|.+.|.|.|.++|+++|..+....+. . ..+.|.|.++..+|+|.|.|.|.|..|.. ++++.++
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED-EKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc-ceEEEee
Confidence 47899999999999999999998655431 0 13579999999999999999999999988 4676654
No 55
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.61 E-value=8.5e-15 Score=83.39 Aligned_cols=68 Identities=31% Similarity=0.512 Sum_probs=55.6
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeCCCC--cEEE-eC----cEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNLPGG--EYSY-SG----NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~-~~----~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
+.|.|.+.|.|.|.+.|++++..+... +... .. ..|.|.++..+|+|.|.|.|.|..|.. +.++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEeC
Confidence 468999999999999999999887632 2221 11 269999999999999999999999988 57777764
No 56
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.61 E-value=1.8e-14 Score=82.94 Aligned_cols=76 Identities=21% Similarity=0.497 Sum_probs=61.6
Q ss_pred eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
...+.+|+.+.|.|.+.+. .+.+.|+++|..+... +.......|.|.++..+|+|.|.|.|.|..|.. ...+.|.|
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~-~~~~~v~V 79 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSD-TTYFSVNV 79 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcc-cEEEEEeC
Confidence 3567899999999999986 5689999999887654 333456789999999999999999999999876 45655543
No 57
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.61 E-value=1.9e-14 Score=85.25 Aligned_cols=79 Identities=25% Similarity=0.509 Sum_probs=63.8
Q ss_pred CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EE--Ee---CcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738 105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YS--YS---GNSLTVRHTNRHSAGIYLCVANNMVGSSAAA 178 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~--~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~ 178 (187)
|....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... +. .. ...|.|.++..+|+|.|.|.|.|..|.. +.
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~ 86 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE-TV 86 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce-ee
Confidence 345678999999999999999999999999998775432 21 11 1379999999999999999999999988 46
Q ss_pred eEEEEE
Q psy15738 179 SIALHV 184 (187)
Q Consensus 179 ~~~l~v 184 (187)
.+.|.|
T Consensus 87 ~~~v~~ 92 (92)
T cd05891 87 DVTVSV 92 (92)
T ss_pred EEEEEC
Confidence 766654
No 58
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.60 E-value=5.5e-15 Score=82.89 Aligned_cols=66 Identities=30% Similarity=0.662 Sum_probs=55.4
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeCCCC-cEEE-eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNLPGG-EYSY-SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL 182 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l 182 (187)
+.|.|.+.|.|.|.+.|++++..+... +... ..+.|.|.++..+|+|.|.|.|.|..|.. +.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYA-SVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcE-EEEEEe
Confidence 468999999999999999999877543 3322 36789999999999999999999999988 567665
No 59
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.60 E-value=1.9e-14 Score=80.54 Aligned_cols=67 Identities=28% Similarity=0.508 Sum_probs=53.9
Q ss_pred CCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEY-SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL 182 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l 182 (187)
|+.+.|.|.+.|.|.|.+.|++++..+..... ......|.|.++. |.|.|.|.|.|..|.. ..++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~-~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMI-EATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEE-EEEEEE
Confidence 67899999999999999999999988754432 2234578888874 7899999999999987 466655
No 60
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.59 E-value=1e-14 Score=82.38 Aligned_cols=68 Identities=31% Similarity=0.645 Sum_probs=56.2
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeCCCCcEE--EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNLPGGEYS--YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
+.|.|.+.|.|.|.+.|++++..+...... .....|.|.++..+|+|.|.|.|.|..|.. +..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence 468999999999999999998876544322 234689999999999999999999999987 57777765
No 61
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.59 E-value=1.8e-14 Score=85.13 Aligned_cols=72 Identities=32% Similarity=0.637 Sum_probs=59.2
Q ss_pred CCcEEEEeEeccCCCCcEEEEeCCeeC---------CCCcEEE-eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738 113 GYSVTLECKADGNPVPNITWTRKNNNL---------PGGEYSY-SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL 182 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~~~~~---------~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l 182 (187)
|+.+.|.|.+.|.|.|.+.|++++... ...++.. ..+.|.|.++..+|+|.|.|.|.|..|.. +..+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l 79 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSI-LTKAYL 79 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCce-EEEEEE
Confidence 678999999999999999999988642 1122222 35689999999999999999999999998 588888
Q ss_pred EEE
Q psy15738 183 HVL 185 (187)
Q Consensus 183 ~v~ 185 (187)
.|.
T Consensus 80 ~V~ 82 (90)
T cd05726 80 EVT 82 (90)
T ss_pred EEe
Confidence 885
No 62
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.59 E-value=9.7e-15 Score=86.36 Aligned_cols=79 Identities=43% Similarity=0.777 Sum_probs=66.4
Q ss_pred CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcceee
Q psy15738 105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAAS 179 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~ 179 (187)
+....+..|+.+.|.|.+.|.|.|.+.|++++..+.... ... ....|.|.++...|.|.|.|.+.|..|.. +..
T Consensus 7 ~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~-~~~ 85 (90)
T PF07679_consen 7 PKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEA-TAS 85 (90)
T ss_dssp SSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEE-EEE
T ss_pred cCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEE-EEE
Confidence 456789999999999999999999999999998876542 221 24679999999999999999999998877 577
Q ss_pred EEEEE
Q psy15738 180 IALHV 184 (187)
Q Consensus 180 ~~l~v 184 (187)
+.|.|
T Consensus 86 ~~l~V 90 (90)
T PF07679_consen 86 VNLTV 90 (90)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 77765
No 63
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.59 E-value=2.4e-14 Score=81.52 Aligned_cols=71 Identities=31% Similarity=0.666 Sum_probs=58.0
Q ss_pred CCcEEEEeEeccCCCCcEEEEe-CCeeCCCCcE--EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 113 GYSVTLECKADGNPVPNITWTR-KNNNLPGGEY--SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~-~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
|+.+.|.|.+.|.|.|.+.|++ ++..+..... ....+.|.|.++...|+|.|.|.|.|..|.. +..+.|+|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEA-TATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEEEC
Confidence 6789999999999999999997 5655543322 2345789999999999999999999999987 57777764
No 64
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.59 E-value=1.7e-14 Score=85.14 Aligned_cols=72 Identities=31% Similarity=0.537 Sum_probs=56.3
Q ss_pred CCcEEEEeEeccCCCCcEEEEeCC----eeCCCC--cE--EE----------eCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738 113 GYSVTLECKADGNPVPNITWTRKN----NNLPGG--EY--SY----------SGNSLTVRHTNRHSAGIYLCVANNMVGS 174 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~~----~~~~~~--~~--~~----------~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 174 (187)
|+.+.|.|.+.|.|.|.++|++++ ..+... .. .. ....|.|.+++.+|.|.|.|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 578999999999999999999964 221110 00 00 1247999999999999999999999999
Q ss_pred cceeeEEEEEE
Q psy15738 175 SAAASIALHVL 185 (187)
Q Consensus 175 ~~s~~~~l~v~ 185 (187)
. +.++.|.|+
T Consensus 81 ~-~~sa~L~V~ 90 (90)
T cd04974 81 S-HHSAWLTVL 90 (90)
T ss_pred c-cCCEEEEeC
Confidence 8 589898874
No 65
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.59 E-value=1.6e-14 Score=82.47 Aligned_cols=69 Identities=30% Similarity=0.611 Sum_probs=55.2
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeC-CC---CcEE--EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNL-PG---GEYS--YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~-~~---~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 185 (187)
+.|.|.+.|.|.|.+.|++++... .. .+.. .....|.|.++..+|+|.|.|.|.|..|.. +..+.|.|+
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V~ 75 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTVL 75 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEEC
Confidence 368999999999999999998632 11 1111 134689999999999999999999999987 688888873
No 66
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.58 E-value=2.1e-14 Score=83.40 Aligned_cols=75 Identities=32% Similarity=0.552 Sum_probs=60.5
Q ss_pred EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE-E--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS-Y--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~-~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
....|+.+.|.|.+.|.|.|.+.|++++..+...... . ....|.|.++..+|+|.|.|.+.|..|.. +..+.|.|
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~v 82 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKVDV 82 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEEeC
Confidence 4567999999999999999999999999876443221 1 23579999999999999999999999987 56766653
No 67
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.58 E-value=4.7e-14 Score=82.24 Aligned_cols=73 Identities=27% Similarity=0.443 Sum_probs=59.5
Q ss_pred CcEEEEeEeccCCCC--cEEEEeCCeeCCCC----cEEE-----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738 114 YSVTLECKADGNPVP--NITWTRKNNNLPGG----EYSY-----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL 182 (187)
Q Consensus 114 ~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~----~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l 182 (187)
+.+.|.|.+.|.|.| .+.|++++..+... .+.. ..+.|.|.+++..|.|.|.|.|.|..|.. +.++.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCE-EEEEEE
Confidence 367899999999987 47999999876432 2111 24689999999999999999999999998 689999
Q ss_pred EEEeC
Q psy15738 183 HVLCK 187 (187)
Q Consensus 183 ~v~~~ 187 (187)
.|..+
T Consensus 80 ~V~~~ 84 (85)
T cd05854 80 VVRGP 84 (85)
T ss_pred EEECC
Confidence 98754
No 68
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.58 E-value=2.5e-14 Score=82.51 Aligned_cols=66 Identities=27% Similarity=0.462 Sum_probs=53.4
Q ss_pred EEEeEeccCCCCcEEEEeCCeeCCCCcEE---E---------eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738 117 TLECKADGNPVPNITWTRKNNNLPGGEYS---Y---------SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH 183 (187)
Q Consensus 117 ~l~C~~~g~p~p~~~W~~~~~~~~~~~~~---~---------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~ 183 (187)
.+.|.+.|.|.|.++|+++|..+...... . ..+.|.|.++...|+|.|.|.|.|..|.. +..+.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD-SKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe-eeEEEee
Confidence 46899999999999999999988654321 0 13469999999999999999999999987 4665543
No 69
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.58 E-value=4.6e-14 Score=83.24 Aligned_cols=77 Identities=30% Similarity=0.528 Sum_probs=61.5
Q ss_pred eEEEecCCcEEEEeEeccCCCCcEEEEeC-CeeCCCC-cEEE-eC---cEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738 107 KVEVKKGYSVTLECKADGNPVPNITWTRK-NNNLPGG-EYSY-SG---NSLTVRHTNRHSAGIYLCVANNMVGSSAAASI 180 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~-~~~~~~~-~~~~-~~---~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~ 180 (187)
...+..|+++.|.|.+.|.|. .+.|+++ +..+... +... .. ..|.|.++..+|+|.|.|.|.|..|.....++
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i 87 (92)
T cd05866 9 KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV 87 (92)
T ss_pred ceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEE
Confidence 456889999999999999987 8999984 5555433 3332 22 37999999999999999999999998766777
Q ss_pred EEEE
Q psy15738 181 ALHV 184 (187)
Q Consensus 181 ~l~v 184 (187)
.|.+
T Consensus 88 ~l~~ 91 (92)
T cd05866 88 VLEI 91 (92)
T ss_pred EEEE
Confidence 7765
No 70
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.57 E-value=2.8e-14 Score=80.03 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=50.2
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeCCCC--cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNLPGG--EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSS 175 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 175 (187)
+.|.|.+.|.|+|++.|++++.++... ........|.|.++..+|+|.|+|.|.|.....
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~ 62 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNL 62 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccce
Confidence 368999999999999999999987654 233345689999999999999999999986554
No 71
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.57 E-value=5e-14 Score=81.53 Aligned_cols=73 Identities=23% Similarity=0.366 Sum_probs=59.8
Q ss_pred CcEEEEeEecc--CCCCcEEEEeCCeeCCC---C-cEEE-----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738 114 YSVTLECKADG--NPVPNITWTRKNNNLPG---G-EYSY-----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL 182 (187)
Q Consensus 114 ~~~~l~C~~~g--~p~p~~~W~~~~~~~~~---~-~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l 182 (187)
+++.|.|.+.+ .+++.+.|+++|..+.. + ++.. ..+.|.|.++...|+|.|+|.|.|..+.. +.++.|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEEE
Confidence 46789999976 45778999999998852 1 2222 34689999999999999999999999999 699999
Q ss_pred EEEeC
Q psy15738 183 HVLCK 187 (187)
Q Consensus 183 ~v~~~ 187 (187)
.|.++
T Consensus 80 ~V~~p 84 (85)
T cd05853 80 IVRGP 84 (85)
T ss_pred EEecC
Confidence 99864
No 72
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.56 E-value=3.5e-14 Score=81.57 Aligned_cols=69 Identities=29% Similarity=0.461 Sum_probs=55.6
Q ss_pred CCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-EEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGE-YSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL 182 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l 182 (187)
|+.+.|.|.+.|.|.|.+.|++++..+.... ... ....|.|.++..+|.|.|.|.|.|..|... ....+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~~ 74 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVF-GIPDG 74 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEE-ecccE
Confidence 6789999999999999999999988765432 221 125799999999999999999999999873 44333
No 73
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.56 E-value=4e-14 Score=81.59 Aligned_cols=69 Identities=38% Similarity=0.688 Sum_probs=54.7
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeC---------CCCcEE-EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNL---------PGGEYS-YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~---------~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
+.|.|.+.|.|.|.+.|++++... ..++.. ...+.|.|.++..+|+|.|.|.|.|..|...+..+.|.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 468999999999999999975321 112222 245789999999999999999999999988777877764
No 74
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.55 E-value=5.4e-14 Score=82.21 Aligned_cols=73 Identities=32% Similarity=0.470 Sum_probs=59.2
Q ss_pred CcEEEEeEeccCCCC--cEEEEeCCeeCCCCc----E--E---EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738 114 YSVTLECKADGNPVP--NITWTRKNNNLPGGE----Y--S---YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL 182 (187)
Q Consensus 114 ~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~----~--~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l 182 (187)
+++.|.|.+.|.|.| .+.|+++|..+.... + . ...+.|.|.+++..|+|.|.|.|.|..|.. +..+.|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcE-EEEEEE
Confidence 467899999999987 568999998764321 1 1 134689999999999999999999999988 689999
Q ss_pred EEEeC
Q psy15738 183 HVLCK 187 (187)
Q Consensus 183 ~v~~~ 187 (187)
.|.++
T Consensus 80 ~V~~p 84 (85)
T cd04970 80 IVRGP 84 (85)
T ss_pred EEECC
Confidence 88754
No 75
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.55 E-value=4.1e-14 Score=83.61 Aligned_cols=72 Identities=29% Similarity=0.473 Sum_probs=56.2
Q ss_pred CCcEEEEeEeccCCCCcEEEEeC----CeeCCCC-c--EE-E----------eCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738 113 GYSVTLECKADGNPVPNITWTRK----NNNLPGG-E--YS-Y----------SGNSLTVRHTNRHSAGIYLCVANNMVGS 174 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~----~~~~~~~-~--~~-~----------~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 174 (187)
|+++.|.|.+.|.|.|.+.|+++ +..+... . .. . ..+.|.|.+++.+|+|.|.|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 3322211 1 00 0 0147999999999999999999999999
Q ss_pred cceeeEEEEEE
Q psy15738 175 SAAASIALHVL 185 (187)
Q Consensus 175 ~~s~~~~l~v~ 185 (187)
. +.++.|.|+
T Consensus 81 ~-~~~a~L~V~ 90 (90)
T cd05858 81 S-HHSAWLTVL 90 (90)
T ss_pred c-cceEEEEEC
Confidence 8 588888873
No 76
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.54 E-value=6e-14 Score=80.36 Aligned_cols=67 Identities=28% Similarity=0.627 Sum_probs=52.9
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeCCCC---cEE--EeCcEEEEecCCC----CCCeEEEEEEecCCCCcceeeEEE
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNLPGG---EYS--YSGNSLTVRHTNR----HSAGIYLCVANNMVGSSAAASIAL 182 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~---~~~--~~~~~l~i~~~~~----~d~g~y~C~~~n~~g~~~s~~~~l 182 (187)
+.|.|.+.|.|.|.++|++++..+... ... ...+.|.|.++.. +|.|.|.|.|.|..|...+..+.|
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 468999999999999999999877432 222 2357899988754 689999999999999886666554
No 77
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.54 E-value=9.9e-14 Score=82.30 Aligned_cols=77 Identities=26% Similarity=0.369 Sum_probs=61.7
Q ss_pred eEEEecCCcEEEEeEecc-----CCCCcEEEEeCCeeCCC-----CcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738 107 KVEVKKGYSVTLECKADG-----NPVPNITWTRKNNNLPG-----GEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA 176 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g-----~p~p~~~W~~~~~~~~~-----~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 176 (187)
...+.+|+.+.|.|.+.| .|.|.+.|++++..+.. .+.......|.|.++..+|+|.|.|.+.|..|..
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~- 86 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM- 86 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE-
Confidence 456778999999999998 68889999999865422 1222245789999999999999999999999987
Q ss_pred eeeEEEEE
Q psy15738 177 AASIALHV 184 (187)
Q Consensus 177 s~~~~l~v 184 (187)
+..+.|.|
T Consensus 87 ~~~~~L~v 94 (94)
T cd05756 87 KVSISLTV 94 (94)
T ss_pred EEEEEEEC
Confidence 46777664
No 78
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.53 E-value=1.1e-13 Score=80.15 Aligned_cols=71 Identities=27% Similarity=0.540 Sum_probs=55.7
Q ss_pred CCcEEEEeEeccCCCCcEEEEeCCee-----CCCCc----E-EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738 113 GYSVTLECKADGNPVPNITWTRKNNN-----LPGGE----Y-SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL 182 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~~~~-----~~~~~----~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l 182 (187)
|+.+.|.|.+.|.|.|.+.|++++.. ..... . ......|.|.++..+|+|.|.|.|.|..|.. ...+.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLL-RANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceE-EEEEEE
Confidence 67899999999999999999997421 11111 1 1123679999999999999999999999988 578887
Q ss_pred EE
Q psy15738 183 HV 184 (187)
Q Consensus 183 ~v 184 (187)
.|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 65
No 79
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.52 E-value=3.9e-13 Score=79.57 Aligned_cols=67 Identities=30% Similarity=0.668 Sum_probs=54.6
Q ss_pred CCcEEEEeEeccCCCCcEEEEeCCeeCCC---CcEEEeCcEEEEecCCC-CCCeEEEEEEecCCCCcceee
Q psy15738 113 GYSVTLECKADGNPVPNITWTRKNNNLPG---GEYSYSGNSLTVRHTNR-HSAGIYLCVANNMVGSSAAAS 179 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~---~~~~~~~~~l~i~~~~~-~d~g~y~C~~~n~~g~~~s~~ 179 (187)
+..+.|.|.+.|.|.|.++|++++..+.. .......+.|.|.++.. +|.|.|.|.|.|..|...|..
T Consensus 19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~~ 89 (91)
T cd04967 19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSRE 89 (91)
T ss_pred CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEecc
Confidence 45799999999999999999999987732 22334567899988875 899999999999999875544
No 80
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.51 E-value=1.5e-13 Score=78.64 Aligned_cols=67 Identities=25% Similarity=0.622 Sum_probs=51.6
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeCCCC---cEEE--eCcEEEEecCCCC----CCeEEEEEEecCCCCcceeeEEE
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNLPGG---EYSY--SGNSLTVRHTNRH----SAGIYLCVANNMVGSSAAASIAL 182 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~---~~~~--~~~~l~i~~~~~~----d~g~y~C~~~n~~g~~~s~~~~l 182 (187)
+.|.|.+.|.|.|.++|++++..+... .... ..+.|.|..+..+ |.|.|.|.|.|..|...+..+.|
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 468999999999999999999876321 2222 3577888777643 68999999999999886666654
No 81
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.51 E-value=4.5e-13 Score=79.34 Aligned_cols=77 Identities=30% Similarity=0.549 Sum_probs=58.9
Q ss_pred eEEEecCCcEEEEeEeccCCCCcEEEEe-CCeeCCC-CcEE-Ee----CcEEEEecCCCCCCeEEEEEEecCCCCcceee
Q psy15738 107 KVEVKKGYSVTLECKADGNPVPNITWTR-KNNNLPG-GEYS-YS----GNSLTVRHTNRHSAGIYLCVANNMVGSSAAAS 179 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~-~~~~~~~-~~~~-~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~ 179 (187)
...+..|+++.|.|.+.|.| +.+.|++ ++..+.. .+.. .. ...|.|.++..+|+|.|.|.|.|..|.....+
T Consensus 9 ~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~s 87 (92)
T cd04977 9 QGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEAT 87 (92)
T ss_pred cEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeE
Confidence 45688999999999999986 4999997 5554433 2222 11 24799999999999999999999977654677
Q ss_pred EEEEE
Q psy15738 180 IALHV 184 (187)
Q Consensus 180 ~~l~v 184 (187)
+.|.|
T Consensus 88 v~l~~ 92 (92)
T cd04977 88 VNLKI 92 (92)
T ss_pred EEEEC
Confidence 77654
No 82
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.50 E-value=9.2e-13 Score=79.05 Aligned_cols=76 Identities=33% Similarity=0.480 Sum_probs=60.4
Q ss_pred ceEEEecCCcEEEEeEeccCCCC-cEEEEeCCeeCCCC---cEEEe--------CcEEEEecCCCCC-CeEEEEEEecCC
Q psy15738 106 GKVEVKKGYSVTLECKADGNPVP-NITWTRKNNNLPGG---EYSYS--------GNSLTVRHTNRHS-AGIYLCVANNMV 172 (187)
Q Consensus 106 ~~~~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~---~~~~~--------~~~l~i~~~~~~d-~g~y~C~~~n~~ 172 (187)
....+..|+.+.|.|.+.|.|.| .+.|++++..+... ++... .+.|.|.++..+| .|.|.|.|.|..
T Consensus 9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~ 88 (98)
T cd05758 9 ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSF 88 (98)
T ss_pred CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCC
Confidence 34567889999999999999999 59999999876532 33221 1479999999855 899999999999
Q ss_pred CCcceeeEEE
Q psy15738 173 GSSAAASIAL 182 (187)
Q Consensus 173 g~~~s~~~~l 182 (187)
|.. ...+.|
T Consensus 89 G~~-~~~~~L 97 (98)
T cd05758 89 GSG-TAIISL 97 (98)
T ss_pred Ccc-cEEEEe
Confidence 988 466665
No 83
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.50 E-value=4.9e-13 Score=78.82 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=62.4
Q ss_pred ceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-----cEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738 106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-----EYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASI 180 (187)
Q Consensus 106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~ 180 (187)
....+.+|+.+.|.|.+.+ |.+.+.|++++..+... +.......|.|.++..+|+|.|.|.|.+..+...+.++
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~ 82 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATY 82 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEE
Confidence 3456788999999999977 88899999999766443 22334467999999999999999999987766556777
Q ss_pred EEEEE
Q psy15738 181 ALHVL 185 (187)
Q Consensus 181 ~l~v~ 185 (187)
+|.|.
T Consensus 83 ~l~V~ 87 (89)
T cd04979 83 SLNVL 87 (89)
T ss_pred EEEEe
Confidence 77764
No 84
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.50 E-value=3.8e-13 Score=76.89 Aligned_cols=68 Identities=26% Similarity=0.596 Sum_probs=56.1
Q ss_pred EEEeEeccCCCCcEEEEeCCeeCCCCc---EEE--eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738 117 TLECKADGNPVPNITWTRKNNNLPGGE---YSY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185 (187)
Q Consensus 117 ~l~C~~~g~p~p~~~W~~~~~~~~~~~---~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 185 (187)
.|.|.+.|.|.|.+.|++++..+.... ... ....|.|.++..+|.|.|.|.+.|..|.. ...+.|.|.
T Consensus 2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFVE 74 (76)
T ss_pred EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEEE
Confidence 689999999999999999998775431 211 23579999999999999999999999998 478888774
No 85
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.49 E-value=5.8e-13 Score=76.15 Aligned_cols=67 Identities=31% Similarity=0.637 Sum_probs=51.4
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeCC---CCcEEE--eCcEEEEecCCC----CCCeEEEEEEecCCCCcceeeEEE
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNLP---GGEYSY--SGNSLTVRHTNR----HSAGIYLCVANNMVGSSAAASIAL 182 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~~---~~~~~~--~~~~l~i~~~~~----~d~g~y~C~~~n~~g~~~s~~~~l 182 (187)
+.|.|.+.|.|.|.+.|++++..+. ..+... ..+.|.|..+.. .|.|.|.|.|.|..|...+..+.|
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 3689999999999999999998653 222222 357888887642 368999999999999887666554
No 86
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.47 E-value=7.5e-13 Score=75.72 Aligned_cols=71 Identities=24% Similarity=0.415 Sum_probs=57.1
Q ss_pred CceEEEecCCcEEEEeEeccCCC-CcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738 105 AGKVEVKKGYSVTLECKADGNPV-PNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH 183 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p~-p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~ 183 (187)
|+...+.+|+.+.|.|.+.+.|. +.+.|++++..+.. ..+.|.|.++ .+|+|.|.|.|.|. ..|..++|.
T Consensus 7 P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-----~~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~v~l~ 77 (78)
T cd05752 7 PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-----TTNSYRIRAA-NNDSGEYRCQTQGS---SLSDPVHLE 77 (78)
T ss_pred CCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-----cCCeEEEeec-ccCCEEeEEECCCC---cCCCCEEEe
Confidence 44467889999999999999876 46999999987632 3478899999 99999999999985 326777776
Q ss_pred E
Q psy15738 184 V 184 (187)
Q Consensus 184 v 184 (187)
|
T Consensus 78 V 78 (78)
T cd05752 78 V 78 (78)
T ss_pred C
Confidence 5
No 87
>KOG4222|consensus
Probab=99.47 E-value=9.1e-13 Score=104.49 Aligned_cols=110 Identities=20% Similarity=0.309 Sum_probs=86.6
Q ss_pred EEEEEecccceeEE--eeccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeC--C
Q psy15738 65 ILAMEKEEEERKKK--KKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL--P 140 (187)
Q Consensus 65 ~~~v~~~d~g~y~c--~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~--~ 140 (187)
|.+++..|.|.|.| .+..+.....+.|+|..+|.+. ..+....+..|..++|+|.+.|.|+|.+.|.+.+... .
T Consensus 282 i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~--kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf 359 (1281)
T KOG4222|consen 282 IDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFG--KKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLF 359 (1281)
T ss_pred ccccCCCcccceeeeccccccccccccceEEecCcccc--cccCccccccCceEEeeeecCCCCCcceEEeccCcceecc
Confidence 66777779999999 4456667788899999999985 4444566778999999999999999999999987632 1
Q ss_pred ----CC---c-EEEeCcEEEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738 141 ----GG---E-YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA 176 (187)
Q Consensus 141 ----~~---~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 176 (187)
.. + .....+.|.+.++.+.|.|.|.|...+.+|...
T Consensus 360 ~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~ 403 (1281)
T KOG4222|consen 360 SASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSL 403 (1281)
T ss_pred cCCCCCcCccceecCCCCcccccccccccceEeecccccccccc
Confidence 11 1 112346899999999999999999888888764
No 88
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.47 E-value=3e-13 Score=77.16 Aligned_cols=64 Identities=20% Similarity=0.506 Sum_probs=51.4
Q ss_pred EEEEeEecc-CCCCcEEEEeCCeeCCCCcEE----E----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738 116 VTLECKADG-NPVPNITWTRKNNNLPGGEYS----Y----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASI 180 (187)
Q Consensus 116 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~----~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~ 180 (187)
+.|.|.+.| .|.|.+.|++++..+...... . ....|.|.++..+|.|.|.|.|.|..|.. +..+
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~ 73 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND-TVTA 73 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce-eEEE
Confidence 368999999 899999999999877543211 1 23579999999999999999999999987 3554
No 89
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.47 E-value=6e-13 Score=77.58 Aligned_cols=71 Identities=18% Similarity=0.349 Sum_probs=56.1
Q ss_pred CCcEEEEeEeccC--CCCcEEEEeCCeeCCCCcE----------EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeE
Q psy15738 113 GYSVTLECKADGN--PVPNITWTRKNNNLPGGEY----------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASI 180 (187)
Q Consensus 113 g~~~~l~C~~~g~--p~p~~~W~~~~~~~~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~ 180 (187)
|+.+.|.|.+.|. |.|.+.|.+.+........ ....+.|.|.++..+|+|.|.|.|.|..|.. +.+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~-~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQ-KEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCce-EEEE
Confidence 6889999999999 7889999987764432211 0123689999999999999999999999887 5777
Q ss_pred EEEE
Q psy15738 181 ALHV 184 (187)
Q Consensus 181 ~l~v 184 (187)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 7665
No 90
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.45 E-value=1.6e-12 Score=76.74 Aligned_cols=77 Identities=14% Similarity=0.307 Sum_probs=61.0
Q ss_pred EEEecCCcEEEEeEeccC-----CCCcEEEEeCCeeCCCCcEEE-eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738 108 VEVKKGYSVTLECKADGN-----PVPNITWTRKNNNLPGGEYSY-SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA 181 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g~-----p~p~~~W~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 181 (187)
..+..|....|.|...+. |.|.+.|++++.++....... ..+.|.|.++..+|+|.|+|.+.|..+.. ...++
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~-~~~~t 83 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK-QYNVT 83 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCE-EEEEE
Confidence 456789999999987542 577999999999887554333 66899999999999999999999998876 35555
Q ss_pred EEEE
Q psy15738 182 LHVL 185 (187)
Q Consensus 182 l~v~ 185 (187)
..+.
T Consensus 84 ~t~~ 87 (92)
T cd05757 84 RTIS 87 (92)
T ss_pred EEEE
Confidence 5443
No 91
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.42 E-value=2.9e-12 Score=74.87 Aligned_cols=76 Identities=30% Similarity=0.566 Sum_probs=60.5
Q ss_pred CceEEEecCCcEEEEeEecc-CCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738 105 AGKVEVKKGYSVTLECKADG-NPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL 182 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l 182 (187)
+....+.+|+.++|.|.+.+ .|.+.+.|++++..+... .....+.|.|.++..+|+|.|.|.|.|..|.. +..+.|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~-~~~~~l 84 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR-AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTD-EATATL 84 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc-ccccCCEEEECCCCHHHCEEEEEEEeccCCeE-eEEEEE
Confidence 34457789999999999875 678899999998665332 22245789999999999999999999999988 466554
No 92
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.41 E-value=3.1e-12 Score=74.29 Aligned_cols=67 Identities=18% Similarity=0.381 Sum_probs=55.9
Q ss_pred CceEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC--cEEEeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738 105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG--EYSYSGNSLTVRHTNRHSAGIYLCVANNMV 172 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 172 (187)
|....+..|+++.|.|.+.+ |.+.+.|+++|.++... +.....+.|.|.+++.+|+|.|.|.+.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 34567889999999999864 67899999999988654 344566789999999999999999999864
No 93
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.40 E-value=2.9e-12 Score=74.32 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=60.2
Q ss_pred EEEecCCcEEEEeEecc-CCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 108 VEVKKGYSVTLECKADG-NPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
..+.+|+.++|.|.+.+ .+.+.+.|++++..+... .....|.|.+++.+|+|.|.|.+.+..+...|..+.|+|
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~---~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS---HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc---CCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 36789999999999854 456679999999766432 134689999999999999999999999877678877765
No 94
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.39 E-value=7.8e-12 Score=72.72 Aligned_cols=73 Identities=25% Similarity=0.477 Sum_probs=55.6
Q ss_pred CCcEEEEeEeccCCCCcEEEEeCCeeCCCCc-----E----EEeCcEEEEecCCCCCCeEEEEEEecCCC-CcceeeEEE
Q psy15738 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGE-----Y----SYSGNSLTVRHTNRHSAGIYLCVANNMVG-SSAAASIAL 182 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-----~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g-~~~s~~~~l 182 (187)
|+++.|.|.+.+.|.+.+.|++.+....... . ......|.|.++..+|+|.|.|.|.|..+ ...+.++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 6889999999999999999998765322111 0 01246899999999999999999999876 223678888
Q ss_pred EEE
Q psy15738 183 HVL 185 (187)
Q Consensus 183 ~v~ 185 (187)
+|+
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 774
No 95
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.37 E-value=1.4e-11 Score=71.84 Aligned_cols=76 Identities=29% Similarity=0.528 Sum_probs=60.0
Q ss_pred EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEE--E----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS--Y----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA 181 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~--~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 181 (187)
..+..|+.+.|.|.+.+.|.+.+.|++++..+...... . ....|.|.++..+|.|.|.|.+.|..|.. +.++.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~~~~~ 82 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSI-NHTYK 82 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceE-EEEEE
Confidence 34567999999999999999999999999876533211 1 12468899999999999999999999986 56776
Q ss_pred EEE
Q psy15738 182 LHV 184 (187)
Q Consensus 182 l~v 184 (187)
|.|
T Consensus 83 l~v 85 (85)
T cd05729 83 VDV 85 (85)
T ss_pred EeC
Confidence 653
No 96
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.37 E-value=1.2e-11 Score=73.37 Aligned_cols=76 Identities=17% Similarity=0.320 Sum_probs=56.2
Q ss_pred eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeC---------CCCcEEE-----eCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738 107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNL---------PGGEYSY-----SGNSLTVRHTNRHSAGIYLCVANNMV 172 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~---------~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~ 172 (187)
...+..|+++.|.|.+.+.|.|.+.|++.+..+ ...+... ....|.|.++..+|.|.|.|.+....
T Consensus 6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~~ 85 (95)
T cd05882 6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTMP 85 (95)
T ss_pred cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEeec
Confidence 467889999999999999999999999877532 1122221 13589999999999999999999832
Q ss_pred CCcceeeEEEEE
Q psy15738 173 GSSAAASIALHV 184 (187)
Q Consensus 173 g~~~s~~~~l~v 184 (187)
.. +..++|.|
T Consensus 86 -~~-~~~~~~~v 95 (95)
T cd05882 86 -VR-TAKATVTV 95 (95)
T ss_pred -cc-cEEEEEEC
Confidence 22 34555543
No 97
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.33 E-value=7e-12 Score=71.62 Aligned_cols=65 Identities=14% Similarity=0.419 Sum_probs=49.7
Q ss_pred EEEEeEecc-CCCCcEEEEeCCeeCCCCc-----EEE----eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738 116 VTLECKADG-NPVPNITWTRKNNNLPGGE-----YSY----SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA 181 (187)
Q Consensus 116 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~-----~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 181 (187)
+.|.|.+.+ .|.+.+.|++++..+.... ... ..+.|.|.++...|+|.|.|.+.|..|.. +.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~-~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGND-SVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCce-eEEEe
Confidence 368999875 5778999999998774321 111 23579999999999999999999999977 45543
No 98
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.33 E-value=5.3e-11 Score=76.03 Aligned_cols=108 Identities=15% Similarity=0.174 Sum_probs=71.7
Q ss_pred eEEEEEecccceeEEee--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCC--CcEEEEeCCeeC
Q psy15738 64 YILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPV--PNITWTRKNNNL 139 (187)
Q Consensus 64 ~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~ 139 (187)
.|.+++.+|.|.|+|.. ........+.|.|..+|.+..... ......|+.+.|.|.+.|.++ +.+.|++++...
T Consensus 4 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~--~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 81 (139)
T cd05771 4 TLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLE--KLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD 81 (139)
T ss_pred EECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCC--CceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence 36788889999999944 334466778899999998754332 233347888999999999744 379999998542
Q ss_pred CC-----CcE-----E-------EeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738 140 PG-----GEY-----S-------YSGNSLTVRHTNRHSAGIYLCVANNMVG 173 (187)
Q Consensus 140 ~~-----~~~-----~-------~~~~~l~i~~~~~~d~g~y~C~~~n~~g 173 (187)
.. ... . ...+.|.+......+...|.|.+.+..-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 11 111 0 1123455554444456799999987644
No 99
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.32 E-value=3.5e-11 Score=71.58 Aligned_cols=78 Identities=21% Similarity=0.364 Sum_probs=57.3
Q ss_pred CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe---------eCCCCcEEE-----eCcEEEEecCCCCCCeEEEEEEec
Q psy15738 105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN---------NLPGGEYSY-----SGNSLTVRHTNRHSAGIYLCVANN 170 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~---------~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n 170 (187)
++...+.+|+++.|.|.+.+.|.+.+.|++.+. ....++... ...+|.|.++..+|+|.|.|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 345778999999999999999999999985221 122233321 225799999999999999999998
Q ss_pred CCCCcceeeEEEEE
Q psy15738 171 MVGSSAAASIALHV 184 (187)
Q Consensus 171 ~~g~~~s~~~~l~v 184 (187)
..+. +..+.|+|
T Consensus 84 ~~~~--~~~~~l~v 95 (95)
T cd07701 84 MPVK--TSKAYLTV 95 (95)
T ss_pred ecCc--cEEEEEEC
Confidence 5333 45666654
No 100
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.30 E-value=7.5e-11 Score=69.52 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=57.0
Q ss_pred EEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-----CCCcEEEeCcEEEEecCCCCCCeEEEEEEec-CCCCcceee
Q psy15738 108 VEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-----PGGEYSYSGNSLTVRHTNRHSAGIYLCVANN-MVGSSAAAS 179 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-----~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~s~~ 179 (187)
....+|+++.|.|.. +.|.|.+.|++... .. ...+.....+.|.|.++..+|+|.|.|.+.+ ..+.. ...
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~-~~~ 83 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQT-LAK 83 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEE-EEE
Confidence 457889999999996 57889999998432 11 1223334567799999999999999999985 55544 468
Q ss_pred EEEEEE
Q psy15738 180 IALHVL 185 (187)
Q Consensus 180 ~~l~v~ 185 (187)
++|+|.
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 888875
No 101
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.29 E-value=1.7e-10 Score=68.58 Aligned_cols=77 Identities=29% Similarity=0.434 Sum_probs=59.8
Q ss_pred CceEEEecCCcEEEEeEeccCCCC-cEEEEeCCeeCCCC---cEEE--------eCcEEEEecCCCCC-CeEEEEEEecC
Q psy15738 105 AGKVEVKKGYSVTLECKADGNPVP-NITWTRKNNNLPGG---EYSY--------SGNSLTVRHTNRHS-AGIYLCVANNM 171 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~---~~~~--------~~~~l~i~~~~~~d-~g~y~C~~~n~ 171 (187)
.....+.+|+.+.|.|.+.+.|+| .+.|.+++..+... ++.. ..+.|.|.++...| .|.|.|.|.|.
T Consensus 8 ~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~ 87 (98)
T cd05898 8 EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNS 87 (98)
T ss_pred CceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeC
Confidence 445678899999999999888877 57898887765332 3322 23679999998877 68999999999
Q ss_pred CCCcceeeEEE
Q psy15738 172 VGSSAAASIAL 182 (187)
Q Consensus 172 ~g~~~s~~~~l 182 (187)
.|.. ...++|
T Consensus 88 ~G~d-~~~i~L 97 (98)
T cd05898 88 FGSG-TAIIQL 97 (98)
T ss_pred Cccc-eEEEEe
Confidence 9998 477665
No 102
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.25 E-value=4.9e-11 Score=70.34 Aligned_cols=69 Identities=22% Similarity=0.411 Sum_probs=54.8
Q ss_pred eEEEecCCcEEEEeEe-ccCCCCcEEEEeCCeeC--C-CCcE-EE-eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738 107 KVEVKKGYSVTLECKA-DGNPVPNITWTRKNNNL--P-GGEY-SY-SGNSLTVRHTNRHSAGIYLCVANNMVGSS 175 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~--~-~~~~-~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 175 (187)
...+.+|+.+.|.|.. .|.|.+.+.|++++.+. . ..+. .. ..+.|.+.++...|+|.|.|.|.|.....
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 3567889999999974 78899999999998753 1 1222 22 35899999999999999999999986544
No 103
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.25 E-value=1.5e-10 Score=63.21 Aligned_cols=62 Identities=47% Similarity=0.861 Sum_probs=50.7
Q ss_pred cCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-EEeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738 112 KGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-SYSGNSLTVRHTNRHSAGIYLCVANNMVG 173 (187)
Q Consensus 112 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 173 (187)
+|+.+.|.|.+.+.|.+.+.|++++..+..... ......|.|.++...|.|.|.|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478899999998888899999999887763221 12356899999999999999999998764
No 104
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.24 E-value=1.3e-10 Score=66.84 Aligned_cols=72 Identities=33% Similarity=0.628 Sum_probs=58.0
Q ss_pred EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
..+..|+.+.|.|.+.+.|.+.+.|++++..+.. ....+.+.++...|.|.|.|.+.+..+...+.++.|+|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-----~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS-----SQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEE-----ESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeee-----eeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 3578899999999999988899999998866542 22337778888999999999999977655577777765
No 105
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.21 E-value=1.4e-10 Score=68.39 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=56.7
Q ss_pred EEEecCCcEEEEeEe-cc----CCCCcEEEEeCCeeCCCCcE--EE--eCcEEEEecCCCCCCeEEEEEEecCCCCcc--
Q psy15738 108 VEVKKGYSVTLECKA-DG----NPVPNITWTRKNNNLPGGEY--SY--SGNSLTVRHTNRHSAGIYLCVANNMVGSSA-- 176 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~-~g----~p~p~~~W~~~~~~~~~~~~--~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-- 176 (187)
..+..|.+..|.|.- .+ .+.|.+.|||++.++..... .. ....|.+.++..+|+|.|+|.+.+..|...
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~ 84 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN 84 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEE
Confidence 345678899999972 33 35679999999998764422 22 236899999999999999999999987653
Q ss_pred -eeeEEEEE
Q psy15738 177 -AASIALHV 184 (187)
Q Consensus 177 -s~~~~l~v 184 (187)
++.+.|.|
T Consensus 85 vtr~~~l~v 93 (95)
T cd05897 85 ITRIIKLRI 93 (95)
T ss_pred EEEEEEEEE
Confidence 44445544
No 106
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.18 E-value=6e-10 Score=66.39 Aligned_cols=77 Identities=22% Similarity=0.408 Sum_probs=55.2
Q ss_pred ceEEEecCCcEEEEeEeccCCCCcEEEEeCCe---------eCCCCcEEE-----eCcEEEEecCCCCCCeEEEEEEecC
Q psy15738 106 GKVEVKKGYSVTLECKADGNPVPNITWTRKNN---------NLPGGEYSY-----SGNSLTVRHTNRHSAGIYLCVANNM 171 (187)
Q Consensus 106 ~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~---------~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~ 171 (187)
+...+.+|+++.|.|.+.+.+.+.+.|++.+. .....++.. ....|.|.++..+|+|.|.|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 35678899999999999888888999985221 112223222 1247999999999999999999976
Q ss_pred CCCcceeeEEEEE
Q psy15738 172 VGSSAAASIALHV 184 (187)
Q Consensus 172 ~g~~~s~~~~l~v 184 (187)
... +..+.|+|
T Consensus 85 ~~~--~~~~~~~v 95 (95)
T cd05717 85 PVQ--TAKATVTV 95 (95)
T ss_pred CCc--eEEEEEEC
Confidence 543 35555554
No 107
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.16 E-value=4.8e-10 Score=65.44 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=53.2
Q ss_pred CCcEEEEeEeccCCC--CcEEEEeCCeeCCC----C--cE-----EEeCcEEEEecCCCCCCeEEEEEEecCCCCcceee
Q psy15738 113 GYSVTLECKADGNPV--PNITWTRKNNNLPG----G--EY-----SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAAS 179 (187)
Q Consensus 113 g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~----~--~~-----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~ 179 (187)
|+.+.|.|.+.+.+. ..+.|...+..... . +. ....+.|.|.++...|+|.|.|.|.|..|.. ...
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~-~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIA-KNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEe-ccc
Confidence 688999999987654 46799876653211 1 00 1124689999999999999999999998877 467
Q ss_pred EEEEEE
Q psy15738 180 IALHVL 185 (187)
Q Consensus 180 ~~l~v~ 185 (187)
..|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 777764
No 108
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.13 E-value=3.8e-10 Score=66.48 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=55.2
Q ss_pred ceEEEecCCcEEEEeE-eccCCCCcEEEEeCCeeC-CC-CcEEE-eCcEEEEecCCCCCCe-EEEEEEecCCCCc
Q psy15738 106 GKVEVKKGYSVTLECK-ADGNPVPNITWTRKNNNL-PG-GEYSY-SGNSLTVRHTNRHSAG-IYLCVANNMVGSS 175 (187)
Q Consensus 106 ~~~~~~~g~~~~l~C~-~~g~p~p~~~W~~~~~~~-~~-~~~~~-~~~~l~i~~~~~~d~g-~y~C~~~n~~g~~ 175 (187)
+...+.+|+.+.|.|. ..|.|.|.+.|+.++... .. .+... ..+.|.|.++...|+| .|.|.|.|.....
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 3567899999999997 699999999999876442 22 22222 3589999999999999 8999999986443
No 109
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.12 E-value=3.1e-09 Score=62.86 Aligned_cols=78 Identities=18% Similarity=0.254 Sum_probs=62.4
Q ss_pred eEEEecCCcEEEEeEeccCCCCc-EEEEeCCeeCCCCcE--E-E-------eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738 107 KVEVKKGYSVTLECKADGNPVPN-ITWTRKNNNLPGGEY--S-Y-------SGNSLTVRHTNRHSAGIYLCVANNMVGSS 175 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~~~~--~-~-------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 175 (187)
...+..|+.+.|.|.+++.|+|. +.|.+++..+..... . . -.+.|.|.+++.+|.|.|+|.|.|..+..
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 56789999999999999999997 999998775432211 1 1 12579999999999999999999998877
Q ss_pred ceeeEEEEEE
Q psy15738 176 AAASIALHVL 185 (187)
Q Consensus 176 ~s~~~~l~v~ 185 (187)
+.++.|.|+
T Consensus 92 -s~tF~l~v~ 100 (101)
T cd05860 92 -SVTFNVYVN 100 (101)
T ss_pred -EEEEEEEEe
Confidence 577777664
No 110
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.10 E-value=2.1e-09 Score=61.23 Aligned_cols=61 Identities=21% Similarity=0.376 Sum_probs=47.5
Q ss_pred cEEEEeEe-ccCCCCcEEEEeCCeeCCCCcE-------EEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738 115 SVTLECKA-DGNPVPNITWTRKNNNLPGGEY-------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSS 175 (187)
Q Consensus 115 ~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 175 (187)
.+.|.|.. .|.|++.+.||+++..+..... ....+.|.+......|.+.|.|.|.|.++..
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 36799997 4568899999999998854321 1234578888888888999999999998764
No 111
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.06 E-value=8.6e-10 Score=65.16 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=49.9
Q ss_pred EEecCCcEEEEeEeccCCCCcEEEEeCCeeCCC---------------CcEEE-------eCcEEEEecCCCCCCeEEEE
Q psy15738 109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPG---------------GEYSY-------SGNSLTVRHTNRHSAGIYLC 166 (187)
Q Consensus 109 ~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~---------------~~~~~-------~~~~l~i~~~~~~d~g~y~C 166 (187)
.+..|+++.|.|.+.+.+.+.+.|+++++.... .+... ...+|.|.++..+|+|.|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 467899999999999889999999976632110 00000 11359999999999999999
Q ss_pred EEecCCCCc
Q psy15738 167 VANNMVGSS 175 (187)
Q Consensus 167 ~~~n~~g~~ 175 (187)
.+.|..+..
T Consensus 83 ~v~~~~~~~ 91 (94)
T cd07690 83 EVEDKKEEV 91 (94)
T ss_pred EECCccceE
Confidence 999876643
No 112
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.06 E-value=4.8e-10 Score=63.57 Aligned_cols=66 Identities=8% Similarity=-0.067 Sum_probs=39.8
Q ss_pred CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738 2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
.+.|+|+|+|+++|++|... .+ ++.+...+.....+.|..+..+|.|.|+|.+.
T Consensus 8 ~G~P~P~i~W~k~~~~i~~~--~~------------------------r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~ 61 (75)
T cd05892 8 SAIPPPKIFWKRNNEMVQYN--TD------------------------RISLYQDNSGRVTLLIKNVNKKDAGWYTVSAV 61 (75)
T ss_pred EecCCCeEEEEECCEECcCC--CC------------------------eEEEEEcCCCcEEEEECCCChhhCEEEEEEEE
Confidence 57899999999999876410 00 11111111111123388899999999999444
Q ss_pred --cceeeEEEEEEE
Q psy15738 82 --KKRKKKKKKKEK 93 (187)
Q Consensus 82 --~~~~~~~~~l~v 93 (187)
.+..+.++.|.|
T Consensus 62 N~~G~~~~~a~L~V 75 (75)
T cd05892 62 NEAGVATCHARLDV 75 (75)
T ss_pred cCcCeEEEEEEEeC
Confidence 555555566553
No 113
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.04 E-value=5.9e-10 Score=61.34 Aligned_cols=56 Identities=34% Similarity=0.727 Sum_probs=44.1
Q ss_pred CCcEEEEeEe-ccCCCCcEEEEeCCeeCCCCcEEE---eCc----EEEEecCCCCCCeEEEEEE
Q psy15738 113 GYSVTLECKA-DGNPVPNITWTRKNNNLPGGEYSY---SGN----SLTVRHTNRHSAGIYLCVA 168 (187)
Q Consensus 113 g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~~---~~~----~l~i~~~~~~d~g~y~C~~ 168 (187)
|+++.|.|.+ .+.+.+.+.|++++.......... ... .|.|.+++.+|+|.|.|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999 666778999999998665443221 112 2999999999999999986
No 114
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.01 E-value=2.5e-08 Score=57.58 Aligned_cols=76 Identities=37% Similarity=0.722 Sum_probs=58.5
Q ss_pred EEEecCCcEEEEeEeccCCCCcEEEEeC-CeeCC-CCcEEE-e---CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738 108 VEVKKGYSVTLECKADGNPVPNITWTRK-NNNLP-GGEYSY-S---GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA 181 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~-~~~~~-~~~~~~-~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 181 (187)
..+..|+.+.|.|.+.+.+.+.+.|+++ +..+. ...... . ...|.+.++...|.|.|.|.+.+..+... ..+.
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~-~~~~ 82 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS-STTT 82 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE-EEEE
Confidence 4567899999999999888889999998 66654 222221 2 25799999999999999999998877663 4566
Q ss_pred EEE
Q psy15738 182 LHV 184 (187)
Q Consensus 182 l~v 184 (187)
|.|
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 655
No 115
>smart00409 IG Immunoglobulin.
Probab=99.01 E-value=2.5e-08 Score=57.58 Aligned_cols=76 Identities=37% Similarity=0.722 Sum_probs=58.5
Q ss_pred EEEecCCcEEEEeEeccCCCCcEEEEeC-CeeCC-CCcEEE-e---CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEE
Q psy15738 108 VEVKKGYSVTLECKADGNPVPNITWTRK-NNNLP-GGEYSY-S---GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIA 181 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~-~~~~~-~~~~~~-~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 181 (187)
..+..|+.+.|.|.+.+.+.+.+.|+++ +..+. ...... . ...|.+.++...|.|.|.|.+.+..+... ..+.
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~-~~~~ 82 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS-STTT 82 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE-EEEE
Confidence 4567899999999999888889999998 66654 222221 2 25799999999999999999998877663 4566
Q ss_pred EEE
Q psy15738 182 LHV 184 (187)
Q Consensus 182 l~v 184 (187)
|.|
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 655
No 116
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.99 E-value=8.8e-09 Score=61.19 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=53.7
Q ss_pred EEEecCCcEEEEeEec-----------cCCCCcEEEEeCCeeCCCC--------cEEEeCcEEEEecCCCCCCeEEEEEE
Q psy15738 108 VEVKKGYSVTLECKAD-----------GNPVPNITWTRKNNNLPGG--------EYSYSGNSLTVRHTNRHSAGIYLCVA 168 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~-----------g~p~p~~~W~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~ 168 (187)
..+.+|+.+.|.|... ......+.|+|++...... +.......|.+..+..+|+|.|.|.+
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~ 89 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL 89 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence 4578899999999961 1123479999997544221 22345788999999999999999999
Q ss_pred ecCCCCcceeeEEEE
Q psy15738 169 NNMVGSSAAASIALH 183 (187)
Q Consensus 169 ~n~~g~~~s~~~~l~ 183 (187)
.|...-. ...+.|+
T Consensus 90 rN~t~C~-~~~i~l~ 103 (104)
T cd05896 90 RNSTYCM-KVSMSLT 103 (104)
T ss_pred CCCCcce-EEEEEEE
Confidence 9976543 3454444
No 117
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.99 E-value=1.2e-08 Score=58.99 Aligned_cols=62 Identities=23% Similarity=0.432 Sum_probs=51.1
Q ss_pred eEEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCC-cEEEeCcEEEEecCCCCCCeEEEEEEe
Q psy15738 107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EYSYSGNSLTVRHTNRHSAGIYLCVAN 169 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~ 169 (187)
...+..|.++.|.|...+. .+.+.|++++..+... +.......|.|.++...|+|.|.|.+.
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence 4578899999999998875 5699999999987543 334455668899999999999999987
No 118
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.95 E-value=2.2e-08 Score=57.24 Aligned_cols=72 Identities=21% Similarity=0.362 Sum_probs=52.3
Q ss_pred EEEEeEeccC-CCCcEEEEeCCeeCCCCcEE--------EeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738 116 VTLECKADGN-PVPNITWTRKNNNLPGGEYS--------YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC 186 (187)
Q Consensus 116 ~~l~C~~~g~-p~p~~~W~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~ 186 (187)
+.|.|.+.|. |++.|.|++++..+...... ...+.|.+..-...|...|.|.|.|+.-........|.|+|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 6789998665 78899999999888654221 12356777555555667999999997644446788999988
Q ss_pred C
Q psy15738 187 K 187 (187)
Q Consensus 187 ~ 187 (187)
+
T Consensus 82 ~ 82 (82)
T cd05883 82 K 82 (82)
T ss_pred C
Confidence 5
No 119
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.93 E-value=7.2e-09 Score=71.27 Aligned_cols=77 Identities=21% Similarity=0.343 Sum_probs=57.6
Q ss_pred eEEEecCCcEEEEeEeccCC-----------CCcEEEEeCCeeC----CCCc----------EEEeCcEEEEecCCCCCC
Q psy15738 107 KVEVKKGYSVTLECKADGNP-----------VPNITWTRKNNNL----PGGE----------YSYSGNSLTVRHTNRHSA 161 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g~p-----------~p~~~W~~~~~~~----~~~~----------~~~~~~~l~i~~~~~~d~ 161 (187)
...+.+|+.+.|.|.+.+.| .+.+.|++++... ...+ .......|.|.++...|+
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 45678999999999997754 3489999987541 1010 011246899999999999
Q ss_pred eEEEEEEecCCCCcceeeEEEEE
Q psy15738 162 GIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 162 g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
|.|.|.|.|..+.. ...+.|.|
T Consensus 111 G~Y~C~a~N~~~~~-~~~i~L~V 132 (227)
T PHA02826 111 GIYICTISSGNICE-ESTIRLTF 132 (227)
T ss_pred EEEEEEEEECCcce-EEEEEEEE
Confidence 99999999987765 46777766
No 120
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.92 E-value=1.3e-08 Score=60.06 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=55.1
Q ss_pred EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE--EEeCcEEEEecCCCCCCeEEEEEEecCC-C-CcceeeEEEE
Q psy15738 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY--SYSGNSLTVRHTNRHSAGIYLCVANNMV-G-SSAAASIALH 183 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g-~~~s~~~~l~ 183 (187)
..+..|+.++|.|... .+...+.|+++|........ ......+.|.+++.+|+|.|.|...+.. + +..|..+.|.
T Consensus 11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~ 89 (91)
T cd05751 11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPLELV 89 (91)
T ss_pred CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcEEEE
Confidence 4678999999999875 56678999999875332111 1123568999999999999999999863 2 3336666666
Q ss_pred E
Q psy15738 184 V 184 (187)
Q Consensus 184 v 184 (187)
|
T Consensus 90 V 90 (91)
T cd05751 90 V 90 (91)
T ss_pred e
Confidence 5
No 121
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.92 E-value=2.1e-08 Score=57.95 Aligned_cols=68 Identities=26% Similarity=0.551 Sum_probs=47.1
Q ss_pred EEEEeEecc-CCCCcEEEEeCCeeCCCCcEEE----------eCcEEEEecCCCCCCeEEEEEEecCCCCcc-eeeEEEE
Q psy15738 116 VTLECKADG-NPVPNITWTRKNNNLPGGEYSY----------SGNSLTVRHTNRHSAGIYLCVANNMVGSSA-AASIALH 183 (187)
Q Consensus 116 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~ 183 (187)
+.|.|.+.| .|.+.+.|++++..+....... ..+.|.+......|.|.|.|.|.|...... ..+++|.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~ 81 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD 81 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence 578999987 5888999999998765432211 123566776667788999999999764432 3455543
No 122
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.91 E-value=3.4e-09 Score=60.13 Aligned_cols=66 Identities=9% Similarity=-0.036 Sum_probs=39.5
Q ss_pred CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738 2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
++.|.|+|+|+++|.++... .+ ++.+...+.......|..+..+|.|.|+|.+.
T Consensus 8 ~G~P~P~v~W~k~~~~l~~~--~~------------------------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 61 (75)
T cd05893 8 SGVPHPQIFWKKENESLTHN--TD------------------------RVSMHQDNCGYICLLIQGATKEDAGWYTVSAK 61 (75)
T ss_pred eEecCCEEEEEECCEECCCC--CC------------------------eEEEEEcCCCEEEEEECCCCHHHCEEEEEEEE
Confidence 57899999999999877410 00 11111111001113378899999999999444
Q ss_pred --cceeeEEEEEEE
Q psy15738 82 --KKRKKKKKKKEK 93 (187)
Q Consensus 82 --~~~~~~~~~l~v 93 (187)
.+..+.++.|.|
T Consensus 62 N~~G~~~~~a~L~V 75 (75)
T cd05893 62 NEAGIVSCTARLDV 75 (75)
T ss_pred cCCCEEEEEEEEeC
Confidence 555556666654
No 123
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.91 E-value=3.1e-09 Score=60.64 Aligned_cols=70 Identities=10% Similarity=0.064 Sum_probs=40.3
Q ss_pred CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738 2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
.+.|+|+|+|++||++|... . .+ ... +.. .........+.|..+...|.|.|+|.+.
T Consensus 8 ~G~P~Pti~W~kng~~l~~~---~-~~--------~~~------~~~-----~~~~~~~~~L~i~~~~~~D~G~YtC~A~ 64 (79)
T cd05855 8 KGNPKPTLQWFHEGAILNES---E-YI--------CTK------IHV-----INNTEYHGCLQLDNPTHLNNGIYTLVAK 64 (79)
T ss_pred eEeCCCceEEEECCEECCCC---c-ce--------eee------eEe-----ecccceEEEEEECCCCcccCEEEEEEEE
Confidence 57899999999999988521 0 00 000 000 0000001112277888899999999776
Q ss_pred cceeeEEEEEEEE
Q psy15738 82 KKRKKKKKKKEKR 94 (187)
Q Consensus 82 ~~~~~~~~~l~v~ 94 (187)
....+....+.+.
T Consensus 65 N~~G~~~~~~~~~ 77 (79)
T cd05855 65 NEYGEDEKNVSAH 77 (79)
T ss_pred cCCcccceEEEee
Confidence 6555555555443
No 124
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.87 E-value=7.8e-09 Score=58.70 Aligned_cols=65 Identities=11% Similarity=-0.043 Sum_probs=38.0
Q ss_pred CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738 2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
.+.|.|+|.|+++|+++... .+ ++.+...+.......|..++.+|.|.|+|.+.
T Consensus 8 ~G~P~P~v~W~k~~~~i~~~--~~------------------------r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 61 (75)
T cd05744 8 SAIPPPQIFWKKNNEMLTYN--TD------------------------RISLYQDNCGRICLLIQNANKEDAGWYTVSAV 61 (75)
T ss_pred eecCCCeEEEEECCEECCCC--CC------------------------cEEEEEcCCCeEEEEECCCCcccCEEEEEEEE
Confidence 57899999999999876410 00 01111111111123378899999999999544
Q ss_pred --cceeeEEEEEE
Q psy15738 82 --KKRKKKKKKKE 92 (187)
Q Consensus 82 --~~~~~~~~~l~ 92 (187)
.+..+.++.|.
T Consensus 62 N~~G~~~~~~~l~ 74 (75)
T cd05744 62 NEAGVVSCNARLD 74 (75)
T ss_pred cCCCcEEEEEEEe
Confidence 44444445544
No 125
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.85 E-value=5.7e-09 Score=58.88 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=37.4
Q ss_pred CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738 2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
.+.|+|+|+|+++|+++.. + .++.+..++.+. |..+..+|.|.|+|.+.
T Consensus 11 ~g~P~p~v~W~k~~~~l~~----~-----------------------~r~~~~~~g~L~----I~~v~~~D~G~Y~C~A~ 59 (73)
T cd05852 11 KAAPKPKFSWSKGTELLVN----N-----------------------SRISIWDDGSLE----ILNITKLDEGSYTCFAE 59 (73)
T ss_pred ceeCCCEEEEEeCCEeccc----C-----------------------CCEEEcCCCEEE----ECcCChhHCEEEEEEEE
Confidence 4679999999998875521 0 122222223333 88888999999999554
Q ss_pred --cceeeEEEEEE
Q psy15738 82 --KKRKKKKKKKE 92 (187)
Q Consensus 82 --~~~~~~~~~l~ 92 (187)
.+....++.|+
T Consensus 60 N~~G~~~~~~~l~ 72 (73)
T cd05852 60 NNRGKANSTGVLS 72 (73)
T ss_pred CCCCceeEEEEEE
Confidence 44444555554
No 126
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.81 E-value=3.4e-08 Score=57.19 Aligned_cols=34 Identities=12% Similarity=0.062 Sum_probs=27.7
Q ss_pred eEEEEEecccceeEEee--ccceeeEEEEEEEEcCC
Q psy15738 64 YILAMEKEEEERKKKKK--RKKRKKKKKKKEKRIPP 97 (187)
Q Consensus 64 ~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~~~p 97 (187)
.|.+++.+|.|.|+|.+ .....+.++.|.|..||
T Consensus 50 ~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP 85 (85)
T cd05853 50 MIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP 85 (85)
T ss_pred EEecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence 38999999999999944 45666778899998876
No 127
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.80 E-value=1.4e-08 Score=57.47 Aligned_cols=61 Identities=10% Similarity=0.107 Sum_probs=37.8
Q ss_pred CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738 2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
.+.|.|+++|+++|.++.. + . +..+...+.+. |..+..+|.|.|+|.+.
T Consensus 12 ~g~P~p~i~W~k~g~~~~~----~---------~--------------~~~~~~~~~L~----I~~v~~~D~G~Y~C~A~ 60 (74)
T cd05745 12 QGYPQPVIAWTKGGSQLSV----D---------R--------------RHLVLSSGTLR----ISRVALHDQGQYECQAV 60 (74)
T ss_pred CEecCCEEEEEECCEECCC----C---------C--------------CeEEccCCeEE----EeeCCHHhCEEEEEEEE
Confidence 5789999999999887631 0 0 01111112233 88889999999999554
Q ss_pred --cceeeEEEEEEE
Q psy15738 82 --KKRKKKKKKKEK 93 (187)
Q Consensus 82 --~~~~~~~~~l~v 93 (187)
.+..+.++.|.|
T Consensus 61 N~~G~~~~~~~L~V 74 (74)
T cd05745 61 NIVGSQRTVAQLTV 74 (74)
T ss_pred eCCCceeEEEEEeC
Confidence 444455555543
No 128
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.80 E-value=2.4e-08 Score=56.10 Aligned_cols=60 Identities=10% Similarity=0.038 Sum_probs=36.5
Q ss_pred CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738 2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
.+.|.|+++|+++|.++.. . .++.+...+. ..+..+..+|.|.|+|.+.
T Consensus 9 ~G~P~p~v~W~k~g~~~~~----~-----------------------~~~~~~~~~~----l~i~~v~~~D~G~Y~C~A~ 57 (71)
T cd05723 9 TGKPTPTVKWVKNGDMVIP----S-----------------------DYFKIVKEHN----LQVLGLVKSDEGFYQCIAE 57 (71)
T ss_pred EEeCCCEEEEEECCeECCC----C-----------------------CCEEEEecCC----EEEEcCCcccCEEEEEEEE
Confidence 3679999999999886531 0 0111112122 2367889999999999554
Q ss_pred --cceeeEEEEEE
Q psy15738 82 --KKRKKKKKKKE 92 (187)
Q Consensus 82 --~~~~~~~~~l~ 92 (187)
.+..+.++.|.
T Consensus 58 N~~G~~~~~~~L~ 70 (71)
T cd05723 58 NDVGNVQASAQLI 70 (71)
T ss_pred cCCCEEEEEEEEE
Confidence 44444445544
No 129
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.80 E-value=2.1e-08 Score=57.73 Aligned_cols=73 Identities=12% Similarity=0.073 Sum_probs=41.7
Q ss_pred CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738 2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
-+.|+|+|+|++||++|... + ... .. .. .. ..........+.|..+..+|.|.|+|.+.
T Consensus 8 ~G~P~P~v~W~k~g~~i~~~---~-~~~--------~~------~~-~~--~~~~~~~~~~L~I~~~~~~D~G~YtC~A~ 66 (81)
T cd04971 8 RGNPKPTLTWYHNGAVLNES---D-YIR--------TE------IH-YE--VTTPTEYHGCLQFDNPTHVNNGNYTLVAS 66 (81)
T ss_pred EeeCCCcEEEEECCEECcCC---C-cee--------EE------EE-ee--cccccccEEEEEECCCCcccCeEEEEEEE
Confidence 37899999999999987521 0 000 00 00 00 00000111123377888999999999776
Q ss_pred cceeeEEEEEEEEc
Q psy15738 82 KKRKKKKKKKEKRI 95 (187)
Q Consensus 82 ~~~~~~~~~l~v~~ 95 (187)
....+....+.|.+
T Consensus 67 N~~G~~~~~~~~~~ 80 (81)
T cd04971 67 NEYGQDSKSISAHF 80 (81)
T ss_pred eCCCCeeeEEEeee
Confidence 66556666665543
No 130
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.79 E-value=2e-08 Score=58.50 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=26.7
Q ss_pred EEEEEecccceeEEeec--cceeeEEEEEEEEcCC
Q psy15738 65 ILAMEKEEEERKKKKKR--KKRKKKKKKKEKRIPP 97 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~~~p 97 (187)
|..++..|+|.|+|.+. .+..+..+.|.|..||
T Consensus 51 I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP 85 (85)
T cd04970 51 IRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP 85 (85)
T ss_pred EccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence 88999999999999544 4566778888888776
No 131
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.79 E-value=6.3e-08 Score=57.22 Aligned_cols=72 Identities=24% Similarity=0.349 Sum_probs=51.2
Q ss_pred CCcEEEEeEeccCCCCcEEEEeCCeeCCCC-------------------cEE-EeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738 113 GYSVTLECKADGNPVPNITWTRKNNNLPGG-------------------EYS-YSGNSLTVRHTNRHSAGIYLCVANNMV 172 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-------------------~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~ 172 (187)
|++++|.|.........+.|++........ +.. ..+..|.|.+++.+|+|.|.|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 688999998876556689999876432110 011 134689999999999999999999887
Q ss_pred CCcceeeEEEEE
Q psy15738 173 GSSAAASIALHV 184 (187)
Q Consensus 173 g~~~s~~~~l~v 184 (187)
+......+.|.|
T Consensus 81 ~~~~~~~~~l~v 92 (92)
T cd05741 81 GVTENAKFFLRV 92 (92)
T ss_pred CcEEEEEEEEEC
Confidence 655455655543
No 132
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.77 E-value=1.7e-08 Score=57.10 Aligned_cols=56 Identities=39% Similarity=0.697 Sum_probs=40.6
Q ss_pred CcEEEEeEeccCC-CCcEEEEeCCeeC---CCCcEEEeCcEEEEecCCCCCCeEEEEEEec
Q psy15738 114 YSVTLECKADGNP-VPNITWTRKNNNL---PGGEYSYSGNSLTVRHTNRHSAGIYLCVANN 170 (187)
Q Consensus 114 ~~~~l~C~~~g~p-~p~~~W~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 170 (187)
..+.|.|.+.+.+ .+.+.|+ +.... .........+.|.+.++..+|.|.|.|.|.|
T Consensus 16 ~~~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 16 GSVTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eeEEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3399999999887 7789999 11110 0111122457899999999999999999987
No 133
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.77 E-value=3.1e-08 Score=57.65 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=26.6
Q ss_pred EEEEEecccceeEEe--eccceeeEEEEEEEEcCC
Q psy15738 65 ILAMEKEEEERKKKK--KRKKRKKKKKKKEKRIPP 97 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~--~~~~~~~~~~~l~v~~~p 97 (187)
|..++..|.|.|+|. +..+..+..+.|.|..||
T Consensus 51 I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P 85 (85)
T cd05854 51 IVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP 85 (85)
T ss_pred EccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence 888999999999994 445666778888888765
No 134
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.76 E-value=9.6e-08 Score=57.65 Aligned_cols=77 Identities=19% Similarity=0.287 Sum_probs=52.2
Q ss_pred EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCC--------------------CCcE-EEeCcEEEEecCCCCCCeEEEE
Q psy15738 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLP--------------------GGEY-SYSGNSLTVRHTNRHSAGIYLC 166 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~--------------------~~~~-~~~~~~l~i~~~~~~d~g~y~C 166 (187)
..+.+|+++.|.|.........+.|+|+..... .++. ...+++|.|.+++..|+|.|.|
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~ 87 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTL 87 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEE
Confidence 356789999999865322233799999642110 0111 1235789999999999999999
Q ss_pred EEecCCCCcceeeEEEEE
Q psy15738 167 VANNMVGSSAAASIALHV 184 (187)
Q Consensus 167 ~~~n~~g~~~s~~~~l~v 184 (187)
.+.+.........+.|.|
T Consensus 88 ~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 88 QTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEeCCccEEEEEEEEEC
Confidence 999977544445555543
No 135
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.68 E-value=8.7e-08 Score=57.58 Aligned_cols=30 Identities=7% Similarity=0.019 Sum_probs=22.4
Q ss_pred EEEEEecccceeEEeec--cceeeEEEEEEEE
Q psy15738 65 ILAMEKEEEERKKKKKR--KKRKKKKKKKEKR 94 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~ 94 (187)
|..+..+|.|.|+|.+. .+..+.++.|.|.
T Consensus 69 I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 69 LIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred EeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence 88999999999999554 4455556666664
No 136
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.68 E-value=3.2e-07 Score=55.72 Aligned_cols=73 Identities=26% Similarity=0.473 Sum_probs=51.4
Q ss_pred cCCcEEEEeEeccCC------CCcEEEEeCC---ee---C---CCCc----------EEE-----eCcEEEEecCCCCCC
Q psy15738 112 KGYSVTLECKADGNP------VPNITWTRKN---NN---L---PGGE----------YSY-----SGNSLTVRHTNRHSA 161 (187)
Q Consensus 112 ~g~~~~l~C~~~g~p------~p~~~W~~~~---~~---~---~~~~----------~~~-----~~~~l~i~~~~~~d~ 161 (187)
.|+++.|.|.....+ .+.+.|++.. .. + .... ... ...+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 378999999987653 4579999862 10 0 0000 000 235799999999999
Q ss_pred eEEEEEEecCCCCcceeeEEEEEE
Q psy15738 162 GIYLCVANNMVGSSAAASIALHVL 185 (187)
Q Consensus 162 g~y~C~~~n~~g~~~s~~~~l~v~ 185 (187)
|.|.|.+.+..+.. ...+.|.|-
T Consensus 81 G~Y~C~v~~~~~~~-~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIEDE-QDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCce-EEEEEEEEE
Confidence 99999999986655 578888774
No 137
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.67 E-value=1.1e-07 Score=57.14 Aligned_cols=31 Identities=6% Similarity=-0.053 Sum_probs=23.7
Q ss_pred eEEEEEecccceeEEeec--cceeeEEEEEEEE
Q psy15738 64 YILAMEKEEEERKKKKKR--KKRKKKKKKKEKR 94 (187)
Q Consensus 64 ~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~ 94 (187)
.|..+..+|.|.|+|.+. .+..+.++.|.|.
T Consensus 68 ~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 68 KLVRLKESEAGTYTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred EEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence 388999999999999554 5556667777765
No 138
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.65 E-value=8.9e-08 Score=54.17 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=36.4
Q ss_pred CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738 2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
.+.|.|+++|+++|+++.. .. ... +.... ......|..+..+|.|.|+|.+.
T Consensus 9 ~G~P~p~v~W~k~g~~l~~---~~-~~~-----------------------~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~ 60 (74)
T cd05748 9 SGRPTPTVTWSKDGKPLKL---SG-RVQ-----------------------IETTA-SSTSLVIKNAERSDSGKYTLTLK 60 (74)
T ss_pred eeeCCCeEEEEECCEEcCC---CC-eEE-----------------------EEECC-CeEEEEECCCCcCcCEEEEEEEE
Confidence 4789999999999987631 00 010 00100 11222377888899999999554
Q ss_pred c--ceeeEEEEEE
Q psy15738 82 K--KRKKKKKKKE 92 (187)
Q Consensus 82 ~--~~~~~~~~l~ 92 (187)
. +..+.++.|.
T Consensus 61 N~~G~~~~~~~l~ 73 (74)
T cd05748 61 NPAGEKSATINVK 73 (74)
T ss_pred CCCccEEEEEEEE
Confidence 4 4444444443
No 139
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.64 E-value=1.2e-07 Score=55.31 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=18.7
Q ss_pred eEEEEEecccceeEEeeccceeeEEEEE
Q psy15738 64 YILAMEKEEEERKKKKKRKKRKKKKKKK 91 (187)
Q Consensus 64 ~~~~v~~~d~g~y~c~~~~~~~~~~~~l 91 (187)
.|..+..+|.|.|+|.+.....+....+
T Consensus 55 ~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 55 VIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 3788899999999995554333333333
No 140
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.63 E-value=3.7e-07 Score=55.69 Aligned_cols=68 Identities=21% Similarity=0.421 Sum_probs=50.4
Q ss_pred CceEEEecCCcEEEEeEeccCCCCcEEEEeCCee---------------CCCCcEEE------eCcEEEEecCCCCCCeE
Q psy15738 105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN---------------LPGGEYSY------SGNSLTVRHTNRHSAGI 163 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~---------------~~~~~~~~------~~~~l~i~~~~~~d~g~ 163 (187)
+....+.+|+++.|.|.+.+.+...+.|++.... ...++... ....|.|.+++.+|+|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~ 84 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAV 84 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEE
Confidence 4456788999999999998877778999985421 01122211 13479999999999999
Q ss_pred EEEEEecCC
Q psy15738 164 YLCVANNMV 172 (187)
Q Consensus 164 y~C~~~n~~ 172 (187)
|.|.+.+..
T Consensus 85 Y~C~~~~~~ 93 (109)
T cd04983 85 YFCALSESG 93 (109)
T ss_pred EEEEEecCC
Confidence 999999764
No 141
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.63 E-value=1.1e-07 Score=56.19 Aligned_cols=31 Identities=10% Similarity=-0.005 Sum_probs=21.0
Q ss_pred eeEEEEEecccceeEEeeccceeeEEEEEEE
Q psy15738 63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEK 93 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v 93 (187)
..|..+..+|.|.|+|.+.....+....+.|
T Consensus 60 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05737 60 LTIKGVSSEDSGKYGIVVKNKYGGETVDVTV 90 (92)
T ss_pred EEEccCChhhCEEEEEEEEECCCcceEEEEE
Confidence 3478889999999999665444444444443
No 142
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.63 E-value=8.9e-08 Score=54.48 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=37.4
Q ss_pred CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738 2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
.+.|.|+++|+++|.++..... .. ++.. ..+.+. |..++.+|.|.|+|.+.
T Consensus 11 ~G~P~p~i~W~k~g~~i~~~~~-------------~~-----------~~~~-~~~~L~----I~~~~~~D~G~Y~C~a~ 61 (76)
T cd05867 11 EGIPTPNITWSINGAPIEGTDP-------------DP-----------RRHV-SSGALI----LTDVQPSDTAVYQCEAR 61 (76)
T ss_pred eEeCCCeEEEEECCEECCCCCC-------------Cc-----------eEEe-eCCEEE----ECCCChhhCEEEEEEEE
Confidence 4689999999999997742100 00 0111 112233 77788889999999544
Q ss_pred --cceeeEEEEEEE
Q psy15738 82 --KKRKKKKKKKEK 93 (187)
Q Consensus 82 --~~~~~~~~~l~v 93 (187)
.+.....+.|.|
T Consensus 62 N~~G~~~~~~~l~V 75 (76)
T cd05867 62 NRHGNLLANAHVHV 75 (76)
T ss_pred CCCCeEEEEEEEEE
Confidence 444444555544
No 143
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.63 E-value=1.1e-06 Score=53.64 Aligned_cols=73 Identities=19% Similarity=0.371 Sum_probs=50.4
Q ss_pred cCCcEEEEeEeccCC------------CCcEEEEeCCe--e---C---C-----C----CcEEE-------eCcEEEEec
Q psy15738 112 KGYSVTLECKADGNP------------VPNITWTRKNN--N---L---P-----G----GEYSY-------SGNSLTVRH 155 (187)
Q Consensus 112 ~g~~~~l~C~~~g~p------------~p~~~W~~~~~--~---~---~-----~----~~~~~-------~~~~l~i~~ 155 (187)
.|++++|.|...... .+.+.|++... . + . . ++... ...+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 378899999876432 35799997421 0 0 0 0 11111 246899999
Q ss_pred CCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738 156 TNRHSAGIYLCVANNMVGSSAAASIALHVL 185 (187)
Q Consensus 156 ~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 185 (187)
++.+|+|.|.|.+.+..+.. +..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~-~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDN-YDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCc-eeEEEEEEE
Confidence 99999999999999877766 577777664
No 144
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.62 E-value=1e-06 Score=52.14 Aligned_cols=65 Identities=17% Similarity=0.323 Sum_probs=47.8
Q ss_pred eEEEecCCcEEEEeEeccCCCCcEEEEeCCee---------CCCCcEEE-e----CcEEEEecCCCCCCeEEEEEEecC
Q psy15738 107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNN---------LPGGEYSY-S----GNSLTVRHTNRHSAGIYLCVANNM 171 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~---------~~~~~~~~-~----~~~l~i~~~~~~d~g~y~C~~~n~ 171 (187)
...+.+|+++.|.|.+.+.....+.|++-+.. ....++.. . ..+|.|.++..+|.|.|.|.+...
T Consensus 6 nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 6 DVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred ceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 46788999999999999876666777765532 22223321 1 235999999999999999999863
No 145
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.62 E-value=5.5e-07 Score=54.67 Aligned_cols=73 Identities=22% Similarity=0.407 Sum_probs=51.2
Q ss_pred cCCcEEEEeEeccCC------CCcEEEEeCCee--------CC-----------CCcEEEe-----CcEEEEecCCCCCC
Q psy15738 112 KGYSVTLECKADGNP------VPNITWTRKNNN--------LP-----------GGEYSYS-----GNSLTVRHTNRHSA 161 (187)
Q Consensus 112 ~g~~~~l~C~~~g~p------~p~~~W~~~~~~--------~~-----------~~~~~~~-----~~~l~i~~~~~~d~ 161 (187)
.|++++|.|.....| ...+.|++.... .. .++.... ...|.|.++..+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 378999999876653 346899986410 00 0111111 24799999999999
Q ss_pred eEEEEEEecCCCCcceeeEEEEEE
Q psy15738 162 GIYLCVANNMVGSSAAASIALHVL 185 (187)
Q Consensus 162 g~y~C~~~n~~g~~~s~~~~l~v~ 185 (187)
|.|.|.+.+..+.. ...+.|.|-
T Consensus 81 G~Y~C~v~~~~~~~-~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDE-SVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccce-EEEEEEEEE
Confidence 99999999988876 577777764
No 146
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.62 E-value=5.2e-07 Score=55.20 Aligned_cols=67 Identities=27% Similarity=0.495 Sum_probs=49.0
Q ss_pred CceEEEecCCcEEEEeEeccCCCCcEEEEeCCe--eC-----------------CCCcEEE-----eCcEEEEecCCCCC
Q psy15738 105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NL-----------------PGGEYSY-----SGNSLTVRHTNRHS 160 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~-----------------~~~~~~~-----~~~~l~i~~~~~~d 160 (187)
+....+.+|+.+.|.|.+.+ +.+.+.||+... .+ ...+... ....|.|.++..+|
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~D 83 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPED 83 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhh
Confidence 44567889999999999987 677899998542 10 0111211 12479999999999
Q ss_pred CeEEEEEEecCC
Q psy15738 161 AGIYLCVANNMV 172 (187)
Q Consensus 161 ~g~y~C~~~n~~ 172 (187)
+|.|.|.+.+..
T Consensus 84 sg~Y~Ca~~~~~ 95 (110)
T cd05899 84 SAVYLCASSLGG 95 (110)
T ss_pred CEEEEEEeeCCC
Confidence 999999998753
No 147
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.60 E-value=1e-07 Score=53.14 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=32.1
Q ss_pred CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738 2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
.++|.|.++|+++|.++.. . .++.+...+. ..|..+..+|.|.|+|.+.
T Consensus 8 ~g~P~p~i~W~k~g~~~~~----~-----------------------~~~~~~~~~~----L~I~~~~~~D~G~Y~C~a~ 56 (69)
T cd05746 8 QGDPEPTITWNKDGVQVTE----S-----------------------GKFHISPEGY----LAIRDVGVADQGRYECVAR 56 (69)
T ss_pred eEeCCCEEEEEECCEECCC----C-----------------------CCEEECCCCE----EEECcCChhhCEEEEEEEE
Confidence 4789999999999886631 0 0111111122 2377888889999999555
Q ss_pred cc
Q psy15738 82 KK 83 (187)
Q Consensus 82 ~~ 83 (187)
..
T Consensus 57 N~ 58 (69)
T cd05746 57 NT 58 (69)
T ss_pred CC
Confidence 43
No 148
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.59 E-value=3.5e-07 Score=53.80 Aligned_cols=72 Identities=13% Similarity=0.038 Sum_probs=43.7
Q ss_pred CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738 2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
.++|.|++.|+++|..+... .. .... ...++.+...+.+. |..+..+|.|.|+|.+.
T Consensus 11 ~g~P~p~v~W~k~g~~~~~~---------~~-~~~~---------~~~r~~v~~~~~L~----I~~v~~~D~G~Y~C~a~ 67 (90)
T cd05726 11 TGNPQPAIFWQKEGSQNLLF---------SY-QPPQ---------SSSRFSVSQTGDLT----ITNVQRSDVGYYICQTL 67 (90)
T ss_pred CccCCCEEEEEeCCCcceee---------cc-cCCC---------CCCeEEECCCCeEE----EeeCChhhCEEEEEEEE
Confidence 57899999999987643210 00 0000 01233332223333 88999999999999544
Q ss_pred --cceeeEEEEEEEEcC
Q psy15738 82 --KKRKKKKKKKEKRIP 96 (187)
Q Consensus 82 --~~~~~~~~~l~v~~~ 96 (187)
.+.....+.|.|...
T Consensus 68 N~~G~~~~~~~l~V~~~ 84 (90)
T cd05726 68 NVAGSILTKAYLEVTDV 84 (90)
T ss_pred cCCCceEEEEEEEEeec
Confidence 455667788888743
No 149
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.59 E-value=7.7e-08 Score=54.45 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=37.6
Q ss_pred CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738 2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
.+.|.|+|+|+++|.++... .+ .++....++. ..|..++.+|.|.|+|.+.
T Consensus 8 ~G~P~p~v~W~k~~~~~~~~--~~-----------------------~~~~~~~~g~----L~i~~~~~~D~G~Y~C~a~ 58 (74)
T cd05738 8 SGNPDPEITWFKDFLPVDTT--SN-----------------------GRIKQLRSGA----LQIENSEESDQGKYECVAT 58 (74)
T ss_pred eEecCCEEEEEECCEECccC--CC-----------------------CCEEEcCCcE----EEECCCChhhCEEEEEEEE
Confidence 46899999999998876311 00 1111112122 2366788889999999544
Q ss_pred ---cceeeEEEEEEE
Q psy15738 82 ---KKRKKKKKKKEK 93 (187)
Q Consensus 82 ---~~~~~~~~~l~v 93 (187)
+...+..+.|.|
T Consensus 59 N~~G~~~s~~a~l~v 73 (74)
T cd05738 59 NSAGTRYSAPANLYV 73 (74)
T ss_pred CCCCceEcccEEEEE
Confidence 233455666655
No 150
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.58 E-value=3e-07 Score=53.84 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=26.3
Q ss_pred EEEEEecccceeEE--eeccceeeEEEEEEEEcCCe
Q psy15738 65 ILAMEKEEEERKKK--KKRKKRKKKKKKKEKRIPPR 98 (187)
Q Consensus 65 ~~~v~~~d~g~y~c--~~~~~~~~~~~~l~v~~~p~ 98 (187)
|..+..+|.|.|+| .+..+.....+.|.|..+|.
T Consensus 51 I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~ 86 (88)
T cd05735 51 ILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPD 86 (88)
T ss_pred ECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCC
Confidence 77788999999999 44566667778888876653
No 151
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.58 E-value=1.5e-07 Score=53.59 Aligned_cols=63 Identities=6% Similarity=0.001 Sum_probs=37.6
Q ss_pred CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEee-
Q psy15738 2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKK- 80 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~- 80 (187)
.++|.|+|+|++||+++... .. +.. + ....+ ...+..++..|.|.|+|.+
T Consensus 11 ~G~P~P~i~W~k~g~~i~~~--~~-----------~~~-------~-----~~~~~----~l~i~~v~~~D~G~Y~C~A~ 61 (76)
T cd05868 11 NGNPKPSISWLTNGVPIEIA--PT-----------DPS-------R-----KVDGD----TIIFSKVQERSSAVYQCNAS 61 (76)
T ss_pred eEeCCCeEEEEECCEEcccc--CC-----------Cce-------E-----EecCC----EEEECCCCHhhCEEEEEEEE
Confidence 47899999999999987411 00 000 0 00101 1225677888999999944
Q ss_pred -ccceeeEEEEEEE
Q psy15738 81 -RKKRKKKKKKKEK 93 (187)
Q Consensus 81 -~~~~~~~~~~l~v 93 (187)
..+....++.|.|
T Consensus 62 N~~G~~~~~~~l~v 75 (76)
T cd05868 62 NEYGYLLANAFVNV 75 (76)
T ss_pred cCCCEEEEEEEEEe
Confidence 4555555666655
No 152
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.56 E-value=1.4e-07 Score=52.85 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=15.6
Q ss_pred CCCCCCeeEEEEcCeeee
Q psy15738 2 FADSRPESTFWIFGKPIT 19 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~ 19 (187)
.|.|+|++.|+++|.++.
T Consensus 8 ~g~P~P~v~W~kdg~~l~ 25 (72)
T cd07702 8 KAFPAPEVIWLKDGLPAA 25 (72)
T ss_pred EEcCCCeEEEEECCEECC
Confidence 478999999999998774
No 153
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.56 E-value=2.2e-07 Score=51.79 Aligned_cols=29 Identities=7% Similarity=0.004 Sum_probs=19.1
Q ss_pred eEEEEEecccceeEEeecc--ceeeEEEEEE
Q psy15738 64 YILAMEKEEEERKKKKKRK--KRKKKKKKKE 92 (187)
Q Consensus 64 ~~~~v~~~d~g~y~c~~~~--~~~~~~~~l~ 92 (187)
.|..+..+|.|.|+|.+.. +....++.|.
T Consensus 38 ~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 68 (69)
T cd05725 38 KIRNVTAGDEGSYTCEAENMVGKIEASASLT 68 (69)
T ss_pred EECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence 3778888999999995543 3344444443
No 154
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.56 E-value=1.8e-07 Score=52.51 Aligned_cols=61 Identities=8% Similarity=0.018 Sum_probs=37.3
Q ss_pred CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738 2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
.+.|.|++.|+++|.++... ... . ......+. |..++.+|.|.|+|.+.
T Consensus 8 ~G~P~P~v~W~k~~~~~~~~---------------~~~------~------~~~~~~L~----I~~v~~~D~G~Y~C~a~ 56 (71)
T cd05876 8 EGLPTPEVHWDRIDGPLSPN---------------RTK------K------LNNNKTLQ----LDNVLESDDGEYVCTAE 56 (71)
T ss_pred eEecCCeEEEEECCcCCCCC---------------cee------E------EcCCCEEE----EcccCHHhCEEEEEEEE
Confidence 47899999999998765310 000 0 00112222 77888899999999444
Q ss_pred --cceeeEEEEEEE
Q psy15738 82 --KKRKKKKKKKEK 93 (187)
Q Consensus 82 --~~~~~~~~~l~v 93 (187)
.+..+.++.|.|
T Consensus 57 N~~G~~~~~~~l~V 70 (71)
T cd05876 57 NSEGSARHHYTVTV 70 (71)
T ss_pred cCCCeEEEEEEEEE
Confidence 455555566555
No 155
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.55 E-value=1.4e-06 Score=53.60 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=48.0
Q ss_pred eEEEecCCcEEEEeEeccCC----CCcEEEEe---------------CCeeCC--CC----cEEE------eCcEEEEec
Q psy15738 107 KVEVKKGYSVTLECKADGNP----VPNITWTR---------------KNNNLP--GG----EYSY------SGNSLTVRH 155 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g~p----~p~~~W~~---------------~~~~~~--~~----~~~~------~~~~l~i~~ 155 (187)
...+..|+++.|.|...... ...+.|.+ +|.... .+ +... ...+|.|.+
T Consensus 7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n 86 (116)
T cd05879 7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN 86 (116)
T ss_pred eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence 45678899999999986532 34799933 232221 01 1111 235799999
Q ss_pred CCCCCCeEEEEEEecCCCCc
Q psy15738 156 TNRHSAGIYLCVANNMVGSS 175 (187)
Q Consensus 156 ~~~~d~g~y~C~~~n~~g~~ 175 (187)
++.+|.|.|.|.+.|+.+..
T Consensus 87 v~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 87 LDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred CCcccCEEEEEEEEcCCCcC
Confidence 99999999999999987654
No 156
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.55 E-value=1.9e-07 Score=52.71 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=35.3
Q ss_pred CCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeecc
Q psy15738 3 ADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK 82 (187)
Q Consensus 3 ~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~ 82 (187)
+.|.|+++|+++|+++.. + .++.+...+. ..|..+..+|.|.|+|.+..
T Consensus 12 g~P~p~v~W~k~~~~~~~----~-----------------------~~~~~~~~~~----L~i~~v~~~D~G~Y~C~a~N 60 (73)
T cd04969 12 AAPKPTISWSKGTELLTN----S-----------------------SRICIWPDGS----LEILNVTKSDEGKYTCFAEN 60 (73)
T ss_pred EcCCCEEEEEECCEEccc----C-----------------------CCEEECCCCe----EEEccCChhHCEEEEEEEEC
Confidence 578899999999886531 0 0111112122 33788899999999995544
Q ss_pred --ceeeEEEEEE
Q psy15738 83 --KRKKKKKKKE 92 (187)
Q Consensus 83 --~~~~~~~~l~ 92 (187)
+....++.|.
T Consensus 61 ~~G~~~~~~~l~ 72 (73)
T cd04969 61 FFGKANSTGSLS 72 (73)
T ss_pred CCCceEEEEEEE
Confidence 3334444443
No 157
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.53 E-value=1.2e-07 Score=52.37 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.7
Q ss_pred CCCCCCeeEEEEcCeeee
Q psy15738 2 FADSRPESTFWIFGKPIT 19 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~ 19 (187)
.+.|.|.++|++||++|.
T Consensus 8 ~g~P~P~v~W~kdg~~l~ 25 (67)
T cd05863 8 AAYPPPEFQWYKDGKLIS 25 (67)
T ss_pred EEeCCCEEEEEECCEECc
Confidence 478999999999999874
No 158
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.53 E-value=2.5e-06 Score=52.58 Aligned_cols=79 Identities=23% Similarity=0.461 Sum_probs=51.2
Q ss_pred CceEEEecCCcEEEEeEeccCC----CCcEEEEeC---Cee---C----------CCCcE----EE------eCcEEEEe
Q psy15738 105 AGKVEVKKGYSVTLECKADGNP----VPNITWTRK---NNN---L----------PGGEY----SY------SGNSLTVR 154 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p----~p~~~W~~~---~~~---~----------~~~~~----~~------~~~~l~i~ 154 (187)
+..+.+.+|+++.|.|.....+ ...+.|++. +.. + ..+++ .. ....|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 3456788999999999975433 235899752 111 0 01011 11 13469999
Q ss_pred cCCCCCCeEEEEEEecCCCCcc-eeeEEEE
Q psy15738 155 HTNRHSAGIYLCVANNMVGSSA-AASIALH 183 (187)
Q Consensus 155 ~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~ 183 (187)
+++.+|+|.|.|.+.|..+... ...+.|.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred eCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 9999999999999998766421 3455554
No 159
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.52 E-value=2.1e-07 Score=54.77 Aligned_cols=30 Identities=3% Similarity=-0.068 Sum_probs=22.1
Q ss_pred eEEEEEecccceeEEee--ccceeeEEEEEEE
Q psy15738 64 YILAMEKEEEERKKKKK--RKKRKKKKKKKEK 93 (187)
Q Consensus 64 ~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v 93 (187)
.|..++.+|.|.|+|.+ ..+....++.|+|
T Consensus 58 ~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V 89 (90)
T cd04974 58 YLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89 (90)
T ss_pred EEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence 37778889999999944 4555566677766
No 160
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.51 E-value=1.4e-06 Score=52.11 Aligned_cols=71 Identities=25% Similarity=0.495 Sum_probs=48.0
Q ss_pred CcEEEEeEeccCC---CCcEEEEeCCee---------------CCC---CcEEE-----eCcEEEEecCCCCCCeEEEEE
Q psy15738 114 YSVTLECKADGNP---VPNITWTRKNNN---------------LPG---GEYSY-----SGNSLTVRHTNRHSAGIYLCV 167 (187)
Q Consensus 114 ~~~~l~C~~~g~p---~p~~~W~~~~~~---------------~~~---~~~~~-----~~~~l~i~~~~~~d~g~y~C~ 167 (187)
+++.|.|.....+ ...+.|++.... ... .+... ....|.|.++..+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4678999876654 336889985421 000 11111 235899999999999999999
Q ss_pred Eec-CCCCcceeeEEEEEE
Q psy15738 168 ANN-MVGSSAAASIALHVL 185 (187)
Q Consensus 168 ~~n-~~g~~~s~~~~l~v~ 185 (187)
+.. +.|.. ...+.|.|+
T Consensus 81 v~~~~~g~~-~~~~~l~V~ 98 (98)
T cd05718 81 FATFPQGNR-QKVTTLTVL 98 (98)
T ss_pred EEeCCCCcE-EEEEEEEeC
Confidence 875 55666 577777774
No 161
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.49 E-value=4.3e-06 Score=51.65 Aligned_cols=79 Identities=19% Similarity=0.396 Sum_probs=50.7
Q ss_pred CceEEEecCCcEEEEeEeccCC----CCcEEEEeCCe------eC-----------CCCcE----EE------eCcEEEE
Q psy15738 105 AGKVEVKKGYSVTLECKADGNP----VPNITWTRKNN------NL-----------PGGEY----SY------SGNSLTV 153 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p----~p~~~W~~~~~------~~-----------~~~~~----~~------~~~~l~i 153 (187)
+..+.+..|+.+.|.|...... ...+.|++... .+ ...++ .. ....|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 3346778999999999875432 24589986321 00 01111 01 1246999
Q ss_pred ecCCCCCCeEEEEEEecCCCCcc-eeeEEEE
Q psy15738 154 RHTNRHSAGIYLCVANNMVGSSA-AASIALH 183 (187)
Q Consensus 154 ~~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~ 183 (187)
.++..+|.|.|.|.+.|.-+... +..+.|.
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 115 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR 115 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence 99999999999999998765432 3445554
No 162
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.48 E-value=2.2e-06 Score=50.78 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=51.0
Q ss_pred EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcE-----EEeCcEEEEecCCCCCCeEEEEEEecC----CCCccee
Q psy15738 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-----SYSGNSLTVRHTNRHSAGIYLCVANNM----VGSSAAA 178 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~n~----~g~~~s~ 178 (187)
..+..|+.++|.|.... +...+.|+|++........ ......+.|..++..|+|.|.|..... .-+..|.
T Consensus 10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~~~~~~~wS~~Sd 88 (94)
T cd05711 10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSYNHSLYEWSAPSD 88 (94)
T ss_pred CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEECCCCCccccCCCC
Confidence 46789999999998754 4457999999865322110 012346799999999999999997522 1223356
Q ss_pred eEEEEE
Q psy15738 179 SIALHV 184 (187)
Q Consensus 179 ~~~l~v 184 (187)
.+.|.|
T Consensus 89 pl~l~V 94 (94)
T cd05711 89 PLKIVV 94 (94)
T ss_pred CeEEeC
Confidence 666543
No 163
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.48 E-value=3.9e-07 Score=51.76 Aligned_cols=63 Identities=10% Similarity=0.029 Sum_probs=37.4
Q ss_pred CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738 2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
.+.|.|+|.|+++|+++.... . +.. . ....+.+ .|..++.+|.|.|+|.+.
T Consensus 11 ~g~P~p~i~W~~~g~~~~~~~--~-----------~~~------~------~~~~~~L----~i~~v~~~D~G~Y~C~A~ 61 (76)
T cd04978 11 EGIPQPTITWRLNGVPIEELP--P-----------DPR------R------RVDGGTL----ILSNVQPNDTAVYQCNAS 61 (76)
T ss_pred eeeCCCEEEEEECCEECCCCC--C-----------cce------E------EccCCEE----EECCCChhhCEEEEEEEE
Confidence 578999999999998764210 0 000 0 0011122 267788889999999554
Q ss_pred --cceeeEEEEEEE
Q psy15738 82 --KKRKKKKKKKEK 93 (187)
Q Consensus 82 --~~~~~~~~~l~v 93 (187)
.+.....+.|.|
T Consensus 62 N~~G~~~~~~~l~V 75 (76)
T cd04978 62 NVHGYLLANAFVHV 75 (76)
T ss_pred ccCCeEEEeEEEEE
Confidence 444445555554
No 164
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.47 E-value=8.1e-07 Score=50.34 Aligned_cols=30 Identities=7% Similarity=0.042 Sum_probs=21.6
Q ss_pred eEEEEEecccceeEEeec--cceeeEEEEEEE
Q psy15738 64 YILAMEKEEEERKKKKKR--KKRKKKKKKKEK 93 (187)
Q Consensus 64 ~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v 93 (187)
.|..+..+|.|.|+|.+. .+..+..+.|.|
T Consensus 43 ~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 43 FIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred EEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 378889999999999554 444555666655
No 165
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.47 E-value=3.4e-06 Score=48.68 Aligned_cols=59 Identities=20% Similarity=0.434 Sum_probs=40.2
Q ss_pred EEEEeEeccC-CCCcEEEEeCCeeCCCCcEE---------EeCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738 116 VTLECKADGN-PVPNITWTRKNNNLPGGEYS---------YSGNSLTVRHTNRHSAGIYLCVANNMVGS 174 (187)
Q Consensus 116 ~~l~C~~~g~-p~p~~~W~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 174 (187)
+.|.|.+.+. |.+.+.|++++..+...... ...+.|.+......+.+.|.|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 5789999765 88899999999877533211 11233444444445567999999998654
No 166
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.47 E-value=7.7e-07 Score=52.97 Aligned_cols=32 Identities=6% Similarity=-0.087 Sum_probs=23.4
Q ss_pred ceeEEEEEecccceeEEeec---cceeeEEEEEEE
Q psy15738 62 LSYILAMEKEEEERKKKKKR---KKRKKKKKKKEK 93 (187)
Q Consensus 62 ~~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v 93 (187)
.+.|..++.+|.|.|+|.+. ++....++.|.|
T Consensus 61 ~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 61 TLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred EEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 34488999999999999554 355566666665
No 167
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.46 E-value=1.1e-06 Score=52.49 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=51.7
Q ss_pred cCCcEEEEeEecc-CCCCcEEEEeCCeeC----C----CC----------cEEE--eCcEEEEecCCCCCCeEEEEEEec
Q psy15738 112 KGYSVTLECKADG-NPVPNITWTRKNNNL----P----GG----------EYSY--SGNSLTVRHTNRHSAGIYLCVANN 170 (187)
Q Consensus 112 ~g~~~~l~C~~~g-~p~p~~~W~~~~~~~----~----~~----------~~~~--~~~~l~i~~~~~~d~g~y~C~~~n 170 (187)
.|++++|.|.... .....+.|++....+ . .. +... .+.+|.|.+++.+|+|.|.|.+.+
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 5889999998754 334568899864321 0 00 0111 236799999999999999999999
Q ss_pred CCCCcceeeEEEEE
Q psy15738 171 MVGSSAAASIALHV 184 (187)
Q Consensus 171 ~~g~~~s~~~~l~v 184 (187)
..|......+.|.|
T Consensus 83 ~~~~~~~~~f~L~v 96 (97)
T cd05775 83 KNGVTITKEFTLHI 96 (97)
T ss_pred CCCCeEEEEEEEEe
Confidence 88777667777776
No 168
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.46 E-value=1.1e-06 Score=51.08 Aligned_cols=29 Identities=0% Similarity=-0.122 Sum_probs=19.8
Q ss_pred EEEEEecccceeEEeec--cceeeEEEEEEE
Q psy15738 65 ILAMEKEEEERKKKKKR--KKRKKKKKKKEK 93 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v 93 (187)
|..+..+|.|.|+|.+. .+....++.|+|
T Consensus 55 i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 85 (85)
T cd05857 55 MESVVPSDKGNYTCVVENEYGSINHTYHLDV 85 (85)
T ss_pred EccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence 66788899999999554 444555555543
No 169
>PHA03376 BARF1; Provisional
Probab=98.44 E-value=8.2e-06 Score=53.43 Aligned_cols=89 Identities=12% Similarity=0.169 Sum_probs=50.6
Q ss_pred eeccEEEeeccccccceeEEEEEecccceeEEe-eccceeeEEE-EEEEEcCCeeEEecCCceEEEecCCcEEEEeEecc
Q psy15738 47 TSCSYIILATSLLHYLSYILAMEKEEEERKKKK-KRKKRKKKKK-KKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADG 124 (187)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~-~~~~~~~~~~-~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g 124 (187)
|.++..+.... .....-|.+++.+|.|.|+|. +.+.+..... .|++- .|........+ -..+..+...+.|...|
T Consensus 74 yRGrtD~~~~~-gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V-~~~~Lsv~a~~-~dFp~~~~~~i~C~sgg 150 (221)
T PHA03376 74 FRGFFDIHRSA-NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV-KPLTLSVHSER-SQFPDFSVLTVTCTVNA 150 (221)
T ss_pred cccEEEEEecC-CeEEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeee-ecceEEEEecc-ccCCCCCeeEEEEecCC
Confidence 34444443333 233444899999999999993 3333333222 33332 22211111100 11233566789999999
Q ss_pred CCCCcEEEEeCCee
Q psy15738 125 NPVPNITWTRKNNN 138 (187)
Q Consensus 125 ~p~p~~~W~~~~~~ 138 (187)
.|.|+++|.-+...
T Consensus 151 fP~P~~~Wle~~~~ 164 (221)
T PHA03376 151 FPHPHVQWLMPEGV 164 (221)
T ss_pred cCCchheeccccCC
Confidence 99999999987654
No 170
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.44 E-value=3.8e-06 Score=50.38 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=29.7
Q ss_pred cEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 149 NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 149 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
.+|.|.++..+|+|.|.|.+.+..+.. ...+.|.|
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~i~l~v 99 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGFYE-EATVELKV 99 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCcEE-EEEEEEEE
Confidence 479999999999999999999877664 57777766
No 171
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.43 E-value=4e-06 Score=51.22 Aligned_cols=72 Identities=26% Similarity=0.490 Sum_probs=49.9
Q ss_pred CCcEEEEeEeccCC----------CCcEEEEeCC--eeC-----------CC----CcEEE-------eCcEEEEecCCC
Q psy15738 113 GYSVTLECKADGNP----------VPNITWTRKN--NNL-----------PG----GEYSY-------SGNSLTVRHTNR 158 (187)
Q Consensus 113 g~~~~l~C~~~g~p----------~p~~~W~~~~--~~~-----------~~----~~~~~-------~~~~l~i~~~~~ 158 (187)
|++++|.|.....+ ...+.|++.. ... .. ++... ....|.|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 78899999986543 2458899852 110 00 11111 225699999999
Q ss_pred CCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738 159 HSAGIYLCVANNMVGSSAAASIALHVL 185 (187)
Q Consensus 159 ~d~g~y~C~~~n~~g~~~s~~~~l~v~ 185 (187)
+|.|.|.|.+....... ...+.|.|.
T Consensus 82 sD~G~Y~C~v~~~~~~~-~~~v~l~V~ 107 (110)
T cd05878 82 SDSGVYRCEVMHGIEDE-QDTVPLEVT 107 (110)
T ss_pred hhCEEEEEEEEeCCCcc-eEEEEEEEE
Confidence 99999999999876655 578888775
No 172
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.43 E-value=4.4e-07 Score=50.64 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=15.8
Q ss_pred CCCCCCeeEEEEcCeeee
Q psy15738 2 FADSRPESTFWIFGKPIT 19 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~ 19 (187)
.+.|.|.++|++||++|.
T Consensus 8 ~G~P~P~v~W~k~g~~l~ 25 (70)
T cd05864 8 YGYPPPEVKWYKNGQLIV 25 (70)
T ss_pred EEeCCCEEEEEECCEECC
Confidence 478999999999999875
No 173
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.41 E-value=1.5e-06 Score=52.62 Aligned_cols=65 Identities=29% Similarity=0.476 Sum_probs=46.8
Q ss_pred EEecCCcEEEEeEeccC-CCCcEEEEeCCee--C----------------CCCcEEE------eCcEEEEecCCCCCCeE
Q psy15738 109 EVKKGYSVTLECKADGN-PVPNITWTRKNNN--L----------------PGGEYSY------SGNSLTVRHTNRHSAGI 163 (187)
Q Consensus 109 ~~~~g~~~~l~C~~~g~-p~p~~~W~~~~~~--~----------------~~~~~~~------~~~~l~i~~~~~~d~g~ 163 (187)
.+.+|+.+.|.|...+. +...+.|++.... . ...+... ....|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 45789999999999876 5667999985431 0 0011111 12379999999999999
Q ss_pred EEEEEecCCC
Q psy15738 164 YLCVANNMVG 173 (187)
Q Consensus 164 y~C~~~n~~g 173 (187)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999998664
No 174
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.40 E-value=4.3e-06 Score=50.75 Aligned_cols=67 Identities=21% Similarity=0.407 Sum_probs=46.9
Q ss_pred CceEEEecCCcEEEEeEeccCC-CCcEEEEeCCe--eC----------C---CCcEEE----eCcEEEEecCCCCCCeEE
Q psy15738 105 AGKVEVKKGYSVTLECKADGNP-VPNITWTRKNN--NL----------P---GGEYSY----SGNSLTVRHTNRHSAGIY 164 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p-~p~~~W~~~~~--~~----------~---~~~~~~----~~~~l~i~~~~~~d~g~y 164 (187)
+....+.+|+++.|.|.+.+.. ...+.|++... .. . ..+... ....|.|.++..+|+|.|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y 86 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVY 86 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEE
Confidence 4456788999999999987665 56799997531 10 0 011111 113689999999999999
Q ss_pred EEEEecC
Q psy15738 165 LCVANNM 171 (187)
Q Consensus 165 ~C~~~n~ 171 (187)
.|.+.+.
T Consensus 87 ~Ca~~~~ 93 (106)
T cd04980 87 YCQQYGT 93 (106)
T ss_pred EEEEeCC
Confidence 9998754
No 175
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.39 E-value=1.3e-06 Score=51.98 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=22.7
Q ss_pred eEEEEEecccceeEEee--ccceeeEEEEEEEE
Q psy15738 64 YILAMEKEEEERKKKKK--RKKRKKKKKKKEKR 94 (187)
Q Consensus 64 ~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~ 94 (187)
.|..++.+|.|.|+|.+ ..+.....+.|.|.
T Consensus 61 ~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 61 TILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred EECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence 37788889999999944 45556666777665
No 176
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.38 E-value=4.6e-06 Score=49.84 Aligned_cols=36 Identities=8% Similarity=-0.044 Sum_probs=28.6
Q ss_pred eeEEEEEecccceeEE--eeccceeeEEEEEEEEcCCe
Q psy15738 63 SYILAMEKEEEERKKK--KKRKKRKKKKKKKEKRIPPR 98 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c--~~~~~~~~~~~~l~v~~~p~ 98 (187)
+.|..+..+|.|.|+| .+..+....++.|.|..+|.
T Consensus 58 L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~ 95 (98)
T cd05762 58 LTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPD 95 (98)
T ss_pred EEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCC
Confidence 3488899999999999 55667777788888887663
No 177
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.38 E-value=5.8e-06 Score=49.33 Aligned_cols=72 Identities=26% Similarity=0.435 Sum_probs=48.0
Q ss_pred CCcEEEEeEeccCCC-CcEEEEeCCeeC--------C-CC---------cEEE-----eCcEEEEecCCCCCCeEEEEEE
Q psy15738 113 GYSVTLECKADGNPV-PNITWTRKNNNL--------P-GG---------EYSY-----SGNSLTVRHTNRHSAGIYLCVA 168 (187)
Q Consensus 113 g~~~~l~C~~~g~p~-p~~~W~~~~~~~--------~-~~---------~~~~-----~~~~l~i~~~~~~d~g~y~C~~ 168 (187)
|++++|.|....... -.+.|++..... . .+ +... ...+|.|.++..+|.|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 678999998654332 258898743210 0 00 0011 2357999999999999999998
Q ss_pred ec-CCCCcceeeEEEEEE
Q psy15738 169 NN-MVGSSAAASIALHVL 185 (187)
Q Consensus 169 ~n-~~g~~~s~~~~l~v~ 185 (187)
.. +.|.. +..+.|+|.
T Consensus 81 ~~~p~g~~-~~~~~L~v~ 97 (97)
T cd05846 81 NTFPDGSK-SGTMCLTVY 97 (97)
T ss_pred EeCCCCCe-eeEEEEEEC
Confidence 85 45665 688888773
No 178
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.38 E-value=9.7e-06 Score=46.86 Aligned_cols=60 Identities=22% Similarity=0.441 Sum_probs=41.2
Q ss_pred EEEEeEeccC-CCCcEEEEeCCeeCCCCcEEE----------eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738 116 VTLECKADGN-PVPNITWTRKNNNLPGGEYSY----------SGNSLTVRHTNRHSAGIYLCVANNMVGSS 175 (187)
Q Consensus 116 ~~l~C~~~g~-p~p~~~W~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 175 (187)
+.|.|.+.|. |.+.|+|+++|..+....... ..+.|.+......+...|.|.+.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 5789999876 888999999998775432111 11334444444556789999999986543
No 179
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.35 E-value=1.7e-06 Score=50.29 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=19.3
Q ss_pred eEEEEEecccceeEEeecc---ceeeEEEEEE
Q psy15738 64 YILAMEKEEEERKKKKKRK---KRKKKKKKKE 92 (187)
Q Consensus 64 ~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~ 92 (187)
.|..+..+|.|.|+|.+.. ...+..+.|.
T Consensus 54 ~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 85 (86)
T cd05724 54 LIAEARKSDEGTYKCVATNMVGERESAAARLS 85 (86)
T ss_pred EEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence 3888999999999995543 2234444443
No 180
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.34 E-value=1.1e-06 Score=49.21 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=15.3
Q ss_pred CCCCCCeeEEEEcCeeee
Q psy15738 2 FADSRPESTFWIFGKPIT 19 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~ 19 (187)
-+.|.|++.|+++|+++.
T Consensus 8 ~g~P~p~v~W~k~g~~l~ 25 (71)
T cd04976 8 KAYPPPEIQWYKNGKLIS 25 (71)
T ss_pred EEeCCCEEEEEECCEECC
Confidence 368999999999998774
No 181
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.34 E-value=1.3e-05 Score=47.86 Aligned_cols=36 Identities=17% Similarity=0.467 Sum_probs=31.4
Q ss_pred cEEEEecCCCCCCeEEEEEEec-CCCCcceeeEEEEEE
Q psy15738 149 NSLTVRHTNRHSAGIYLCVANN-MVGSSAAASIALHVL 185 (187)
Q Consensus 149 ~~l~i~~~~~~d~g~y~C~~~n-~~g~~~s~~~~l~v~ 185 (187)
.+|.|.+++.+|.|.|.|.+.+ +.|+. +..+.|.|.
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~-~~~~~L~V~ 99 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNR-ESQLNLTVY 99 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCe-EEEEEEEEC
Confidence 6899999999999999999999 56765 688888873
No 182
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.33 E-value=1.6e-06 Score=51.19 Aligned_cols=31 Identities=10% Similarity=0.032 Sum_probs=22.4
Q ss_pred eeEEEEEecccceeEEeeccceeeEEEEEEE
Q psy15738 63 SYILAMEKEEEERKKKKKRKKRKKKKKKKEK 93 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v 93 (187)
..|..++.+|.|.|+|.+........+.+.|
T Consensus 60 L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05891 60 LTIKGVTSEDSGKYSINVKNKYGGETVDVTV 90 (92)
T ss_pred EEECCCChhhCEEEEEEEEeCCCceeeEEEE
Confidence 3477888899999999776555555555554
No 183
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.33 E-value=2e-06 Score=48.84 Aligned_cols=65 Identities=12% Similarity=-0.041 Sum_probs=39.0
Q ss_pred CCCCCCeeEEEEcCeeeeeeeecCcceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEee-
Q psy15738 2 FADSRPESTFWIFGKPITRIMFADLAIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKK- 80 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~- 80 (187)
.+.|.|.+.|+++|+.+.. + .. .++.....+ ....|..+..+|.|.|+|.+
T Consensus 8 ~g~P~p~v~W~k~~~~l~~----~--------~~-------------~~~~~~~~~---~~l~I~~~~~~D~G~Y~C~a~ 59 (76)
T cd05736 8 EGIPLPRLTWLKNGMDITP----K--------LS-------------KQLTLIANG---SELHISNVRYEDTGAYTCIAK 59 (76)
T ss_pred eecCCCEEEEEECCEECCC----C--------CC-------------ccEEEeCCC---CEEEECcCCcccCEEEEEEEE
Confidence 3679999999999886631 0 00 011111111 12236778889999999944
Q ss_pred -ccceeeEEEEEEEE
Q psy15738 81 -RKKRKKKKKKKEKR 94 (187)
Q Consensus 81 -~~~~~~~~~~l~v~ 94 (187)
..+....++.|.|.
T Consensus 60 N~~G~~~~~~~l~V~ 74 (76)
T cd05736 60 NEAGVDEDISSLFVE 74 (76)
T ss_pred cCCCCcceEEEEEEE
Confidence 45555666677664
No 184
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.32 E-value=1.2e-06 Score=49.00 Aligned_cols=29 Identities=7% Similarity=0.034 Sum_probs=19.5
Q ss_pred EEEEEecccceeEEeec--cceeeEEEEEEE
Q psy15738 65 ILAMEKEEEERKKKKKR--KKRKKKKKKKEK 93 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v 93 (187)
|..+..+|.|.|+|.+. .+..+.++.|.|
T Consensus 40 i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 40 IDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred ECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 77888899999999554 344444455544
No 185
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.31 E-value=2.9e-06 Score=48.34 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=15.3
Q ss_pred CCCCCCeeEEEEcCeeee
Q psy15738 2 FADSRPESTFWIFGKPIT 19 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~ 19 (187)
.+.|.|++.|+++|.++.
T Consensus 8 ~g~P~p~v~W~k~g~~l~ 25 (77)
T cd05760 8 DGHPRPTYQWFRDGTPLS 25 (77)
T ss_pred eecCCCcEEEEECCEECC
Confidence 468999999999998763
No 186
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.30 E-value=1.5e-05 Score=48.82 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=32.1
Q ss_pred CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738 148 GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185 (187)
Q Consensus 148 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 185 (187)
..+|.|.+++.+|+|.|.|.+.+..... ...+.|.|.
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~-~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDT-QDTVSLDVS 114 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCccc-EEEEEEEEE
Confidence 3579999999999999999999988877 588888775
No 187
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.30 E-value=7.6e-06 Score=49.91 Aligned_cols=33 Identities=6% Similarity=-0.053 Sum_probs=24.1
Q ss_pred EEEEE-ecccceeEE--eeccceeeEEEEEEEEcCC
Q psy15738 65 ILAME-KEEEERKKK--KKRKKRKKKKKKKEKRIPP 97 (187)
Q Consensus 65 ~~~v~-~~d~g~y~c--~~~~~~~~~~~~l~v~~~p 97 (187)
|..+. .+|.|.|+| .+..+.....+.|.|..+|
T Consensus 73 I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 73 IINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred ECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 55665 579999999 4445556778888887665
No 188
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.28 E-value=1.8e-05 Score=47.48 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=30.4
Q ss_pred CcEEEEecCCCCCCeEEEEEEec-CCCCcceeeEEEEE
Q psy15738 148 GNSLTVRHTNRHSAGIYLCVANN-MVGSSAAASIALHV 184 (187)
Q Consensus 148 ~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~s~~~~l~v 184 (187)
..+|.|.+++.+|.|.|.|.+.+ +.|.. ...+.|.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~-~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNF-EAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCe-eeEEEEEe
Confidence 35799999999999999999998 56665 67888877
No 189
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.28 E-value=4.3e-06 Score=47.17 Aligned_cols=28 Identities=7% Similarity=-0.043 Sum_probs=18.8
Q ss_pred EEEEEecccceeEEeecc--ceeeEEEEEE
Q psy15738 65 ILAMEKEEEERKKKKKRK--KRKKKKKKKE 92 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~~--~~~~~~~~l~ 92 (187)
|..+..+|.|.|+|.+.. +..+.++.|+
T Consensus 44 i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 44 ILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred EEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 677888999999995554 3344444443
No 190
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.28 E-value=3.1e-06 Score=47.83 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=15.2
Q ss_pred CC-CCCCeeEEEEcCeeee
Q psy15738 2 FA-DSRPESTFWIFGKPIT 19 (187)
Q Consensus 2 ~~-~p~p~i~w~~~g~~l~ 19 (187)
.+ .|.|++.|+++|+++.
T Consensus 8 ~g~~P~p~~~W~k~g~~l~ 26 (75)
T cd05750 8 TSEYPSLRFKWFKDGKELN 26 (75)
T ss_pred cCCCCCceEEEEcCCeecc
Confidence 35 7999999999998774
No 191
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.28 E-value=8.9e-06 Score=50.19 Aligned_cols=66 Identities=23% Similarity=0.457 Sum_probs=47.4
Q ss_pred CceEEEecCCcEEEEeEecc--CCCCcEEEEeCCe--eC------------------CCCcEEE------eCcEEEEecC
Q psy15738 105 AGKVEVKKGYSVTLECKADG--NPVPNITWTRKNN--NL------------------PGGEYSY------SGNSLTVRHT 156 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g--~p~p~~~W~~~~~--~~------------------~~~~~~~------~~~~l~i~~~ 156 (187)
+....+.+|+++.|.|.+.+ .+.+.+.|++... .. ...+... ....|.|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 44567788999999999877 5677899998521 10 0112211 1246999999
Q ss_pred CCCCCeEEEEEEec
Q psy15738 157 NRHSAGIYLCVANN 170 (187)
Q Consensus 157 ~~~d~g~y~C~~~n 170 (187)
..+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999875
No 192
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.25 E-value=3.2e-05 Score=45.85 Aligned_cols=37 Identities=22% Similarity=0.494 Sum_probs=30.9
Q ss_pred CcEEEEecCCCCCCeEEEEEEec-CCCCcceeeEEEEEE
Q psy15738 148 GNSLTVRHTNRHSAGIYLCVANN-MVGSSAAASIALHVL 185 (187)
Q Consensus 148 ~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~s~~~~l~v~ 185 (187)
..+|.|.+++.+|.|.|.|.+.+ +.|+. ..+..|.|+
T Consensus 59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~-~~~~~l~~~ 96 (96)
T cd05887 59 DATIMLENVGFSDIGVYICKAVTFPLGNT-QSSTTVTVL 96 (96)
T ss_pred ccEEEEeCCCccccEEEEEEEEeCCCCCe-eEEEEEEEC
Confidence 46899999999999999999765 56777 588888874
No 193
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.24 E-value=1.1e-05 Score=48.24 Aligned_cols=63 Identities=19% Similarity=0.352 Sum_probs=43.8
Q ss_pred EEecCCcEEEEeEeccC--CCCcEEEEeCCe--eCC-------------CCcEEE----eCcEEEEecCCCCCCeEEEEE
Q psy15738 109 EVKKGYSVTLECKADGN--PVPNITWTRKNN--NLP-------------GGEYSY----SGNSLTVRHTNRHSAGIYLCV 167 (187)
Q Consensus 109 ~~~~g~~~~l~C~~~g~--p~p~~~W~~~~~--~~~-------------~~~~~~----~~~~l~i~~~~~~d~g~y~C~ 167 (187)
.+.+|+++.|.|...+. ....+.||+... ... ..+... ....|.|.++..+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 35789999999998765 456799997542 110 011111 123699999999999999999
Q ss_pred EecC
Q psy15738 168 ANNM 171 (187)
Q Consensus 168 ~~n~ 171 (187)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8754
No 194
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.24 E-value=5.9e-06 Score=49.00 Aligned_cols=64 Identities=31% Similarity=0.474 Sum_probs=45.4
Q ss_pred ecCCcEEEEeEeccC-CC-CcEEEEeCCeeCCCCcE--E-E--------eCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738 111 KKGYSVTLECKADGN-PV-PNITWTRKNNNLPGGEY--S-Y--------SGNSLTVRHTNRHSAGIYLCVANNMVGS 174 (187)
Q Consensus 111 ~~g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~~--~-~--------~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 174 (187)
..|..+.|.|.+.|. |. ..++|+++|..+..... . . ..+.|.+......+.+.|.|.+.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 367899999999998 53 57999999987754432 1 0 1234555555456899999999987653
No 195
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.24 E-value=5.1e-06 Score=49.35 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=13.2
Q ss_pred CCCCCCeeEEEEcCeeee
Q psy15738 2 FADSRPESTFWIFGKPIT 19 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~ 19 (187)
.++|.|+++|+++|+++.
T Consensus 24 ~g~P~p~i~W~k~g~~l~ 41 (95)
T cd05722 24 EGEPPPKIEWKKDGVLLN 41 (95)
T ss_pred ccCCCCEEEEEECCeECc
Confidence 467788888888877653
No 196
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.23 E-value=2.7e-06 Score=48.72 Aligned_cols=29 Identities=14% Similarity=-0.072 Sum_probs=19.9
Q ss_pred EEEEEecccceeEEeec---cceeeEEEEEEE
Q psy15738 65 ILAMEKEEEERKKKKKR---KKRKKKKKKKEK 93 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v 93 (187)
|..+..+|.|.|.|.+. +...+..+.|+|
T Consensus 48 I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 48 IKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred ECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 77888899999999554 333355555543
No 197
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.23 E-value=4.5e-06 Score=49.52 Aligned_cols=32 Identities=9% Similarity=-0.023 Sum_probs=21.4
Q ss_pred cceeEEEEEecccceeEEeec-cceeeEEEEEE
Q psy15738 61 YLSYILAMEKEEEERKKKKKR-KKRKKKKKKKE 92 (187)
Q Consensus 61 ~~~~~~~v~~~d~g~y~c~~~-~~~~~~~~~l~ 92 (187)
....|.+|..+|.|.|+|... ....+..++|+
T Consensus 62 ~~L~I~nV~~~D~G~YtC~~~t~~~~~~~~~~~ 94 (95)
T cd05882 62 LIISISNVQLSDEGEYTCSIFTMPVRTAKATVT 94 (95)
T ss_pred EEEEECCCCcccCEEEEEEEEeeccccEEEEEE
Confidence 445588999999999999433 34444444444
No 198
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.22 E-value=5.6e-06 Score=48.66 Aligned_cols=31 Identities=6% Similarity=-0.098 Sum_probs=23.1
Q ss_pred eeEEEEEecccceeEEee--ccceeeEEEEEEE
Q psy15738 63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEK 93 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v 93 (187)
..|..++.+|+|.|+|.+ ..+....++.|.|
T Consensus 57 L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 57 LYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89 (90)
T ss_pred EEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence 338899999999999954 4555666667665
No 199
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.20 E-value=3.6e-05 Score=50.53 Aligned_cols=79 Identities=19% Similarity=0.454 Sum_probs=55.6
Q ss_pred eEEEecCCcEEEEeEec-cCCCCcEEEEeCCeeC----------C---CCcEEE-----eCcEEEEecCCCCCCeEEEEE
Q psy15738 107 KVEVKKGYSVTLECKAD-GNPVPNITWTRKNNNL----------P---GGEYSY-----SGNSLTVRHTNRHSAGIYLCV 167 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~----------~---~~~~~~-----~~~~l~i~~~~~~d~g~y~C~ 167 (187)
...+.+|+++.|.|... +...+.+.|+|....+ . ..+... ....|.|.+++.+|.|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 35678999999999974 5556789999864311 0 011212 346899999999999999999
Q ss_pred Eec-CCCCcceeeEEEEEE
Q psy15738 168 ANN-MVGSSAAASIALHVL 185 (187)
Q Consensus 168 ~~n-~~g~~~s~~~~l~v~ 185 (187)
..- +.|...+...-|.|.
T Consensus 104 F~tfp~G~~~~gt~CLtVt 122 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVT 122 (189)
T ss_pred EEecCCCCCceeEEEEEEE
Confidence 885 456233677777663
No 200
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.20 E-value=5.8e-06 Score=46.92 Aligned_cols=21 Identities=14% Similarity=-0.051 Sum_probs=16.1
Q ss_pred eeEEEEEecccceeEEeeccc
Q psy15738 63 SYILAMEKEEEERKKKKKRKK 83 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c~~~~~ 83 (187)
+.|..+..+|.|.|+|.+...
T Consensus 46 L~I~~~~~~DsG~Y~C~a~N~ 66 (76)
T cd05895 46 LQISKASLADNGEYKCMVSSK 66 (76)
T ss_pred EEECcCCcccCEEEEEEEEeC
Confidence 347888999999999955443
No 201
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.18 E-value=2.7e-05 Score=46.43 Aligned_cols=66 Identities=21% Similarity=0.378 Sum_probs=46.3
Q ss_pred EEecCCcEEEEeEeccC-CCCc--EEEEeCCeeCCCCcEE-------EeCcEEEEecCCCCCCe-EEEEEEecCCCCc
Q psy15738 109 EVKKGYSVTLECKADGN-PVPN--ITWTRKNNNLPGGEYS-------YSGNSLTVRHTNRHSAG-IYLCVANNMVGSS 175 (187)
Q Consensus 109 ~~~~g~~~~l~C~~~g~-p~p~--~~W~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g-~y~C~~~n~~g~~ 175 (187)
.+.+|+.++|.|.+.|. |.+. +.||+++..+...... ....++.+. +.++|.| .|.|.|.+.+...
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~~ 88 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRPE 88 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCcc
Confidence 45789999999999764 6666 7999999887543221 123456654 4555655 9999999876543
No 202
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.18 E-value=2.9e-05 Score=47.28 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=30.4
Q ss_pred cEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738 149 NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185 (187)
Q Consensus 149 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 185 (187)
.+|.|.+++.+|+|.|.|.+....... ...+.|.|.
T Consensus 72 asL~i~nv~~~D~G~Y~C~v~~g~~~~-~~~v~L~V~ 107 (110)
T cd05902 72 ASLVLSRLRYSDSGTYRCEVVLGINDE-QDTVPLEVT 107 (110)
T ss_pred EEEEECCCCHHHCEEEEEEEEECCccc-EEEEEEEEE
Confidence 479999999999999999999976555 578888774
No 203
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.18 E-value=7.3e-06 Score=48.36 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=18.7
Q ss_pred eEEEEEecccceeEEeeccceeeEEEE
Q psy15738 64 YILAMEKEEEERKKKKKRKKRKKKKKK 90 (187)
Q Consensus 64 ~~~~v~~~d~g~y~c~~~~~~~~~~~~ 90 (187)
.|..+..+|.|.|+|.+.....+....
T Consensus 62 ~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 88 (92)
T cd05747 62 EISKVQMSDEGNYTVVVENSEGKQEAQ 88 (92)
T ss_pred EECCCCcccCEeEEEEEEcCCCCEeEE
Confidence 377888999999999555444444433
No 204
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.18 E-value=5.2e-06 Score=49.21 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=17.0
Q ss_pred eeEEEEEecccceeEEeeccce
Q psy15738 63 SYILAMEKEEEERKKKKKRKKR 84 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c~~~~~~ 84 (187)
+.|..+..+|+|.|+|......
T Consensus 62 L~I~~~~~~DsG~Y~C~~~N~~ 83 (94)
T cd05756 62 LWFLPAALEDSGLYTCVVRNST 83 (94)
T ss_pred EEEccCCcccCeEEEEEEcCCC
Confidence 3488999999999999655433
No 205
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.17 E-value=5.3e-06 Score=50.71 Aligned_cols=79 Identities=24% Similarity=0.414 Sum_probs=51.2
Q ss_pred ceEEEecCCcEEEEeEec-cCCCCcEEEEeCCe---e--CC---CC------------cEE-Ee-----CcEEEEecCCC
Q psy15738 106 GKVEVKKGYSVTLECKAD-GNPVPNITWTRKNN---N--LP---GG------------EYS-YS-----GNSLTVRHTNR 158 (187)
Q Consensus 106 ~~~~~~~g~~~~l~C~~~-g~p~p~~~W~~~~~---~--~~---~~------------~~~-~~-----~~~l~i~~~~~ 158 (187)
....+..|+++.|.|... ......+.|++... . +. .. +.. .. ...|.|.+++.
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~ 88 (114)
T PF07686_consen 9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP 88 (114)
T ss_dssp SEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred CeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence 346788999999999998 44456799998432 0 00 00 000 01 13699999999
Q ss_pred CCCeEEEEEEecCCCCcceeeEEEEE
Q psy15738 159 HSAGIYLCVANNMVGSSAAASIALHV 184 (187)
Q Consensus 159 ~d~g~y~C~~~n~~g~~~s~~~~l~v 184 (187)
+|+|.|.|.+.............|+|
T Consensus 89 ~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 89 SDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp GGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CcCEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999999872222233444443
No 206
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.17 E-value=2.2e-06 Score=49.34 Aligned_cols=27 Identities=4% Similarity=0.069 Sum_probs=18.0
Q ss_pred EEEEEecccceeEEeeccceeeEEEEE
Q psy15738 65 ILAMEKEEEERKKKKKRKKRKKKKKKK 91 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~~~~~~~~~~l 91 (187)
|..+..+|.|.|+|.+..........+
T Consensus 52 i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 78 (82)
T cd05856 52 LKNLKPEDSGKYTCHVSNRAGEINATY 78 (82)
T ss_pred EccCChhhCEEEEEEEEcCCccEEEEE
Confidence 678888999999995554333333333
No 207
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.17 E-value=1.2e-05 Score=48.01 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=16.5
Q ss_pred EecccceeEEeeccc--e-eeEEEEEEE
Q psy15738 69 EKEEEERKKKKKRKK--R-KKKKKKKEK 93 (187)
Q Consensus 69 ~~~d~g~y~c~~~~~--~-~~~~~~l~v 93 (187)
..+|.|.|+|.+... . .+..+.|.|
T Consensus 72 ~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 72 GRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CcCcCEEEEEEEEccccceecceEEEEe
Confidence 678999999955432 2 455566654
No 208
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.17 E-value=8.2e-06 Score=48.37 Aligned_cols=17 Identities=6% Similarity=-0.126 Sum_probs=11.9
Q ss_pred EEEEE-ecccceeEEeec
Q psy15738 65 ILAME-KEEEERKKKKKR 81 (187)
Q Consensus 65 ~~~v~-~~d~g~y~c~~~ 81 (187)
|..+. ..|.|.|+|.+.
T Consensus 62 I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 62 INNPQKARDAGSYQCLAI 79 (94)
T ss_pred EccCCccCcCEEEEEEEE
Confidence 54544 479999999554
No 209
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.16 E-value=5.1e-05 Score=43.82 Aligned_cols=59 Identities=19% Similarity=0.458 Sum_probs=41.0
Q ss_pred EEEEeEeccC-CCCcEEEEeCCeeCCCCcEE----------EeCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738 116 VTLECKADGN-PVPNITWTRKNNNLPGGEYS----------YSGNSLTVRHTNRHSAGIYLCVANNMVGS 174 (187)
Q Consensus 116 ~~l~C~~~g~-p~p~~~W~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 174 (187)
+.|.|.+.|. |...++|+++|..+...... ...+.|.+......+...|.|.+.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 5789999874 67789999999886543211 11235666554455677999999987644
No 210
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.12 E-value=1.1e-05 Score=46.21 Aligned_cols=28 Identities=7% Similarity=-0.009 Sum_probs=19.5
Q ss_pred EEEEEecccceeEEeeccc--eeeEEEEEE
Q psy15738 65 ILAMEKEEEERKKKKKRKK--RKKKKKKKE 92 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~~~--~~~~~~~l~ 92 (187)
|..+..+|.|.|+|.+... .....+.|.
T Consensus 51 I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 51 IYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred EccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 8889999999999955543 344444443
No 211
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.12 E-value=2.2e-05 Score=43.00 Aligned_cols=57 Identities=39% Similarity=0.719 Sum_probs=43.5
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeCCCCcE---------EEeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNLPGGEY---------SYSGNSLTVRHTNRHSAGIYLCVANNMV 172 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~---------~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 172 (187)
+.|.|.+.+.+.+.+.|++++........ ......|.+.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 36889998867788999998876543321 1234578999999999999999998865
No 212
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.10 E-value=9.3e-06 Score=48.26 Aligned_cols=31 Identities=10% Similarity=0.008 Sum_probs=21.1
Q ss_pred ceeEEEEEecccceeEEee--ccceeeEEEEEE
Q psy15738 62 LSYILAMEKEEEERKKKKK--RKKRKKKKKKKE 92 (187)
Q Consensus 62 ~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~ 92 (187)
...|..++.+|.|.|+|.+ ..+..+.++.|.
T Consensus 63 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 95 (96)
T cd05732 63 SLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLE 95 (96)
T ss_pred EEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEe
Confidence 3447888899999999944 444445555554
No 213
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.09 E-value=1.8e-05 Score=45.16 Aligned_cols=17 Identities=6% Similarity=0.094 Sum_probs=15.7
Q ss_pred CCCCCeeEEEEcCeeee
Q psy15738 3 ADSRPESTFWIFGKPIT 19 (187)
Q Consensus 3 ~~p~p~i~w~~~g~~l~ 19 (187)
++|+++|.||++|++|.
T Consensus 11 skP~a~i~W~k~~~~l~ 27 (80)
T cd05885 11 SKPAATLRWYRDRKELK 27 (80)
T ss_pred ccCCCeEEEEECCEECC
Confidence 68999999999999985
No 214
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.09 E-value=1.9e-05 Score=46.54 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=13.4
Q ss_pred CCCCeeEEEEcCeeee
Q psy15738 4 DSRPESTFWIFGKPIT 19 (187)
Q Consensus 4 ~p~p~i~w~~~g~~l~ 19 (187)
.|.|.+.|++||+++.
T Consensus 27 ~~~p~i~Wyk~~~~i~ 42 (92)
T cd05757 27 NTLPPVQWYKDCKLLE 42 (92)
T ss_pred CCCCcEEEeECCEECC
Confidence 3788999999998774
No 215
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.09 E-value=6.8e-05 Score=43.10 Aligned_cols=62 Identities=18% Similarity=0.364 Sum_probs=45.2
Q ss_pred EEecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecC
Q psy15738 109 EVKKGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNM 171 (187)
Q Consensus 109 ~~~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 171 (187)
.+..|++++|.|.....+.| .+.|..-+...... ......+|.+..+...|+|.+.|.+...
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~-~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI-LNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee-ccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 56789999999998665444 89998654321110 0123478999999999999999999744
No 216
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.04 E-value=5.8e-05 Score=45.02 Aligned_cols=65 Identities=22% Similarity=0.261 Sum_probs=45.0
Q ss_pred EEEecCCcEEEEeEeccC-CCCcEEEEeCCeeC--------------CCCcEEEe------CcEEEEecCCCCCCeEEEE
Q psy15738 108 VEVKKGYSVTLECKADGN-PVPNITWTRKNNNL--------------PGGEYSYS------GNSLTVRHTNRHSAGIYLC 166 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g~-p~p~~~W~~~~~~~--------------~~~~~~~~------~~~l~i~~~~~~d~g~y~C 166 (187)
+.+.+|++++|.|..... ....+.|++..... ..++.... ...|.|.++..+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 356789999999987653 45568899864211 01112111 1369999999999999999
Q ss_pred EEecCC
Q psy15738 167 VANNMV 172 (187)
Q Consensus 167 ~~~n~~ 172 (187)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 988754
No 217
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.04 E-value=3.5e-05 Score=46.04 Aligned_cols=31 Identities=13% Similarity=0.027 Sum_probs=22.1
Q ss_pred eeEEEEEecccceeEEee--ccceeeEEEEEEE
Q psy15738 63 SYILAMEKEEEERKKKKK--RKKRKKKKKKKEK 93 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v 93 (187)
+.|..++.+|.|.|+|.+ ..+....++.|+|
T Consensus 66 L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 66 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence 348899999999999944 4455555666553
No 218
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.97 E-value=4.5e-05 Score=41.49 Aligned_cols=61 Identities=23% Similarity=0.417 Sum_probs=42.1
Q ss_pred CCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEeC
Q psy15738 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK 187 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~~ 187 (187)
.+++.|.|.+ ...|.|++ |...... ...+|.+-.....-.|.|.|.+.+ . +....|.|.|+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~----~~~tlnLGs~~~DPRG~Y~C~~s~----~-~~~~~LQVyYR 66 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEV----SNTLLDLGSRINDPRGTYSCKESE----P-NKEKTLQVYYR 66 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccccc----cccEEeccCcccCCCcceEecCcc----C-CCcEEEEEEEE
Confidence 4578999965 24699999 5433222 146777777777779999998876 2 35566777764
No 219
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.95 E-value=8.1e-05 Score=45.21 Aligned_cols=62 Identities=23% Similarity=0.462 Sum_probs=42.3
Q ss_pred EEecCCcEEEEeEeccCC-CCcEEEEeCCee---C--------C------------CCcEEE--e----CcEEEEecCCC
Q psy15738 109 EVKKGYSVTLECKADGNP-VPNITWTRKNNN---L--------P------------GGEYSY--S----GNSLTVRHTNR 158 (187)
Q Consensus 109 ~~~~g~~~~l~C~~~g~p-~p~~~W~~~~~~---~--------~------------~~~~~~--~----~~~l~i~~~~~ 158 (187)
.+.+|++++|.|...+.. ...+.||+...- . . ..+... . ...|.|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 467899999999986543 457999974321 0 0 111211 1 13599999999
Q ss_pred CCCeEEEEEEec
Q psy15738 159 HSAGIYLCVANN 170 (187)
Q Consensus 159 ~d~g~y~C~~~n 170 (187)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999864
No 220
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=97.94 E-value=3.1e-05 Score=44.07 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=15.3
Q ss_pred CCCCCCeeEEEEcCeee
Q psy15738 2 FADSRPESTFWIFGKPI 18 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l 18 (187)
.++|.|+++|++||.++
T Consensus 8 ~G~P~P~i~W~k~g~~l 24 (77)
T cd05874 8 KGKPPPSFSWTRNGTHF 24 (77)
T ss_pred cccCCCeEEEEECCeEC
Confidence 57899999999999876
No 221
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=97.94 E-value=5.7e-05 Score=44.14 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=20.9
Q ss_pred eEEEEEecccceeEEeec--cceeeEEEEEEE
Q psy15738 64 YILAMEKEEEERKKKKKR--KKRKKKKKKKEK 93 (187)
Q Consensus 64 ~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v 93 (187)
.|..+..+|.|.|+|.+. .+.....+.|.|
T Consensus 56 ~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 56 KIFNIQPEDEGTYECEAENIKGKDKHQARVYV 87 (88)
T ss_pred EECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 377888899999999544 444555555554
No 222
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.94 E-value=4.2e-05 Score=45.23 Aligned_cols=17 Identities=6% Similarity=0.014 Sum_probs=14.0
Q ss_pred CCCCCeeEEEEcCeeee
Q psy15738 3 ADSRPESTFWIFGKPIT 19 (187)
Q Consensus 3 ~~p~p~i~w~~~g~~l~ 19 (187)
.++.|+++||++|+++.
T Consensus 26 ~~~~~~v~WYKd~~~l~ 42 (95)
T cd05897 26 NRTDVELQWYKDSVLLD 42 (95)
T ss_pred CCCCCcEEEccCCEECc
Confidence 56788999999998874
No 223
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=97.91 E-value=3.8e-05 Score=43.69 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=15.7
Q ss_pred CCCCCCeeEEEEcCeeee
Q psy15738 2 FADSRPESTFWIFGKPIT 19 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~ 19 (187)
.++|.|+++|+++|.++.
T Consensus 8 ~G~P~P~v~W~k~g~~l~ 25 (77)
T cd05733 8 KGNPPPTFSWTRNGTHFD 25 (77)
T ss_pred cccCCCeEEEEECCeECC
Confidence 578999999999998774
No 224
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.90 E-value=9.5e-05 Score=45.58 Aligned_cols=67 Identities=25% Similarity=0.453 Sum_probs=46.2
Q ss_pred CceEEEecCCcEEEEeEeccC-CCCcEEEEeCCe--eC----------C---CCcEEEe------CcEEEEecCCCCCCe
Q psy15738 105 AGKVEVKKGYSVTLECKADGN-PVPNITWTRKNN--NL----------P---GGEYSYS------GNSLTVRHTNRHSAG 162 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~-p~p~~~W~~~~~--~~----------~---~~~~~~~------~~~l~i~~~~~~d~g 162 (187)
+....+..|+++.|.|..... ....+.|++... .+ . ..+.... ...|.|.++..+|+|
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg 85 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA 85 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence 345678899999999997653 345689998421 10 0 1122111 236999999999999
Q ss_pred EEEEEEecC
Q psy15738 163 IYLCVANNM 171 (187)
Q Consensus 163 ~y~C~~~n~ 171 (187)
.|.|.+...
T Consensus 86 ~Y~C~~~~~ 94 (116)
T cd07706 86 KYFCALSTL 94 (116)
T ss_pred EEEEEEECC
Confidence 999999853
No 225
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=97.87 E-value=0.00013 Score=42.66 Aligned_cols=33 Identities=6% Similarity=-0.077 Sum_probs=21.5
Q ss_pred ccceeEEEEEecccceeEEeecccee--eEEEEEE
Q psy15738 60 HYLSYILAMEKEEEERKKKKKRKKRK--KKKKKKE 92 (187)
Q Consensus 60 ~~~~~~~~v~~~d~g~y~c~~~~~~~--~~~~~l~ 92 (187)
.....|..+..+|.|.|+|....... +..+.|.
T Consensus 55 ~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~ 89 (90)
T PF07679_consen 55 SSSLTIKNVTREDAGTYTCVASNSSGEATASVNLT 89 (90)
T ss_dssp EEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEE
T ss_pred eeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence 34444788999999999995544433 4444444
No 226
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=97.85 E-value=4.9e-05 Score=45.04 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=13.0
Q ss_pred EEEEE-ecccceeEEeeccc
Q psy15738 65 ILAME-KEEEERKKKKKRKK 83 (187)
Q Consensus 65 ~~~v~-~~d~g~y~c~~~~~ 83 (187)
|..+. .+|.|.|+|.+...
T Consensus 62 i~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05848 62 ISNPSEVKDSGRYQCLATNS 81 (94)
T ss_pred EccCCccCcCEEEEEEEEcC
Confidence 55553 57999999965533
No 227
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=97.84 E-value=0.00018 Score=42.83 Aligned_cols=30 Identities=3% Similarity=-0.110 Sum_probs=20.7
Q ss_pred eeEEEEEecccceeEEeec--cceeeEEEEEE
Q psy15738 63 SYILAMEKEEEERKKKKKR--KKRKKKKKKKE 92 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~ 92 (187)
..|..++.+|.|.|+|.+. .+..+.++.|+
T Consensus 65 L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 96 (97)
T cd05869 65 LTLKYIQYTDAGEYLCTASNTIGQDSQSMYLE 96 (97)
T ss_pred EEEecCccCcCEEEEEEEecCCCCeeEEEEEE
Confidence 4477888999999999554 44444555554
No 228
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=97.83 E-value=0.00018 Score=41.40 Aligned_cols=28 Identities=4% Similarity=-0.021 Sum_probs=18.3
Q ss_pred EEEEEecccceeEEeecc--ceeeEEEEEE
Q psy15738 65 ILAMEKEEEERKKKKKRK--KRKKKKKKKE 92 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~~--~~~~~~~~l~ 92 (187)
|..+..+|.|.|.|.... +..+.++.|.
T Consensus 55 i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 55 LESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred EeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 667888999999995543 3334444443
No 229
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.79 E-value=0.0004 Score=43.05 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=44.8
Q ss_pred CceEEEecCCcEEEEeEeccCC------CCcEEEEeCCeeC---------C-C--------CcEEE------eCcEEEEe
Q psy15738 105 AGKVEVKKGYSVTLECKADGNP------VPNITWTRKNNNL---------P-G--------GEYSY------SGNSLTVR 154 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p------~p~~~W~~~~~~~---------~-~--------~~~~~------~~~~l~i~ 154 (187)
|+.+.+..|+.+.|.|...... ...+.|++...-- . . ++... ....|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4456788999999999864321 2358899853210 0 0 11111 12469999
Q ss_pred cCCCCCCeEEEEEEecC
Q psy15738 155 HTNRHSAGIYLCVANNM 171 (187)
Q Consensus 155 ~~~~~d~g~y~C~~~n~ 171 (187)
++..+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999998764
No 230
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=97.79 E-value=9.3e-05 Score=43.72 Aligned_cols=17 Identities=12% Similarity=-0.074 Sum_probs=11.6
Q ss_pred EEEEE-ecccceeEEeec
Q psy15738 65 ILAME-KEEEERKKKKKR 81 (187)
Q Consensus 65 ~~~v~-~~d~g~y~c~~~ 81 (187)
|..+. .+|.|.|+|.+.
T Consensus 61 I~~~~~~~D~G~Y~C~A~ 78 (93)
T cd05849 61 INNPDKYKDAGRYVCIVS 78 (93)
T ss_pred ECcCCcCCCCEEEEEEEE
Confidence 44553 579999999554
No 231
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=97.79 E-value=5.5e-05 Score=42.04 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=15.5
Q ss_pred CCCCCCeeEEEEcCeeee
Q psy15738 2 FADSRPESTFWIFGKPIT 19 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~ 19 (187)
++.|.|+|.|+++|+++.
T Consensus 11 ~G~P~P~v~W~k~g~~l~ 28 (69)
T cd05739 11 VGAPMPYVKWMKGGEELT 28 (69)
T ss_pred eecCCCEEEEEECCEECC
Confidence 578999999999998763
No 232
>KOG3515|consensus
Probab=97.79 E-value=2.4e-05 Score=61.78 Aligned_cols=78 Identities=22% Similarity=0.372 Sum_probs=60.1
Q ss_pred EEecCCcEEEEeEeccCCCC-cEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEEe
Q psy15738 109 EVKKGYSVTLECKADGNPVP-NITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLC 186 (187)
Q Consensus 109 ~~~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~~ 186 (187)
.+..|+.+.|.|.+.+.|++ .+.|++.+.............+|.+....+...+.|.|.+.|..+........+.|.+
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~ 96 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDY 96 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccccCceecceeecccc
Confidence 67899999999999988765 7999999876652222345678888888888889999999999776655555555544
No 233
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=97.78 E-value=9e-05 Score=42.13 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=15.6
Q ss_pred CCCCCCCeeEEEEcCeee
Q psy15738 1 MFADSRPESTFWIFGKPI 18 (187)
Q Consensus 1 ~~~~p~p~i~w~~~g~~l 18 (187)
+.++|.|+++|+++|+++
T Consensus 7 ~~G~P~P~v~W~k~g~~~ 24 (77)
T cd05875 7 AKGNPVPTFQWTRNGKFF 24 (77)
T ss_pred ccccCCCEEEEEECCEEc
Confidence 358899999999999876
No 234
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.77 E-value=0.00049 Score=40.62 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=38.1
Q ss_pred CCcEEEEeEeccCCCC--cEEEEeCCeeCCCCc----EEE-eCcE---EEEecCCCCCCeEEEEEEecCCC
Q psy15738 113 GYSVTLECKADGNPVP--NITWTRKNNNLPGGE----YSY-SGNS---LTVRHTNRHSAGIYLCVANNMVG 173 (187)
Q Consensus 113 g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~----~~~-~~~~---l~i~~~~~~d~g~y~C~~~n~~g 173 (187)
++.+.|.|.+.|..++ .+.|++++....... ... ..+. .....+...+...|.|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 6789999999997444 789999996332221 111 1111 11223344578999999987644
No 235
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=97.77 E-value=4.4e-05 Score=44.18 Aligned_cols=29 Identities=10% Similarity=0.009 Sum_probs=20.1
Q ss_pred EEEEEecccceeEEeecc--ceeeEEEEEEE
Q psy15738 65 ILAMEKEEEERKKKKKRK--KRKKKKKKKEK 93 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~~--~~~~~~~~l~v 93 (187)
|.+++.+|+|.|+|.+.. ...+.+..|.|
T Consensus 53 I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 53 IPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred ECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 788889999999995543 33444555544
No 236
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.75 E-value=0.00018 Score=42.02 Aligned_cols=62 Identities=27% Similarity=0.417 Sum_probs=41.5
Q ss_pred CCcEEEEeEe-ccCCCCcEEEEeCCeeCCCCcE----------EEeCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738 113 GYSVTLECKA-DGNPVPNITWTRKNNNLPGGEY----------SYSGNSLTVRHTNRHSAGIYLCVANNMVGS 174 (187)
Q Consensus 113 g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 174 (187)
|+.+.+.|.+ .|+|+|.+.|+.++........ ....+.|.+......+...+.|.+.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 6799999976 5678899999999976611111 111245666554445678999999987654
No 237
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.75 E-value=0.00064 Score=41.53 Aligned_cols=62 Identities=18% Similarity=0.361 Sum_probs=39.9
Q ss_pred EecCCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcEE----------EeCcEEEEecCCCCCCe-EEEEEEecCC
Q psy15738 110 VKKGYSVTLECKADGNPV--PNITWTRKNNNLPGGEYS----------YSGNSLTVRHTNRHSAG-IYLCVANNMV 172 (187)
Q Consensus 110 ~~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~g-~y~C~~~n~~ 172 (187)
...|+.++|.|.+.|.-+ ..++|++||..+...... ...+.|.+.. ...|.+ .|.|.+....
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 456788999999998744 478999999886432111 0122344443 334444 5999999864
No 238
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.74 E-value=0.00023 Score=38.47 Aligned_cols=52 Identities=27% Similarity=0.549 Sum_probs=36.9
Q ss_pred EecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEec
Q psy15738 110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANN 170 (187)
Q Consensus 110 ~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 170 (187)
...|.+|+|.|+..+ ..+.|.+++..+... ...+.+.+-. ++.|.|.|.+.+
T Consensus 4 sisGTtVtlTCP~~~---~~i~W~~n~~~~~g~-----~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 4 SISGTTVTVTCPLSG---DDIKWKKNDQVSQGS-----DEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EEeccEEEEECCCCC---CCceEEeCCccCCCC-----CceEEeeccC-CCCceEEEEeCC
Confidence 356899999997653 239999999655442 2344555555 789999999864
No 239
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.72 E-value=0.00018 Score=41.70 Aligned_cols=23 Identities=9% Similarity=0.006 Sum_probs=16.8
Q ss_pred EEEEEecccceeEEeeccceeeE
Q psy15738 65 ILAMEKEEEERKKKKKRKKRKKK 87 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~~~~~~~ 87 (187)
|..+..+|.|.|+|.+.......
T Consensus 55 i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05728 55 ITKLSLSDSGMYQCVAENKHGTI 77 (85)
T ss_pred EeeCCHHHCEEEEEEEECCCCeE
Confidence 77888999999999555443333
No 240
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=97.71 E-value=5.9e-05 Score=42.96 Aligned_cols=18 Identities=6% Similarity=-0.036 Sum_probs=14.3
Q ss_pred CCCCCCeeEEEEcCeeee
Q psy15738 2 FADSRPESTFWIFGKPIT 19 (187)
Q Consensus 2 ~~~p~p~i~w~~~g~~l~ 19 (187)
.+.|.|.++|++++.++.
T Consensus 11 ~g~P~p~v~W~~~~~~~~ 28 (78)
T cd05743 11 TGVPTPIINWRLNWGHVP 28 (78)
T ss_pred EEecCCEEEEEECCeECC
Confidence 367999999999887653
No 241
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.71 E-value=0.00047 Score=38.93 Aligned_cols=57 Identities=26% Similarity=0.479 Sum_probs=37.4
Q ss_pred EEEEeEeccC-CC-CcEEEEeCCeeCCCCcEE-----------EeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738 116 VTLECKADGN-PV-PNITWTRKNNNLPGGEYS-----------YSGNSLTVRHTNRHSAGIYLCVANNMV 172 (187)
Q Consensus 116 ~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~n~~ 172 (187)
+.|.|.+.|. |+ ..+.|+++|..+..+... ...+.|.+......+...|.|.+....
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 5799999997 44 478999999864332111 112345554445556789999998754
No 242
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.70 E-value=9.2e-05 Score=43.07 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=16.4
Q ss_pred eEEEEEecccceeEEeeccc
Q psy15738 64 YILAMEKEEEERKKKKKRKK 83 (187)
Q Consensus 64 ~~~~v~~~d~g~y~c~~~~~ 83 (187)
.|.+++.+|+|.|+|.+...
T Consensus 51 ~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 51 LIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred EEeCCCHHHCEEEEEEEEec
Confidence 38889999999999966654
No 243
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=97.68 E-value=0.00023 Score=41.88 Aligned_cols=63 Identities=3% Similarity=0.013 Sum_probs=38.0
Q ss_pred ceEEccCCCCeeEEEeC-eEeeeccEEEeeccccccceeEEEEEecccceeEEeec---cceeeEEEEEEE
Q psy15738 27 AIMFADSRPESTFWIFG-KLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKR---KKRKKKKKKKEK 93 (187)
Q Consensus 27 ~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v 93 (187)
.|...+. .+...|+++ ..+...+..+... .....|..++.+|.|.|.|.+. +...+..+.|.|
T Consensus 24 ~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 24 TCEAEGQ-ATYIWWVNNGSLLVPPRLQLSND---NRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEEeCCC-CCEEEEEECCEECCCCCEEEeCC---CCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 4555555 667777644 4444444333221 1234488999999999999553 344556677766
No 244
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=97.67 E-value=0.00039 Score=40.74 Aligned_cols=30 Identities=3% Similarity=-0.051 Sum_probs=20.4
Q ss_pred eeEEEEEecccceeEEeec--cceeeEEEEEE
Q psy15738 63 SYILAMEKEEEERKKKKKR--KKRKKKKKKKE 92 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~ 92 (187)
..|..+..+|.|.|+|.+. .+.....+.|.
T Consensus 58 L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~ 89 (90)
T cd04972 58 LQLSNITSETQTTVTCTAENPVGQANVSVQVT 89 (90)
T ss_pred EEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence 3378889999999999544 44444555554
No 245
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.67 E-value=0.00095 Score=39.61 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=26.6
Q ss_pred CcEEEEecCCCCCCeEEEEEEecC-CCCcceeeEEE
Q psy15738 148 GNSLTVRHTNRHSAGIYLCVANNM-VGSSAAASIAL 182 (187)
Q Consensus 148 ~~~l~i~~~~~~d~g~y~C~~~n~-~g~~~s~~~~l 182 (187)
..+|.|.+++.+|.|.|.|..... .|.. .+.+.+
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~-~~~i~~ 93 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQGSW-EKVIEV 93 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCCCe-EEEEEE
Confidence 368999999999999999999864 5655 355443
No 246
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=97.64 E-value=0.00024 Score=41.44 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=20.5
Q ss_pred EEEEEecccceeEEeec--cceeeEEEEEEE
Q psy15738 65 ILAMEKEEEERKKKKKR--KKRKKKKKKKEK 93 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v 93 (187)
|..++.+|.|.|.|.+. .+.....+.|.|
T Consensus 57 i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 57 IPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred ECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 77888999999999444 444455555554
No 247
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.63 E-value=0.00023 Score=42.95 Aligned_cols=61 Identities=20% Similarity=0.428 Sum_probs=41.4
Q ss_pred EecCCcEEEEeEeccCCCCcEEEEeCCee----C------CC-------------CcEEE----eCcEEEEecCCCCCCe
Q psy15738 110 VKKGYSVTLECKADGNPVPNITWTRKNNN----L------PG-------------GEYSY----SGNSLTVRHTNRHSAG 162 (187)
Q Consensus 110 ~~~g~~~~l~C~~~g~p~p~~~W~~~~~~----~------~~-------------~~~~~----~~~~l~i~~~~~~d~g 162 (187)
+..|++++|.|.........+.|++...- . .. .+... ....|.|.++..+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 56799999999986554456889874421 0 00 00110 1236999999999999
Q ss_pred EEEEEEec
Q psy15738 163 IYLCVANN 170 (187)
Q Consensus 163 ~y~C~~~n 170 (187)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99998764
No 248
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=97.61 E-value=0.00045 Score=40.70 Aligned_cols=65 Identities=8% Similarity=0.051 Sum_probs=36.8
Q ss_pred ceEEccCCCCeeEEEe--CeEeee-ccEEEeeccccccceeEEEEEecccceeEEeecc---ceeeEEEEEE
Q psy15738 27 AIMFADSRPESTFWIF--GKLITS-CSYIILATSLLHYLSYILAMEKEEEERKKKKKRK---KRKKKKKKKE 92 (187)
Q Consensus 27 ~~~~~~~~~~~~~w~~--~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~ 92 (187)
.|.+.+.+ ....|+. +..+.. .+......+.......|..++.+|.|.|+|.+.. .....++.|+
T Consensus 21 ~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 21 LCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred EEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence 45554443 4677763 333332 3333333333334555889999999999995543 3445555554
No 249
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=97.59 E-value=0.00052 Score=40.44 Aligned_cols=65 Identities=12% Similarity=0.061 Sum_probs=36.5
Q ss_pred ceEEccCCCCeeEEEe--CeEeee-ccEEEeeccccccceeEEEEEecccceeEEeec---cceeeEEEEEEE
Q psy15738 27 AIMFADSRPESTFWIF--GKLITS-CSYIILATSLLHYLSYILAMEKEEEERKKKKKR---KKRKKKKKKKEK 93 (187)
Q Consensus 27 ~~~~~~~~~~~~~w~~--~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v 93 (187)
.|.+.+.+. ...|++ +..+.. .++.+...+ ......|..+..+|.|.|+|.+. +.....++.|.+
T Consensus 21 ~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 21 TCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEG-VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred EEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCC-CeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 344444444 555663 333332 344443322 12234488999999999999555 344456666665
No 250
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.57 E-value=0.0002 Score=42.11 Aligned_cols=18 Identities=11% Similarity=0.030 Sum_probs=12.2
Q ss_pred EEEEE-ecccceeEEeecc
Q psy15738 65 ILAME-KEEEERKKKKKRK 82 (187)
Q Consensus 65 ~~~v~-~~d~g~y~c~~~~ 82 (187)
|..+. .+|.|.|+|.+..
T Consensus 62 i~~~~~~~d~G~Y~C~a~N 80 (91)
T cd04967 62 ISNPSKAKDAGRYQCLASN 80 (91)
T ss_pred EecCCccCCCEEEEEEEEc
Confidence 44554 3789999995553
No 251
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.54 E-value=0.00051 Score=39.43 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=14.2
Q ss_pred CCCCeeEEEEcCeeee
Q psy15738 4 DSRPESTFWIFGKPIT 19 (187)
Q Consensus 4 ~p~p~i~w~~~g~~l~ 19 (187)
+|.|.|+|+++|+++.
T Consensus 12 ~P~~~v~W~~~g~~l~ 27 (82)
T cd05759 12 KPAAEIIWFRDGEVLD 27 (82)
T ss_pred cCCCEEEEEECCEEcc
Confidence 6889999999999875
No 252
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.52 E-value=0.00045 Score=40.99 Aligned_cols=33 Identities=12% Similarity=-0.109 Sum_probs=21.5
Q ss_pred cceeEEEEEecccceeEEeec-cceeeEEEEEEE
Q psy15738 61 YLSYILAMEKEEEERKKKKKR-KKRKKKKKKKEK 93 (187)
Q Consensus 61 ~~~~~~~v~~~d~g~y~c~~~-~~~~~~~~~l~v 93 (187)
....|..++.+|+|.|+|... ....+.++.|+|
T Consensus 62 ~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~~l~v 95 (95)
T cd07701 62 LSISISDVSLSDEGQYTCSLFTMPVKTSKAYLTV 95 (95)
T ss_pred EEEEECcCCcccCEEEEEEeEeecCccEEEEEEC
Confidence 344589999999999999333 233345555543
No 253
>KOG1480|consensus
Probab=97.50 E-value=2.3e-05 Score=61.40 Aligned_cols=84 Identities=19% Similarity=0.413 Sum_probs=61.4
Q ss_pred ecCCceEEEecCCcEEEEeEe-ccCCCCcEEEEeCCeeCCCCcEE--EeCcEEEEecCCCCCCeEEEEEEecCCCCccee
Q psy15738 102 VSGAGKVEVKKGYSVTLECKA-DGNPVPNITWTRKNNNLPGGEYS--YSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAA 178 (187)
Q Consensus 102 ~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~ 178 (187)
...+....+..+....+.|.. .+.|...+.|++++....+.... .....+.+..+...|.|.|+|.+.|..+...+-
T Consensus 133 ~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~ 212 (909)
T KOG1480|consen 133 EQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSD 212 (909)
T ss_pred ccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhcccccc
Confidence 344445567777888888874 67788889999999776553221 234668888899999999999999998877655
Q ss_pred eEEEEEE
Q psy15738 179 SIALHVL 185 (187)
Q Consensus 179 ~~~l~v~ 185 (187)
++.+.+.
T Consensus 213 ~~~v~vy 219 (909)
T KOG1480|consen 213 PATVQVY 219 (909)
T ss_pred ceEEEEE
Confidence 5555543
No 254
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=97.50 E-value=0.00033 Score=40.00 Aligned_cols=30 Identities=3% Similarity=-0.197 Sum_probs=19.9
Q ss_pred eEEEEEecccceeEEeeccceeeEEEEEEE
Q psy15738 64 YILAMEKEEEERKKKKKRKKRKKKKKKKEK 93 (187)
Q Consensus 64 ~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v 93 (187)
.|..+..+|.|.|+|.+.....+....+.|
T Consensus 48 ~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v 77 (79)
T cd04973 48 QIKDAVPRDSGLYACVTSSPSGSDTTYFSV 77 (79)
T ss_pred EECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence 377888899999999665544444444433
No 255
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.50 E-value=0.00034 Score=41.70 Aligned_cols=20 Identities=5% Similarity=0.023 Sum_probs=13.9
Q ss_pred eEEEEEecc-cceeEEeeccc
Q psy15738 64 YILAMEKEE-EERKKKKKRKK 83 (187)
Q Consensus 64 ~~~~v~~~d-~g~y~c~~~~~ 83 (187)
.|..+..+| .|.|.|.+...
T Consensus 67 ~I~~v~~~d~~G~Y~C~A~N~ 87 (98)
T cd05758 67 TISNTQESDFQTSYNCTAWNS 87 (98)
T ss_pred EECCccccccceeEEEEEEcC
Confidence 366777745 79999955533
No 256
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.49 E-value=0.00031 Score=41.03 Aligned_cols=32 Identities=6% Similarity=-0.115 Sum_probs=21.9
Q ss_pred eeEEEEEecccceeEEeec---cceeeEEEEEEEE
Q psy15738 63 SYILAMEKEEEERKKKKKR---KKRKKKKKKKEKR 94 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v~ 94 (187)
..|..++.+|.|.|.|.+. ......+..|.|.
T Consensus 53 L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~ 87 (89)
T cd04979 53 LLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL 87 (89)
T ss_pred EEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence 4488899999999999554 2334455555553
No 257
>KOG3515|consensus
Probab=97.45 E-value=0.0017 Score=51.76 Aligned_cols=138 Identities=17% Similarity=0.217 Sum_probs=81.0
Q ss_pred ceEEc-cCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecc-cceeEEee---ccceeeEEEEEEEEcCCeeEE
Q psy15738 27 AIMFA-DSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEE-EERKKKKK---RKKRKKKKKKKEKRIPPRIIY 101 (187)
Q Consensus 27 ~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~g~y~c~~---~~~~~~~~~~l~v~~~p~~~~ 101 (187)
.|.+. +.+..+..|.+...--.|++.......+ ......+| .+.|.|.+ .+........+.+.++|.-.
T Consensus 28 ~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~- 101 (741)
T KOG3515|consen 28 PCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTL-----VTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACL- 101 (741)
T ss_pred eeecCCCCCCcceEEEecCcccccccccccCCce-----eeecchhhhhhhhhhhhcccccCceecceeeccccCcccc-
Confidence 34444 5555677777552222255433332222 23333333 46777733 34445566788888877653
Q ss_pred ecCCceEEEecCCcEEEEeEe--ccCCCCcEEEEeCCeeCCCCc-------------EEEeCcEEEEecCCCCCCeEEEE
Q psy15738 102 VSGAGKVEVKKGYSVTLECKA--DGNPVPNITWTRKNNNLPGGE-------------YSYSGNSLTVRHTNRHSAGIYLC 166 (187)
Q Consensus 102 ~~~~~~~~~~~g~~~~l~C~~--~g~p~p~~~W~~~~~~~~~~~-------------~~~~~~~l~i~~~~~~d~g~y~C 166 (187)
..........+..+.+.|.+ .+.|.+.+.|..++....... .....+.+.+......+.|.|+|
T Consensus 102 -~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC 180 (741)
T KOG3515|consen 102 -PELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTC 180 (741)
T ss_pred -ccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEc
Confidence 22222345677888999965 445677899999886432110 11234567777777888999999
Q ss_pred EEecC
Q psy15738 167 VANNM 171 (187)
Q Consensus 167 ~~~n~ 171 (187)
.|.|.
T Consensus 181 ~A~nr 185 (741)
T KOG3515|consen 181 PANNR 185 (741)
T ss_pred ccccc
Confidence 99995
No 258
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.36 E-value=0.0025 Score=37.74 Aligned_cols=62 Identities=11% Similarity=0.203 Sum_probs=37.6
Q ss_pred CcEEEEeEe-ccCCCCcEEEEeCCeeCCCCcE-------EEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738 114 YSVTLECKA-DGNPVPNITWTRKNNNLPGGEY-------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSS 175 (187)
Q Consensus 114 ~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 175 (187)
....+.|.+ .|.|.+.|.|+++......... ....+.|.+......+...|.|.+.+..-..
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 355778998 5779999999997211100000 1112355554444445669999999986443
No 259
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.35 E-value=0.0017 Score=40.07 Aligned_cols=66 Identities=24% Similarity=0.472 Sum_probs=44.1
Q ss_pred CceEEEecCCcEEEEeEeccCC--CCcEEEEeCCe---e--C------------C---CCcEEE--eC----cEEEEecC
Q psy15738 105 AGKVEVKKGYSVTLECKADGNP--VPNITWTRKNN---N--L------------P---GGEYSY--SG----NSLTVRHT 156 (187)
Q Consensus 105 ~~~~~~~~g~~~~l~C~~~g~p--~p~~~W~~~~~---~--~------------~---~~~~~~--~~----~~l~i~~~ 156 (187)
+....+..|+.++|.|...+.- ...+.||+-.. + + . .++... .. ..|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 3346788999999999875432 34688987431 1 0 0 111111 11 26899999
Q ss_pred CCCCCeEEEEEEec
Q psy15738 157 NRHSAGIYLCVANN 170 (187)
Q Consensus 157 ~~~d~g~y~C~~~n 170 (187)
..+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999998875
No 260
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.33 E-value=0.00068 Score=40.08 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=18.0
Q ss_pred cceeEEEEEecccc-eeEEeeccc
Q psy15738 61 YLSYILAMEKEEEE-RKKKKKRKK 83 (187)
Q Consensus 61 ~~~~~~~v~~~d~g-~y~c~~~~~ 83 (187)
..+|+.+|+.+|.| .|.|.+...
T Consensus 58 GnL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 58 GNLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred ceEEEEEEehhhCCCCeEEEEEcc
Confidence 44459999999999 899966543
No 261
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.32 E-value=0.00099 Score=39.91 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=40.1
Q ss_pred ecCCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcE----EEe-------CcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738 111 KKGYSVTLECKADGNPV--PNITWTRKNNNLPGGEY----SYS-------GNSLTVRHTNRHSAGIYLCVANNMVG 173 (187)
Q Consensus 111 ~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~----~~~-------~~~l~i~~~~~~d~g~y~C~~~n~~g 173 (187)
..+..+.|.|.+.|.-+ ..+.|+++|..+..+.. ... .+.|.+..-...+...|.|.+....-
T Consensus 15 ~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 15 EKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred ccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 35677899999998643 36899999988743311 111 12344433333346799999997643
No 262
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.30 E-value=0.0017 Score=38.12 Aligned_cols=32 Identities=3% Similarity=-0.090 Sum_probs=21.3
Q ss_pred eeEEEEEecccceeEEeec---cceeeEEEEEEEE
Q psy15738 63 SYILAMEKEEEERKKKKKR---KKRKKKKKKKEKR 94 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c~~~---~~~~~~~~~l~v~ 94 (187)
+.|..+..+|+|.|.|.+. .......++|+|.
T Consensus 55 L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~ 89 (91)
T cd05871 55 LLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVI 89 (91)
T ss_pred EEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEe
Confidence 3388999999999999443 2223345566554
No 263
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.29 E-value=0.0014 Score=39.61 Aligned_cols=43 Identities=9% Similarity=0.000 Sum_probs=30.1
Q ss_pred eeeccEEEeeccccccceeEEEEEecccceeEEeecc---ceeeEEEEEE
Q psy15738 46 ITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK---KRKKKKKKKE 92 (187)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~ 92 (187)
.|++|..+..++++. |.+++.+|.|.|+|.... .....++.|.
T Consensus 59 ~~~gR~~~~~ngSL~----I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 59 AYSGRETIYPNGSLL----IQNVTQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred ccCCcEEEeCCCcEE----EecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 456788888777666 999999999999993322 3344444443
No 264
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.28 E-value=0.0011 Score=39.78 Aligned_cols=63 Identities=19% Similarity=0.370 Sum_probs=38.6
Q ss_pred ecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcE-----E---------EeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738 111 KKGYSVTLECKADGNPVP--NITWTRKNNNLPGGEY-----S---------YSGNSLTVRHTNRHSAGIYLCVANNMVG 173 (187)
Q Consensus 111 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~-----~---------~~~~~l~i~~~~~~d~g~y~C~~~n~~g 173 (187)
..+..++|.|.+.|..++ .+.|+++|..+..... . ...+.|.+..-...+...|.|.+.....
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 346789999999997554 4699999987543210 0 0112343322222345689999997543
No 265
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.27 E-value=0.0023 Score=39.29 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=40.7
Q ss_pred cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcE------------EEeCcEEEEecCCCCC-CeEEEEEEecCCCCc
Q psy15738 112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEY------------SYSGNSLTVRHTNRHS-AGIYLCVANNMVGSS 175 (187)
Q Consensus 112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~------------~~~~~~l~i~~~~~~d-~g~y~C~~~n~~g~~ 175 (187)
.+..+.|.|.+.|.-++ .+.|++|+..+..+.. ....+.|.+......+ ...|.|.+.......
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~ 95 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTD 95 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCcc
Confidence 45678999999997444 6899999987653321 0112344444333323 569999999765444
No 266
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.27 E-value=0.0036 Score=37.41 Aligned_cols=48 Identities=8% Similarity=-0.121 Sum_probs=32.5
Q ss_pred eeccEEEeeccccccceeEEEEEecccceeEE-ee--ccceeeEEEEEEEE
Q psy15738 47 TSCSYIILATSLLHYLSYILAMEKEEEERKKK-KK--RKKRKKKKKKKEKR 94 (187)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c-~~--~~~~~~~~~~l~v~ 94 (187)
+..|..+......+..+.|.+++.+|.|.|.| .. ..+..+.++.|+|+
T Consensus 49 f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 49 YRERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTVY 99 (99)
T ss_pred ccCcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence 44566555434455666689999999999999 22 24456677777763
No 267
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.26 E-value=0.00077 Score=39.92 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=17.4
Q ss_pred ceeEEEEEecccceeEEeeccc
Q psy15738 62 LSYILAMEKEEEERKKKKKRKK 83 (187)
Q Consensus 62 ~~~~~~v~~~d~g~y~c~~~~~ 83 (187)
.+|+.+|+.+|.|.|.|.+...
T Consensus 61 ~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 61 NLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred cEEEeecCHhhCceeEEEEEec
Confidence 4448999999999999966544
No 268
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.25 E-value=0.0011 Score=38.80 Aligned_cols=28 Identities=21% Similarity=0.114 Sum_probs=20.5
Q ss_pred eeccEEEeeccccccceeEEEEEecccceeEE
Q psy15738 47 TSCSYIILATSLLHYLSYILAMEKEEEERKKK 78 (187)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c 78 (187)
+..+..+..+..+. |..++.+|+|.|+|
T Consensus 47 ~~~R~~~~~~~sL~----I~~l~~~DsG~Y~c 74 (92)
T cd05741 47 YSGRETIYPNGSLL----IQNLTKEDSGTYTL 74 (92)
T ss_pred cCCeEEEcCCceEE----EccCCchhcEEEEE
Confidence 34555555543444 99999999999999
No 269
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.25 E-value=0.0056 Score=37.47 Aligned_cols=47 Identities=2% Similarity=-0.189 Sum_probs=28.6
Q ss_pred eeccEEEeec--cccccceeEEEEEecccceeEEeecccee--eEEEEEEE
Q psy15738 47 TSCSYIILAT--SLLHYLSYILAMEKEEEERKKKKKRKKRK--KKKKKKEK 93 (187)
Q Consensus 47 ~~~~~~~~~~--~~~~~~~~~~~v~~~d~g~y~c~~~~~~~--~~~~~l~v 93 (187)
|..|+.+... ........|.+++.+|.|.|+|....+.. +..+.|.|
T Consensus 58 f~~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v 108 (112)
T cd05900 58 YLDRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQV 108 (112)
T ss_pred ccCeEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEE
Confidence 3345555431 22345566899999999999995544433 34444444
No 270
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.24 E-value=0.0022 Score=36.78 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=15.7
Q ss_pred CCCCCeeEEEEcCeeeee
Q psy15738 3 ADSRPESTFWIFGKPITR 20 (187)
Q Consensus 3 ~~p~p~i~w~~~g~~l~~ 20 (187)
++|.++|.||++|+++..
T Consensus 11 SkP~A~I~W~k~~~~l~~ 28 (82)
T cd05883 11 SKPAATIRWFKGNKELTG 28 (82)
T ss_pred CCCCCEEEEEECCEECcC
Confidence 689999999999998853
No 271
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.21 E-value=0.0043 Score=36.72 Aligned_cols=62 Identities=11% Similarity=0.164 Sum_probs=37.5
Q ss_pred CcEEEEeEec-cCCCCcEEEEeCCeeCCCCcE-------EEeCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738 114 YSVTLECKAD-GNPVPNITWTRKNNNLPGGEY-------SYSGNSLTVRHTNRHSAGIYLCVANNMVGSS 175 (187)
Q Consensus 114 ~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 175 (187)
....+.|.+. |.|.+.|+|+++......... ....+.|.+......|...|.|.+.+..-..
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~ 85 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQE 85 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 3457889875 678999999987321110000 1112345554444445669999999986443
No 272
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=97.19 E-value=0.0006 Score=39.12 Aligned_cols=18 Identities=28% Similarity=0.658 Sum_probs=12.8
Q ss_pred CCCCCC-eeEEEEcCeeee
Q psy15738 2 FADSRP-ESTFWIFGKPIT 19 (187)
Q Consensus 2 ~~~p~p-~i~w~~~g~~l~ 19 (187)
.++|.| +|+|++||+++.
T Consensus 23 ~G~P~P~~I~W~k~g~~l~ 41 (81)
T cd05749 23 VGPPEPVEILWWQGGSPLG 41 (81)
T ss_pred eeecCCeEEEEEECCEECC
Confidence 357777 688888877663
No 273
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.18 E-value=0.0047 Score=36.54 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=39.4
Q ss_pred ecCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcE----EE-eCcE---EEEecCCCCCCeEEEEEEecCCC
Q psy15738 111 KKGYSVTLECKADGNPVP--NITWTRKNNNLPGGEY----SY-SGNS---LTVRHTNRHSAGIYLCVANNMVG 173 (187)
Q Consensus 111 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~----~~-~~~~---l~i~~~~~~d~g~y~C~~~n~~g 173 (187)
..++...|.|.+.|.-++ .+.|+++|..+..... .. ..++ ...-.+...+...|.|.+.....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l 84 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSL 84 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 357889999999997444 5799999987644311 00 1111 11112334456799999997654
No 274
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.17 E-value=0.0028 Score=36.62 Aligned_cols=32 Identities=9% Similarity=-0.030 Sum_probs=22.8
Q ss_pred eeEEEEEecccceeEEeecc----ceeeEEEEEEEE
Q psy15738 63 SYILAMEKEEEERKKKKKRK----KRKKKKKKKEKR 94 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c~~~~----~~~~~~~~l~v~ 94 (187)
+.|..++.+|+|.|.|.+.. ...+.++.|+|.
T Consensus 48 L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 48 LTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred EEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence 34788889999999995542 245666777664
No 275
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.15 E-value=0.0065 Score=35.84 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=38.6
Q ss_pred cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEEE-----eCcEEE---EecCCCCCCeEEEEEEecCC
Q psy15738 112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYSY-----SGNSLT---VRHTNRHSAGIYLCVANNMV 172 (187)
Q Consensus 112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~-----~~~~l~---i~~~~~~d~g~y~C~~~n~~ 172 (187)
.|....|.|.+.|.-++ .+.|.+||..+. +.... ..++.. ...+...+...|.|.+....
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 45667899999997554 579999998875 32211 112211 12344566778999999753
No 276
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.14 E-value=0.0062 Score=36.00 Aligned_cols=58 Identities=24% Similarity=0.357 Sum_probs=37.7
Q ss_pred cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE----E-------eCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738 112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS----Y-------SGNSLTVRHTNRHSAGIYLCVANNMV 172 (187)
Q Consensus 112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~----~-------~~~~l~i~~~~~~d~g~y~C~~~n~~ 172 (187)
.++...|.|.+.|..+. .+.|.++|..+..+... . ....|.+. ..+...|.|.+....
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence 35567999999997444 57999999886543211 0 11234443 345669999998753
No 277
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.13 E-value=0.0035 Score=37.05 Aligned_cols=63 Identities=16% Similarity=0.238 Sum_probs=39.4
Q ss_pred cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE----E-------eCcEEEEecCCCCCCeEEEEEEecCCCC
Q psy15738 112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS----Y-------SGNSLTVRHTNRHSAGIYLCVANNMVGS 174 (187)
Q Consensus 112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~----~-------~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 174 (187)
..+.+.|.|.+.|.-++ .+.|+++|..+...... . ..+.|.+..-...+...|.|.+......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 44668999999996443 68999999876322110 0 1233444433333567999999876443
No 278
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.13 E-value=0.0033 Score=38.35 Aligned_cols=48 Identities=4% Similarity=-0.144 Sum_probs=31.0
Q ss_pred eeccEEEee--ccccccceeEEEEEecccceeEEeec--cceeeEEEEEEEE
Q psy15738 47 TSCSYIILA--TSLLHYLSYILAMEKEEEERKKKKKR--KKRKKKKKKKEKR 94 (187)
Q Consensus 47 ~~~~~~~~~--~~~~~~~~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~ 94 (187)
|.+|+.+.. .......+.|.+++.+|.|.|.|... ......++.|.|.
T Consensus 56 f~gR~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 56 YQGRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred ccCeEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 344555432 12233445589999999999999433 3456677777775
No 279
>PHA02633 hypothetical protein; Provisional
Probab=97.09 E-value=0.0025 Score=33.99 Aligned_cols=37 Identities=22% Similarity=0.462 Sum_probs=29.6
Q ss_pred CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738 148 GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185 (187)
Q Consensus 148 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 185 (187)
...|.|-++..+|+|.|.|...|..--. ..++.|.|.
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~-~~si~l~V~ 53 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSD-MMKFDLCIC 53 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeE-EEEEEEEEe
Confidence 4678999999999999999999865444 467777764
No 280
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.09 E-value=0.0057 Score=40.48 Aligned_cols=49 Identities=10% Similarity=-0.096 Sum_probs=34.6
Q ss_pred ccEEEeeccccccceeEEEEEecccceeEEee-c--cc-eeeEEEEEEEEcCC
Q psy15738 49 CSYIILATSLLHYLSYILAMEKEEEERKKKKK-R--KK-RKKKKKKKEKRIPP 97 (187)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~-~--~~-~~~~~~~l~v~~~p 97 (187)
.++.++..+.......|.+|+.+|.|.|.|.- . .+ .++.+..|+|..+.
T Consensus 73 ~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 73 NKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred CeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEchh
Confidence 45555454555667779999999999999922 2 23 67788888887544
No 281
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.08 E-value=0.0029 Score=38.19 Aligned_cols=47 Identities=11% Similarity=-0.050 Sum_probs=28.3
Q ss_pred eccEEEeeccccccceeEEEEEecccceeEEeec--cceeeEEEEEEEE
Q psy15738 48 SCSYIILATSLLHYLSYILAMEKEEEERKKKKKR--KKRKKKKKKKEKR 94 (187)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~ 94 (187)
..++.+......+..+.|..++.+|.|.|.|... .......+.|.|.
T Consensus 55 ~~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 55 QGRVFLRRAHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred cCcEEecCCCCCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence 3455543322334456689999999999999443 3334445555554
No 282
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.07 E-value=0.0062 Score=37.13 Aligned_cols=49 Identities=2% Similarity=-0.122 Sum_probs=32.5
Q ss_pred eeeccEEEeecc--ccccceeEEEEEecccceeEEee--ccceeeEEEEEEEE
Q psy15738 46 ITSCSYIILATS--LLHYLSYILAMEKEEEERKKKKK--RKKRKKKKKKKEKR 94 (187)
Q Consensus 46 ~~~~~~~~~~~~--~~~~~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v~ 94 (187)
-|.+|..+.... .....+.|.+++.+|+|.|+|.. ........+.|.|.
T Consensus 55 ~y~gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 55 AFQGRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred hcccEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 456677665432 23455668899999999999933 33445666677664
No 283
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.05 E-value=0.0029 Score=36.01 Aligned_cols=28 Identities=11% Similarity=0.050 Sum_probs=22.1
Q ss_pred EEEEEecccceeEEeeccceeeEEEEEEE
Q psy15738 65 ILAMEKEEEERKKKKKRKKRKKKKKKKEK 93 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~~~~~~~~~~l~v 93 (187)
+..+ .+|+|.|+|.+.....+..+.|+|
T Consensus 51 i~~~-~~dsG~Y~C~a~~~~~S~~v~l~V 78 (78)
T cd05752 51 IRAA-NNDSGEYRCQTQGSSLSDPVHLEV 78 (78)
T ss_pred Eeec-ccCCEEeEEECCCCcCCCCEEEeC
Confidence 5667 889999999887777777777764
No 284
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.02 E-value=0.011 Score=34.86 Aligned_cols=31 Identities=13% Similarity=-0.028 Sum_probs=20.3
Q ss_pred ceeEEEEEecccceeEEeecc-ceeeEEEEEE
Q psy15738 62 LSYILAMEKEEEERKKKKKRK-KRKKKKKKKE 92 (187)
Q Consensus 62 ~~~~~~v~~~d~g~y~c~~~~-~~~~~~~~l~ 92 (187)
.+.|..++.+|+|.|+|.... ...+..+.|+
T Consensus 63 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~ 94 (95)
T cd05717 63 SISISNVSLSDEGRYTCSLYTMPVQTAKATVT 94 (95)
T ss_pred EEEEccCCcccCEEEEEEEecCCCceEEEEEE
Confidence 445889999999999994332 2234444444
No 285
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.00 E-value=0.0031 Score=35.76 Aligned_cols=19 Identities=32% Similarity=0.606 Sum_probs=17.2
Q ss_pred cEEEEecCCCCCCeEEEEE
Q psy15738 149 NSLTVRHTNRHSAGIYLCV 167 (187)
Q Consensus 149 ~~l~i~~~~~~d~g~y~C~ 167 (187)
..|.|.+++.+|+|.|.|.
T Consensus 62 ~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 62 VSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred EEEEEcCCCHHHCEEEEEc
Confidence 4699999999999999995
No 286
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.00 E-value=0.0057 Score=35.16 Aligned_cols=59 Identities=29% Similarity=0.378 Sum_probs=39.9
Q ss_pred cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE---E--------eCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738 112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS---Y--------SGNSLTVRHTNRHSAGIYLCVANNMVG 173 (187)
Q Consensus 112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~---~--------~~~~l~i~~~~~~d~g~y~C~~~n~~g 173 (187)
.+..+.|.|.+.+..+. .+.|++++..+...... . ..+.|.+. ..+...|.|.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 37889999999987444 58899999876544321 1 11334444 4456689999987654
No 287
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=97.00 E-value=0.005 Score=36.46 Aligned_cols=31 Identities=10% Similarity=0.007 Sum_probs=21.9
Q ss_pred eccEEEeeccccccceeEEEEEecccceeEE
Q psy15738 48 SCSYIILATSLLHYLSYILAMEKEEEERKKK 78 (187)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c 78 (187)
+.|+.....+.......|..++.+|+|.|+|
T Consensus 49 d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~C 79 (95)
T cd05881 49 DSRFQLVNFSSNELRVSLSNVSLSDEGRYFC 79 (95)
T ss_pred CcCEEEEeCCCCEEEEEECcCCcccCEEEEE
Confidence 4555555423344556688999999999999
No 288
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.97 E-value=0.0065 Score=36.08 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=38.0
Q ss_pred EecCCcEEEEeEeccC-CCC--cEEEEeCCeeCCCC----cE------EEeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738 110 VKKGYSVTLECKADGN-PVP--NITWTRKNNNLPGG----EY------SYSGNSLTVRHTNRHSAGIYLCVANNMVG 173 (187)
Q Consensus 110 ~~~g~~~~l~C~~~g~-p~p--~~~W~~~~~~~~~~----~~------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 173 (187)
+..++.++|.|.+.|. -++ .++|.+++...... .. ....+.|.+..-...+.-.|.|.+....-
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 4557889999999998 444 57999987432110 00 01113344433222234589999998653
No 289
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=96.92 E-value=0.013 Score=34.83 Aligned_cols=34 Identities=6% Similarity=-0.177 Sum_probs=23.3
Q ss_pred ccceeEEEEEecccceeEEee--ccceeeEEEEEEE
Q psy15738 60 HYLSYILAMEKEEEERKKKKK--RKKRKKKKKKKEK 93 (187)
Q Consensus 60 ~~~~~~~~v~~~d~g~y~c~~--~~~~~~~~~~l~v 93 (187)
.....|..++.+|+|.|+|.. ........+.|.|
T Consensus 64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 64 SVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred cEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 345668999999999999933 3333455555554
No 290
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=96.88 E-value=0.0073 Score=36.46 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=25.0
Q ss_pred cccceeEEEEEecccceeEEeec--cceeeEEEEEEEE
Q psy15738 59 LHYLSYILAMEKEEEERKKKKKR--KKRKKKKKKKEKR 94 (187)
Q Consensus 59 ~~~~~~~~~v~~~d~g~y~c~~~--~~~~~~~~~l~v~ 94 (187)
....+.|.+++.+|.|.|+|... .......+.|.|.
T Consensus 66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence 44555689999999999999333 2344566666664
No 291
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=96.87 E-value=0.0094 Score=35.38 Aligned_cols=45 Identities=16% Similarity=-0.110 Sum_probs=28.2
Q ss_pred ccEEEeeccccccceeEEEEEecccceeEEe---eccceeeEEEEEEE
Q psy15738 49 CSYIILATSLLHYLSYILAMEKEEEERKKKK---KRKKRKKKKKKKEK 93 (187)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~---~~~~~~~~~~~l~v 93 (187)
.+..+...+.....+.|.+++.+|.|.|.|. ...+..+..+.|+|
T Consensus 49 ~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 49 RRRSITSLGLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred CeEEEcCCCCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 3433333333445566899999999999992 33444555666655
No 292
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=96.80 E-value=0.0058 Score=35.06 Aligned_cols=17 Identities=6% Similarity=0.104 Sum_probs=14.3
Q ss_pred CCCCCeeEEEEcCeeee
Q psy15738 3 ADSRPESTFWIFGKPIT 19 (187)
Q Consensus 3 ~~p~p~i~w~~~g~~l~ 19 (187)
++|.++|+|+++|+++.
T Consensus 11 ~~P~~~v~W~~~~~~l~ 27 (82)
T cd05761 11 SKPAATIRWFKGDKELK 27 (82)
T ss_pred cCcCCeEEEEECCEEcc
Confidence 36889999999999875
No 293
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=96.75 E-value=0.0082 Score=35.99 Aligned_cols=31 Identities=10% Similarity=-0.109 Sum_probs=22.1
Q ss_pred cceeEEEEEecccceeEEeeccceeeEEEEE
Q psy15738 61 YLSYILAMEKEEEERKKKKKRKKRKKKKKKK 91 (187)
Q Consensus 61 ~~~~~~~v~~~d~g~y~c~~~~~~~~~~~~l 91 (187)
....+..+..+|.|.|+|..+....-....+
T Consensus 70 ~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i 100 (104)
T cd05896 70 DSIWFRPAELQDSGLYTCVLRNSTYCMKVSM 100 (104)
T ss_pred CEEEEEeCChhhCeEEEEEECCCCcceEEEE
Confidence 4445899999999999997776554444443
No 294
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=96.69 E-value=0.012 Score=35.18 Aligned_cols=29 Identities=3% Similarity=-0.106 Sum_probs=20.4
Q ss_pred EEEEEecccceeEEeeccceeeEEEEEEE
Q psy15738 65 ILAMEKEEEERKKKKKRKKRKKKKKKKEK 93 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~~~~~~~~~~l~v 93 (187)
+.+++.+|.|.|+|.+.....+..+.+.+
T Consensus 69 L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l 97 (101)
T cd05860 69 LTRLKGTEGGTYTFLVSNSDASASVTFNV 97 (101)
T ss_pred EeecChhhCcEEEEEEECCCCeEEEEEEE
Confidence 77888999999999665555555444443
No 295
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.68 E-value=0.047 Score=32.41 Aligned_cols=67 Identities=16% Similarity=0.291 Sum_probs=42.4
Q ss_pred eEEEecCCcEEE-EeEe-ccCCCCcEEEEeCCeeCCCC-------cEEEeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738 107 KVEVKKGYSVTL-ECKA-DGNPVPNITWTRKNNNLPGG-------EYSYSGNSLTVRHTNRHSAGIYLCVANNMVG 173 (187)
Q Consensus 107 ~~~~~~g~~~~l-~C~~-~g~p~p~~~W~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 173 (187)
...+.+|..+.+ .|.+ .|.|++.|+|+.+..-.... ....-.+.+.+......|.-.+.|.+....-
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 355677888887 8886 67799999999763211110 0111224455554445566799999998754
No 296
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=96.68 E-value=0.019 Score=35.38 Aligned_cols=49 Identities=2% Similarity=-0.119 Sum_probs=31.6
Q ss_pred eeeccEEEeecc--ccccceeEEEEEecccceeEEe--eccceeeEEEEEEEE
Q psy15738 46 ITSCSYIILATS--LLHYLSYILAMEKEEEERKKKK--KRKKRKKKKKKKEKR 94 (187)
Q Consensus 46 ~~~~~~~~~~~~--~~~~~~~~~~v~~~d~g~y~c~--~~~~~~~~~~~l~v~ 94 (187)
-|.+|..+.... .......|.+++.+|.|.|+|. ........++.|.|.
T Consensus 62 ~y~gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 62 EYMGRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred cccCcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 455666665322 2345555889999999999993 334445566666664
No 297
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=96.68 E-value=0.0055 Score=36.36 Aligned_cols=47 Identities=9% Similarity=-0.172 Sum_probs=30.4
Q ss_pred eeccEEEeeccccccceeEEEEEecccceeEE-eeccceeeEEEEEEE
Q psy15738 47 TSCSYIILATSLLHYLSYILAMEKEEEERKKK-KKRKKRKKKKKKKEK 93 (187)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c-~~~~~~~~~~~~l~v 93 (187)
|..|.........+..+.+.+|+.+|.|.|+| .......+....+.|
T Consensus 46 y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 46 YRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred ccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 44555554433455677789999999999999 444444445554444
No 298
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=96.66 E-value=0.0098 Score=34.24 Aligned_cols=17 Identities=0% Similarity=-0.009 Sum_probs=14.4
Q ss_pred CCCCCeeEEEEcCeeee
Q psy15738 3 ADSRPESTFWIFGKPIT 19 (187)
Q Consensus 3 ~~p~p~i~w~~~g~~l~ 19 (187)
++|.++|+|++||++|.
T Consensus 11 ~~P~~~ItW~k~g~~l~ 27 (83)
T cd07705 11 SKPAANIKWRKGDQELE 27 (83)
T ss_pred ccCCCEeEEEECCEECC
Confidence 46888999999998875
No 299
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=96.61 E-value=0.0069 Score=32.04 Aligned_cols=17 Identities=12% Similarity=0.048 Sum_probs=13.4
Q ss_pred EEEEEecccceeEEeec
Q psy15738 65 ILAMEKEEEERKKKKKR 81 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~ 81 (187)
+..+...|.|.|+|...
T Consensus 43 i~~~~~~d~G~Y~C~~~ 59 (63)
T smart00408 43 IKSVSLEDSGEYTCVAE 59 (63)
T ss_pred EeeCCcccCEEEEEEEe
Confidence 67788889999999544
No 300
>PHA03376 BARF1; Provisional
Probab=96.60 E-value=0.017 Score=38.36 Aligned_cols=66 Identities=23% Similarity=0.210 Sum_probs=43.9
Q ss_pred eEEEecCCcEEEEeEecc---CCCCcEEEEeCCe----eC---CCC-----------cEEE----eCcEEEEecCCCCCC
Q psy15738 107 KVEVKKGYSVTLECKADG---NPVPNITWTRKNN----NL---PGG-----------EYSY----SGNSLTVRHTNRHSA 161 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g---~p~p~~~W~~~~~----~~---~~~-----------~~~~----~~~~l~i~~~~~~d~ 161 (187)
......|+.+.|.|.-.- .+..+|.|++.+. .+ ... .... .+-+|.|.++..+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 356678999999998652 2344789999532 10 000 0011 123689999999999
Q ss_pred eEEEEEEecCC
Q psy15738 162 GIYLCVANNMV 172 (187)
Q Consensus 162 g~y~C~~~n~~ 172 (187)
|.|.|......
T Consensus 100 GtY~C~fQkge 110 (221)
T PHA03376 100 GNYLCRMKLGE 110 (221)
T ss_pred ceEEEEEEcCC
Confidence 99999998643
No 301
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=96.52 E-value=0.0099 Score=35.32 Aligned_cols=31 Identities=10% Similarity=-0.022 Sum_probs=21.5
Q ss_pred eeEEEEEecccceeEEee---ccceeeEEEEEEE
Q psy15738 63 SYILAMEKEEEERKKKKK---RKKRKKKKKKKEK 93 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c~~---~~~~~~~~~~l~v 93 (187)
..|..++.+|+|.|.|.. .+......+.|.|
T Consensus 63 L~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 63 LQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred EEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 448999999999999922 2444455555555
No 302
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=96.44 E-value=0.0088 Score=35.49 Aligned_cols=47 Identities=9% Similarity=-0.142 Sum_probs=29.1
Q ss_pred eeccEEEeeccccccceeEEEEEecccceeEEe-ec--cceeeEEEEEEE
Q psy15738 47 TSCSYIILATSLLHYLSYILAMEKEEEERKKKK-KR--KKRKKKKKKKEK 93 (187)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~-~~--~~~~~~~~~l~v 93 (187)
|..|..+...+..+..+.|.+++.+|.|.|+|. .. .+..+.+..|+|
T Consensus 46 y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 46 YQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred hCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 344555543344456777899999999999993 33 343444444444
No 303
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.36 E-value=0.072 Score=31.61 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=35.7
Q ss_pred cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE----------EeCcEEEEecCCCCCCeEEEEEEecC
Q psy15738 112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS----------YSGNSLTVRHTNRHSAGIYLCVANNM 171 (187)
Q Consensus 112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~g~y~C~~~n~ 171 (187)
.+..+.|.|.+.|.-++ .+.|.++|..+..+... ...+.|.+..-. ....|.|.+...
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 35678999999997544 57899999876433111 011233333211 234699999974
No 304
>KOG4597|consensus
Probab=96.22 E-value=0.0087 Score=45.04 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=56.6
Q ss_pred EEEecCCcEEEEeEeccCCCCcEEEEeC---Ce--eCCCCc-----EEEeCcEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738 108 VEVKKGYSVTLECKADGNPVPNITWTRK---NN--NLPGGE-----YSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAA 177 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~---~~--~~~~~~-----~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s 177 (187)
..+-.+++..++|.+.|.|.+.|.|.+- .. .+.... .......|.|-+....|+|.|.|.+.+..|...
T Consensus 206 w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~- 284 (560)
T KOG4597|consen 206 WFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR- 284 (560)
T ss_pred hhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceee-
Confidence 4566788999999999999999999652 21 111111 112346789999999999999999999999874
Q ss_pred eeEEEEE
Q psy15738 178 ASIALHV 184 (187)
Q Consensus 178 ~~~~l~v 184 (187)
+.+.+.+
T Consensus 285 rdv~c~s 291 (560)
T KOG4597|consen 285 RDVPCSS 291 (560)
T ss_pred ccceeee
Confidence 7776655
No 305
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=96.22 E-value=0.012 Score=33.84 Aligned_cols=31 Identities=3% Similarity=-0.202 Sum_probs=21.6
Q ss_pred eeEEEEEecccceeEEeeccce---eeEEEEEEE
Q psy15738 63 SYILAMEKEEEERKKKKKRKKR---KKKKKKKEK 93 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c~~~~~~---~~~~~~l~v 93 (187)
..|..++.+|+|.|+|.+.... .+..+.|+|
T Consensus 50 l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 50 LSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred EEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 3478899999999999555433 555555554
No 306
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=96.21 E-value=0.0076 Score=34.74 Aligned_cols=23 Identities=4% Similarity=-0.068 Sum_probs=16.7
Q ss_pred EEEEEecccceeEEeeccceeeE
Q psy15738 65 ILAMEKEEEERKKKKKRKKRKKK 87 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~~~~~~~~ 87 (187)
|..++.+|.|.|.|.+.......
T Consensus 56 I~~v~~~DsG~Y~C~a~n~~g~~ 78 (85)
T cd05754 56 IRNVQLSDAGTYVCTGSNMLDTD 78 (85)
T ss_pred ECCCCHHHCEEEEEEEeccCCeE
Confidence 77888999999999655443333
No 307
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=96.11 E-value=0.028 Score=32.54 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=14.7
Q ss_pred eeEEEEEecccceeEEee
Q psy15738 63 SYILAMEKEEEERKKKKK 80 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c~~ 80 (187)
..|..+...|+|.|.|.+
T Consensus 49 LlI~~~~~~dsG~Y~C~s 66 (85)
T cd05872 49 LLILVTSPEHSGTYRCYS 66 (85)
T ss_pred CEEEECCHhhCEEEEEEE
Confidence 348899999999999943
No 308
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.10 E-value=0.048 Score=32.33 Aligned_cols=63 Identities=19% Similarity=0.374 Sum_probs=40.4
Q ss_pred EecCCcEEEEeEeccC-CC--CcEEEEeCCeeCCCCcEE---------EeCcEEEEecCCCCCCe-EEEEEEecCCC
Q psy15738 110 VKKGYSVTLECKADGN-PV--PNITWTRKNNNLPGGEYS---------YSGNSLTVRHTNRHSAG-IYLCVANNMVG 173 (187)
Q Consensus 110 ~~~g~~~~l~C~~~g~-p~--p~~~W~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~g-~y~C~~~n~~g 173 (187)
+..|..+++.|.+.+. |. ..+.|+++...+...... .....+++.- +++|.| .|.|.|.-.++
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence 4789999999999754 43 468899877554322111 0123444444 477766 99999985443
No 309
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.04 E-value=0.044 Score=32.44 Aligned_cols=60 Identities=25% Similarity=0.393 Sum_probs=36.5
Q ss_pred cCCcEEEEeEeccCCCC--cEEEEeCCeeCCCCcEE----E-------eCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738 112 KGYSVTLECKADGNPVP--NITWTRKNNNLPGGEYS----Y-------SGNSLTVRHTNRHSAGIYLCVANNMV 172 (187)
Q Consensus 112 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~----~-------~~~~l~i~~~~~~d~g~y~C~~~n~~ 172 (187)
.++.+.|.|.+.|.-+. .+.|.++|.. ..+... . ....|.+..........|.|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 35678999999997543 5789999986 322110 1 11234433322223567999999754
No 310
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.02 E-value=0.2 Score=37.65 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=55.3
Q ss_pred eeEEEEEecccceeEEe--e--ccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCC---cEEEEeC
Q psy15738 63 SYILAMEKEEEERKKKK--K--RKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP---NITWTRK 135 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c~--~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~~~W~~~ 135 (187)
..|..++....|.|+=. + ......+.+++..+.+|.+.... ..+.+|+...-.|.+..+.++ .+.|+.|
T Consensus 184 L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~----~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n 259 (466)
T PHA03270 184 LVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP----HAVLEGEPFGATCVAANYYPGDRAAFRWFEG 259 (466)
T ss_pred EEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC----CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 44888888889999552 2 33455567888888888875333 346789999999999877544 5889999
Q ss_pred CeeCCC
Q psy15738 136 NNNLPG 141 (187)
Q Consensus 136 ~~~~~~ 141 (187)
+..+..
T Consensus 260 g~~V~~ 265 (466)
T PHA03270 260 GDEVFA 265 (466)
T ss_pred CccccC
Confidence 987754
No 311
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=95.98 E-value=0.02 Score=33.83 Aligned_cols=45 Identities=16% Similarity=0.021 Sum_probs=27.7
Q ss_pred ccEEEeeccccccceeEEEEEecccceeEEee---ccceeeEEEEEEE
Q psy15738 49 CSYIILATSLLHYLSYILAMEKEEEERKKKKK---RKKRKKKKKKKEK 93 (187)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~---~~~~~~~~~~l~v 93 (187)
.+..+......+....|..++.+|.|.|.|.. ..+.......|.|
T Consensus 50 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 50 GRVSFLNSSLEDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred ceEEEeCCCCCceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence 44443332223445568999999999999932 3345555555555
No 312
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=95.95 E-value=0.069 Score=29.85 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=32.5
Q ss_pred ceEEccCCCCeeEEEeC-eEeeeccEEEeeccccccceeEEEEEecccceeEEeecc---ceeeEEEEEEE
Q psy15738 27 AIMFADSRPESTFWIFG-KLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRK---KRKKKKKKKEK 93 (187)
Q Consensus 27 ~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~---~~~~~~~~l~v 93 (187)
.|.+.........|..+ ..+.... +. .++..+..+|.|.|+|.... ...+..+.|+|
T Consensus 20 ~C~~~~~p~~~~~w~~~~~~~~~~~------~~----~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 20 TCSVSGNPPPQVQWYKNGSPINSSQ------NG----LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEEEESSSSSEEEEEETTEEEEEES------SE----EEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEcccceeeeeeeeeeeeeeee------ee----eeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 46666555566777655 3333111 11 34667889999999995443 33445555544
No 313
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=95.91 E-value=0.13 Score=28.74 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=28.2
Q ss_pred eEEccCCCCeeEEEe--CeEee-eccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738 28 IMFADSRPESTFWIF--GKLIT-SCSYIILATSLLHYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 28 ~~~~~~~~~~~~w~~--~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
|.+.........|+. ++.+. ..++....... .....+..+...|.|.|.|...
T Consensus 16 C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~ 71 (86)
T smart00410 16 CEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAAT 71 (86)
T ss_pred EEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEE
Confidence 444444444555553 23332 23333333221 2344478899999999999444
No 314
>smart00409 IG Immunoglobulin.
Probab=95.91 E-value=0.13 Score=28.74 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=28.2
Q ss_pred eEEccCCCCeeEEEe--CeEee-eccEEEeeccccccceeEEEEEecccceeEEeec
Q psy15738 28 IMFADSRPESTFWIF--GKLIT-SCSYIILATSLLHYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 28 ~~~~~~~~~~~~w~~--~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
|.+.........|+. ++.+. ..++....... .....+..+...|.|.|.|...
T Consensus 16 C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~ 71 (86)
T smart00409 16 CEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAAT 71 (86)
T ss_pred EEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEE
Confidence 444444444555553 23332 23333333221 2344478899999999999444
No 315
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=95.87 E-value=0.035 Score=32.79 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=17.7
Q ss_pred cceeEEEEEecccceeEEeeccc
Q psy15738 61 YLSYILAMEKEEEERKKKKKRKK 83 (187)
Q Consensus 61 ~~~~~~~v~~~d~g~y~c~~~~~ 83 (187)
....|..++.+|+|.|.|.....
T Consensus 65 ~~L~I~~l~~sDsgtY~C~v~~~ 87 (94)
T cd07690 65 FPLIIKNLKIEDSDTYICEVEDK 87 (94)
T ss_pred EEEEECCCCHHHCEEEEEEECCc
Confidence 34558899999999999965544
No 316
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.84 E-value=0.048 Score=32.54 Aligned_cols=64 Identities=17% Similarity=0.246 Sum_probs=38.1
Q ss_pred EecCCcEEEEeEeccCC-C--CcEEEEeCCeeCC--CC------cEEEeCcEEEEecCCCCCCeEEEEEEecCCC
Q psy15738 110 VKKGYSVTLECKADGNP-V--PNITWTRKNNNLP--GG------EYSYSGNSLTVRHTNRHSAGIYLCVANNMVG 173 (187)
Q Consensus 110 ~~~g~~~~l~C~~~g~p-~--p~~~W~~~~~~~~--~~------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 173 (187)
+..+..+.|.|.+.+.- + ..+.|.++|..-. .. ......+.|.+..-.......|.|.+.....
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 33577899999999865 3 3689999986410 00 0001123454443223334579999998654
No 317
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=95.84 E-value=0.02 Score=30.78 Aligned_cols=17 Identities=12% Similarity=-0.046 Sum_probs=13.5
Q ss_pred eeEEEEEecccceeEEe
Q psy15738 63 SYILAMEKEEEERKKKK 79 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c~ 79 (187)
..|..++.+|+|.|+|.
T Consensus 47 L~i~~v~~~d~G~Y~C~ 63 (64)
T PF00047_consen 47 LTISNVTPEDSGTYTCV 63 (64)
T ss_dssp EEESSCTGGGTEEEEEE
T ss_pred EEEccCCHHHCEEEEEE
Confidence 34778888899999994
No 318
>PHA02633 hypothetical protein; Provisional
Probab=95.79 E-value=0.033 Score=29.79 Aligned_cols=35 Identities=9% Similarity=-0.170 Sum_probs=23.3
Q ss_pred ccceeEEEEEecccceeEEeecccee--eEEEEEEEE
Q psy15738 60 HYLSYILAMEKEEEERKKKKKRKKRK--KKKKKKEKR 94 (187)
Q Consensus 60 ~~~~~~~~v~~~d~g~y~c~~~~~~~--~~~~~l~v~ 94 (187)
....+++.+..+|+|.|.|.-+...- ..++.|+|.
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 34455999999999999995544433 344455554
No 319
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=95.78 E-value=0.03 Score=33.43 Aligned_cols=35 Identities=6% Similarity=-0.138 Sum_probs=24.4
Q ss_pred cccceeEEEEEecccceeEEe---eccceeeEEEEEEE
Q psy15738 59 LHYLSYILAMEKEEEERKKKK---KRKKRKKKKKKKEK 93 (187)
Q Consensus 59 ~~~~~~~~~v~~~d~g~y~c~---~~~~~~~~~~~l~v 93 (187)
.+..+.|.+++.+|.|.|.|. ...+..+..+.|.|
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 445566899999999999993 23444455556655
No 320
>PHA03269 envelope glycoprotein C; Provisional
Probab=95.72 E-value=0.084 Score=40.18 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=56.2
Q ss_pred cceeEEEEEecccceeEEe-----eccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCC---cEEE
Q psy15738 61 YLSYILAMEKEEEERKKKK-----KRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP---NITW 132 (187)
Q Consensus 61 ~~~~~~~v~~~d~g~y~c~-----~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~~~W 132 (187)
...-|.+++..+.|.|+=. +.....+..+.+.++.+|.+.... ..+.+|+...-.|.+..+.++ .+.|
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p----~PVL~Ge~YkAtC~vA~YYPp~SvrlrW 364 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG----DPVLLGNPYAAYCKVNKYYPPHSVIVKW 364 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC----CccccCCCceEEEEeeeecCCCceEEEE
Confidence 4455889999999988542 223345677888888888664332 346899999999999877544 5889
Q ss_pred EeCCeeCCC
Q psy15738 133 TRKNNNLPG 141 (187)
Q Consensus 133 ~~~~~~~~~ 141 (187)
+.|+..+..
T Consensus 365 f~ng~~V~~ 373 (566)
T PHA03269 365 TSNFGNIGK 373 (566)
T ss_pred EeCCcccCc
Confidence 999887753
No 321
>PHA03271 envelope glycoprotein C; Provisional
Probab=95.66 E-value=0.47 Score=35.67 Aligned_cols=79 Identities=13% Similarity=0.070 Sum_probs=53.7
Q ss_pred cccceeEEEEEecccceeEEeecc----ceeeEEEEEEEE-cCCeeEEecCCceEEEecCCcEEEEeEeccCCCC---cE
Q psy15738 59 LHYLSYILAMEKEEEERKKKKKRK----KRKKKKKKKEKR-IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP---NI 130 (187)
Q Consensus 59 ~~~~~~~~~v~~~d~g~y~c~~~~----~~~~~~~~l~v~-~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~~ 130 (187)
...+.-|.+|+.+|.|.|+...+. ....+.+.+.+. .+|.+.... ..+..|+...-.|.+..+.+| .+
T Consensus 205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a----~PVL~Ge~YkAtC~vAnYYPP~Svrl 280 (490)
T PHA03271 205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA----PPVLSGENYKASCIVRHFYPPGSVYV 280 (490)
T ss_pred ceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC----CccccCCCceEEEEeeeecCCCceEE
Confidence 445556999999999988773332 233445555554 555554332 246789999999999887554 58
Q ss_pred EEEeCCeeCCC
Q psy15738 131 TWTRKNNNLPG 141 (187)
Q Consensus 131 ~W~~~~~~~~~ 141 (187)
.|+.||.+...
T Consensus 281 rWf~nG~~V~~ 291 (490)
T PHA03271 281 SWRQNGNIATP 291 (490)
T ss_pred EEEeCCccccC
Confidence 89999987643
No 322
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.53 E-value=0.12 Score=31.68 Aligned_cols=64 Identities=13% Similarity=0.219 Sum_probs=41.7
Q ss_pred eEEEecCCcEEEEeEeccCCCC---cEEEEeCCeeC----------------CCCcEEE------eCcEEEEecCCCCCC
Q psy15738 107 KVEVKKGYSVTLECKADGNPVP---NITWTRKNNNL----------------PGGEYSY------SGNSLTVRHTNRHSA 161 (187)
Q Consensus 107 ~~~~~~g~~~~l~C~~~g~p~p---~~~W~~~~~~~----------------~~~~~~~------~~~~l~i~~~~~~d~ 161 (187)
...+.+|.+++|.|.+.|.-.. .+.|+|...-. ...+... ..-.|.|.+++.+|+
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT 86 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT 86 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence 3567788899999998765432 47788743210 0001100 113689999999999
Q ss_pred eEEEEEEec
Q psy15738 162 GIYLCVANN 170 (187)
Q Consensus 162 g~y~C~~~n 170 (187)
+.|.|..+.
T Consensus 87 a~Y~Ca~e~ 95 (115)
T cd05721 87 DIYFCKIEL 95 (115)
T ss_pred eEEEEEeee
Confidence 999997654
No 323
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.41 E-value=0.03 Score=34.99 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=39.6
Q ss_pred cCCcEEEEeEeccC-----CCCcEEEEeCCeeC----CCCcEE--------------EeCcEEEEecCCCCCCeEEEEEE
Q psy15738 112 KGYSVTLECKADGN-----PVPNITWTRKNNNL----PGGEYS--------------YSGNSLTVRHTNRHSAGIYLCVA 168 (187)
Q Consensus 112 ~g~~~~l~C~~~g~-----p~p~~~W~~~~~~~----~~~~~~--------------~~~~~l~i~~~~~~d~g~y~C~~ 168 (187)
-.+++.++|.+... +...+.|.+++..+ ...... ....+|.+.....- .|.|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 46889999998652 23358999988753 111111 01234777664433 79999999
Q ss_pred ecCCCCcceeeEEEEE
Q psy15738 169 NNMVGSSAAASIALHV 184 (187)
Q Consensus 169 ~n~~g~~~s~~~~l~v 184 (187)
....... ...+.|..
T Consensus 105 t~~~~eg-e~~i~Lk~ 119 (130)
T PF08204_consen 105 TELSREG-ETTIELKY 119 (130)
T ss_dssp EETTEEE-EEEEEEEE
T ss_pred EecCCCc-eEEEEEEE
Confidence 8765555 35666654
No 324
>PHA03273 envelope glycoprotein C; Provisional
Probab=95.35 E-value=0.39 Score=36.55 Aligned_cols=103 Identities=9% Similarity=0.050 Sum_probs=66.4
Q ss_pred eeEEEEEecccceeEEe--ec--cceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCC---cEEEEeC
Q psy15738 63 SYILAMEKEEEERKKKK--KR--KKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVP---NITWTRK 135 (187)
Q Consensus 63 ~~~~~v~~~d~g~y~c~--~~--~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~~~W~~~ 135 (187)
..|..++..+.|.|+=. +. .......+.+..+.+|.+.... ..+.+|+...-.|.+..+.+| .+.|+.|
T Consensus 200 LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~----~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 200 LTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV----HPSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred eEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC----CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 45888888999999542 22 2334466666668888765332 346899999999999877544 5889999
Q ss_pred CeeCCCCcEEE------------eCcEEEEecCCCCC-CeEEEEEEe
Q psy15738 136 NNNLPGGEYSY------------SGNSLTVRHTNRHS-AGIYLCVAN 169 (187)
Q Consensus 136 ~~~~~~~~~~~------------~~~~l~i~~~~~~d-~g~y~C~~~ 169 (187)
+.++....+.. ..++|.+......+ -=...|.+.
T Consensus 276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~ 322 (486)
T PHA03273 276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE 322 (486)
T ss_pred CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence 99876322210 12345555543322 346788876
No 325
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=95.31 E-value=0.1 Score=32.20 Aligned_cols=20 Identities=5% Similarity=-0.147 Sum_probs=17.2
Q ss_pred cccceeEEEEEecccceeEE
Q psy15738 59 LHYLSYILAMEKEEEERKKK 78 (187)
Q Consensus 59 ~~~~~~~~~v~~~d~g~y~c 78 (187)
.+..+.|.+++.+|.|.|+|
T Consensus 78 ~daSI~I~nv~~sD~G~Y~C 97 (116)
T cd05879 78 KDGSIVIHNLDYTDNGTFTC 97 (116)
T ss_pred CeeEEEEccCCcccCEEEEE
Confidence 44567789999999999999
No 326
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.25 E-value=0.061 Score=32.22 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=31.9
Q ss_pred eCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738 147 SGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185 (187)
Q Consensus 147 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 185 (187)
.+-+|.|+.+...|+|.|.-.+.+..|......+++.|+
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 356899999999999999999999999987777777765
No 327
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=95.23 E-value=0.078 Score=31.06 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=9.7
Q ss_pred CCeeEEEEcCeeee
Q psy15738 6 RPESTFWIFGKPIT 19 (187)
Q Consensus 6 ~p~i~w~~~g~~l~ 19 (187)
.++|+|+++|+++.
T Consensus 29 ~~~i~W~~~g~~~~ 42 (95)
T cd00098 29 DITVTWLKNGKELT 42 (95)
T ss_pred CcEEEEEECCEECC
Confidence 35777877777664
No 328
>PHA03042 CD47-like protein; Provisional
Probab=95.10 E-value=0.13 Score=36.14 Aligned_cols=68 Identities=19% Similarity=0.294 Sum_probs=40.9
Q ss_pred cCCcEEEEeEeccC-----CCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEE
Q psy15738 112 KGYSVTLECKADGN-----PVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIAL 182 (187)
Q Consensus 112 ~g~~~~l~C~~~g~-----p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l 182 (187)
-.+++.++|.+... -.-++.|..++...-..... ...+|.+.... .-.|+|+|.|.+..-... ..+.|
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-n~aSL~~~f~~-~l~GNYTCEv~~l~n~gk-~~IeL 102 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-NTSSLKFNFSK-NLSGNYTCEAINKFNKIK-NTIEL 102 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-cceEEEEeccc-cCCCceeEEEeecccCcc-EEEEE
Confidence 46788999998653 24579999998764211111 12345554333 337999999997544332 34444
No 329
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.02 E-value=0.062 Score=37.60 Aligned_cols=47 Identities=23% Similarity=0.413 Sum_probs=34.9
Q ss_pred CCCcEEEEeCCe-eCCCCcE--EEeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738 126 PVPNITWTRKNN-NLPGGEY--SYSGNSLTVRHTNRHSAGIYLCVANNMV 172 (187)
Q Consensus 126 p~p~~~W~~~~~-~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 172 (187)
..|.+.|...+. .+..... ....+.|.+.+...+++|.|+|......
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 468899987554 3433322 2356889999999999999999988643
No 330
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=94.96 E-value=0.13 Score=29.53 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=14.3
Q ss_pred CCCCCeeEEEEcCeeee
Q psy15738 3 ADSRPESTFWIFGKPIT 19 (187)
Q Consensus 3 ~~p~p~i~w~~~g~~l~ 19 (187)
.+|+.+|+|++||+++.
T Consensus 11 f~P~~~itW~kng~~l~ 27 (83)
T cd05884 11 SKPAADIRWFKNDKEIK 27 (83)
T ss_pred ccCCCEEEEEECCEECc
Confidence 36789999999999875
No 331
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=94.77 E-value=0.051 Score=31.46 Aligned_cols=31 Identities=10% Similarity=-0.109 Sum_probs=20.0
Q ss_pred eEEEEEecccceeEEeecc--ceeeEEEEEEEE
Q psy15738 64 YILAMEKEEEERKKKKKRK--KRKKKKKKKEKR 94 (187)
Q Consensus 64 ~~~~v~~~d~g~y~c~~~~--~~~~~~~~l~v~ 94 (187)
.|..++.+|+|.|+|.+.. ........|.|+
T Consensus 53 ~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~ 85 (86)
T cd05862 53 TIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH 85 (86)
T ss_pred EEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence 3778889999999995543 333344444443
No 332
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=94.32 E-value=0.36 Score=29.64 Aligned_cols=19 Identities=5% Similarity=-0.015 Sum_probs=16.2
Q ss_pred ccceeEEEEEecccceeEE
Q psy15738 60 HYLSYILAMEKEEEERKKK 78 (187)
Q Consensus 60 ~~~~~~~~v~~~d~g~y~c 78 (187)
...+.|..++.+|.|.|.|
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C 96 (115)
T cd05880 78 DASILIWQLQPTDNGTYTC 96 (115)
T ss_pred ceEEEEeeCChhhCEEEEE
Confidence 3446689999999999999
No 333
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=94.19 E-value=0.15 Score=31.17 Aligned_cols=32 Identities=13% Similarity=-0.093 Sum_probs=20.7
Q ss_pred ccEEEeeccc-cccceeEEEEEecccceeEEee
Q psy15738 49 CSYIILATSL-LHYLSYILAMEKEEEERKKKKK 80 (187)
Q Consensus 49 ~~~~~~~~~~-~~~~~~~~~v~~~d~g~y~c~~ 80 (187)
.++.+..... ......|..++.+|+|.|.|..
T Consensus 64 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~ 96 (116)
T cd04982 64 NKFEARKDVGKSTSTLTIQNLEKEDSATYYCAY 96 (116)
T ss_pred CCEEEEEECCCCEEEEEEEECCHHHCEEEEEEE
Confidence 4554443332 2334458899999999999943
No 334
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=94.14 E-value=0.17 Score=30.65 Aligned_cols=21 Identities=14% Similarity=-0.075 Sum_probs=16.4
Q ss_pred ccceeEEEEEecccceeEEee
Q psy15738 60 HYLSYILAMEKEEEERKKKKK 80 (187)
Q Consensus 60 ~~~~~~~~v~~~d~g~y~c~~ 80 (187)
.....|..++.+|+|.|.|..
T Consensus 71 ~~~L~I~~~~~~Dsg~Y~Ca~ 91 (110)
T cd05899 71 RSSLTIKSAEPEDSAVYLCAS 91 (110)
T ss_pred ccEEEECCCChhhCEEEEEEe
Confidence 344558899999999999943
No 335
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=93.87 E-value=0.59 Score=26.12 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=11.6
Q ss_pred CCCeeEEEEcCeeee
Q psy15738 5 SRPESTFWIFGKPIT 19 (187)
Q Consensus 5 p~p~i~w~~~g~~l~ 19 (187)
+..+|+|++||+++.
T Consensus 14 ~~i~v~W~k~g~~~~ 28 (75)
T smart00407 14 PDITVTWLRNGQEVT 28 (75)
T ss_pred CCCEEEEEECCEECC
Confidence 346899999999753
No 336
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=93.80 E-value=0.5 Score=29.67 Aligned_cols=35 Identities=11% Similarity=-0.006 Sum_probs=18.9
Q ss_pred cccceeEEEEEeccc--ceeEEeeccc--eeeEEEEEEE
Q psy15738 59 LHYLSYILAMEKEEE--ERKKKKKRKK--RKKKKKKKEK 93 (187)
Q Consensus 59 ~~~~~~~~~v~~~d~--g~y~c~~~~~--~~~~~~~l~v 93 (187)
+..|...+.++..|. |.|+|..... ..+..+.|..
T Consensus 81 l~kG~aSL~~~~~~a~~GnYTCeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 81 LLKGNASLKMDKSDAVEGNYTCEVTELSREGETTIELKY 119 (130)
T ss_dssp GGGTB--EEEEHHHHH-EEEEEEEEETTEEEEEEEEEEE
T ss_pred hhCCCEEEEEcchhccccceEEEEEecCCCceEEEEEEE
Confidence 445555666666664 9999955433 3334444444
No 337
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=93.61 E-value=0.17 Score=27.73 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=12.7
Q ss_pred EEEEEecccceeEEee
Q psy15738 65 ILAMEKEEEERKKKKK 80 (187)
Q Consensus 65 ~~~v~~~d~g~y~c~~ 80 (187)
+..+..+|.|.|+|.+
T Consensus 58 i~~v~~~~~g~y~C~a 73 (75)
T PF13927_consen 58 ISNVTRSDNGTYTCIA 73 (75)
T ss_dssp ESSCCGGGTEEEEEEE
T ss_pred EccCCHHhCcEEEEEE
Confidence 4567789999999955
No 338
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=93.25 E-value=0.42 Score=27.55 Aligned_cols=16 Identities=25% Similarity=0.613 Sum_probs=11.5
Q ss_pred CCCCCeeEEEEcCeee
Q psy15738 3 ADSRPESTFWIFGKPI 18 (187)
Q Consensus 3 ~~p~p~i~w~~~g~~l 18 (187)
++|+|+|+|+.+|.++
T Consensus 26 ~~P~~~i~W~~~~~~~ 41 (89)
T PF08205_consen 26 GYPPPQITWYLDGGPV 41 (89)
T ss_dssp EBS-EEEEEEETTCEE
T ss_pred eECCeEEEEEECCCce
Confidence 4678888888887766
No 339
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=93.15 E-value=0.66 Score=27.65 Aligned_cols=25 Identities=4% Similarity=-0.042 Sum_probs=15.2
Q ss_pred EEEEEecc-cceeEEeeccceeeEEE
Q psy15738 65 ILAMEKEE-EERKKKKKRKKRKKKKK 89 (187)
Q Consensus 65 ~~~v~~~d-~g~y~c~~~~~~~~~~~ 89 (187)
|..+...| .|.|.|.+.....+...
T Consensus 68 I~~~~~~d~~g~Y~C~a~N~~G~d~~ 93 (98)
T cd05898 68 INNIMEADFQTHYNCTAWNSFGSGTA 93 (98)
T ss_pred ECCCccccCCcEEEEEEEeCCccceE
Confidence 55665556 68999955544444333
No 340
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=92.99 E-value=0.19 Score=30.27 Aligned_cols=33 Identities=6% Similarity=-0.211 Sum_probs=20.9
Q ss_pred eccEEEeecc-ccccceeEEEEEecccceeEEee
Q psy15738 48 SCSYIILATS-LLHYLSYILAMEKEEEERKKKKK 80 (187)
Q Consensus 48 ~~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c~~ 80 (187)
..++.+.... .......|..++.+|+|.|.|..
T Consensus 56 ~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~ 89 (109)
T cd04983 56 KGRFSATLDKSRKSSSLHISAAQLSDSAVYFCAL 89 (109)
T ss_pred CCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEE
Confidence 3455443322 23344558899999999999943
No 341
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=92.34 E-value=0.52 Score=25.91 Aligned_cols=58 Identities=17% Similarity=0.195 Sum_probs=30.0
Q ss_pred ceEEccCCCCeeEEEeCeEeeeccEEEeeccccccceeEEEEEecccceeEEeeccceeeEEEEEEEEc
Q psy15738 27 AIMFADSRPESTFWIFGKLITSCSYIILATSLLHYLSYILAMEKEEEERKKKKKRKKRKKKKKKKEKRI 95 (187)
Q Consensus 27 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v~~ 95 (187)
++.+.-.....+.|++|..+..-. +..+. +-++.....|.|.|.... .+....|.|++
T Consensus 8 ~V~L~C~~~tsi~W~kG~~~~~~~-----~~tln----LGs~~~DPRG~Y~C~~s~--~~~~~~LQVyY 65 (69)
T cd07691 8 KVFLKCNGATNITWKKGKEILEVS-----NTLLD----LGSRINDPRGTYSCKESE--PNKEKTLQVYY 65 (69)
T ss_pred eEEEEecCCCcEEEecCccccccc-----ccEEe----ccCcccCCCcceEecCcc--CCCcEEEEEEE
Confidence 455553324557787764433111 12222 334445567999996654 34455666653
No 342
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=91.43 E-value=1.2 Score=26.21 Aligned_cols=21 Identities=10% Similarity=-0.019 Sum_probs=16.2
Q ss_pred cceeEEEEEecccceeEEeec
Q psy15738 61 YLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 61 ~~~~~~~v~~~d~g~y~c~~~ 81 (187)
....|..++.+|+|.|.|...
T Consensus 64 ~~L~I~~v~~~DsG~Y~C~~~ 84 (98)
T cd05716 64 FTVTLNQLRKEDAGWYWCGVG 84 (98)
T ss_pred EEEEEcCCCHHHCEEEEEEcc
Confidence 344478899999999999443
No 343
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=91.34 E-value=1.8 Score=25.46 Aligned_cols=14 Identities=0% Similarity=0.012 Sum_probs=9.1
Q ss_pred EEEEecccceeEEe
Q psy15738 66 LAMEKEEEERKKKK 79 (187)
Q Consensus 66 ~~v~~~d~g~y~c~ 79 (187)
+.+...+...|+|.
T Consensus 65 l~~~~~~~~~ysC~ 78 (93)
T cd05770 65 TEFTPTKGDEYACR 78 (93)
T ss_pred EEECCCCCCeEEEE
Confidence 44555667788883
No 344
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=91.29 E-value=1.9 Score=25.22 Aligned_cols=61 Identities=26% Similarity=0.499 Sum_probs=39.1
Q ss_pred EEEecCCcEEEEeEeccC-----CCCcEEEEeCCeeCCCCcEEEeC---cEEEEecCCCCCCeEEEEEE
Q psy15738 108 VEVKKGYSVTLECKADGN-----PVPNITWTRKNNNLPGGEYSYSG---NSLTVRHTNRHSAGIYLCVA 168 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g~-----p~p~~~W~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~ 168 (187)
..+..|..++..|..... ....+.|..++..++..++...+ +.+++.+......-.|.|..
T Consensus 13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 467889999999997532 34579999999888777765322 45666666555445666653
No 345
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=91.26 E-value=0.33 Score=28.87 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=16.8
Q ss_pred ccceeEEEEEecccceeEEeec
Q psy15738 60 HYLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 60 ~~~~~~~~v~~~d~g~y~c~~~ 81 (187)
...+.|.+++.+|.|.|.|...
T Consensus 66 ~~sL~I~~v~~~D~G~Y~C~v~ 87 (105)
T cd00099 66 SFTLTISSLQPEDSAVYYCAVS 87 (105)
T ss_pred EEEEEECCCCHHHCEEEEEEEe
Confidence 3445588999999999999433
No 346
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=91.13 E-value=1.8 Score=24.73 Aligned_cols=23 Identities=13% Similarity=0.407 Sum_probs=18.2
Q ss_pred eCcEEEEecCCCCCCeEEEEEEe
Q psy15738 147 SGNSLTVRHTNRHSAGIYLCVAN 169 (187)
Q Consensus 147 ~~~~l~i~~~~~~d~g~y~C~~~ 169 (187)
.............|+|.+.|.|.
T Consensus 41 ~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 41 TKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp ESSEEEEESBTCGGSEEEEEEEE
T ss_pred cceEEEEecCCCCCCEEEEEEEc
Confidence 34556677788899999999994
No 347
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=91.07 E-value=0.38 Score=28.83 Aligned_cols=30 Identities=3% Similarity=-0.024 Sum_probs=19.7
Q ss_pred ccEEEeecc-ccccceeEEEEEecccceeEE
Q psy15738 49 CSYIILATS-LLHYLSYILAMEKEEEERKKK 78 (187)
Q Consensus 49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c 78 (187)
.+..+..+. .......|.+++.+|+|.|.|
T Consensus 66 ~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C 96 (114)
T PF07686_consen 66 GRFTFSGNGSQNNFSLTIKNLQPSDSGTYFC 96 (114)
T ss_dssp TTEEEEEETTTTEEEEEESSESGGGEEEEEE
T ss_pred eeeeeeecccCCeEEEEECCCCcCcCEEEEE
Confidence 444444333 233445578999999999999
No 348
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=91.04 E-value=0.45 Score=29.14 Aligned_cols=18 Identities=6% Similarity=-0.117 Sum_probs=15.7
Q ss_pred cceeEEEEEecccceeEE
Q psy15738 61 YLSYILAMEKEEEERKKK 78 (187)
Q Consensus 61 ~~~~~~~v~~~d~g~y~c 78 (187)
..+.|..++.+|.|.|.|
T Consensus 80 ~sL~I~~v~~~D~G~Y~C 97 (116)
T cd05715 80 ASIVIHNLQFTDNGTYTC 97 (116)
T ss_pred eEEEEeeCCcccCEEEEE
Confidence 445689999999999999
No 349
>PHA03270 envelope glycoprotein C; Provisional
Probab=90.86 E-value=5.9 Score=30.26 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=38.2
Q ss_pred eEEEEEEEEcCCeeEEecCCceEEEecCCcE-EEEeEeccCCCCcEEEEeCCeeCCCCcEEE-------eCcEEEEecCC
Q psy15738 86 KKKKKKEKRIPPRIIYVSGAGKVEVKKGYSV-TLECKADGNPVPNITWTRKNNNLPGGEYSY-------SGNSLTVRHTN 157 (187)
Q Consensus 86 ~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~-~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~-------~~~~l~i~~~~ 157 (187)
+.++.-.|+.+|.+. +.+..|+.+ ...|... ...+.|+.++...+...... +.+...|+..-
T Consensus 317 nAa~~P~VY~~P~Is-------v~F~dG~AVCtA~CVPe---gV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~ 386 (466)
T PHA03270 317 NATGAPTVLPRPTIE-------MEFGGDEAVCTAACVPE---GVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSAL 386 (466)
T ss_pred cccccCccccCCeEE-------EEEeCCEEEEeccccCC---CCEEEEEecCCCCCCccceeecccCCCCCCceeeeccc
Confidence 445566677777664 334444433 3345443 23789998776554332211 11222333221
Q ss_pred -C-CCCeEEEEEEec
Q psy15738 158 -R-HSAGIYLCVANN 170 (187)
Q Consensus 158 -~-~d~g~y~C~~~n 170 (187)
. .+...|+|.+..
T Consensus 387 plSd~~~eYTCrl~G 401 (466)
T PHA03270 387 PLSREHSEYTCRLVG 401 (466)
T ss_pred ccccCCceEEEEEee
Confidence 1 124799999874
No 350
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=90.47 E-value=1.8 Score=25.50 Aligned_cols=14 Identities=21% Similarity=0.107 Sum_probs=8.5
Q ss_pred EEEEecccceeEEe
Q psy15738 66 LAMEKEEEERKKKK 79 (187)
Q Consensus 66 ~~v~~~d~g~y~c~ 79 (187)
+.+...+...|+|.
T Consensus 66 L~v~~~~~~~ytC~ 79 (94)
T cd05767 66 LNFTPEEGDIYSCI 79 (94)
T ss_pred EEEECCCCCeEEEE
Confidence 34555566678883
No 351
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=90.17 E-value=2.4 Score=24.58 Aligned_cols=55 Identities=22% Similarity=0.223 Sum_probs=35.7
Q ss_pred cEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738 115 SVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA 176 (187)
Q Consensus 115 ~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 176 (187)
...+.+.+.+. .+.+.|+.||..+.... ....+.. .....|.|...+.+..|...
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~---~~~~~~~---~~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQ---PGHQLFW---QPDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCC---CCCeEEe---CCCCCeeEEEEEEcCCCCEE
Confidence 45566666665 45999999999884332 1122222 22357999999988888763
No 352
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=89.99 E-value=2 Score=25.72 Aligned_cols=65 Identities=11% Similarity=0.128 Sum_probs=32.4
Q ss_pred EEEcCeeeeeeeecCcceEEccCCCCe---eEEEeC-eEeeeccEEEeec-cccccceeEEEEEecccc-eeEEeec
Q psy15738 11 FWIFGKPITRIMFADLAIMFADSRPES---TFWIFG-KLITSCSYIILAT-SLLHYLSYILAMEKEEEE-RKKKKKR 81 (187)
Q Consensus 11 w~~~g~~l~~~~~~~~~~~~~~~~~~~---~~w~~~-~~~~~~~~~~~~~-~~~~~~~~~~~v~~~d~g-~y~c~~~ 81 (187)
|..-|+.++ ++|.+.++.+.. +.|++| +.+....+..... .......+...+..+|.| .|+|.+.
T Consensus 12 ~~~eG~~~t------L~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~ 82 (100)
T cd05755 12 WQPVGKNYT------LQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETE 82 (100)
T ss_pred cccCCCcEE------EEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEE
Confidence 445555443 256666666655 377766 4443322211100 111223334566677777 8888444
No 353
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=89.51 E-value=1.9 Score=25.65 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=9.0
Q ss_pred CCeeEEEEcCeeee
Q psy15738 6 RPESTFWIFGKPIT 19 (187)
Q Consensus 6 ~p~i~w~~~g~~l~ 19 (187)
..+|+|++||+++.
T Consensus 33 ~i~v~W~~~g~~~~ 46 (100)
T cd07699 33 FATVQWKVDGATVS 46 (100)
T ss_pred CCEEEEEECCEECc
Confidence 45667777777654
No 354
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=89.03 E-value=5.7 Score=27.32 Aligned_cols=74 Identities=19% Similarity=0.355 Sum_probs=37.2
Q ss_pred EEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcEE-------EeCcEEEEecCC
Q psy15738 87 KKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPV--PNITWTRKNNNLPGGEYS-------YSGNSLTVRHTN 157 (187)
Q Consensus 87 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~-------~~~~~l~i~~~~ 157 (187)
.++.-.|+.+|.+. +.+..|. ..|.+.=-|. ..+.|..++......... .+.+...|++..
T Consensus 73 a~~~P~Vy~~P~vs-------v~F~~g~---AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~ 142 (211)
T PF02124_consen 73 ATATPSVYPKPRVS-------VRFEDGY---AVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRR 142 (211)
T ss_pred cccccceecCCEEE-------EEecCCE---EEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeeccc
Confidence 34455566666654 2233333 3355433332 568899887653211111 122344455443
Q ss_pred C--CCCe--EEEEEEec
Q psy15738 158 R--HSAG--IYLCVANN 170 (187)
Q Consensus 158 ~--~d~g--~y~C~~~n 170 (187)
. ...| +|+|.+..
T Consensus 143 pls~~~~~~~YtC~l~G 159 (211)
T PF02124_consen 143 PLSDEDGPVEYTCRLIG 159 (211)
T ss_pred CCCccCCceeEEEEEee
Confidence 2 2235 99999874
No 355
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=88.71 E-value=2.4 Score=24.97 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=8.1
Q ss_pred CCeeEEEEcCeee
Q psy15738 6 RPESTFWIFGKPI 18 (187)
Q Consensus 6 ~p~i~w~~~g~~l 18 (187)
..+|+|++||+++
T Consensus 30 ~I~vtW~~dg~~~ 42 (94)
T cd05847 30 TIEVEWLVDGQVA 42 (94)
T ss_pred CCEEEEEECCEEC
Confidence 3566677776654
No 356
>smart00406 IGv Immunoglobulin V-Type.
Probab=88.44 E-value=0.38 Score=26.89 Aligned_cols=30 Identities=10% Similarity=-0.125 Sum_probs=20.2
Q ss_pred ccEEEeecc-ccccceeEEEEEecccceeEE
Q psy15738 49 CSYIILATS-LLHYLSYILAMEKEEEERKKK 78 (187)
Q Consensus 49 ~~~~~~~~~-~~~~~~~~~~v~~~d~g~y~c 78 (187)
.++.+.... .......|.+++.+|+|.|.|
T Consensus 49 ~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 79 (81)
T smart00406 49 GRVTISKDTSKNDVSLTISNLRVEDTGTYYC 79 (81)
T ss_pred CcEEEEecCcCCEEEEEEcCCCHHHCEEEEE
Confidence 445444332 333445588999999999999
No 357
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=88.15 E-value=2.5 Score=24.86 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=9.0
Q ss_pred CCeeEEEEcCeeee
Q psy15738 6 RPESTFWIFGKPIT 19 (187)
Q Consensus 6 ~p~i~w~~~g~~l~ 19 (187)
..+++|++||+++.
T Consensus 30 ~i~v~W~~~g~~~~ 43 (94)
T cd05766 30 EITVKWFKNGQEET 43 (94)
T ss_pred CCEEEEEECCeecC
Confidence 34667777777654
No 358
>PHA03269 envelope glycoprotein C; Provisional
Probab=85.56 E-value=16 Score=28.66 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=38.6
Q ss_pred EEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCC--CcEEEEeCCeeCCCCcEEE------eCcEEEEec---
Q psy15738 87 KKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPV--PNITWTRKNNNLPGGEYSY------SGNSLTVRH--- 155 (187)
Q Consensus 87 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~------~~~~l~i~~--- 155 (187)
.++.-.|+.+|.+. +.+..|+.+ |.+.=-|. ..+.|+.++.......... +.+...++.
T Consensus 427 AaatP~VY~~PtIS-------m~FedG~AV---CtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~p 496 (566)
T PHA03269 427 AAVTPDVYPFPNVS-------IEIIDGHIV---CLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCD 496 (566)
T ss_pred cccCCccccCCeEE-------EEEeCCEEE---EecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeeccccc
Confidence 44555667777664 334444433 44433333 3688998776543332211 223444544
Q ss_pred CCCCC-CeEEEEEEec
Q psy15738 156 TNRHS-AGIYLCVANN 170 (187)
Q Consensus 156 ~~~~d-~g~y~C~~~n 170 (187)
++..| --.|+|.+..
T Consensus 497 LS~~dgpveYTCrL~G 512 (566)
T PHA03269 497 TSELDGPITYSCHLDG 512 (566)
T ss_pred ccccCCceeEEEEEee
Confidence 33333 2699999874
No 359
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=85.11 E-value=1.3 Score=25.72 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=16.3
Q ss_pred cceeEEEEEecccceeEEeec
Q psy15738 61 YLSYILAMEKEEEERKKKKKR 81 (187)
Q Consensus 61 ~~~~~~~v~~~d~g~y~c~~~ 81 (187)
...++..|+.+|+|.|+|...
T Consensus 53 ~~f~i~~v~~~~~G~Y~C~~~ 73 (91)
T cd05751 53 AKFFIPSMKREHAGRYRCYYR 73 (91)
T ss_pred EEEEccCCChhHCEEEEEEEE
Confidence 334577899999999999544
No 360
>KOG0613|consensus
Probab=84.91 E-value=2 Score=37.07 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=50.2
Q ss_pred EEEecCCcEEEEeEeccCCCCc-EEEEeCCeeCCCCc--E-----EEeCcEEEEecCCCCCCeEEEEEEecCCCCcc
Q psy15738 108 VEVKKGYSVTLECKADGNPVPN-ITWTRKNNNLPGGE--Y-----SYSGNSLTVRHTNRHSAGIYLCVANNMVGSSA 176 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~~~--~-----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 176 (187)
.....+..+.+.|...+.+.|. +.|+.++....... . ......+.+..+...+.+.|.|.|.|..|...
T Consensus 344 v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~ 420 (1205)
T KOG0613|consen 344 VTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQ 420 (1205)
T ss_pred eccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCccc
Confidence 4455677889999999998876 99998775432221 0 11234577888888899999999999888764
No 361
>PHA03052 Hypothetical protein; Provisional
Probab=83.52 E-value=4.8 Score=22.05 Aligned_cols=34 Identities=18% Similarity=0.395 Sum_probs=25.2
Q ss_pred ceEEEecCCcEEEEeEeccC-C--CCcEEEEeCCeeC
Q psy15738 106 GKVEVKKGYSVTLECKADGN-P--VPNITWTRKNNNL 139 (187)
Q Consensus 106 ~~~~~~~g~~~~l~C~~~g~-p--~p~~~W~~~~~~~ 139 (187)
..+.+..|..+++.|.+.-. | .+.+.|..|+...
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 44677889999999998433 3 3457898888765
No 362
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=82.64 E-value=9.3 Score=28.38 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=17.4
Q ss_pred cEEEEeEeccCCCC--cEEEEeC
Q psy15738 115 SVTLECKADGNPVP--NITWTRK 135 (187)
Q Consensus 115 ~~~l~C~~~g~p~p--~~~W~~~ 135 (187)
.+.|.|.|.|..|. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999998655 4789999
No 363
>PHA03271 envelope glycoprotein C; Provisional
Probab=82.25 E-value=20 Score=27.46 Aligned_cols=75 Identities=19% Similarity=0.330 Sum_probs=38.5
Q ss_pred eEEEEEEEEcCCeeEEecCCceEEEecCCcE-EEEeEeccCCCCcEEEEeCCeeCCCCcE-------E-EeCcEEEEec-
Q psy15738 86 KKKKKKEKRIPPRIIYVSGAGKVEVKKGYSV-TLECKADGNPVPNITWTRKNNNLPGGEY-------S-YSGNSLTVRH- 155 (187)
Q Consensus 86 ~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~-~l~C~~~g~p~p~~~W~~~~~~~~~~~~-------~-~~~~~l~i~~- 155 (187)
+.++.-.|+.+|.+. +.+..|+.+ ...|... ...+.|+.++.+.+.... . ...+...|+.
T Consensus 343 nAaatP~VY~~P~IS-------v~FedG~AVCtA~CVP~---gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~ 412 (490)
T PHA03271 343 NATAIPTVYHHPRIS-------LAFKDGYAICTIECVPS---GITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISR 412 (490)
T ss_pred ecccCCccccCCeEE-------EEEeCCEEEEeccccCC---CcEEEEEecCCCCCCcccccccccccCCCCCceeeecc
Confidence 344555666667664 334445433 3345443 247899887765432211 0 1223344444
Q ss_pred CCCCC---CeEEEEEEec
Q psy15738 156 TNRHS---AGIYLCVANN 170 (187)
Q Consensus 156 ~~~~d---~g~y~C~~~n 170 (187)
...+| --.|+|.+..
T Consensus 413 lPlSd~dgpveYTCrL~G 430 (490)
T PHA03271 413 IPVQDNWQKTKYTCRLIG 430 (490)
T ss_pred CCchhcCCceeEEEEEee
Confidence 33333 2699999874
No 364
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=81.69 E-value=8.6 Score=22.78 Aligned_cols=67 Identities=13% Similarity=0.268 Sum_probs=38.7
Q ss_pred EEEEeE-eccCCCCcEEEEeC--Cee-C---C-CCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738 116 VTLECK-ADGNPVPNITWTRK--NNN-L---P-GGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH 183 (187)
Q Consensus 116 ~~l~C~-~~g~p~p~~~W~~~--~~~-~---~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~ 183 (187)
+.-.|. +.|.|+..|.|.-+ |.. . . ......-.+.+.+......|.-...|.+.....+. ..++.|.
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~-~~~~~L~ 97 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRF-TDSVTLN 97 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccc-cccEEec
Confidence 455798 68889999999743 221 0 0 00000112334444555667779999999875555 3555554
No 365
>PHA02982 hypothetical protein; Provisional
Probab=79.94 E-value=6.8 Score=26.91 Aligned_cols=68 Identities=18% Similarity=0.428 Sum_probs=43.3
Q ss_pred EEecCCcEEEEeEeccC-CCCcEEEEeCCee-CC----------C-----CcE----E----EeCcEEEEecCCCCCCeE
Q psy15738 109 EVKKGYSVTLECKADGN-PVPNITWTRKNNN-LP----------G-----GEY----S----YSGNSLTVRHTNRHSAGI 163 (187)
Q Consensus 109 ~~~~g~~~~l~C~~~g~-p~p~~~W~~~~~~-~~----------~-----~~~----~----~~~~~l~i~~~~~~d~g~ 163 (187)
....++++.|.|..... --....|+.+... +. . +.+ . -.+++|+++++..+..|=
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC 114 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC 114 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence 44567888899984221 1235678764421 11 0 000 0 135789999999999999
Q ss_pred EEEEEecCCCCcc
Q psy15738 164 YLCVANNMVGSSA 176 (187)
Q Consensus 164 y~C~~~n~~g~~~ 176 (187)
|+|.+....+..+
T Consensus 115 Ytc~~ks~~~k~E 127 (251)
T PHA02982 115 FTCEAKDAEGKEE 127 (251)
T ss_pred eEEEEecCCCchh
Confidence 9999998776543
No 366
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=78.40 E-value=3.2 Score=29.47 Aligned_cols=44 Identities=16% Similarity=0.196 Sum_probs=30.6
Q ss_pred CCeeEEEE-cCeeeee----eeecCcceEEccCCCCeeEEEeCeEeeeccEEEee
Q psy15738 6 RPESTFWI-FGKPITR----IMFADLAIMFADSRPESTFWIFGKLITSCSYIILA 55 (187)
Q Consensus 6 ~p~i~w~~-~g~~l~~----~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 55 (187)
.|...|-. +|++|.. .+...++|.|.+..+...| .|.|.+..-.
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG------~YTCtLsYk~ 60 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSG------SYTCTLSYKP 60 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEccCceEEeeccccccCC------ceEEEEEEEe
Confidence 57888965 7888762 3334457888888888888 8877764433
No 367
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=76.50 E-value=6.4 Score=22.94 Aligned_cols=33 Identities=6% Similarity=-0.048 Sum_probs=19.7
Q ss_pred cceeEEEEEecccceeEEeeccceeeEEEEEEE
Q psy15738 61 YLSYILAMEKEEEERKKKKKRKKRKKKKKKKEK 93 (187)
Q Consensus 61 ~~~~~~~v~~~d~g~y~c~~~~~~~~~~~~l~v 93 (187)
....+..+...|.|..+|.-........+.++|
T Consensus 51 ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 51 KTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred cEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence 334467888889999999443323333444443
No 368
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=76.24 E-value=2.5 Score=25.99 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=20.7
Q ss_pred eccEEEeec-cccccceeEEEEEecccceeEEe
Q psy15738 48 SCSYIILAT-SLLHYLSYILAMEKEEEERKKKK 79 (187)
Q Consensus 48 ~~~~~~~~~-~~~~~~~~~~~v~~~d~g~y~c~ 79 (187)
.+|+.+..+ ........|..++.+|+|.|.|.
T Consensus 66 ~gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~ 98 (119)
T cd05712 66 RGRFRLLGDLGKKNCSLLISDAQPEDSGKYFFR 98 (119)
T ss_pred cccEEEecCCCCCEEEEEEccCChhhCeEEEEE
Confidence 345555321 22334455889999999999993
No 369
>PHA03189 UL14 tegument protein; Provisional
Probab=74.54 E-value=31 Score=25.28 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=16.2
Q ss_pred cCCCCCCeEEEEEEecCCCCc
Q psy15738 155 HTNRHSAGIYLCVANNMVGSS 175 (187)
Q Consensus 155 ~~~~~d~g~y~C~~~n~~g~~ 175 (187)
++..+.+|.|.|...|.....
T Consensus 139 ~v~t~taG~Y~CvLrN~tHgl 159 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGL 159 (348)
T ss_pred EEEecccceEEEEecccccee
Confidence 456667999999999976443
No 370
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=69.43 E-value=15 Score=20.03 Aligned_cols=44 Identities=25% Similarity=0.468 Sum_probs=25.2
Q ss_pred EEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEec
Q psy15738 117 TLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANN 170 (187)
Q Consensus 117 ~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 170 (187)
+|.|.... ...++||.||..+- +....++.+.++ .++|.|.-..
T Consensus 2 tltC~s~~--sLPiswYcN~TRLl----Rlt~~Tlt~~~l----tcNFtCV~qS 45 (71)
T PF11049_consen 2 TLTCPSNA--SLPISWYCNGTRLL----RLTQQTLTVVTL----TCNFTCVGQS 45 (71)
T ss_pred ceecCCCC--CCcccEEECCceee----eecCCeEeeeee----eEEeeecCCC
Confidence 35676543 34589999986542 122344444332 4788887543
No 371
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=63.29 E-value=55 Score=25.15 Aligned_cols=65 Identities=20% Similarity=0.318 Sum_probs=44.1
Q ss_pred EEEecCCcEEEEeEeccCC---CCcEEEEeCCeeCCC------------------CcEE----------EeCcEEEEecC
Q psy15738 108 VEVKKGYSVTLECKADGNP---VPNITWTRKNNNLPG------------------GEYS----------YSGNSLTVRHT 156 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g~p---~p~~~W~~~~~~~~~------------------~~~~----------~~~~~l~i~~~ 156 (187)
..++.|..+.+.|....-. .....|+..|-+..+ ..+. ..+++|+|.++
T Consensus 274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka 353 (500)
T PHA02914 274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA 353 (500)
T ss_pred eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence 3455599999999875422 235789876643221 0111 02478999999
Q ss_pred CCCCCeEEEEEEecCC
Q psy15738 157 NRHSAGIYLCVANNMV 172 (187)
Q Consensus 157 ~~~d~g~y~C~~~n~~ 172 (187)
.....|=|.|.|....
T Consensus 354 ~I~N~GCY~~~a~~g~ 369 (500)
T PHA02914 354 HINNAGCYEAQAFMGK 369 (500)
T ss_pred EEEcCCceEEEEecCc
Confidence 9999999999998764
No 372
>PHA03273 envelope glycoprotein C; Provisional
Probab=56.30 E-value=97 Score=24.36 Aligned_cols=72 Identities=15% Similarity=0.321 Sum_probs=35.9
Q ss_pred EEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCC--CcEEEEeCCeeCC-CCcE-----E-EeCcEEEEecC--
Q psy15738 88 KKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPV--PNITWTRKNNNLP-GGEY-----S-YSGNSLTVRHT-- 156 (187)
Q Consensus 88 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~-~~~~-----~-~~~~~l~i~~~-- 156 (187)
++.-.|+.+|.+. +.+..|+. .|.+.=-|. ..+.|+.++..-. .... . .+.+...|+..
T Consensus 336 t~~P~Vy~~P~Is-------~~F~~G~A---VCtA~CVP~egV~l~W~v~D~~p~a~~~~~~tG~C~~~PglvNlrS~~p 405 (486)
T PHA03273 336 AGTPSVFVAPTVS-------VTVEDGDA---VCTAKCVPSTGVFVSWSVNDHLPGVPSQDMTTGVCSSHPGLVNMQSRRP 405 (486)
T ss_pred cccCccccCCeEE-------EEEeCCEE---EEecccccCCCeeEEEEccCCCCCCcccccccccCCCCCCceeeecccc
Confidence 4455667777664 23444443 344433343 4688987773211 1100 0 12234455542
Q ss_pred -CCCCCe--EEEEEEec
Q psy15738 157 -NRHSAG--IYLCVANN 170 (187)
Q Consensus 157 -~~~d~g--~y~C~~~n 170 (187)
+..| | .|+|.+..
T Consensus 406 ls~~d-gp~eYTCrl~G 421 (486)
T PHA03273 406 LSEEN-GEREYSCIIEG 421 (486)
T ss_pred ccccC-CceeEEEEEee
Confidence 3333 5 99999874
No 373
>PHA03240 envelope glycoprotein M; Provisional
Probab=53.16 E-value=37 Score=23.49 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=22.2
Q ss_pred eCcEEEEecCCCCCCeEEEEEEecCCCCc
Q psy15738 147 SGNSLTVRHTNRHSAGIYLCVANNMVGSS 175 (187)
Q Consensus 147 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 175 (187)
.+++|.|.++..+|.|+|.-.-....|..
T Consensus 103 ~NstL~i~~vn~sd~~nYcr~k~~~~g~~ 131 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCRKKCPPKGDC 131 (258)
T ss_pred ccceEEEEEEeecCcchhhhccCCCCCCc
Confidence 46789999999999999965555455554
No 374
>PHA03286 envelope glycoprotein E; Provisional
Probab=47.27 E-value=64 Score=25.20 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=29.8
Q ss_pred CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738 148 GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185 (187)
Q Consensus 148 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 185 (187)
.+.|.|.+++...+|.|.-...|..|......+.|.|.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 46799999999999999999998876654445555664
No 375
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=42.47 E-value=1e+02 Score=20.46 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=20.1
Q ss_pred cEEEEecCCCCCCeEEEEEEecCC
Q psy15738 149 NSLTVRHTNRHSAGIYLCVANNMV 172 (187)
Q Consensus 149 ~~l~i~~~~~~d~g~y~C~~~n~~ 172 (187)
--|.|.+.+.+|+|.|.-.+.-..
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECC
Confidence 348899999999999999988543
No 376
>PHA03282 envelope glycoprotein E; Provisional
Probab=38.42 E-value=92 Score=24.56 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=20.9
Q ss_pred eCcEEEEecCCCCCCeEEEEEEec
Q psy15738 147 SGNSLTVRHTNRHSAGIYLCVANN 170 (187)
Q Consensus 147 ~~~~l~i~~~~~~d~g~y~C~~~n 170 (187)
.+.+|.|.++..+|+|.|.-.+..
T Consensus 122 ~n~tl~l~~a~~~DsG~Y~L~~~~ 145 (540)
T PHA03282 122 VNGTLVLREARETDSGMYVLSVSR 145 (540)
T ss_pred ecceEEEeeccccCCceEEEEecC
Confidence 467899999999999999998654
No 377
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=35.51 E-value=44 Score=26.10 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=17.1
Q ss_pred CcEEEEecCCCCCCeEEEEEEec
Q psy15738 148 GNSLTVRHTNRHSAGIYLCVANN 170 (187)
Q Consensus 148 ~~~l~i~~~~~~d~g~y~C~~~n 170 (187)
+-.|.+.++...++|.|.|.+.-
T Consensus 268 ~~~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 268 GVDLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp SSSEEESS--GGG-EEEEEEEEE
T ss_pred CcceEecCCCcccCceEEEEEEE
Confidence 35699999999999999999873
No 378
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=34.83 E-value=13 Score=28.91 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=0.0
Q ss_pred CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738 148 GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185 (187)
Q Consensus 148 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 185 (187)
.+.|.|.+++..|+|.|.-...+..+......+.|.|.
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~ 125 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVK 125 (439)
T ss_dssp --------------------------------------
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEc
Confidence 36799999999999999999987766554444555553
No 379
>PHA03283 envelope glycoprotein E; Provisional
Probab=33.97 E-value=1.1e+02 Score=24.48 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=28.3
Q ss_pred CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEEEE
Q psy15738 148 GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVL 185 (187)
Q Consensus 148 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 185 (187)
.+.|.|.+++..++|.|.-...+..+.. ...+.|.|.
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~-~~vflvtVk 169 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMK-HSVFFVTVK 169 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceE-EEEEEEEec
Confidence 4779999999999999999999876633 345555554
No 380
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=30.33 E-value=1.8e+02 Score=19.71 Aligned_cols=13 Identities=23% Similarity=0.209 Sum_probs=7.8
Q ss_pred CCCCeeEEEEcCe
Q psy15738 4 DSRPESTFWIFGK 16 (187)
Q Consensus 4 ~p~p~i~w~~~g~ 16 (187)
+..|.++|.....
T Consensus 120 ~s~PtitWsVgs~ 132 (226)
T PF05955_consen 120 VSQPTITWSVGSD 132 (226)
T ss_pred cCCCeEEEEeccc
Confidence 3467777766543
No 381
>KOG1026|consensus
Probab=29.71 E-value=43 Score=28.14 Aligned_cols=69 Identities=32% Similarity=0.396 Sum_probs=42.1
Q ss_pred EEEecCCcEEEEeEeccCCCCcEEEEeCCeeCCCCcEEEe-CcEEEEecCCCCCCeEEEEEEecCCCCcceeeEEEE
Q psy15738 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYS-GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH 183 (187)
Q Consensus 108 ~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~ 183 (187)
..+..+..+++.|.+.+.|-|.+.|+.++........... ....... .-.+.|.+.|..|... ..+.+.
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~------~~~~~c~~E~~~~~~~-~~v~~~ 271 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEV------LENDLCIAENAVARSN-PSILLV 271 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCccccccccccee------eechhhHHHHhhhhcC-ceeeeE
Confidence 4567788999999999999999999988765443221100 0011111 1127788888777662 344433
No 382
>PHA03282 envelope glycoprotein E; Provisional
Probab=28.60 E-value=72 Score=25.11 Aligned_cols=21 Identities=33% Similarity=0.730 Sum_probs=19.3
Q ss_pred cEEEEecCCCCCCeEEEEEEe
Q psy15738 149 NSLTVRHTNRHSAGIYLCVAN 169 (187)
Q Consensus 149 ~~l~i~~~~~~d~g~y~C~~~ 169 (187)
-.|.+.++...++|.|.|.+.
T Consensus 333 VdL~F~nAp~saSGLYVfVl~ 353 (540)
T PHA03282 333 VNLQLRDASEASGGLYVCVVY 353 (540)
T ss_pred cceEecCCCcccCceEEEEEE
Confidence 479999999999999999988
No 383
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=28.42 E-value=3.5e+02 Score=22.85 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=34.8
Q ss_pred EEEEeEeccCCCCcEEEEeCCeeCCCCcEEEeCcEEEEecCCCCCCeEEEEEEecCCCCcce
Q psy15738 116 VTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVGSSAA 177 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s 177 (187)
+.|.-...|. ...+.|+.||..+..... +.. ..-...+.|.|...+....|...+
T Consensus 672 ~~l~l~~~g~-~~~~~W~lng~~l~~~~~---~~~---~~w~~~~~G~~~ltVid~~G~~~s 726 (733)
T COG4953 672 VTLKLIAQGG-RGPIYWFLNGEPLGEASR---NRP---VTWKPEDAGYYKLTVIDASGRSAS 726 (733)
T ss_pred eEEEEEcCCC-cceeEEEeCCcCcccccc---CCc---ceeccCCCCeEEEEEEccCCceee
Confidence 4555544442 446899999988765421 111 122345689999999998887643
No 384
>PHA03292 envelope glycoprotein I; Provisional
Probab=28.22 E-value=2e+02 Score=22.11 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=20.3
Q ss_pred cEEEEecCCCCCCeEEEEEEecCC
Q psy15738 149 NSLTVRHTNRHSAGIYLCVANNMV 172 (187)
Q Consensus 149 ~~l~i~~~~~~d~g~y~C~~~n~~ 172 (187)
--|.|.+....|+|.|.-.+.-..
T Consensus 128 vLL~I~~P~~~DSGiY~LRV~Ldg 151 (413)
T PHA03292 128 VLLNITGPQPADSGAYILRVKLDH 151 (413)
T ss_pred eEEEeCCCCcccceeEEEEEEeCC
Confidence 468889999999999999988543
No 385
>COG5475 Uncharacterized small protein [Function unknown]
Probab=27.88 E-value=1e+02 Score=16.23 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=12.9
Q ss_pred CeEEEEEEecCCCCc
Q psy15738 161 AGIYLCVANNMVGSS 175 (187)
Q Consensus 161 ~g~y~C~~~n~~g~~ 175 (187)
.|.|.|...+..|..
T Consensus 28 ~Gmy~C~Wf~g~g~~ 42 (60)
T COG5475 28 DGMYECRWFDGYGVK 42 (60)
T ss_pred CCeEEEEEecCCCcc
Confidence 399999999998865
No 386
>KOG3611|consensus
Probab=27.66 E-value=1.8e+02 Score=24.75 Aligned_cols=56 Identities=18% Similarity=0.439 Sum_probs=33.7
Q ss_pred EEEEeEeccCCCCcEEEEeCCee------CCCCcEE--EeCcEEEEecCCCCCCeEEEEEEecCC
Q psy15738 116 VTLECKADGNPVPNITWTRKNNN------LPGGEYS--YSGNSLTVRHTNRHSAGIYLCVANNMV 172 (187)
Q Consensus 116 ~~l~C~~~g~p~p~~~W~~~~~~------~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~ 172 (187)
..|.|...+...+ +.|+..... ....... ...+.+.+..+...|.|.|.|.+....
T Consensus 572 ~~l~c~~~~~~a~-~~w~~~~~~~~~~~~~~~~~~~~~~~~G~lll~~~q~~~~G~y~c~~~e~~ 635 (737)
T KOG3611|consen 572 EVLRCVPSSNQAP-VVWYHQSTKDGRKEEVRQRDVVSRTDEGGLVLLSVQKLDGGTYPCYADESS 635 (737)
T ss_pred ceeeccccccccc-eeeEeeccCccccceeccCcceeecccCceeEEEEeeccCcccccccccCc
Confidence 5677776554333 778632211 1111111 123558888899999999999988654
No 387
>PHA03289 envelope glycoprotein I; Provisional
Probab=26.59 E-value=2.5e+02 Score=21.07 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=20.0
Q ss_pred cEEEEecCCCCCCeEEEEEEecCC
Q psy15738 149 NSLTVRHTNRHSAGIYLCVANNMV 172 (187)
Q Consensus 149 ~~l~i~~~~~~d~g~y~C~~~n~~ 172 (187)
--|.|.+...+|+|.|.-.+.-..
T Consensus 122 vLL~I~~Pr~~DSGiYyLRV~Ldg 145 (352)
T PHA03289 122 LLLTIIEPRMSDTGIYYIRVSLAG 145 (352)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCC
Confidence 357888999999999999988543
No 388
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.08 E-value=7.1e+02 Score=25.34 Aligned_cols=70 Identities=10% Similarity=-0.024 Sum_probs=46.8
Q ss_pred EEEecccceeEE----eeccceeeEEEEEEEEcCCeeEEecCCceEEEecCCcEEEEeEeccCCCCcEEEEeCCe
Q psy15738 67 AMEKEEEERKKK----KKRKKRKKKKKKKEKRIPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN 137 (187)
Q Consensus 67 ~v~~~d~g~y~c----~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~~W~~~~~ 137 (187)
..+..+.|.|+. .+.......+..+.|+.+..-..... ....+..|+.+.|.+.+...+...+.|..++.
T Consensus 1833 ~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~a-s~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdg 1906 (2740)
T TIGR00864 1833 CMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKA-SKKIAAIGEKVEFQILLAAGSAVNFRLQIGGA 1906 (2740)
T ss_pred EEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEec-ccccccCCCEEEEEEEecCCCceEEEEEeCCC
Confidence 355567788866 34445555667777877765433332 22356779999999988777777888987654
No 389
>PRK15372 pathogenicity island 2 effector protein SseI; Provisional
Probab=25.51 E-value=2.4e+02 Score=20.29 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=22.7
Q ss_pred ccEEEeeccccccceeEEEEEecccceeEEeeccc
Q psy15738 49 CSYIILATSLLHYLSYILAMEKEEEERKKKKKRKK 83 (187)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~d~g~y~c~~~~~ 83 (187)
..+-++..+... |++|...|+|.|+..-.+.
T Consensus 65 n~fcI~den~qE----ILSvt~dda~~YTV~c~g~ 95 (292)
T PRK15372 65 NYFCILDEDSQE----ILSVTLDDVGNYTVNCQGY 95 (292)
T ss_pred ceEEEEcCCCce----eEEEEEcCCCceEEEeCCc
Confidence 344555656666 9999999999998755554
No 390
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=23.05 E-value=1.4e+02 Score=16.19 Aligned_cols=20 Identities=40% Similarity=0.659 Sum_probs=11.5
Q ss_pred ecCCcEEEEeEeccCCCCcEEEEe
Q psy15738 111 KKGYSVTLECKADGNPVPNITWTR 134 (187)
Q Consensus 111 ~~g~~~~l~C~~~g~p~p~~~W~~ 134 (187)
..|..++| .|.+...+.|++
T Consensus 3 ~~G~N~TL----~Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 3 TVGSNVTL----VGPPDGPVTWYK 22 (63)
T ss_pred eEcCcEEE----eCCCCCceEEEE
Confidence 34555444 344445789983
No 391
>PHA03290 envelope glycoprotein I; Provisional
Probab=21.96 E-value=3.3e+02 Score=20.56 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=19.6
Q ss_pred cEEEEecCCCCCCeEEEEEEecC
Q psy15738 149 NSLTVRHTNRHSAGIYLCVANNM 171 (187)
Q Consensus 149 ~~l~i~~~~~~d~g~y~C~~~n~ 171 (187)
--|.+.+...+|+|.|.-.+.-.
T Consensus 129 vLL~I~~P~~~DSGiY~LRV~Ld 151 (357)
T PHA03290 129 IIFKINKPGIEDAGIYLLLVQLD 151 (357)
T ss_pred eEEEeCCCCcccCeeEEEEEEeC
Confidence 45888999999999999998843
Done!