BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15739
         (95 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4B4T|V Chain V, Near-Atomic Resolution Structural Model Of The Yeast 26s
           Proteasome
          Length = 306

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 60/85 (70%)

Query: 7   EPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQ 66
           EPRQTTSN G L K ++QALIHGLNRHYYS++I+Y K   E KML+NLHK+ W  GL + 
Sbjct: 169 EPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMY 228

Query: 67  DYNEHCKLNEGTVNDMLELAKHYNK 91
           DY E  + N      M+++A+ Y+K
Sbjct: 229 DYEEKEESNLAATKSMVKIAEQYSK 253


>pdb|4F7O|A Chain A, Crystal Structure Of Csn5
 pdb|4F7O|B Chain B, Crystal Structure Of Csn5
          Length = 257

 Score = 29.6 bits (65), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 23/33 (69%)

Query: 32  RHYYSISINYRKNELEQKMLLNLHKKTWMDGLS 64
           + YY++ ++Y K+ L++K+L  L  K W++ LS
Sbjct: 219 KQYYALEVSYFKSSLDRKLLELLWNKYWVNTLS 251


>pdb|2CSE|1 Chain 1, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
          Length = 1267

 Score = 26.9 bits (58), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 61  DGLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
           DGL + D N   K+N  T+  MLEL   Y +
Sbjct: 735 DGLMIIDGNTAGKVNSETIQKMLELISKYGE 765


>pdb|2AEX|A Chain A, The 1.58a Crystal Structure Of Human Coproporphyrinogen
           Oxidase Reveals The Structural Basis Of Hereditary
           Coproporphyria
          Length = 346

 Score = 26.2 bits (56), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 23  VQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDG 62
           V ++IH  N H  +I  NYR  E+E+    + +K+ W  G
Sbjct: 135 VSSVIHPKNPHAPTIHFNYRYFEVEEA---DGNKQWWFGG 171


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,926,493
Number of Sequences: 62578
Number of extensions: 101710
Number of successful extensions: 214
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 27
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)