RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15739
         (95 letters)



>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
           {Rhodospirillum rubrum [TaxId: 1085]}
          Length = 610

 Score = 25.2 bits (55), Expect = 1.5
 Identities = 11/78 (14%), Positives = 33/78 (42%), Gaps = 12/78 (15%)

Query: 6   QEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSL 65
            +P  + +NLG +++ +V   ++G N     I  +   +  ++ +          +G+++
Sbjct: 214 PQPVVSAANLGVMKRGAVNIAVNGHNPMLSDIICDVAADLRDEAI-----AAGAAEGINI 268

Query: 66  QDYNEHCKLNEGTVNDML 83
                 C     T ++++
Sbjct: 269 --IGICC-----TGHEVM 279


>d1sr9a3 d.270.1.1 (A:492-643) 2-isopropylmalate synthase LeuA,
           allosteric (dimerisation) domain {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 152

 Score = 24.3 bits (52), Expect = 2.7
 Identities = 4/11 (36%), Positives = 9/11 (81%)

Query: 22  SVQALIHGLNR 32
           S++A++  +NR
Sbjct: 140 SLRAVVSAVNR 150


>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase
           (KARI) {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 182

 Score = 24.0 bits (52), Expect = 3.0
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 17  HLQKHSVQALIHGLNRHYYSISI 39
           +L+K +  A  HG + HY  +  
Sbjct: 96  NLKKGATLAFAHGFSIHYNQVVP 118


>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
           {Carboxydothermus hydrogenoformans [TaxId: 129958]}
          Length = 633

 Score = 24.4 bits (53), Expect = 3.0
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 7   EPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQK 49
            P  T SNLG L+  +V   +HG N     I ++  K E+E +
Sbjct: 235 APVVTESNLGVLKADAVNVAVHGHNPVLSDIIVSVSK-EMENE 276


>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
           (aminotransferase) {Synechococcus sp., strain GR6
           [TaxId: 1131]}
          Length = 427

 Score = 23.3 bits (49), Expect = 8.1
 Identities = 6/49 (12%), Positives = 17/49 (34%)

Query: 12  TSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
            +  GH     ++AL   + +     +    +N L + +   +     +
Sbjct: 63  PAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMV 111


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0475    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 331,497
Number of extensions: 12430
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 9
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)