BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15739
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V3H2|PSDE_DROME 26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila
melanogaster GN=Rpn11 PE=1 SV=1
Length = 308
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 85/91 (93%)
Query: 1 MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
M+VLGQEPRQTTSNLGHLQK SVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKK+W
Sbjct: 165 MLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWK 224
Query: 61 DGLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
DGL+L DYNEHC +NE TV +ML+LAK+YNK
Sbjct: 225 DGLTLSDYNEHCSINEDTVAEMLDLAKNYNK 255
>sp|O35593|PSDE_MOUSE 26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus
GN=Psmd14 PE=1 SV=2
Length = 310
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/92 (82%), Positives = 84/92 (91%)
Query: 1 MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
MMVLG EPRQTTSNLGHL K S+QALIHGLNRHYYSI+INYRKNELEQKMLLNLHKK+WM
Sbjct: 167 MMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWM 226
Query: 61 DGLSLQDYNEHCKLNEGTVNDMLELAKHYNKG 92
+GL+LQDY+EHCK NE V +MLELAK+YNK
Sbjct: 227 EGLTLQDYSEHCKHNESVVKEMLELAKNYNKA 258
>sp|O00487|PSDE_HUMAN 26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens
GN=PSMD14 PE=1 SV=1
Length = 310
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/92 (82%), Positives = 84/92 (91%)
Query: 1 MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
MMVLG EPRQTTSNLGHL K S+QALIHGLNRHYYSI+INYRKNELEQKMLLNLHKK+WM
Sbjct: 167 MMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWM 226
Query: 61 DGLSLQDYNEHCKLNEGTVNDMLELAKHYNKG 92
+GL+LQDY+EHCK NE V +MLELAK+YNK
Sbjct: 227 EGLTLQDYSEHCKHNESVVKEMLELAKNYNKA 258
>sp|Q9LT08|PSDE_ARATH 26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis
thaliana GN=RPN11 PE=2 SV=1
Length = 308
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 77/91 (84%)
Query: 2 MVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMD 61
++LGQEPRQTTSNLGHL K S+QALIHGLNRHYYSI+INYRKNELE+KMLLNLHKK W D
Sbjct: 167 IMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 226
Query: 62 GLSLQDYNEHCKLNEGTVNDMLELAKHYNKG 92
GL+L+ ++ H K NE TV +ML LA YNK
Sbjct: 227 GLTLRRFDTHSKTNEQTVQEMLSLAAKYNKA 257
>sp|Q86IJ1|PSDE_DICDI 26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium
discoideum GN=psmD14 PE=3 SV=1
Length = 306
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%)
Query: 7 EPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQ 66
EPRQ TSNLGHLQ S+QALIHGLNR+YYSI+INYRKNELEQKMLLNLHKK W +GL +
Sbjct: 170 EPRQITSNLGHLQDPSIQALIHGLNRNYYSIAINYRKNELEQKMLLNLHKKKWTEGLIVD 229
Query: 67 DYNEHCKLNEGTVNDMLELAKHYNKG 92
++ H + NE +N++LEL K Y K
Sbjct: 230 KFDTHEQSNEKQINNLLELTKQYQKS 255
>sp|O76577|PSDE_CAEEL 26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis
elegans GN=rpn-11 PE=1 SV=1
Length = 312
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 74/91 (81%)
Query: 2 MVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMD 61
M L QEPRQTTSNLGHLQK S+QALIHGLNRHYYSI I YR ++LEQKMLLNL+K +WMD
Sbjct: 170 MALNQEPRQTTSNLGHLQKPSIQALIHGLNRHYYSIPIAYRTHDLEQKMLLNLNKLSWMD 229
Query: 62 GLSLQDYNEHCKLNEGTVNDMLELAKHYNKG 92
+S+++Y++ + N+ + ML+LAK+Y K
Sbjct: 230 AVSVENYSKCGEQNKEHLKAMLKLAKNYKKA 260
>sp|P41878|RPN11_SCHPO 26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpn11 PE=1 SV=2
Length = 308
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 69/90 (76%)
Query: 2 MVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMD 61
+++GQEPRQTTSNLGH+ K S+QALIHGL RHYYS+ INY+K ELE+ MLLNLHK+ W
Sbjct: 167 LMMGQEPRQTTSNLGHINKPSIQALIHGLGRHYYSLRINYKKTELEEIMLLNLHKQPWAH 226
Query: 62 GLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
GL L+++N + N +++ M L++ Y +
Sbjct: 227 GLLLENFNSAAEKNHASIDKMKSLSEQYTE 256
>sp|Q6FKS1|RPN11_CANGA 26S proteasome regulatory subunit RPN11 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN11 PE=3 SV=1
Length = 306
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 60/86 (69%)
Query: 6 QEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSL 65
QEPRQTTSN G + K ++QALIHGLNRHYYS++I+Y K E KMLLNLHK+ W GL +
Sbjct: 168 QEPRQTTSNSGLMNKANIQALIHGLNRHYYSLNIDYHKTPAETKMLLNLHKEQWQSGLKM 227
Query: 66 QDYNEHCKLNEGTVNDMLELAKHYNK 91
QDY E N M+ +A+ Y+K
Sbjct: 228 QDYQEKETENLEATKRMVAVAQQYSK 253
>sp|P43588|RPN11_YEAST 26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN11 PE=1 SV=1
Length = 306
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 60/85 (70%)
Query: 7 EPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQ 66
EPRQTTSN G L K ++QALIHGLNRHYYS++I+Y K E KML+NLHK+ W GL +
Sbjct: 169 EPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMY 228
Query: 67 DYNEHCKLNEGTVNDMLELAKHYNK 91
DY E + N M+++A+ Y+K
Sbjct: 229 DYEEKEESNLAATKSMVKIAEQYSK 253
>sp|Q750E9|RPN11_ASHGO 26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPN11 PE=3 SV=1
Length = 311
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 61/90 (67%)
Query: 2 MVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMD 61
+V QEPRQTTSN+G L K ++Q+LIHGLNRHYYS++I+Y K E ML+NLHK+ W
Sbjct: 169 VVRNQEPRQTTSNVGLLNKPNIQSLIHGLNRHYYSLNIDYHKTSAELNMLMNLHKEQWQS 228
Query: 62 GLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
GL + DY E ++N + +A+ Y K
Sbjct: 229 GLKMHDYKEKERINLEATKKSVRIAEQYTK 258
>sp|Q8SQY3|RPN11_ENCCU 26S proteasome regulatory subunit RPN11 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN11 PE=1 SV=1
Length = 294
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 52/65 (80%)
Query: 3 VLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDG 62
VLG EPRQ TSN+G+L+ ++ ++IHGLN+HYYS +I RKN+ EQKMLLNLH+KTW D
Sbjct: 159 VLGGEPRQVTSNIGYLKTPTLISIIHGLNKHYYSFNITCRKNDFEQKMLLNLHRKTWADN 218
Query: 63 LSLQD 67
L L D
Sbjct: 219 LKLGD 223
>sp|P41883|YPT5_CAEEL Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans
GN=F37A4.5 PE=3 SV=1
Length = 319
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 56/85 (65%)
Query: 7 EPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQ 66
EPRQTTSNLGHL K S+ +++HGL YYS+++ YR EQKML+ L+KK+W D L++
Sbjct: 176 EPRQTTSNLGHLTKPSLISVVHGLGTKYYSLNVAYRMGSNEQKMLMCLNKKSWYDQLNMS 235
Query: 67 DYNEHCKLNEGTVNDMLELAKHYNK 91
Y+E K E + +L +NK
Sbjct: 236 TYSELEKKQEEKFKSINKLIAVFNK 260
>sp|Q54PF3|CSN5_DICDI COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum
GN=csn5 PE=1 SV=1
Length = 332
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 32 RHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLE 84
+ YYS+ I Y K+ L+Q++L L K W++ LS + G +ND+ E
Sbjct: 218 KQYYSLEITYFKSSLDQQLLDKLWNKYWVNTLSSSPIFSNRDYITGQINDLSE 270
>sp|Q6GLM9|CSN5_XENLA COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2
SV=1
Length = 332
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 32 RHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLE 84
+ YY++ + Y K+ L++K+L L K W++ LS + + G V D+ E
Sbjct: 217 KQYYALEVTYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNAEYTTGQVFDLSE 269
>sp|O35864|CSN5_MOUSE COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1
SV=3
Length = 334
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 32 RHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLE 84
+ YY++ ++Y K+ L++K+L L K W++ LS + G V D+ E
Sbjct: 219 KQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSE 271
>sp|Q6PC30|CSN5_DANRE COP9 signalosome complex subunit 5 OS=Danio rerio GN=cops5 PE=2
SV=1
Length = 334
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 32 RHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLE 84
+ YY++ ++Y K+ L++K+L L K W++ LS + G V D+ E
Sbjct: 217 KQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSE 269
>sp|Q92905|CSN5_HUMAN COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1
SV=4
Length = 334
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 32 RHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLE 84
+ YY++ ++Y K+ L++K+L L K W++ LS + G V D+ E
Sbjct: 219 KQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSE 271
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 1 MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKT 58
M+ LG +P Q T + S+ +L HG H Y I N R N + L++++ K+
Sbjct: 302 MIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKS 359
>sp|Q6P635|CSN5_XENTR COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5
PE=2 SV=1
Length = 334
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 32 RHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLE 84
+ YY++ + Y K+ L++K+L L K W++ LS + G V D+ E
Sbjct: 219 KQYYALEVTYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSE 271
>sp|B7JRB8|ATKB_BACC0 Potassium-transporting ATPase B chain OS=Bacillus cereus (strain
AH820) GN=kdpB PE=3 SV=1
Length = 697
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 33 HYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAK 87
H + SI+Y K EQ + +T M G+ LQD K+ +G V ++E K
Sbjct: 372 HVQAKSISYNKELAEQGEFIPFKAETRMSGVDLQD---GTKVRKGAVGSVIEWVK 423
>sp|Q9XZ58|CSN5_DROME COP9 signalosome complex subunit 5 OS=Drosophila melanogaster
GN=CSN5 PE=1 SV=1
Length = 327
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 32 RHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLE 84
+ YY + I+Y K+ L++++L +L K W++ L + + G + D+ E
Sbjct: 216 KQYYPLEISYFKSALDRRLLDSLWNKYWVNTLGSSGLLTNTEYTTGQIMDLSE 268
>sp|Q02099|RAD3_SCHPO Protein kinase rad3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rad3 PE=1 SV=2
Length = 2386
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 36 SISINYRKNELEQKMLLNLHKKTWMDGLS-----LQDYNEHCKLNEGTVNDMLELAKHY 89
++S+N+ +Q++LL+ + TW LS +Q E+ K G +N ML+ + HY
Sbjct: 1440 AVSLNFHDYSFDQQLLLHENSGTWDSALSCYEIIIQKDPENKKAKIGLLNSMLQ-SGHY 1497
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,309,233
Number of Sequences: 539616
Number of extensions: 1186611
Number of successful extensions: 3464
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3438
Number of HSP's gapped (non-prelim): 33
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)