BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1574
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|B Chain B, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|C Chain C, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|D Chain D, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
Length = 520
Score = 107 bits (268), Expect = 1e-24, Method: Composition-based stats.
Identities = 56/115 (48%), Positives = 74/115 (64%), Gaps = 6/115 (5%)
Query: 8 PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEP 67
P+ GW E DP EI Q V +T+ AIEK G++ +DI +GITNQRET VVWD TG+P
Sbjct: 62 PKSGWVEHDPEEIWQTVVSTVKEAIEK---SGITANDIAAIGITNQRETVVVWDRETGKP 118
Query: 68 LYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNV 122
++NAIVW D R D++ K +K ++K GL + PYFS KL+WL+ NV
Sbjct: 119 IHNAIVWQDRRTAAFCDKLKKK--GLEKTFVKKT-GLLLDPYFSGTKLNWLLSNV 170
>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
pdb|2D4W|B Chain B, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
Length = 504
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 73/119 (61%), Gaps = 6/119 (5%)
Query: 6 ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 65
I P+ GW E +P +I V+ + A L+ L+ +DI +GITNQRET VVWD TG
Sbjct: 36 IFPRAGWVEHNPEQIWNNVREVVGLA---LTRGNLTHEDIAAVGITNQRETAVVWDKTTG 92
Query: 66 EPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124
+P+YNAIVW DTR IVD++ D+ + K I GLP++ YFS K+ W++ NV
Sbjct: 93 KPVYNAIVWQDTRTQKIVDELGG---DEGAEKYKSIVGLPLATYFSGPKIKWILDNVEG 148
>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLB|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLC|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLD|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLE|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate
Length = 501
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 61
+ I P+ GW E DPMEI +T+ +E L+ +S D I +GITNQRETT+VW+
Sbjct: 34 EFEQIYPKPGWVEHDPMEIWATQSSTL---VEVLAKADISSDQIAAIGITNQRETTIVWE 90
Query: 62 LNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQN 121
TG+P+YNAIVW R I + + D +DY++ GL + PYFS K+ W++ +
Sbjct: 91 KETGKPIYNAIVWQCRRTAEICEHLK---RDGLEDYIRSNTGLVIDPYFSGTKVKWILDH 147
Query: 122 VSS 124
V
Sbjct: 148 VEG 150
>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 61
+ I P+ GW E DPMEI +T+ +E L+ +S D I +GITNQRETT+VW+
Sbjct: 34 EFEQIYPKPGWVEHDPMEIWATQSSTL---VEVLTKADISSDQIAAIGITNQRETTIVWE 90
Query: 62 LNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQN 121
TG+P+YNAIVW R I + + D +DY++ GL + PYFS K+ W++ +
Sbjct: 91 KETGKPIYNAIVWQCRRTAEICEHLK---RDGLEDYIRSNTGLVIDPYFSGTKVKWILDH 147
Query: 122 VSS 124
V
Sbjct: 148 VEG 150
>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|B Chain B, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|E Chain E, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|G Chain G, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|C Chain C, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|D Chain D, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|F Chain F, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|H Chain H, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
Length = 526
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 61
+ I P+ GW E DPMEI +T+ +E L+ +S D I +GITNQRETT+VW+
Sbjct: 34 EFEQIYPKPGWVEHDPMEIWATQSSTL---VEVLAKADISSDQIAAIGITNQRETTIVWE 90
Query: 62 LNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQN 121
TG+P+YNAIVW R I + + D +DY++ GL + PYFS K+ W++ +
Sbjct: 91 KETGKPIYNAIVWQCRRTAEICEHLK---RDGLEDYIRSNTGLVIDPYFSGTKVKWILDH 147
Query: 122 VSS 124
V
Sbjct: 148 VEG 150
>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 61
+ I P+ GW E DPMEI T+ +E L+ +S D I +GITNQRETT+VW+
Sbjct: 34 EFEQIYPKPGWVEHDPMEIWATQSWTL---VEVLAKADISSDQIAAIGITNQRETTIVWE 90
Query: 62 LNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQN 121
TG+P+YNAIVW R I + + D +DY++ GL + PYFS K+ W++ +
Sbjct: 91 KETGKPIYNAIVWQCRRTAEICEHLK---RDGLEDYIRSNTGLVIDPYFSGTKVKWILDH 147
Query: 122 VSS 124
V
Sbjct: 148 VEG 150
>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
pdb|2DPN|B Chain B, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
Length = 495
Score = 98.2 bits (243), Expect = 9e-22, Method: Composition-based stats.
Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 14/119 (11%)
Query: 8 PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEP 67
P+ GW E DP+EI + TT+ A E L G +++ LGITNQRETT++WD TG+P
Sbjct: 38 PKPGWVEHDPLEIWE---TTLWAAREVLRRAGAEAGEVLALGITNQRETTLLWDRKTGKP 94
Query: 68 LYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPI----CGLPVSPYFSALKLSWLIQNV 122
L+NAIVW D R + + + AK L+P+ GL PYFS KL WL++NV
Sbjct: 95 LHNAIVWQDRRTTPLCEALRAK-------GLEPLFRERTGLLFDPYFSGTKLVWLLENV 146
>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|C Chain C, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|D Chain D, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
Length = 503
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 11 GWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYN 70
GW E DP+EI+ + M+ I+ L S I +GITNQRET ++WD TG+PLYN
Sbjct: 43 GWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVI-IKCIGITNQRETVIIWDRITGKPLYN 101
Query: 71 AIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQN 121
AIVW DTR + +V + AK+ + D ++ G + YFSA K+ WLIQN
Sbjct: 102 AIVWLDTRVEELVTEFSAKYNNND---IQKKTGTYFNTYFSAFKILWLIQN 149
>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
pdb|2W41|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
Length = 507
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 11 GWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYN 70
GW E DP+EI+ + M+ I+ L S I +GITNQRET ++WD TG+PLYN
Sbjct: 47 GWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVI-IKCIGITNQRETVIIWDRITGKPLYN 105
Query: 71 AIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQN 121
AIVW DTR + +V + AK+ + D ++ G + YFSA K+ WLIQN
Sbjct: 106 AIVWLDTRVEELVTEFSAKYNNND---IQKKTGTYFNTYFSAFKILWLIQN 153
>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
pdb|3FLC|X Chain X, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
Length = 518
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 8 PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEP 67
P+ GW E + EI +VQ+ + A + G+ + I +GITNQRETTVVWD TG+P
Sbjct: 53 PKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRPEAIAGIGITNQRETTVVWDKTTGQP 109
Query: 68 LYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124
+ NAIVW ++ I DQ+ D + + GL + YFSA K+ WL+ N+
Sbjct: 110 IANAIVWQSRQSSPIADQLKV---DGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEG 163
>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
pdb|3D7E|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
Length = 505
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 8 PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEP 67
P+ GW E + EI +VQ+ + A + G+ + I +GITNQRETTVVWD TG+P
Sbjct: 40 PKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRPEAIAGIGITNQRETTVVWDKTTGQP 96
Query: 68 LYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124
+ NAIVW ++ I DQ+ D + + GL + YFSA K+ WL+ N+
Sbjct: 97 IANAIVWQSRQSSPIADQLKV---DGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEG 150
>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase
pdb|1R59|X Chain X, Enterococcus Casseliflavus Glycerol Kinase
Length = 505
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 8 PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEP 67
P+ GW E + EI +VQ+ + A + G+ + I +GITNQRETTVVWD TG+P
Sbjct: 40 PKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRPEAIAGIGITNQRETTVVWDKTTGQP 96
Query: 68 LYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124
+ NAIVW ++ I DQ+ D + + GL + YFSA K+ WL+ N+
Sbjct: 97 IANAIVWQSRQSSPIADQLKV---DGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEG 150
>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|O Chain O, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|C Chain C, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|D Chain D, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H46|X Chain X, Glycerol Kinase H232e With Glycerol
pdb|3H46|O Chain O, Glycerol Kinase H232e With Glycerol
Length = 506
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 8 PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEP 67
P+ GW E + EI +VQ+ + A + G+ + I +GITNQRETTVVWD TG+P
Sbjct: 41 PKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRPEAIAGIGITNQRETTVVWDKTTGQP 97
Query: 68 LYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124
+ NAIVW ++ I DQ+ D + + GL + YFSA K+ WL+ N+
Sbjct: 98 IANAIVWQSRQSSPIADQLKV---DGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEG 151
>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol
pdb|3H3N|O Chain O, Glycerol Kinase H232r With Glycerol
pdb|3H3O|O Chain O, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|X Chain X, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|B Chain B, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|C Chain C, Glycerol Kinase H232r With Ethylene Glycol
Length = 506
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 8 PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEP 67
P+ GW E + EI +VQ+ + A + G+ + I +GITNQRETTVVWD TG+P
Sbjct: 41 PKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRPEAIAGIGITNQRETTVVWDKTTGQP 97
Query: 68 LYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124
+ NAIVW ++ I DQ+ D + + GL + YFSA K+ WL+ N+
Sbjct: 98 IANAIVWQSRQSSPIADQLKV---DGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEG 151
>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
pdb|1XUP|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
Length = 487
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 8 PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEP 67
P+ GW E + EI +VQ+ + A + G+ + I +GITNQRETTVVWD TG+P
Sbjct: 36 PKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRPEAIAGIGITNQRETTVVWDKTTGQP 92
Query: 68 LYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124
+ NAIVW ++ I DQ+ D + + GL + YFSA K+ WL+ N+
Sbjct: 93 IANAIVWQSRQSSPIADQLKV---DGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEG 146
>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|B Chain B, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|C Chain C, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|D Chain D, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3GE1|A Chain A, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|B Chain B, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|C Chain C, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|D Chain D, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
Length = 501
Score = 84.3 bits (207), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 8 PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEP 67
PQ GW E D EI +V E ++ + + D I +GITNQRETTVVWD +TG P
Sbjct: 42 PQSGWVEHDANEIWTSVLAV---XTEVINENDVRADQIAGIGITNQRETTVVWDKHTGRP 98
Query: 68 LYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNV 122
+Y+AIVW + +I ++ + +Q + GL + PYF+ K+ W++ NV
Sbjct: 99 IYHAIVWQSRQTQSICSELKQQGYEQT---FRDKTGLLLDPYFAGTKVKWILDNV 150
>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
pdb|2ZF5|Y Chain Y, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
Length = 497
Score = 81.3 bits (199), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 8 PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEP 67
P+ GW E +P EI A + AI+ + + I +G+TNQRETT+VWD + G+P
Sbjct: 39 PRPGWVEHNPEEIWDAQLRAIKDAIQSAR---IEPNQIAAIGVTNQRETTLVWDKD-GKP 94
Query: 68 LYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNV 122
LYNAIVW R +V+++ ++ +K GL YFSA KL WL+ NV
Sbjct: 95 LYNAIVWQCRRTAEMVEEIKREY----GTMIKEKTGLVPDAYFSASKLKWLLDNV 145
>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2ITM|B Chain B, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2NLX|A Chain A, Crystal Structure Of The Apo E. Coli Xylulose Kinase
pdb|2NLX|B Chain B, Crystal Structure Of The Apo E. Coli Xylulose Kinase
Length = 484
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 3 ISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLS-AHGLSRDDIVTLGITNQRETTVVWD 61
++ P W+EQDP + QA DRA++ L H L D+ LGI Q + D
Sbjct: 31 LTVSRPHPLWSEQDPEQWWQAT----DRAMKALGDQHSL--QDVKALGIAGQMHGATLLD 84
Query: 62 LNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQN 121
L AI+W+D R + A+ P + I G + P F+A KL W+ ++
Sbjct: 85 AQQ-RVLRPAILWNDGRCAQECTLLEARVPQS-----RVITGNLMMPGFTAPKLLWVQRH 138
>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus
Acidophilus
pdb|3LL3|A Chain A, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
pdb|3LL3|B Chain B, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
Length = 504
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 6 ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 65
I + G AE+DP I AVQ + +K+ I + ++Q + + +
Sbjct: 38 IQTKVGQAEEDPKLIFDAVQEIIFDLTQKIDGK------IAAISWSSQXHSLIGLGSDD- 90
Query: 66 EPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPI---CGLPVSPYFSALKLSWL 118
E L N+I W+D A +IV +++ + + I G P P KL WL
Sbjct: 91 ELLTNSITWADNCAKSIVQDA------KNRGFAQQIYRKTGXPXHPXAPIYKLLWL 140
>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|B Chain B, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|C Chain C, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|D Chain D, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|E Chain E, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|F Chain F, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
Length = 423
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 11 GWAEQDPMEILQAVQTTMDRAIEKL 35
G E+D +++L++ QT + +A+EKL
Sbjct: 8 GHTEEDKLDVLKSTQTVIHKALEKL 32
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 13/63 (20%)
Query: 59 VWDLNTGEPLYNAIVWSDTRADNIVDQVLAK--------FPDQDKDYLKP-----ICGLP 105
+WD G+ IV D ADN+ Q+L + P+ + DYL I GL
Sbjct: 256 LWDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLG 315
Query: 106 VSP 108
++P
Sbjct: 316 IAP 318
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 19 EILQAVQTTMDRAI--EKLSAHGLSRDD 44
EIL Q D A+ E++ AHGLS +D
Sbjct: 408 EILSGAQRIHDHALLQERMKAHGLSPED 435
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 19 EILQAVQTTMDRAI--EKLSAHGLSRDD 44
EIL Q D A+ E++ AHGLS +D
Sbjct: 411 EILSGAQRIHDHALLQERMKAHGLSPED 438
>pdb|1RDI|1 Chain 1, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-L-Fucopyranoside
pdb|1RDI|2 Chain 2, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-L-Fucopyranoside
pdb|1RDJ|1 Chain 1, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Beta-Methyl-L-Fucopyranoside
pdb|1RDJ|2 Chain 2, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Beta-Methyl-L-Fucopyranoside
pdb|1RDK|1 Chain 1, Mannose-binding Protein, Subtilisin Digest Fragment
Complex With D-galactose
pdb|1RDK|2 Chain 2, Mannose-binding Protein, Subtilisin Digest Fragment
Complex With D-galactose
pdb|1RDL|1 Chain 1, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-D-Mannopyranoside (0.2 M)
pdb|1RDL|2 Chain 2, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-D-Mannopyranoside (0.2 M)
pdb|1RDM|1 Chain 1, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-D-Mannopyranoside (1.3 M)
pdb|1RDM|2 Chain 2, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-D-Mannopyranoside (1.3 M)
pdb|1RDN|1 Chain 1, Mannose-binding Protein, Subtilisin Digest Fragment
Complex With Alpha-methyl-d-n-acetylglucosaminide
pdb|1RDN|2 Chain 2, Mannose-binding Protein, Subtilisin Digest Fragment
Complex With Alpha-methyl-d-n-acetylglucosaminide
pdb|1RDO|1 Chain 1, Mannose-Binding Protein, Subtilisin Digest Fragment
pdb|1RDO|2 Chain 2, Mannose-Binding Protein, Subtilisin Digest Fragment
Length = 113
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 21 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRAD 80
LQ T A E + +++D + LGIT+QR V DL Y W++ +
Sbjct: 23 LQGTVATPRNAEENRAIQNVAKD-VAFLGITDQRTENVFEDLTGNRVRYTN--WNEGEPN 79
Query: 81 NI 82
N+
Sbjct: 80 NV 81
>pdb|1BV4|A Chain A, Apo-Mannose-Binding Protein-C
pdb|1BV4|B Chain B, Apo-Mannose-Binding Protein-C
pdb|1BV4|C Chain C, Apo-Mannose-Binding Protein-C
pdb|1BV4|D Chain D, Apo-Mannose-Binding Protein-C
Length = 118
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 21 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRAD 80
LQ T A E + +++D + LGIT+QR V DL Y W++ +
Sbjct: 28 LQGTVATPRNAEENRAIQNVAKD-VAFLGITDQRTENVFEDLTGNRVRYTN--WNEGEPN 84
Query: 81 NI 82
N+
Sbjct: 85 NV 86
>pdb|1KZA|1 Chain 1, Complex Of Mbp-C And Man-A13-Man
pdb|1KZA|2 Chain 2, Complex Of Mbp-C And Man-A13-Man
pdb|1KZB|1 Chain 1, Complex Of Mbp-C And Trimannosyl Core
pdb|1KZB|2 Chain 2, Complex Of Mbp-C And Trimannosyl Core
pdb|1KZC|1 Chain 1, Complex Of Mbp-c And High-affinity Linear Trimannose
pdb|1KZC|2 Chain 2, Complex Of Mbp-c And High-affinity Linear Trimannose
pdb|1KZD|1 Chain 1, Complex Of Mbp-C And Glcnac-Terminated Core
pdb|1KZD|2 Chain 2, Complex Of Mbp-C And Glcnac-Terminated Core
pdb|1KZE|1 Chain 1, Complex Of Mbp-C And Bivalent Man-Terminated
Glycopeptide
pdb|1KZE|2 Chain 2, Complex Of Mbp-C And Bivalent Man-Terminated
Glycopeptide
Length = 115
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 21 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRAD 80
LQ T A E + +++D + LGIT+QR V DL Y W++ +
Sbjct: 26 LQGTVATPRNAEENRAIQNVAKD-VAFLGITDQRTENVFEDLTGNRVRYTN--WNEGEPN 82
Query: 81 NI 82
N+
Sbjct: 83 NV 84
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2DHT|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2E0C|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E0C|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E5M|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
pdb|2E5M|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
Length = 409
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 61 DLNTGEPLYNAIVWSDTRADNIVDQVLAK--------FPDQDKDYLKPICG 103
++N G+P I+ +D ADN+ Q++ + P+ + DY+ G
Sbjct: 255 EINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAG 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,759,979
Number of Sequences: 62578
Number of extensions: 139449
Number of successful extensions: 397
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 31
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)