Query psy15739
Match_columns 95
No_of_seqs 104 out of 135
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 20:09:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_V 26S proteasome regulato 99.8 1.8E-22 6.1E-27 157.2 -0.4 92 3-94 165-256 (306)
2 2ot9_A Hypothetical protein; Y 38.4 17 0.00058 26.6 2.2 26 29-54 16-44 (180)
3 3c0u_A Uncharacterized protein 38.1 17 0.00059 26.6 2.2 27 29-55 18-47 (183)
4 2g3w_A YAEQ protein, hypotheti 37.5 17 0.0006 26.6 2.1 27 29-55 16-45 (182)
5 1y74_B MLIN-2/CASK, peripheral 28.1 18 0.00062 20.4 0.7 15 15-29 25-39 (50)
6 3f6g_B Alpha-isopropylmalate s 26.7 12 0.0004 25.1 -0.3 19 18-36 106-124 (127)
7 3o0p_A Sortase family protein; 25.4 53 0.0018 24.0 3.0 30 65-94 10-40 (216)
8 3jrt_A Integron cassette prote 24.0 4.2 0.00015 30.0 -3.1 28 17-44 57-85 (192)
9 4g1h_A Sortase family protein; 23.8 53 0.0018 23.9 2.8 30 65-94 6-36 (215)
10 2epi_A UPF0045 protein MJ1052; 23.5 70 0.0024 20.6 3.0 27 23-49 64-93 (100)
11 3g66_A Sortase C; pilus, trans 20.8 59 0.002 23.7 2.4 29 66-94 6-35 (212)
12 4g1j_A Sortase family protein; 20.1 44 0.0015 24.5 1.7 28 66-93 7-35 (222)
No 1
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.8e-22 Score=157.20 Aligned_cols=92 Identities=50% Similarity=0.823 Sum_probs=57.0
Q ss_pred ccCCCCcccccccccccchhHHHHHhhcCCceeeeeeeeeCCHHHHHHHhhhcccccccCCCccchHHHHhhhHHHHHHH
Q psy15739 3 VLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDM 82 (95)
Q Consensus 3 m~gqEPRQTTSNiGhL~KPSiqAlihGLnr~YYSi~I~yrk~~lEqkMLlnLhKk~W~~gL~l~~~~~~~~~N~~~v~~m 82 (95)
..+++|||++||.|++.+|+++++.||++++||+++|+|+|+++|++||.+|+++.|..+|.+.+|.++.+.|.+.+++|
T Consensus 165 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~l~~~~~~~~~~~~~~~i~~m 244 (306)
T 4b4t_V 165 INNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAATKSM 244 (306)
T ss_dssp HCCCCCSCC----------------------CEEECSCCCCCSSCTHHHHHHHHC----------CHHHHHHHHHHHHHH
T ss_pred ccccCcccccccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC
Q psy15739 83 LELAKHYNKGKT 94 (95)
Q Consensus 83 ~~La~~Y~k~i~ 94 (95)
++++++|.|.|+
T Consensus 245 ~~~~~~y~k~v~ 256 (306)
T 4b4t_V 245 VKIAEQYSKRIE 256 (306)
T ss_dssp SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 2
>2ot9_A Hypothetical protein; YAEQ protein, PSI-2, protein structure initiative, MCSG, structural genomics, midwest center for S genomics; HET: SRT; 1.97A {Pseudomonas syringae PV} SCOP: c.52.1.33
Probab=38.44 E-value=17 Score=26.62 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=22.9
Q ss_pred hcCCcee---eeeeeeeCCHHHHHHHhhh
Q psy15739 29 GLNRHYY---SISINYRKNELEQKMLLNL 54 (95)
Q Consensus 29 GLnr~YY---Si~I~yrk~~lEqkMLlnL 54 (95)
-++|||| ++.|.-..+|-+++|+..|
T Consensus 16 DmDR~~Y~~~~LTlArHPSET~eRmM~Rl 44 (180)
T 2ot9_A 16 DLDRGVYESVKQTIARHPSETEERMTVRL 44 (180)
T ss_dssp ETTTTEEEEEEEEEEECTTSCHHHHHHHH
T ss_pred ecCcccccchheeeecCCCccHHHHHHHH
Confidence 4789998 6889999999999999876
No 3
>3c0u_A Uncharacterized protein YAEQ; PSI-2, protein structure initiative, center for structural genomics, MCSG, structural genomics, function; 2.70A {Escherichia coli}
Probab=38.14 E-value=17 Score=26.65 Aligned_cols=27 Identities=26% Similarity=0.564 Sum_probs=23.2
Q ss_pred hcCCcee---eeeeeeeCCHHHHHHHhhhc
Q psy15739 29 GLNRHYY---SISINYRKNELEQKMLLNLH 55 (95)
Q Consensus 29 GLnr~YY---Si~I~yrk~~lEqkMLlnLh 55 (95)
-++|||| ++.|.-..+|-+++|+..|=
T Consensus 18 DmDR~~Y~~~~LTlArHPSET~eRmM~RlL 47 (183)
T 3c0u_A 18 DLDRNQFLDASLTLARHPSETQERMMLRLL 47 (183)
T ss_dssp ETTTTEEEEEEEEEEECTTSCHHHHHHHHH
T ss_pred ecCcccccchheeeecCCCccHHHHHHHHH
Confidence 4789998 68899999999999998763
No 4
>2g3w_A YAEQ protein, hypothetical protein XAC2396; xanthomonas axonopodis PV citri, unknown funct; HET: MSE; 1.90A {Xanthomonas axonopodis PV} SCOP: c.52.1.33
Probab=37.50 E-value=17 Score=26.60 Aligned_cols=27 Identities=22% Similarity=0.635 Sum_probs=23.2
Q ss_pred hcCCcee---eeeeeeeCCHHHHHHHhhhc
Q psy15739 29 GLNRHYY---SISINYRKNELEQKMLLNLH 55 (95)
Q Consensus 29 GLnr~YY---Si~I~yrk~~lEqkMLlnLh 55 (95)
-++|||| ++.|.-..+|-+++|+..|=
T Consensus 16 DmDR~~Y~~~~LTlArHPSET~eRmM~RlL 45 (182)
T 2g3w_A 16 DMDRGYYANHSLTLAQHPSETDERLMVRLL 45 (182)
T ss_dssp ETTTTEEEEEEEEEEECTTCCHHHHHHHHH
T ss_pred ecCcccccchheeeecCCCccHHHHHHHHH
Confidence 4789998 68899999999999998763
No 5
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=28.06 E-value=18 Score=20.42 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=11.8
Q ss_pred cccccchhHHHHHhh
Q psy15739 15 LGHLQKHSVQALIHG 29 (95)
Q Consensus 15 iGhL~KPSiqAlihG 29 (95)
..-|++|.+|||++-
T Consensus 25 ~~lL~~PHfqaLl~a 39 (50)
T 1y74_B 25 KRILTQPHFMALLQT 39 (50)
T ss_dssp HHHHHSHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHH
Confidence 355889999999864
No 6
>3f6g_B Alpha-isopropylmalate synthase; licmsc, allosteric regulation, feedback inhibition, selectivity, specificity, transferase; 2.00A {Leptospira interrogans} PDB: 3f6h_A
Probab=26.71 E-value=12 Score=25.14 Aligned_cols=19 Identities=21% Similarity=0.053 Sum_probs=15.1
Q ss_pred ccchhHHHHHhhcCCceee
Q psy15739 18 LQKHSVQALIHGLNRHYYS 36 (95)
Q Consensus 18 L~KPSiqAlihGLnr~YYS 36 (95)
+...|++|++.+|||.+.+
T Consensus 106 Ii~AS~~A~~~alNr~~~~ 124 (127)
T 3f6g_B 106 QTVAAVHATEKMLNQILQP 124 (127)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3568999999999996554
No 7
>3o0p_A Sortase family protein; PILI assembly, PILI subunits, transferase ,hydrolas transferase, hydrolase; 1.30A {Streptococcus agalactiae}
Probab=25.40 E-value=53 Score=24.03 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=23.3
Q ss_pred ccchHHHH-hhhHHHHHHHHHHHHHHhcCCC
Q psy15739 65 LQDYNEHC-KLNEGTVNDMLELAKHYNKGKT 94 (95)
Q Consensus 65 l~~~~~~~-~~N~~~v~~m~~La~~Y~k~i~ 94 (95)
+.+|++.. +.+.+.++++.+.|+.||+.+.
T Consensus 10 ~~~y~~~~~~~~~~~~~~~~~~a~~yN~~l~ 40 (216)
T 3o0p_A 10 TQDFERAAKKLSQKEINRRMALAQAYNDSLN 40 (216)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHhc
Confidence 45676654 4467889999999999999763
No 8
>3jrt_A Integron cassette protein VPC_CASS2; mobIle metagenome, structural genomics, PSI-2 protein structure initiative; 2.30A {Vibrio paracholerae}
Probab=24.02 E-value=4.2 Score=30.02 Aligned_cols=28 Identities=36% Similarity=0.358 Sum_probs=21.6
Q ss_pred cccchhHHHHHhhcCC-ceeeeeeeeeCC
Q psy15739 17 HLQKHSVQALIHGLNR-HYYSISINYRKN 44 (95)
Q Consensus 17 hL~KPSiqAlihGLnr-~YYSi~I~yrk~ 44 (95)
.+.+|+.++--.+.=| -||||+|++||-
T Consensus 57 ~~h~p~~kt~RQciwRLCf~SIViNCrKY 85 (192)
T 3jrt_A 57 FLREPQHQTKRQCIWRLCVYSIVINCRKY 85 (192)
T ss_dssp GGGSGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3567777777666666 699999999984
No 9
>4g1h_A Sortase family protein; cysteine protease, extracellular, transferase; 1.80A {Streptococcus agalactiae serogroup V}
Probab=23.83 E-value=53 Score=23.94 Aligned_cols=30 Identities=23% Similarity=0.498 Sum_probs=18.0
Q ss_pred ccchHHHH-hhhHHHHHHHHHHHHHHhcCCC
Q psy15739 65 LQDYNEHC-KLNEGTVNDMLELAKHYNKGKT 94 (95)
Q Consensus 65 l~~~~~~~-~~N~~~v~~m~~La~~Y~k~i~ 94 (95)
+.+|++.. +.+.+.++++.+.|+.||+.+.
T Consensus 6 ~~~y~~~~~~~~~~~~~~~~~~a~~yN~~l~ 36 (215)
T 4g1h_A 6 INQFKREVAKIDTNTVERRIALANAYNETLS 36 (215)
T ss_dssp ----------CCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 45565543 4467888999999999999863
No 10
>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein structural and functiona analyses; 1.70A {Methanocaldococcus jannaschii} PDB: 2eky_A
Probab=23.50 E-value=70 Score=20.58 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=20.9
Q ss_pred HHHHHhhcCCceeeeeeeeeCC---HHHHH
Q psy15739 23 VQALIHGLNRHYYSISINYRKN---ELEQK 49 (95)
Q Consensus 23 iqAlihGLnr~YYSi~I~yrk~---~lEqk 49 (95)
..|+..|.+|-+..+-|++|.. .+|+|
T Consensus 64 ~e~~~~g~~RV~~~iKid~R~d~~~~~~~K 93 (100)
T 2epi_A 64 HSTVLNDVDRVVSSLKIDERKDKENTIERK 93 (100)
T ss_dssp HHHHHTTSSEEEEEEEEEEESSSCCCHHHH
T ss_pred HHHHHcCCCEEEEEEEEEecCCCCCCHHHH
Confidence 3456669999999999999965 45555
No 11
>3g66_A Sortase C; pilus, transferase; HET: MES; 1.70A {Streptococcus pneumoniae} PDB: 3g69_A*
Probab=20.78 E-value=59 Score=23.66 Aligned_cols=29 Identities=14% Similarity=0.448 Sum_probs=21.9
Q ss_pred cchHHH-HhhhHHHHHHHHHHHHHHhcCCC
Q psy15739 66 QDYNEH-CKLNEGTVNDMLELAKHYNKGKT 94 (95)
Q Consensus 66 ~~~~~~-~~~N~~~v~~m~~La~~Y~k~i~ 94 (95)
.+|++. ++.+.+.++++.+.|+.||+.+.
T Consensus 6 ~~y~~~~~~~~~~~~~~~~~~a~~yN~~l~ 35 (212)
T 3g66_A 6 KEFDETVSQMDKAELEERWRLAQAFNATLK 35 (212)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 455554 44477889999999999998763
No 12
>4g1j_A Sortase family protein; cysteine protease, extracellular, transferase; 1.75A {Streptococcus agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A 3rbj_A
Probab=20.13 E-value=44 Score=24.52 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=21.5
Q ss_pred cchHHH-HhhhHHHHHHHHHHHHHHhcCC
Q psy15739 66 QDYNEH-CKLNEGTVNDMLELAKHYNKGK 93 (95)
Q Consensus 66 ~~~~~~-~~~N~~~v~~m~~La~~Y~k~i 93 (95)
.+|++. ++.+.+.++++.+.|+.||+.+
T Consensus 7 ~~y~~~~~~~~~~~~~~~~~~a~~yN~~l 35 (222)
T 4g1j_A 7 NAFKEAVTKIDRVEINRRLELAYAYNASI 35 (222)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 456555 3447888999999999999864
Done!