Query psy15739
Match_columns 95
No_of_seqs 104 out of 135
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 20:09:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15739.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15739hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ot9a1 c.52.1.33 (A:2-180) Hy 47.4 4.8 0.00035 27.8 2.2 26 29-54 15-43 (179)
2 d2g3wa1 c.52.1.33 (A:4-182) Hy 42.7 6.1 0.00044 27.1 2.1 27 29-55 13-42 (179)
3 d1rz4a2 a.118.1.18 (A:2-131) E 24.0 11 0.00082 24.5 0.9 14 20-33 7-20 (130)
4 d3buxb3 d.93.1.1 (B:264-351) C 22.3 9.7 0.00071 23.5 0.2 21 18-38 57-77 (88)
5 d1t27a_ d.129.3.4 (A:) Phoshat 18.2 38 0.0028 24.3 2.8 38 46-84 216-259 (269)
6 d2iboa1 d.58.48.1 (A:1-90) Hyp 18.0 46 0.0033 19.6 2.8 24 21-44 58-81 (90)
7 d1sr9a3 d.270.1.1 (A:492-643) 17.4 13 0.00092 24.4 -0.1 16 17-32 135-150 (152)
8 d1lnwa_ a.4.5.28 (A:) MexR rep 15.9 22 0.0016 21.4 0.9 61 21-84 10-72 (141)
9 d1lxna_ d.58.48.1 (A:) Hypothe 15.1 39 0.0028 20.5 1.9 17 28-44 67-83 (99)
10 d1y74b1 a.194.1.1 (B:83-132) P 14.4 25 0.0018 19.5 0.7 14 15-28 25-38 (50)
No 1
>d2ot9a1 c.52.1.33 (A:2-180) Hypothetical protein PSPTO1487 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=47.37 E-value=4.8 Score=27.76 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=22.8
Q ss_pred hcCCcee---eeeeeeeCCHHHHHHHhhh
Q psy15739 29 GLNRHYY---SISINYRKNELEQKMLLNL 54 (95)
Q Consensus 29 GLnr~YY---Si~I~yrk~~lEqkMLlnL 54 (95)
-++|||| ++.|.=..+|-+++|+..|
T Consensus 15 DmDR~~Y~~~~LTlArHPSEt~eRmm~Rl 43 (179)
T d2ot9a1 15 DLDRGVYESVKQTIARHPSETEERMTVRL 43 (179)
T ss_dssp ETTTTEEEEEEEEEEECTTSCHHHHHHHH
T ss_pred eccccccccceEEEecCCCccHHHHHHHH
Confidence 4789998 6889999999999999876
No 2
>d2g3wa1 c.52.1.33 (A:4-182) Hypothetical protein XAC2396 {Xanthomonas axonopodis pv. citri [TaxId: 92829]}
Probab=42.75 E-value=6.1 Score=27.15 Aligned_cols=27 Identities=22% Similarity=0.635 Sum_probs=23.2
Q ss_pred hcCCcee---eeeeeeeCCHHHHHHHhhhc
Q psy15739 29 GLNRHYY---SISINYRKNELEQKMLLNLH 55 (95)
Q Consensus 29 GLnr~YY---Si~I~yrk~~lEqkMLlnLh 55 (95)
-++|||| ++.|.=..+|-+++|+..|=
T Consensus 13 DmDR~~Y~~~~lTlArHPSEt~eRmm~RlL 42 (179)
T d2g3wa1 13 DMDRGYYANHSLTLAQHPSETDERLMVRLL 42 (179)
T ss_dssp ETTTTEEEEEEEEEEECTTCCHHHHHHHHH
T ss_pred eccccccccceEEEecCCCccHHHHHHHHH
Confidence 4789998 68899999999999998763
No 3
>d1rz4a2 a.118.1.18 (A:2-131) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.01 E-value=11 Score=24.54 Aligned_cols=14 Identities=29% Similarity=0.627 Sum_probs=11.5
Q ss_pred chhHHHHHhhcCCc
Q psy15739 20 KHSVQALIHGLNRH 33 (95)
Q Consensus 20 KPSiqAlihGLnr~ 33 (95)
+.+|.++++|++|+
T Consensus 7 ~~~i~~lL~gidRY 20 (130)
T d1rz4a2 7 RANVGKLLKGIDRY 20 (130)
T ss_dssp HHHHHHHHHSGGGG
T ss_pred HHHHHHHHhCcccC
Confidence 56789999999984
No 4
>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.29 E-value=9.7 Score=23.54 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=17.4
Q ss_pred ccchhHHHHHhhcCCceeeee
Q psy15739 18 LQKHSVQALIHGLNRHYYSIS 38 (95)
Q Consensus 18 L~KPSiqAlihGLnr~YYSi~ 38 (95)
.+||-.||||.|-..-||-.+
T Consensus 57 ~nk~L~qaLidG~reGfylyP 77 (88)
T d3buxb3 57 HNKPLFQALIDGFREGFYLFP 77 (88)
T ss_dssp SSCCHHHHHHHHHHHTSSCEE
T ss_pred CccHHHHHHHhcccceeEECC
Confidence 479999999999888777554
No 5
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.19 E-value=38 Score=24.29 Aligned_cols=38 Identities=18% Similarity=0.523 Sum_probs=30.4
Q ss_pred HHHHHHhhhcccc------cccCCCccchHHHHhhhHHHHHHHHH
Q psy15739 46 LEQKMLLNLHKKT------WMDGLSLQDYNEHCKLNEGTVNDMLE 84 (95)
Q Consensus 46 lEqkMLlnLhKk~------W~~gL~l~~~~~~~~~N~~~v~~m~~ 84 (95)
-+.+.+++.||+- |. ||+++|..+.++...+.+.++.+
T Consensus 216 ~~r~~~l~~HRq~fcW~DeW~-gmTmedIR~~E~e~q~~L~~~~~ 259 (269)
T d1t27a_ 216 QEKRLFTNFHRQLFCWLDKWV-DLTMDDIRRMEEETKRQLDEMRQ 259 (269)
T ss_dssp HHHHHHHHHHHHHHHTHHHHT-TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHheeHHHHc-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 3567899999984 44 99999999999888887777653
No 6
>d2iboa1 d.58.48.1 (A:1-90) Hypothetical protein SP2199 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=18.02 E-value=46 Score=19.58 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=19.9
Q ss_pred hhHHHHHhhcCCceeeeeeeeeCC
Q psy15739 21 HSVQALIHGLNRHYYSISINYRKN 44 (95)
Q Consensus 21 PSiqAlihGLnr~YYSi~I~yrk~ 44 (95)
-..+++..|.+|-++.|-|.||..
T Consensus 58 ~~~e~~~~g~~rv~~~iKId~r~~ 81 (90)
T d2iboa1 58 EALEVAGQEADNVFANVKINVGEI 81 (90)
T ss_dssp HHHHHHHTSCSCEEEEEEEEEESC
T ss_pred HHHHHHHcCCCeEEEEEEEEcCCC
Confidence 345677889999999999999953
No 7
>d1sr9a3 d.270.1.1 (A:492-643) 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.39 E-value=13 Score=24.36 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=14.2
Q ss_pred cccchhHHHHHhhcCC
Q psy15739 17 HLQKHSVQALIHGLNR 32 (95)
Q Consensus 17 hL~KPSiqAlihGLnr 32 (95)
-+...|++|++.+|||
T Consensus 135 dIv~AS~~A~v~AlNr 150 (152)
T d1sr9a3 135 SITTASLRAVVSAVNR 150 (152)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc
Confidence 5678999999999998
No 8
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=15.91 E-value=22 Score=21.43 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=43.7
Q ss_pred hhHHHHHhhcCCceeeee--eeeeCCHHHHHHHhhhcccccccCCCccchHHHHhhhHHHHHHHHH
Q psy15739 21 HSVQALIHGLNRHYYSIS--INYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLE 84 (95)
Q Consensus 21 PSiqAlihGLnr~YYSi~--I~yrk~~lEqkMLlnLhKk~W~~gL~l~~~~~~~~~N~~~v~~m~~ 84 (95)
+++.++.+.+.+.+.+-- -.|--+..|-.+|..|... +|....+..+.-.-+..+|..+++
T Consensus 10 ~~l~~~~~~~~~~~~~~~~~~~~~lt~~q~~vL~~l~~~---~~~t~~~la~~l~~~~~~vsr~l~ 72 (141)
T d1lnwa_ 10 PALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ---RGLNLQDLGRQMCRDKALITRKIR 72 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSS---TTCBHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHC---CCCCHHHHHHHHCccHhHHHHHHH
Confidence 445556666555544432 2345588999999999875 689999999998888888877665
No 9
>d1lxna_ d.58.48.1 (A:) Hypothetical protein MTH1187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=15.15 E-value=39 Score=20.47 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=15.4
Q ss_pred hhcCCceeeeeeeeeCC
Q psy15739 28 HGLNRHYYSISINYRKN 44 (95)
Q Consensus 28 hGLnr~YYSi~I~yrk~ 44 (95)
-|.+|-|.+|-|+||..
T Consensus 67 ~G~~RV~t~iKId~R~d 83 (99)
T d1lxna_ 67 AGSDRVYTTLKIDDRRD 83 (99)
T ss_dssp TTCSEEEEEEEEEEESS
T ss_pred CCCCeEEEEEEEeccCC
Confidence 48999999999999985
No 10
>d1y74b1 a.194.1.1 (B:83-132) Peripheral plasma membrane protein cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.43 E-value=25 Score=19.50 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=11.4
Q ss_pred cccccchhHHHHHh
Q psy15739 15 LGHLQKHSVQALIH 28 (95)
Q Consensus 15 iGhL~KPSiqAlih 28 (95)
.+-|++|.++||..
T Consensus 25 ~~lL~~PH~~aLL~ 38 (50)
T d1y74b1 25 KRILTQPHFMALLQ 38 (50)
T ss_dssp HHHHHSHHHHHHHH
T ss_pred HHHHhCHHHHHHHH
Confidence 45689999999975
Done!