RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15739
(95 letters)
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated
deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens}
PDB: 3rzu_A
Length = 211
Score = 38.1 bits (88), Expect = 9e-05
Identities = 4/41 (9%), Positives = 8/41 (19%)
Query: 2 MVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYR 42
+ RQ + + H + R
Sbjct: 171 LEEISSCRQKGFHPHSKDPPLFCSCSHVTVVDRAVTITDLR 211
>2znr_A AMSH-like protease; metal binding protein, alternative splicing,
hydrolase, metal-binding, metalloprotease, UBL
conjugation pathway, zinc; 1.20A {Homo sapiens} PDB:
2znv_A
Length = 178
Score = 35.1 bits (80), Expect = 0.001
Identities = 6/43 (13%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 1 MMVLGQEPRQTTSNLGHLQKHSVQALI-HGLNRHYYSISINYR 42
M+ + + H ++ + ++ H L + I ++ R
Sbjct: 138 MLEVSACKK--KGFHPHTKEPRLFSICKHVLVKDIKIIVLDLR 178
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.18
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 22/94 (23%)
Query: 19 QKHSVQALIHGLNRHYY-----SISINYRKNELEQKMLLNLHKKTWMDGLSLQDYN---- 69
Q+ VQ + + R Y I R+ + +M + + + D YN
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 70 -EHCKLNEGTVNDMLELAKHYN--------KGKT 94
+ KL + +LEL N GKT
Sbjct: 135 QPYLKLRQA----LLELRPAKNVLIDGVLGSGKT 164
Score = 27.1 bits (59), Expect = 0.81
Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 22/115 (19%)
Query: 2 MVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMD 61
+ L + L LQK Q + +R +S +I R + ++ ++ L K + +
Sbjct: 187 LNLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 62 GL----------SLQDYNEHCKL----NEGTVNDMLELAK-------HYNKGKTP 95
L + +N CK+ V D L A H++ TP
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Score = 27.1 bits (59), Expect = 0.99
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 20/90 (22%)
Query: 4 LGQEPRQTTSNL-GHLQKHSVQALIHGLNRHY--YSISINYRKNELEQKMLLNLHK---- 56
+ E RQ + ++++ ++ N+ + Y++S +L ++ LL L
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDR---LYNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNV 153
Query: 57 ---------KTWMDGLSLQDYNEHCKLNEG 77
KTW+ Y CK++
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Score = 26.7 bits (58), Expect = 1.1
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 18 LQKHSVQALIHGLNRHYYSISI-NYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNE 76
+ VQ ++ + +++ N E +ML L + + S D++ + KL
Sbjct: 171 CLSYKVQCK---MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 77 GTVNDML 83
++ L
Sbjct: 228 HSIQAEL 234
Score = 25.6 bits (55), Expect = 3.6
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 15 LGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKL 74
+ L K+S+ + SI Y + +++ + LH+ + YN
Sbjct: 408 VNKLHKYSL--VEKQPKESTISIPSIYLELKVKLENEYALHRSI------VDHYNIPKTF 459
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 26.8 bits (60), Expect = 1.2
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 13/34 (38%)
Query: 13 SNLGHLQ---------KHSVQALIHGL---NRHY 34
SN+GH + K + +L HGL N H+
Sbjct: 329 SNMGHPEPASGLAALAK-VLLSLEHGLWAPNLHF 361
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich,
helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET:
GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP:
a.211.1.1 d.218.1.8
Length = 393
Score = 26.8 bits (60), Expect = 1.3
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 16 GHLQKHSVQALIHGLNRHYYSISINYRK 43
+ + + ++G +H YSI YRK
Sbjct: 227 SYTTEQGLFGDVYGRPKHIYSI---YRK 251
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 26.1 bits (58), Expect = 1.8
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 10/27 (37%)
Query: 13 SNLGHLQ---------KHSVQALIHGL 30
SN+GH Q K +V AL HG
Sbjct: 370 SNIGHTQAAAGVAGVMK-AVLALRHGE 395
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine
transcarbamoylase, hydrolase; 2.50A {Mycoplasma
penetrans} PDB: 4anf_A
Length = 365
Score = 26.1 bits (58), Expect = 2.2
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 33 HYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHYNKG 92
H++ + ++ ++ M +NL + SL ++ V +++L+ K
Sbjct: 7 HHHHHHSSGHIDDDDKHMPVNLKGR---SLDSLLNFTTE------EVQHLIDLSIDLKKA 57
Query: 93 K 93
K
Sbjct: 58 K 58
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.0 bits (57), Expect = 2.4
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 19 QKHSVQALIHGLNRHYYSISINYRKNELEQKMLLN 53
K +I+ N+ + S +ELE+ + L+
Sbjct: 1486 YKFFHNGMIY--NKLFVSKEHAPYTDELEEDVYLD 1518
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.6 bits (53), Expect = 6.6
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 18 LQKHSVQALIHGLNRH-----YYSIS-INYRKN 44
L + VQ ++ N H IS +N KN
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
>1jqk_A CODH, carbon monoxide dehydrogenase; rossmann fold, oxidoreductase;
2.80A {Rhodospirillum rubrum} SCOP: e.26.1.2
Length = 639
Score = 24.5 bits (53), Expect = 6.7
Identities = 11/77 (14%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 7 EPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQ 66
+P + +NLG +++ +V ++G N I + + ++ + +G+++
Sbjct: 242 QPVVSAANLGVMKRGAVNIAVNGHNPMLSDIICDVAADLRDEAI-----AAGAAEGINI- 295
Query: 67 DYNEHCKLNEGTVNDML 83
C T ++++
Sbjct: 296 -IGICC-----TGHEVM 306
>1su8_A CODH 2, carbon monoxide dehydrogenase 2; nickel, cluster C,
oxidoreductase; HET: NFS; 1.10A {Carboxydothermus
hydrogenoformans} SCOP: e.26.1.2 PDB: 1su6_A* 1su7_A*
1suf_A* 2yiv_X* 3b51_X 3b52_X 3b53_X 3i39_X
Length = 636
Score = 24.6 bits (53), Expect = 7.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 7 EPRQTTSNLGHLQKHSVQALIHG 29
P T SNLG L+ +V +HG
Sbjct: 238 APVVTESNLGVLKADAVNVAVHG 260
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 24.2 bits (53), Expect = 7.5
Identities = 5/17 (29%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 77 GTVNDMLELAKHYNKGK 93
T+ + E KH+ + K
Sbjct: 129 TTLK-LYERLKHFKRLK 144
>1oao_A CODH, carbon monoxide dehydrogenase/acetyl-COA synthase beta;
oxidoreductase-transferase complex, electron transfer,
oxidoreductase; 1.90A {Moorella thermoacetica} SCOP:
e.26.1.2 PDB: 1mjg_A 2z8y_A 3i01_A 3i04_A
Length = 674
Score = 24.2 bits (52), Expect = 8.6
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 7 EPRQTTSNLGHLQKHSVQALIHG 29
+P + +N+G L V ++HG
Sbjct: 260 QPVVSEANMGVLDPDQVNFVLHG 282
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.388
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,345,002
Number of extensions: 62458
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 23
Length of query: 95
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 33
Effective length of database: 4,970,691
Effective search space: 164032803
Effective search space used: 164032803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)