Query psy1574
Match_columns 124
No_of_seqs 122 out of 1010
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 20:10:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0554 GlpK Glycerol kinase [ 100.0 2.8E-29 6E-34 188.6 11.3 116 2-123 35-150 (499)
2 PF00370 FGGY_N: FGGY family o 100.0 9.1E-29 2E-33 175.6 11.2 116 2-124 30-145 (245)
3 PLN02295 glycerol kinase 100.0 1.4E-28 2.9E-33 190.6 12.2 118 2-124 30-152 (512)
4 COG1070 XylB Sugar (pentulose 100.0 1.6E-28 3.4E-33 189.9 10.9 116 2-124 35-150 (502)
5 PRK00047 glpK glycerol kinase; 100.0 6.5E-28 1.4E-32 186.3 12.1 117 2-124 35-151 (498)
6 PTZ00294 glycerol kinase-like 100.0 8.1E-28 1.7E-32 186.0 12.2 118 2-124 32-151 (504)
7 TIGR02628 fuculo_kin_coli L-fu 99.9 1.4E-27 3.1E-32 183.1 11.6 112 4-124 35-146 (465)
8 PRK10331 L-fuculokinase; Provi 99.9 2E-27 4.4E-32 182.4 11.9 111 5-124 37-147 (470)
9 TIGR01234 L-ribulokinase L-rib 99.9 3.1E-27 6.7E-32 183.9 10.7 111 9-124 50-171 (536)
10 TIGR01311 glycerol_kin glycero 99.9 1E-26 2.2E-31 179.5 12.0 117 2-124 31-147 (493)
11 TIGR01315 5C_CHO_kinase FGGY-f 99.9 6.2E-27 1.3E-31 182.4 10.6 113 2-124 30-151 (541)
12 TIGR01314 gntK_FGGY gluconate 99.9 1.7E-26 3.6E-31 178.7 12.6 115 2-124 30-144 (505)
13 PRK15027 xylulokinase; Provisi 99.9 1.2E-26 2.6E-31 178.7 10.9 112 2-124 30-141 (484)
14 TIGR02627 rhamnulo_kin rhamnul 99.9 3.1E-26 6.7E-31 175.2 11.4 111 3-124 33-143 (454)
15 PRK04123 ribulokinase; Provisi 99.9 3.4E-26 7.3E-31 178.5 11.1 114 6-124 44-169 (548)
16 PRK10640 rhaB rhamnulokinase; 99.9 5.5E-25 1.2E-29 169.1 11.2 107 7-124 25-131 (471)
17 PLN02669 xylulokinase 99.9 2.2E-24 4.7E-29 168.5 10.7 113 6-124 45-186 (556)
18 PRK10939 autoinducer-2 (AI-2) 99.9 4.6E-24 9.9E-29 165.7 11.9 111 7-124 40-150 (520)
19 TIGR01312 XylB D-xylulose kina 99.9 7.5E-23 1.6E-27 157.2 11.8 116 2-124 28-143 (481)
20 KOG2517|consensus 99.9 6E-23 1.3E-27 156.9 9.7 122 2-124 37-158 (516)
21 COG1069 AraB Ribulose kinase [ 99.9 6.7E-22 1.4E-26 150.7 10.0 113 2-124 34-155 (544)
22 KOG2531|consensus 99.0 1.1E-09 2.3E-14 83.1 7.0 107 11-124 59-186 (545)
23 TIGR00241 CoA_E_activ CoA-subs 97.0 0.00093 2E-08 47.7 3.6 46 12-60 25-70 (248)
24 PF07736 CM_1: Chorismate muta 89.3 1.2 2.7E-05 28.4 4.7 37 15-54 13-49 (118)
25 cd02185 AroH Chorismate mutase 86.0 1.9 4.2E-05 27.4 4.2 37 15-54 13-49 (117)
26 TIGR01796 CM_mono_aroH monofun 85.9 1.9 4.2E-05 27.4 4.1 37 15-54 13-49 (117)
27 COG0081 RplA Ribosomal protein 72.5 12 0.00026 26.7 5.0 51 11-62 177-227 (228)
28 TIGR00744 ROK_glcA_fam ROK fam 72.1 21 0.00045 26.1 6.5 37 15-54 31-67 (318)
29 PTZ00397 macrophage migration 70.9 23 0.00049 22.1 6.5 94 1-108 1-95 (116)
30 PHA02754 hypothetical protein; 68.2 17 0.00036 20.3 3.9 40 21-62 13-52 (67)
31 PRK13690 hypothetical protein; 68.1 15 0.00033 25.2 4.6 44 16-62 2-45 (184)
32 COG1647 Esterase/lipase [Gener 62.6 16 0.00035 26.2 4.0 34 12-51 60-93 (243)
33 CHL00129 rpl1 ribosomal protei 58.1 30 0.00066 24.7 4.9 51 11-62 175-225 (229)
34 COG1614 CdhC CO dehydrogenase/ 56.1 43 0.00094 25.6 5.5 65 16-82 154-225 (470)
35 cd02903 Macro_BAL_like Macro d 50.7 23 0.00049 22.8 3.1 48 6-62 76-123 (137)
36 COG4401 AroH Chorismate mutase 50.2 54 0.0012 20.8 4.5 37 15-54 15-51 (125)
37 PRK09585 anmK anhydro-N-acetyl 47.8 39 0.00086 25.9 4.3 30 21-53 70-99 (365)
38 PTZ00225 60S ribosomal protein 46.7 61 0.0013 22.9 4.9 42 11-55 167-208 (214)
39 KOG0833|consensus 46.1 95 0.0021 21.3 5.6 51 16-72 20-70 (173)
40 COG2236 Predicted phosphoribos 45.9 36 0.00077 23.7 3.5 38 21-58 9-46 (192)
41 PF05378 Hydant_A_N: Hydantoin 44.5 14 0.0003 25.1 1.3 44 16-62 31-74 (176)
42 PF02208 Sorb: Sorbin homologo 43.2 21 0.00045 18.8 1.5 30 53-88 5-34 (47)
43 PF02801 Ketoacyl-synt_C: Beta 43.2 36 0.00079 21.1 3.1 23 24-49 27-49 (119)
44 TIGR01169 rplA_bact ribosomal 43.0 76 0.0016 22.6 4.9 51 11-62 174-224 (227)
45 PTZ00029 60S ribosomal protein 42.8 69 0.0015 22.5 4.7 42 11-55 169-210 (216)
46 COG4820 EutJ Ethanolamine util 42.4 62 0.0013 23.1 4.3 42 47-89 31-84 (277)
47 PF12690 BsuPI: Intracellular 41.7 15 0.00032 21.8 1.0 27 50-80 21-47 (82)
48 PRK04203 rpl1P 50S ribosomal p 41.2 93 0.002 21.8 5.1 45 11-58 167-211 (215)
49 PF01011 PQQ: PQQ enzyme repea 40.5 47 0.001 16.1 2.8 22 48-69 3-24 (38)
50 PF03799 FtsQ: Cell division p 40.2 37 0.00079 20.5 2.7 22 48-70 1-22 (117)
51 COG0533 QRI7 Metal-dependent p 39.9 46 0.001 25.3 3.6 37 14-53 44-80 (342)
52 PRK09557 fructokinase; Reviewe 39.5 1.1E+02 0.0025 22.1 5.6 33 15-54 34-66 (301)
53 PF14239 RRXRR: RRXRR protein 39.3 18 0.00038 24.9 1.2 14 58-72 2-15 (176)
54 PRK08561 rps15p 30S ribosomal 38.2 26 0.00056 23.4 1.8 50 4-72 17-66 (151)
55 PRK05424 rplA 50S ribosomal pr 37.3 1.1E+02 0.0023 21.9 5.0 51 11-62 175-225 (230)
56 cd00307 RuBisCO_small_like Rib 37.1 93 0.002 18.6 5.0 35 15-58 42-76 (84)
57 PLN02587 L-galactose dehydroge 36.1 51 0.0011 24.2 3.4 13 43-55 144-156 (314)
58 PRK09698 D-allose kinase; Prov 36.1 1.7E+02 0.0036 21.2 6.1 28 21-54 44-71 (302)
59 PF03702 UPF0075: Uncharacteri 35.4 77 0.0017 24.3 4.2 35 21-60 67-101 (364)
60 PRK11172 dkgB 2,5-diketo-D-glu 35.3 55 0.0012 23.4 3.3 13 43-55 121-133 (267)
61 PTZ00249 variable surface prot 35.1 26 0.00057 28.0 1.7 51 13-72 415-465 (516)
62 PF13986 DUF4224: Domain of un 34.9 64 0.0014 16.9 2.7 23 95-121 5-27 (47)
63 TIGR02261 benz_CoA_red_D benzo 34.3 83 0.0018 23.0 4.1 34 21-57 41-74 (262)
64 PF14574 DUF4445: Domain of un 34.0 86 0.0019 24.5 4.3 45 18-62 56-104 (412)
65 PF00814 Peptidase_M22: Glycop 33.2 58 0.0013 23.6 3.2 30 21-53 30-59 (268)
66 PF04260 DUF436: Protein of un 33.1 71 0.0015 21.8 3.3 29 23-54 2-30 (172)
67 PF10881 DUF2726: Protein of u 33.0 47 0.001 20.8 2.4 52 50-106 53-104 (126)
68 COG2869 NqrC Na+-transporting 32.2 35 0.00075 24.7 1.8 31 45-77 145-175 (264)
69 TIGR03192 benz_CoA_bzdQ benzoy 32.0 82 0.0018 23.4 3.8 35 22-59 68-102 (293)
70 PRK13310 N-acetyl-D-glucosamin 31.5 2E+02 0.0044 20.8 5.9 33 15-54 34-66 (303)
71 PLN02709 nudix hydrolase 30.2 1.6E+02 0.0035 21.0 4.9 44 24-76 84-127 (222)
72 TIGR00316 cdhC CO dehydrogenas 30.1 1.4E+02 0.0031 23.6 4.8 67 15-83 151-224 (458)
73 cd06660 Aldo_ket_red Aldo-keto 29.6 92 0.002 22.1 3.7 12 43-54 140-151 (285)
74 COG2377 Predicted molecular ch 29.4 78 0.0017 24.4 3.4 31 20-53 71-101 (371)
75 COG0400 Predicted esterase [Ge 29.3 1.4E+02 0.0029 20.9 4.4 38 15-52 71-108 (207)
76 PF11760 CbiG_N: Cobalamin syn 28.6 77 0.0017 18.9 2.6 36 55-91 39-74 (84)
77 PF14433 SUKH-3: SUKH-3 immuni 28.3 1.7E+02 0.0036 18.8 6.2 27 42-69 90-116 (142)
78 cd02905 Macro_GDAP2_like Macro 27.8 1.4E+02 0.0029 19.4 4.0 47 10-61 78-124 (140)
79 PF00101 RuBisCO_small: Ribulo 27.3 1.6E+02 0.0034 18.2 5.1 35 13-56 54-88 (99)
80 KOG3441|consensus 27.3 53 0.0011 21.2 1.8 16 56-72 106-121 (149)
81 PF14567 SUKH_5: SMI1-KNR4 cel 27.3 1.8E+02 0.004 18.9 4.7 40 24-75 71-110 (132)
82 cd00403 Ribosomal_L1 Ribosomal 26.4 2E+02 0.0043 19.7 4.8 43 11-55 161-203 (208)
83 KOG2044|consensus 26.4 1.4E+02 0.0031 25.6 4.5 45 4-53 61-105 (931)
84 PF01890 CbiG_C: Cobalamin syn 25.9 1.3E+02 0.0027 19.1 3.5 31 16-53 13-43 (121)
85 PF11248 DUF3046: Protein of u 25.9 61 0.0013 18.3 1.8 14 15-28 44-57 (63)
86 cd03084 phosphohexomutase The 25.8 1.7E+02 0.0036 21.9 4.6 24 46-70 177-200 (355)
87 PRK01546 hypothetical protein; 25.8 19 0.0004 21.4 -0.4 21 50-71 45-65 (79)
88 TIGR03286 methan_mark_15 putat 25.4 90 0.002 24.4 3.1 36 21-59 178-213 (404)
89 PRK09542 manB phosphomannomuta 25.0 1.7E+02 0.0037 22.8 4.7 24 46-70 229-252 (445)
90 PF05381 Peptidase_C21: Tymovi 24.9 37 0.00079 21.2 0.8 17 14-30 15-31 (104)
91 cd03330 Macro_2 Macro domain, 24.8 1.1E+02 0.0023 19.4 3.0 20 43-62 102-121 (133)
92 PRK02539 hypothetical protein; 24.7 21 0.00046 21.4 -0.3 21 50-71 44-64 (85)
93 TIGR01440 conserved hypothetic 24.4 1.1E+02 0.0024 20.9 3.0 28 24-54 3-30 (172)
94 smart00732 YqgFc Likely ribonu 24.2 1.6E+02 0.0034 17.1 4.4 41 45-86 3-43 (99)
95 PF01043 SecA_PP_bind: SecA pr 24.1 48 0.001 20.9 1.3 48 19-77 60-107 (113)
96 PF08887 GAD-like: GAD-like do 23.8 1.9E+02 0.0042 18.0 4.2 49 12-67 53-101 (109)
97 cd02960 AGR Anterior Gradient 23.5 66 0.0014 20.8 1.8 25 54-79 80-104 (130)
98 PF06228 ChuX_HutX: Haem utili 23.3 1.6E+02 0.0035 19.4 3.6 35 42-77 85-125 (141)
99 PTZ00340 O-sialoglycoprotein e 23.3 97 0.0021 23.6 2.9 31 21-54 50-80 (345)
100 COG0656 ARA1 Aldo/keto reducta 23.1 1.4E+02 0.003 22.1 3.7 46 43-88 133-180 (280)
101 PF11576 DUF3236: Protein of u 22.4 54 0.0012 21.8 1.2 26 47-73 101-126 (154)
102 KOG1577|consensus 22.1 1.2E+02 0.0026 22.7 3.2 30 15-56 135-164 (300)
103 cd03527 RuBisCO_small Ribulose 22.0 2.1E+02 0.0045 17.7 5.1 35 13-56 55-89 (99)
104 PF00687 Ribosomal_L1: Ribosom 21.9 1.5E+02 0.0032 20.5 3.5 41 11-54 176-217 (220)
105 cd00553 NAD_synthase NAD+ synt 21.9 1.8E+02 0.0038 20.6 4.0 37 16-58 2-38 (248)
106 smart00564 PQQ beta-propeller 21.9 98 0.0021 13.9 2.6 19 50-68 11-29 (33)
107 PF00986 DNA_gyraseB_C: DNA gy 21.7 45 0.00098 18.9 0.7 15 10-24 12-26 (65)
108 PF08368 FAST_2: FAST kinase-l 21.7 1.9E+02 0.0041 17.2 3.7 41 20-68 49-92 (93)
109 PF01869 BcrAD_BadFG: BadF/Bad 21.7 1.7E+02 0.0037 20.8 3.9 33 15-50 35-67 (271)
110 PRK09604 UGMP family protein; 21.7 1.1E+02 0.0023 23.0 2.9 29 21-52 52-80 (332)
111 cd01684 Tet_like_IV EF-G_domai 21.7 2.1E+02 0.0046 17.7 4.1 36 17-56 53-88 (115)
112 TIGR03722 arch_KAE1 universal 21.6 1.1E+02 0.0023 22.8 2.9 27 23-52 48-74 (322)
113 TIGR00329 gcp_kae1 metallohydr 21.6 1E+02 0.0023 22.7 2.8 29 21-52 49-77 (305)
114 KOG0180|consensus 21.6 1.8E+02 0.004 20.1 3.7 35 15-62 157-191 (204)
115 PRK01964 4-oxalocrotonate taut 21.5 1.1E+02 0.0024 16.6 2.3 30 20-52 16-45 (64)
116 PRK14878 UGMP family protein; 21.4 1E+02 0.0023 22.9 2.8 28 22-52 46-73 (323)
117 PF12860 PAS_7: PAS fold 21.2 60 0.0013 19.6 1.3 17 51-68 2-18 (115)
118 PF00480 ROK: ROK family; Int 21.1 2.5E+02 0.0054 18.3 4.9 53 15-79 30-83 (179)
119 PF08392 FAE1_CUT1_RppA: FAE1/ 21.0 1.5E+02 0.0032 22.1 3.4 28 21-51 84-111 (290)
120 cd02906 Macro_1 Macro domain, 21.0 2.1E+02 0.0046 18.6 3.9 36 17-61 99-134 (147)
121 PRK09912 L-glyceraldehyde 3-ph 21.0 1.6E+02 0.0034 22.0 3.7 13 43-55 160-172 (346)
122 PF02914 DDE_2: Bacteriophage 20.6 1E+02 0.0022 22.0 2.4 36 46-82 8-44 (219)
123 cd05805 MPG1_transferase GTP-m 20.6 2.6E+02 0.0057 21.6 4.9 24 46-70 231-254 (441)
124 PRK13311 N-acetyl-D-glucosamin 20.4 3.2E+02 0.0069 19.3 6.1 33 15-54 34-66 (256)
125 PF07745 Glyco_hydro_53: Glyco 20.4 1.9E+02 0.0042 21.8 4.0 34 10-43 94-127 (332)
126 cd00327 cond_enzymes Condensin 20.4 2.2E+02 0.0048 19.6 4.2 28 24-54 11-38 (254)
127 COG4989 Predicted oxidoreducta 20.3 1.4E+02 0.003 22.1 3.1 37 5-56 126-162 (298)
128 PF08149 BING4CT: BING4CT (NUC 20.2 1.5E+02 0.0034 17.6 2.8 49 41-91 19-72 (80)
129 PRK05416 glmZ(sRNA)-inactivati 20.2 2.2E+02 0.0048 20.9 4.2 38 17-55 220-257 (288)
130 COG4502 5'(3')-deoxyribonucleo 20.2 1.1E+02 0.0024 20.5 2.4 40 78-123 72-111 (180)
No 1
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=99.96 E-value=2.8e-29 Score=188.63 Aligned_cols=116 Identities=45% Similarity=0.880 Sum_probs=108.3
Q ss_pred CcccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccceeeeccCcHH
Q psy1574 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADN 81 (124)
Q Consensus 2 ~~~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~R~~~ 81 (124)
|++.++|+|||+||||.++|.++..++++++.+ +++.+.+|.+||||.|++++|+||+++|+|++|+|.|+|+|+.+
T Consensus 35 e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~---~~i~~~~iaaIGITNQRETtvvWdk~tG~Pi~naIvWQdrRTa~ 111 (499)
T COG0554 35 EFTQIYPQPGWVEHDPLEIWASVRSVLKEALAK---AGIKPGEIAAIGITNQRETTVVWDKETGKPIYNAIVWQDRRTAD 111 (499)
T ss_pred hhhhhCCCCCccccCHHHHHHHHHHHHHHHHHH---cCCCccceEEEEeeccceeEEEEeCCCCCCcccceeeeccchHH
Confidence 456789999999999999999999999999876 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccC
Q psy1574 82 IVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVS 123 (124)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P 123 (124)
.|+++++... .+.+.++||..+.++|++.|+.||.+|.|
T Consensus 112 ~c~~L~~~g~---~~~i~~kTGL~~dpYFSatKi~WiLdnv~ 150 (499)
T COG0554 112 ICEELKADGY---EERIREKTGLVLDPYFSATKIKWILDNVP 150 (499)
T ss_pred HHHHHHhcch---hhhhhhhcCCccCCCccchhhhHHHhhCh
Confidence 9999998722 46788899999999999999999999987
No 2
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=99.96 E-value=9.1e-29 Score=175.64 Aligned_cols=116 Identities=33% Similarity=0.582 Sum_probs=102.5
Q ss_pred CcccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccceeeeccCcHH
Q psy1574 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADN 81 (124)
Q Consensus 2 ~~~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~R~~~ 81 (124)
+++...+.+|+.||||++||+++++++++++++ .++++++|++|+||+|++++|++|+ +|+|++|+|+|+|+|+.+
T Consensus 30 ~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~I~aI~is~~~~~~v~~D~-~~~pl~~~i~w~D~R~~~ 105 (245)
T PF00370_consen 30 PYPYYTPEPGWAEQDPDEIWEAICEALKELLSQ---AGIDPEQIKAIGISGQGHGLVLLDK-DGKPLRPAILWMDTRAAE 105 (245)
T ss_dssp EETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHH---CTSCGGGEEEEEEEE-SSEEEEEET-TSSBSSCEE-TT-CTTHH
T ss_pred eeeeccccccccccChHHHHHHHHHHHHHHHhh---cCcccceeEEEEeccccCCcceecc-ccccccccccccccchhh
Confidence 456778889999999999999999999999986 4678899999999999999999999 699999999999999999
Q ss_pred HHHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 82 IVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
+++++.+... .+++++.||.++++.++++||+||++|+||
T Consensus 106 ~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~ 145 (245)
T PF00370_consen 106 EAEELNEEGS---PEEIYEKTGLPLSPGYPLAKLLWLKENEPE 145 (245)
T ss_dssp HHHHHHHHTH---HHHHHHHHSS-SSTTSHHHHHHHHHHHSHH
T ss_pred HHHHHHhhcC---cceeeeeccccccccchHHHHHHHHHhCch
Confidence 9999988654 588999999999999999999999999985
No 3
>PLN02295 glycerol kinase
Probab=99.96 E-value=1.4e-28 Score=190.60 Aligned_cols=118 Identities=47% Similarity=0.888 Sum_probs=104.4
Q ss_pred CcccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCC----eeeEEeecccceeEEe-eCCCCcccccceeeec
Q psy1574 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD----IVTLGITNQRETTVVW-DLNTGEPLYNAIVWSD 76 (124)
Q Consensus 2 ~~~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~----I~~i~is~~~~~~v~~-d~~~G~pl~p~i~w~D 76 (124)
+|++.+|++||+||||++||+++++++++++++ .++++++ |++||+|+|++|+++| |+ +|+||+|+|+|+|
T Consensus 30 ~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~---~~~~~~~i~~~i~aIg~s~q~~~~v~~dd~-~G~pl~~~i~w~D 105 (512)
T PLN02295 30 EFTQIYPQAGWVEHDPMEILESVLTCIAKALEK---AAAKGHNVDSGLKAIGITNQRETTVAWSKS-TGRPLYNAIVWMD 105 (512)
T ss_pred cccccCCCCCcEeeCHHHHHHHHHHHHHHHHHH---cCCCccccccceEEEEEecCcceEEEEECC-CCCCcccceeccc
Confidence 577888999999999999999999999999986 3555666 7999999999999999 57 6999999999999
Q ss_pred cCcHHHHHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 77 TRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 77 ~R~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
.|+.++++++.+..++ ..+.++++||+++++.++++||+||++|+||
T Consensus 106 ~Ra~~~~~~l~~~~~~-~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~ 152 (512)
T PLN02295 106 SRTSSICRRLEKELSG-GRKHFVETCGLPISTYFSATKLLWLLENVDA 152 (512)
T ss_pred cchHHHHHHHHhhccc-hhHHHHHhhCCcCCcccHHHHHHHHHhcCHH
Confidence 9999999999876531 0245779999999999999999999999996
No 4
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.6e-28 Score=189.89 Aligned_cols=116 Identities=37% Similarity=0.620 Sum_probs=107.1
Q ss_pred CcccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccceeeeccCcHH
Q psy1574 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADN 81 (124)
Q Consensus 2 ~~~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~R~~~ 81 (124)
++...+|.+||+||||++||+++.+++++++++ ..++.++|.||+|||||+|++++|+ +|+||+|+|+|+|.|+.+
T Consensus 35 ~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~---~~~~~~~I~aI~is~~~~g~vllD~-~g~~L~~~i~w~D~R~~~ 110 (502)
T COG1070 35 ENPVSTPQPGWAEQDPDELWQAILEALRQLLEE---SKIDPDAIAAIGISGQGHGLVLLDA-NGEPLRPAILWNDTRAAE 110 (502)
T ss_pred cccccCCCCCCcccCHHHHHHHHHHHHHHHHHh---cccChhhceEEEEeccccceEEECC-CCCCccccceecchhhHH
Confidence 456777999999999999999999999999986 4578899999999999999999999 599999999999999999
Q ss_pred HHHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 82 IVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
+++++.+..+ .+.++..||..+++.++++||+|+++|+||
T Consensus 111 ~~~~l~~~~~---~~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~ 150 (502)
T COG1070 111 EVEELEERLG---GEALYARTGLQAMPGFTAPKLLWLKENEPD 150 (502)
T ss_pred HHHHHHhhcc---chhhhhhcCCCcCccccHHHHHHHHhcCcH
Confidence 9999999887 367777899999999999999999999996
No 5
>PRK00047 glpK glycerol kinase; Provisional
Probab=99.95 E-value=6.5e-28 Score=186.25 Aligned_cols=117 Identities=45% Similarity=0.865 Sum_probs=105.6
Q ss_pred CcccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccceeeeccCcHH
Q psy1574 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADN 81 (124)
Q Consensus 2 ~~~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~R~~~ 81 (124)
+|++.+|.+|++||||++||+++++++++++++ .++++++|.+||+|+|+++++++|+++|+|++|+|+|+|.|+.+
T Consensus 35 ~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~I~~Igis~~~~~~v~~D~~~G~pl~~~i~w~D~Ra~~ 111 (498)
T PRK00047 35 EFTQIFPQPGWVEHDPNEIWASQLSVIAEALAK---AGISPDQIAAIGITNQRETTVVWDKETGRPIYNAIVWQDRRTAD 111 (498)
T ss_pred eccccCCCCCeEeeCHHHHHHHHHHHHHHHHHH---cCCChhHeeEEEEecCcceEEEEECCCCcCCcccceecccchHH
Confidence 567778999999999999999999999999875 56777899999999999999999962599999999999999999
Q ss_pred HHHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 82 IVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
+++++.+... .++++++||+++++.++++||+|+++|+||
T Consensus 112 ~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~ 151 (498)
T PRK00047 112 ICEELKRDGY---EDYIREKTGLVIDPYFSGTKIKWILDNVEG 151 (498)
T ss_pred HHHHHHhccc---hhhHHHhhCCCCCccchHHHHHHHHHcCHh
Confidence 9999987632 355899999999999999999999999996
No 6
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=99.95 E-value=8.1e-28 Score=185.98 Aligned_cols=118 Identities=48% Similarity=0.879 Sum_probs=104.5
Q ss_pred CcccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCC--CeeeEEeecccceeEEeeCCCCcccccceeeeccCc
Q psy1574 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD--DIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRA 79 (124)
Q Consensus 2 ~~~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~--~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~R~ 79 (124)
++++.+|.+|++||||++||++++++++++++++ +..+. +|++||+|+|++++|++|+++|+||+|+|+|+|.|+
T Consensus 32 ~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~---~~~~~~~~I~aIgis~q~~~~v~~D~~~g~pl~~~i~w~D~R~ 108 (504)
T PTZ00294 32 PHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKL---REKGPSFKIKAIGITNQRETVVAWDKVTGKPLYNAIVWLDTRT 108 (504)
T ss_pred eecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHc---CCCCccCceEEEEeecCcceEEEEECCCCCCcccceeecchhh
Confidence 5677789999999999999999999999999863 44444 799999999999999998635999999999999999
Q ss_pred HHHHHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 80 DNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
.++++++.+..+. .+.++++||+++++.++++||+|+++|+||
T Consensus 109 ~~~~~~l~~~~~~--~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~ 151 (504)
T PTZ00294 109 YDIVNELTKKYGG--SNFFQKITGLPISTYFSAFKIRWMLENVPA 151 (504)
T ss_pred HHHHHHHHhhcCc--chHHHHhhCCcCCccchHHHHHHHHhcCHH
Confidence 9999999887652 256778999999999999999999999985
No 7
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=99.95 E-value=1.4e-27 Score=183.09 Aligned_cols=112 Identities=19% Similarity=0.294 Sum_probs=101.8
Q ss_pred ccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccceeeeccCcHHHH
Q psy1574 4 STISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIV 83 (124)
Q Consensus 4 ~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~R~~~~~ 83 (124)
.+..+.+|++||||++||+++++++++++++ +.+.+|++|++|+|+++++++|+ +|+||+|+|+|+|+|+.+++
T Consensus 35 ~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~-----~~~~~I~aI~~s~~~~~~v~~D~-~G~~l~p~i~w~D~R~~~~~ 108 (465)
T TIGR02628 35 KQAIENNDYHIWDLEAIWQKLADCCQQINSE-----LTEKHIRGIAVTTFGVDGAPFDK-QGNQLYPIISWKCPRTAPVM 108 (465)
T ss_pred CCCCCCCCceeeCHHHHHHHHHHHHHHHHhh-----cChhceEEEEEeccccceEEECC-CCCCccccccccCcccHHHH
Confidence 3567899999999999999999999999853 34567999999999999999999 69999999999999999999
Q ss_pred HHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 84 DQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
+++.+..+ .+.++++||+++.+.++++||+|+++|+||
T Consensus 109 ~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe 146 (465)
T TIGR02628 109 DNIERLLD---AQRLYAINGIGAYSFNTLYKLVWLKEHHPQ 146 (465)
T ss_pred HHHHHhhC---HHHHHHHhCCCccccchHHHHHHHHHhChH
Confidence 99988765 367899999999999999999999999996
No 8
>PRK10331 L-fuculokinase; Provisional
Probab=99.95 E-value=2e-27 Score=182.39 Aligned_cols=111 Identities=20% Similarity=0.317 Sum_probs=101.1
Q ss_pred cccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccceeeeccCcHHHHH
Q psy1574 5 TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVD 84 (124)
Q Consensus 5 ~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~R~~~~~~ 84 (124)
...+.+|++||||++||+++++++++++++. ...+|.+|+||+|+++++++|+ +|+||+|+|+|+|.|+.++++
T Consensus 37 ~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~-----~~~~I~~I~is~~~~~~v~~D~-~G~pl~p~i~w~D~Ra~~~~~ 110 (470)
T PRK10331 37 IAAENSDWHQWSLDAILQRFADCCRQINSEL-----TECHIRGITVTTFGVDGALVDK-QGNLLYPIISWKCPRTAAVME 110 (470)
T ss_pred cCCCCCCCcccCHHHHHHHHHHHHHHHHHhC-----CccceEEEEEeccccceEEECC-CcCCccCceeecCCCcHHHHH
Confidence 4568899999999999999999999998752 3457999999999999999999 699999999999999999999
Q ss_pred HHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 85 QVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 85 ~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
++.+..+ .+.++++||+++.+.++++||+|+++|+||
T Consensus 111 ~l~~~~~---~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~ 147 (470)
T PRK10331 111 NIERYIS---AQQLQQISGVGAFSFNTLYKLVWLKENHPQ 147 (470)
T ss_pred HHHHhcC---HHHHHhhhCCCccccchHHHHHHHHHhCHH
Confidence 9988765 467899999999999999999999999996
No 9
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=99.94 E-value=3.1e-27 Score=183.91 Aligned_cols=111 Identities=16% Similarity=0.214 Sum_probs=99.1
Q ss_pred CCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCccccc-----------ceeeecc
Q psy1574 9 QEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYN-----------AIVWSDT 77 (124)
Q Consensus 9 ~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p-----------~i~w~D~ 77 (124)
.+|++||||++||+++++++++++++ .++++++|++||+|+|++|++++|+ +|+||+| +|+|+|.
T Consensus 50 ~~g~~Eqdp~~~w~~~~~~~~~~~~~---~~~~~~~I~aI~~s~q~~s~v~~D~-~g~pl~~~~~~~~~~~~~~i~W~D~ 125 (536)
T TIGR01234 50 PNDQALQHPADYIEVLEAAIPTVLAE---LGVDPADVVGIGVDFTACTPAPIDS-DGNPLCLLPEFAENPHAYFKLWKHH 125 (536)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEecCcceeEEECC-CCCEeecccccccCcccceeeeccC
Confidence 38999999999999999999999986 4666778999999999999999999 6999993 9999999
Q ss_pred CcHHHHHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 78 RADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 78 R~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
|+.++++++++.... ..+.++++||+++++.++++||+|+++|+||
T Consensus 126 Ra~~~~~~l~~~~~~-~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe 171 (536)
T TIGR01234 126 AAQEEADRINRLAHA-PGEVDLSRYGGIISSEWFWAKILQITEEDPA 171 (536)
T ss_pred CcHHHHHHHHHHhhc-cchhHHHhhCCccCchhHHHHHHHHHhhChH
Confidence 999999999876520 0256889999999999999999999999986
No 10
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=99.94 E-value=1e-26 Score=179.47 Aligned_cols=117 Identities=50% Similarity=0.926 Sum_probs=106.8
Q ss_pred CcccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccceeeeccCcHH
Q psy1574 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADN 81 (124)
Q Consensus 2 ~~~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~R~~~ 81 (124)
+++..+|.+|++||||++||+++.+++++++++ .++++++|.+||+|+|++++|++|+++|+||+|+|+|+|.|+.+
T Consensus 31 ~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~i~aIgis~~~~~~v~~D~~~G~~l~p~i~w~D~R~~~ 107 (493)
T TIGR01311 31 EFTQIFPKPGWVEHDPMEIWESVLSCIAEALAK---AGIKPDDIAAIGITNQRETTVVWDKATGKPLYNAIVWQDRRTAS 107 (493)
T ss_pred eccccCCCCCcEeeCHHHHHHHHHHHHHHHHHH---cCCChhheeEEEEecCcceEEEEECCCCcCcccceeecccchHH
Confidence 466778999999999999999999999999876 56777899999999999999999973499999999999999999
Q ss_pred HHHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 82 IVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
+++++.+..+ .+.++++||+++++.++++||+|+|+|+||
T Consensus 108 ~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe 147 (493)
T TIGR01311 108 ICEELKAEGY---GEFIREKTGLPLDPYFSATKLRWLLDNVPG 147 (493)
T ss_pred HHHHHHHhcc---hHHHHHHhCCcCCccchHHHHHHHHhcCHH
Confidence 9999988765 368999999999999999999999999996
No 11
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=99.94 E-value=6.2e-27 Score=182.41 Aligned_cols=113 Identities=26% Similarity=0.386 Sum_probs=103.0
Q ss_pred CcccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCccc---------ccce
Q psy1574 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL---------YNAI 72 (124)
Q Consensus 2 ~~~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl---------~p~i 72 (124)
+|++.+|.+|++||||++||+++++++++++++ .+++..+|++||||+| +|++++|+ +|+|| +|+|
T Consensus 30 ~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~---~~~~~~~I~~Igis~~-~s~v~~D~-~g~pl~~~~~~~~~~~~i 104 (541)
T TIGR01315 30 NIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAE---SKVDPNSVKGIGFDAT-CSLVVLTH-DGEPLPVSKNGGADQNII 104 (541)
T ss_pred eeeeccCCCCcccCCHHHHHHHHHHHHHHHHHH---cCCChhheEEEEeccc-ccceEEcC-CCCeeecCCCCCccccee
Confidence 467788999999999999999999999999875 4666788999999999 89999999 59999 8999
Q ss_pred eeeccCcHHHHHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 73 VWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 73 ~w~D~R~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
+|+|.|+.++++++.+.. +.++++||+++++.++++||+|+++|+||
T Consensus 105 ~W~D~Ra~~~~~~l~~~~-----~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe 151 (541)
T TIGR01315 105 LWMDHRALAEAEKINATN-----HNLLRYVGGKMSVEMEIPKVLWLKNNMPP 151 (541)
T ss_pred EeecCcHHHHHHHHHHHH-----HHHHHHhCCeeCcchhHHHHHHHHHhChH
Confidence 999999999999997642 46889999999999999999999999996
No 12
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=99.94 E-value=1.7e-26 Score=178.67 Aligned_cols=115 Identities=24% Similarity=0.375 Sum_probs=104.0
Q ss_pred CcccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccceeeeccCcHH
Q psy1574 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADN 81 (124)
Q Consensus 2 ~~~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~R~~~ 81 (124)
+++...+.+|+.||||++||+++.+++++++++ .+.. .+|.+||||+|+++++++|+ +|+||+|+|+|+|.|+.+
T Consensus 30 ~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~---~~~~-~~I~~Igis~~~~~~v~~D~-~g~pl~~~i~w~D~R~~~ 104 (505)
T TIGR01314 30 GYPLYTPASGMAEENPEEIFEAVLVTIREVSIN---LEDE-DEILFVSFSTQMHSLIAFDE-NWQPLTRLITWADNRAVK 104 (505)
T ss_pred ecccccCCCCCeeeCHHHHHHHHHHHHHHHHHh---CCCc-CceEEEEEecccceeEEECC-CcCCcccceeccccchHH
Confidence 456667889999999999999999999999875 3333 67999999999999999999 699999999999999999
Q ss_pred HHHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 82 IVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
+++++.+..+ .++++++||+++++.++++||+|+++|+||
T Consensus 105 ~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~ 144 (505)
T TIGR01314 105 YAEQIKESKN---GFDIYRRTGTPIHPMAPLSKIIWLEAEHPD 144 (505)
T ss_pred HHHHHHhhcC---HHHHHHHHCCCCCccchHHHHHHHHHhChh
Confidence 9999988765 367999999999999999999999999996
No 13
>PRK15027 xylulokinase; Provisional
Probab=99.94 E-value=1.2e-26 Score=178.74 Aligned_cols=112 Identities=29% Similarity=0.439 Sum_probs=101.4
Q ss_pred CcccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccceeeeccCcHH
Q psy1574 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADN 81 (124)
Q Consensus 2 ~~~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~R~~~ 81 (124)
+|++.++.+|++||||++||+++++++++++++. ..++|++||+|+|++|++++|+ +|+|++|+|+|+|.|+.+
T Consensus 30 ~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~-----~~~~I~aI~is~q~~~~v~~D~-~g~~l~p~i~w~D~R~~~ 103 (484)
T PRK15027 30 KLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH-----SLQDVKALGIAGQMHGATLLDA-QQRVLRPAILWNDGRCAQ 103 (484)
T ss_pred cccccCCCCCccccCHHHHHHHHHHHHHHHHHhC-----CccceeEEEEecCCCceEEECC-CcCCccccccccCccHHH
Confidence 4667788999999999999999999999998752 3568999999999999999999 699999999999999999
Q ss_pred HHHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 82 IVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
+++++.+..+ .+++.||+++++.++++||+|+++|+||
T Consensus 104 ~~~~l~~~~~-----~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe 141 (484)
T PRK15027 104 ECALLEARVP-----QSRVITGNLMMPGFTAPKLLWVQRHEPE 141 (484)
T ss_pred HHHHHHHhcc-----hhHHHhCCCcCccchHHHHHHHHHhCHH
Confidence 9999987653 3567999999999999999999999996
No 14
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=99.94 E-value=3.1e-26 Score=175.23 Aligned_cols=111 Identities=17% Similarity=0.257 Sum_probs=101.1
Q ss_pred cccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccceeeeccCcHHH
Q psy1574 3 ISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNI 82 (124)
Q Consensus 3 ~~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~R~~~~ 82 (124)
++...+.+|+.||||+.||+++.++++++.+. ..+|++||||+|++++|++|+ +|+||+|+|+|+|.|+.++
T Consensus 33 ~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~-------~~~i~~Igis~q~~~~v~~D~-~G~~l~p~i~w~D~R~~~~ 104 (454)
T TIGR02627 33 KNGLVSQNGHECWDIDALEQEIRLGLNKVDAE-------GIAPDSIGIDTWGVDFVLLDQ-NGQRVGDPVSYRDSRTDGV 104 (454)
T ss_pred CCCCEeECCEEEEehHHHHHHHHHHHHHHhcc-------CCCceEEEEeccceeEEEEcC-CCCCccCceecCCCCCHHH
Confidence 45667889999999999999999999998642 246999999999999999999 6999999999999999999
Q ss_pred HHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 83 VDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
++++.+..+ .+.+|++||+++.+.++++||+|+++|+||
T Consensus 105 ~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~ 143 (454)
T TIGR02627 105 MAQVQSELG---KEAIYQRTGIQFLPFNTLYQLRALTEQQPD 143 (454)
T ss_pred HHHHHhhcC---HHHHHHHhCCCcCCccHHHHHHHHHHhChh
Confidence 999988765 478999999999999999999999999996
No 15
>PRK04123 ribulokinase; Provisional
Probab=99.94 E-value=3.4e-26 Score=178.46 Aligned_cols=114 Identities=15% Similarity=0.237 Sum_probs=100.3
Q ss_pred ccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccc-----------cceee
Q psy1574 6 ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLY-----------NAIVW 74 (124)
Q Consensus 6 ~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~-----------p~i~w 74 (124)
.+|.+||+||||++||+++++++++++++ .++.+.+|.+||||+|+++++++|+ +|+||+ |+|+|
T Consensus 44 ~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~---~~~~~~~I~aIgis~~~~~~v~~D~-~G~pl~~~~~~~~~p~~~~i~W 119 (548)
T PRK04123 44 LDLPPNQALQHPLDYIESLEAAIPAVLKE---AGVDPAAVVGIGVDFTGSTPAPVDA-DGTPLALLPEFAENPHAMVKLW 119 (548)
T ss_pred cCCCCCceeeCHHHHHHHHHHHHHHHHHH---cCCChhhEEEEEEecccceeEEECC-CCCEeecccccccCcccceeEe
Confidence 35999999999999999999999999876 4667788999999999999999999 699998 99999
Q ss_pred eccCcHHHHHHHHhhCCCCchhhhhhhh-CCCCCCcCHHHHHHHHhHccCC
Q psy1574 75 SDTRADNIVDQVLAKFPDQDKDYLKPIC-GLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 75 ~D~R~~~~~~~~~~~~~~~~~~~~~~~t-G~~~~~~~~~~kl~wl~~~~Pe 124 (124)
+|.|+.++++++.+..+. ..+.++.++ |+.+++.++++||+||++|+||
T Consensus 120 ~D~Ra~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~kl~Wl~~~~P~ 169 (548)
T PRK04123 120 KDHTAQEEAEEINRLAHE-RGEADLSRYIGGIYSSEWFWAKILHVLREDPA 169 (548)
T ss_pred ccCCHHHHHHHHHHHhcc-chhhHHHHhcCCccCcchHHHHHHHHHhhCHH
Confidence 999999999999876531 024577544 9999999999999999999985
No 16
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=99.92 E-value=5.5e-25 Score=169.10 Aligned_cols=107 Identities=19% Similarity=0.291 Sum_probs=98.0
Q ss_pred cCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccceeeeccCcHHHHHHH
Q psy1574 7 SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQV 86 (124)
Q Consensus 7 ~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~R~~~~~~~~ 86 (124)
.+.+|+.+|||+.||+++.++++++.. .+++|.+||||+|+++++++|+ +|+||+|+|+|+|.|+.++++++
T Consensus 25 ~~~~~~~~~d~~~~~~~i~~~l~~~~~-------~~~~I~~Igis~q~~~~v~lD~-~G~pL~pai~w~D~Ra~~~~~~l 96 (471)
T PRK10640 25 HSQDGFDTWDVDSLESAIRLGLNKVCE-------EGIRIDSIGIDTWGVDYVLLDK-QGQRVGLPVSYRDSRTDGVMAQA 96 (471)
T ss_pred eeeCCeeEECHHHHHHHHHHHHHHHhh-------cCCCccEEEEcCCcccEEEECC-CCCCcCCceeccCCCCHHHHHHH
Confidence 467899999999999999999988754 2467999999999999999999 69999999999999999999999
Q ss_pred HhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 87 LAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 87 ~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
.+..+ .+.+|++||+++.+.++++||+|+++|+||
T Consensus 97 ~~~~~---~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~ 131 (471)
T PRK10640 97 QQQLG---KRDIYRRSGIQFLPFNTLYQLRALTEQQPE 131 (471)
T ss_pred HHhcC---HHHHHHHhCCCCCCccHHHHHHHHHHhChH
Confidence 98875 467899999999999999999999999996
No 17
>PLN02669 xylulokinase
Probab=99.91 E-value=2.2e-24 Score=168.53 Aligned_cols=113 Identities=12% Similarity=0.213 Sum_probs=99.9
Q ss_pred ccCCCCeeeeCHH----------HHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCccc-------
Q psy1574 6 ISPQEGWAEQDPM----------EILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL------- 68 (124)
Q Consensus 6 ~~~~~g~~e~dp~----------~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl------- 68 (124)
.++.+|++||||+ .||+++..+++++.+ ++++.++|+||++|+|+||+|+||+++|+||
T Consensus 45 ~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~~----~~~~~~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g 120 (556)
T PLN02669 45 HYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLAK----EKFPFHKVVAISGSGQQHGSVYWRKGASAVLKSLDPSK 120 (556)
T ss_pred cCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHHH----cCCChhhEEEEEecCCcceEEEecCCCCcccccccccc
Confidence 4466778999999 688999999999864 4677889999999999999999998448887
Q ss_pred ------------ccceeeeccCcHHHHHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 69 ------------YNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 69 ------------~p~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
+|+++|+|.|+.++++++.+..++ .+.++++||++.++.|+++||+|+++|+||
T Consensus 121 ~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg--~~~l~~~tG~~~~~~~t~~ki~wl~~~~Pe 186 (556)
T PLN02669 121 SLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGG--AAELSKLTGSRAYERFTGPQIRKIYETQPE 186 (556)
T ss_pred chhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCc--HHHHHHHHCCcccccccHHHHHHHHHhChH
Confidence 799999999999999999988753 467899999999999999999999999996
No 18
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=99.91 E-value=4.6e-24 Score=165.67 Aligned_cols=111 Identities=21% Similarity=0.279 Sum_probs=97.4
Q ss_pred cCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccceeeeccCcHHHHHHH
Q psy1574 7 SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQV 86 (124)
Q Consensus 7 ~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~R~~~~~~~~ 86 (124)
.+.+|++||||++||+++++++++++++ +++++.+|++||+|+|++++++||+ +|+|+.+ +.|.|.|+.++++++
T Consensus 40 ~~~~g~~Eqd~~~~w~~~~~~l~~~~~~---~~~~~~~I~aI~~s~~~~~~v~~D~-~g~pl~~-~~~~D~Ra~~~~~~l 114 (520)
T PRK10939 40 PDVPGSMEFDLEKNWQLACQCIRQALQK---AGIPASDIAAVSATSMREGIVLYDR-NGTEIWA-CANVDARASREVSEL 114 (520)
T ss_pred CCCCCCeeECHHHHHHHHHHHHHHHHHH---cCCCccceEEEEEECCcccEEEECC-CCCEeeC-CcCCCcccHHHHHHH
Confidence 4678999999999999999999999876 4667788999999999999999999 6999976 579999999999999
Q ss_pred HhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 87 LAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 87 ~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
.+..+. ..+.++++||.++ +.++++||+|+++|+||
T Consensus 115 ~~~~~~-~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~pe 150 (520)
T PRK10939 115 KELHNN-FEEEVYRCSGQTL-ALGALPRLLWLAHHRPD 150 (520)
T ss_pred HHhcCh-HHHHHHHHhCCcC-CcchHHHHHHHHHcCcH
Confidence 876541 1257889999876 67899999999999996
No 19
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=99.89 E-value=7.5e-23 Score=157.17 Aligned_cols=116 Identities=31% Similarity=0.512 Sum_probs=105.6
Q ss_pred CcccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccceeeeccCcHH
Q psy1574 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADN 81 (124)
Q Consensus 2 ~~~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~R~~~ 81 (124)
+++..++.+|+.||||++||+++.+++++++++ .++.+.+|.+||+++|++|+|+||+ +|++++|+++|.|.|+.+
T Consensus 28 ~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~---~~~~~~~I~gIgvs~~~~g~v~~d~-~g~~l~~~i~W~D~r~~~ 103 (481)
T TIGR01312 28 PHTVISPHPGWSEQDPEDWWDATEEAIKELLEQ---ASEMGQDIKGIGISGQMHGLVLLDA-NGEVLRPAILWNDTRTAQ 103 (481)
T ss_pred cccccCCCCCCeeeCHHHHHHHHHHHHHHHHHh---cCCCcccEEEEEEecCCceeEEECC-CcCCCccchhhhccchHH
Confidence 466677899999999999999999999999875 4667789999999999999999998 699999999999999999
Q ss_pred HHHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 82 IVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
+++++.+.++ ...+++.+|+...+.++++||+|+++|+||
T Consensus 104 ~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~ 143 (481)
T TIGR01312 104 ECEELEAELG---DERVLEITGNLALPGFTAPKLLWVRKHEPE 143 (481)
T ss_pred HHHHHHHhcC---HhHHHHHHCCCCCccchHHHHHHHHHcChH
Confidence 9999988765 467889999999999999999999999986
No 20
>KOG2517|consensus
Probab=99.89 E-value=6e-23 Score=156.86 Aligned_cols=122 Identities=46% Similarity=0.777 Sum_probs=104.9
Q ss_pred CcccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccceeeeccCcHH
Q psy1574 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADN 81 (124)
Q Consensus 2 ~~~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~R~~~ 81 (124)
++....|++||+||||.++|+++++|++.+.+++-..+.....|.+|++++|+++.++|++.+|+|++|+|.|+|.|+..
T Consensus 37 ~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~igv~~qr~~~v~w~~~tg~p~~niI~W~D~Ra~~ 116 (516)
T KOG2517|consen 37 EITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIGVVNQREGSVLWNKRTGEPLTNIIVWMDHRAVS 116 (516)
T ss_pred eeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEEEEecCCceEEeecCCCCcccceEEeeccccHH
Confidence 45667899999999999999999999999988763334444557789999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 82 IVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
++++++...+. ....+...+|.++++.|..+||+||++|.|+
T Consensus 117 ~~~~ln~~~~~-~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn~~~ 158 (516)
T KOG2517|consen 117 EVEELNSSTPS-NLFLPRPYCGLPVSPEFSAPKLRWLLDNVPE 158 (516)
T ss_pred HHHHHHhcCCc-hhcccccccCCccccccchheehHHhhhCHH
Confidence 99999988753 1112346899999999999999999999885
No 21
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=99.87 E-value=6.7e-22 Score=150.69 Aligned_cols=113 Identities=27% Similarity=0.421 Sum_probs=104.8
Q ss_pred CcccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccc---------cce
Q psy1574 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLY---------NAI 72 (124)
Q Consensus 2 ~~~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~---------p~i 72 (124)
||+...+.++..||+|.++|++++.+++.++++ +|+++.+|+||||+++ +|+|++|+ +|+||. ++|
T Consensus 34 p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~---agv~~~~V~gIGvDaT-cSlvv~d~-~g~pl~v~~~~~~~~~vi 108 (544)
T COG1069 34 PYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAK---AGVDPADVVGIGVDAT-CSLVVIDR-DGNPLAVLPEFPNNPNVI 108 (544)
T ss_pred ceeccccCccccccCHHHHHHHHHHHHHHHHHH---cCCChhHeeEEEEcce-eeeEEECC-CCCeeccCCCCCCCCceE
Confidence 788899999999999999999999999999986 7999999999999999 99999999 699973 389
Q ss_pred eeeccCcHHHHHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 73 VWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 73 ~w~D~R~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
+|+|.|+.+++++++... +.++...|..+++.+..+||+||++|.|+
T Consensus 109 lWmDHrA~~EAe~in~~~-----~~~L~~~GG~~SpEm~~PKlmwl~~~~p~ 155 (544)
T COG1069 109 LWMDHRAVEEAEEINATC-----HPVLDYYGGKISPEMMIPKLMWLKREAPA 155 (544)
T ss_pred EeccchHHHHHHHHHhhc-----hHHHHhhCCccChhhhHHHHHHHHhhChH
Confidence 999999999999999875 45888999999999999999999999985
No 22
>KOG2531|consensus
Probab=99.01 E-value=1.1e-09 Score=83.11 Aligned_cols=107 Identities=16% Similarity=0.309 Sum_probs=87.7
Q ss_pred CeeeeCHH-HHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcc--------------------cc
Q psy1574 11 GWAEQDPM-EILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEP--------------------LY 69 (124)
Q Consensus 11 g~~e~dp~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~p--------------------l~ 69 (124)
|..--.|- .|.+| +.-++++++++|++.+.|.||+-++|.||-|+|.+. ++- +.
T Consensus 59 ~~~i~~PV~MWveA----lDlll~kl~~~~~d~~kV~aiSGagQQHGsVyWs~g-a~~~L~~Ld~~~~L~eQle~aF~v~ 133 (545)
T KOG2531|consen 59 GETITSPVLMWVEA----LDLLLDKLREAGFDLSKVMAISGAGQQHGSVYWSKG-AENALESLDPEKSLHEQLESAFSVQ 133 (545)
T ss_pred CcEEeccHHHHHHH----HHHHHHHHHHcCCCHHHhhhhcccccccceeeehhh-hHHHHhcCChhhHHHHHHHHhhccc
Confidence 44445666 66555 444555566679999999999999999999999883 443 12
Q ss_pred cceeeeccCcHHHHHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccCC
Q psy1574 70 NAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 124 (124)
Q Consensus 70 p~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe 124 (124)
..-+|+|..+..+|+++....++ ..++.+.||.+-+..|+.++|+.+.+.+||
T Consensus 134 ~sP~WmDsSTtkQC~ElE~~VGG--~~~la~LTGSRAy~RFTGpQIrKi~~~~pe 186 (545)
T KOG2531|consen 134 TSPIWMDSSTTKQCQELEEAVGG--AQELAKLTGSRAYERFTGPQIRKIYQQEPE 186 (545)
T ss_pred CCCcccccchHHHHHHHHHHhcc--HHHHHHhhcchhhhhcccHHHHHHHHhChH
Confidence 24489999999999999999986 889999999999999999999999999986
No 23
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.96 E-value=0.00093 Score=47.73 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=39.3
Q ss_pred eeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEe
Q psy1574 12 WAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVW 60 (124)
Q Consensus 12 ~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~ 60 (124)
....||+.||+++.+++++++++ .+.+..+|.+|++||+++++++.
T Consensus 25 ~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~i~~i~~Tg~~~~~v~~ 70 (248)
T TIGR00241 25 YKWLDTTPVIEETARAILEALKE---AGIGLEPIDKIVATGYGRHKVGF 70 (248)
T ss_pred EEEecCCCCHHHHHHHHHHHHHH---cCCChhheeEEEEECCCcccccc
Confidence 34568999999999999999875 46777899999999999999874
No 24
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=89.26 E-value=1.2 Score=28.38 Aligned_cols=37 Identities=32% Similarity=0.514 Sum_probs=29.4
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeeccc
Q psy1574 15 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 54 (124)
Q Consensus 15 ~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~ 54 (124)
-+++++++++.+.+.+++++ -++++++|.+|-||.+.
T Consensus 13 n~~e~I~~at~eLl~~i~~~---N~l~~~dIvSi~FT~T~ 49 (118)
T PF07736_consen 13 NTPEEILEATRELLEEILER---NELSPEDIVSIIFTVTP 49 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHHH---TT--GGGEEEEEEEE-T
T ss_pred CCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEeCC
Confidence 46889999999999999875 57889999999998763
No 25
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=85.96 E-value=1.9 Score=27.45 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=31.2
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeeccc
Q psy1574 15 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 54 (124)
Q Consensus 15 ~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~ 54 (124)
-+++++++++.+.+.+++++ -++.+++|.+|-||.+.
T Consensus 13 nt~e~I~~at~eLl~~i~~~---N~l~~edivSv~FT~T~ 49 (117)
T cd02185 13 NTAEEILEATRELLEEIIER---NNIKPEDIISVIFTVTP 49 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEeCC
Confidence 46788999999999998875 57889999999998874
No 26
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=85.94 E-value=1.9 Score=27.45 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=31.2
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeeccc
Q psy1574 15 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 54 (124)
Q Consensus 15 ~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~ 54 (124)
-+.+++++++.+.+.+++++ -++++++|.+|-||.+.
T Consensus 13 nt~e~I~~at~eLl~~ii~~---N~l~~edivSv~FT~T~ 49 (117)
T TIGR01796 13 NEAEEIGEAVAELLTELMER---NELTPEDLISVIFTVTE 49 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEecC
Confidence 46788999999999998875 57889999999998874
No 27
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=72.47 E-value=12 Score=26.73 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=39.4
Q ss_pred CeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeC
Q psy1574 11 GWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDL 62 (124)
Q Consensus 11 g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~ 62 (124)
|...+|++++.+.+...+..+...+ ..+.-...|+.|.++++|.=-+-+|.
T Consensus 177 Gk~sf~~e~L~eNi~a~l~~i~~~~-p~~~kg~~ik~v~vstTMGP~v~v~~ 227 (228)
T COG0081 177 GKVSFDDEKLAENIEALLNAIVKAK-PAGAKGQYIKSVYVSTTMGPGVKVDL 227 (228)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhC-cCCcccceEeEEEEecCCCCCEEecc
Confidence 6778999999999988888876643 33334678999999999876666653
No 28
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=72.05 E-value=21 Score=26.09 Aligned_cols=37 Identities=24% Similarity=0.414 Sum_probs=27.9
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeeccc
Q psy1574 15 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 54 (124)
Q Consensus 15 ~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~ 54 (124)
.+++++.+.+.+.+++++++ .+....+|.+|||+.-+
T Consensus 31 ~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gIgva~pG 67 (318)
T TIGR00744 31 TTPETIVDAIASAVDSFIQH---IAKVGHEIVAIGIGAPG 67 (318)
T ss_pred CCHHHHHHHHHHHHHHHHHh---cCCCccceEEEEEeccc
Confidence 36788888888888888764 45556688899988764
No 29
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=70.91 E-value=23 Score=22.08 Aligned_cols=94 Identities=6% Similarity=0.015 Sum_probs=55.8
Q ss_pred CCcccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccc-cceeeeccCc
Q psy1574 1 MDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLY-NAIVWSDTRA 79 (124)
Q Consensus 1 ~~~~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~-p~i~w~D~R~ 79 (124)
||+=.+.-.-+.....++.+-+.+.+++.+++.+ + ++ -+.|+-....-+.++. +..|+. =-|...-.|+
T Consensus 1 MP~~~i~tn~~~~~~~~~~~~~~~~~~l~~~lgk------P-e~--~~~v~~~~~~~m~f~g-~~~p~a~v~i~~~g~~~ 70 (116)
T PTZ00397 1 MPCCQVSTNVNATDDQADAALSDIENAIADVLGK------P-LS--YIMSGYDYQKHMRFGG-SHDGCCFVRVTSIGGIS 70 (116)
T ss_pred CCeEEEEecCCCccccHHHHHHHHHHHHHHHhCC------C-hH--HEEEEEeCCceEEECC-CCCceEEEEEEEecCCC
Confidence 4443333333444556788888888888777643 3 33 3444444444555555 344543 2234567788
Q ss_pred HHHHHHHHhhCCCCchhhhhhhhCCCCCC
Q psy1574 80 DNIVDQVLAKFPDQDKDYLKPICGLPVSP 108 (124)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~tG~~~~~ 108 (124)
.+..+++.+.+ .+.+.+.+|.++..
T Consensus 71 ~e~k~~l~~~i----~~~l~~~lgi~~~r 95 (116)
T PTZ00397 71 RSNNSSIAAAI----TKILASHLKVKSER 95 (116)
T ss_pred HHHHHHHHHHH----HHHHHHHhCcCccc
Confidence 88888887765 36677778877654
No 30
>PHA02754 hypothetical protein; Provisional
Probab=68.18 E-value=17 Score=20.29 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeC
Q psy1574 21 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDL 62 (124)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~ 62 (124)
-+.+.++.|++-+-+.++|+=-+.|++|..||- -+|.+-.
T Consensus 13 eK~Fke~MRelkD~LSe~GiYi~RIkai~~SGd--kIVVi~a 52 (67)
T PHA02754 13 EKDFKEAMRELKDILSEAGIYIDRIKAITTSGD--KIVVITA 52 (67)
T ss_pred HhHHHHHHHHHHHHHhhCceEEEEEEEEEecCC--EEEEEEc
Confidence 345667777777766677887788888776654 4666655
No 31
>PRK13690 hypothetical protein; Provisional
Probab=68.14 E-value=15 Score=25.18 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeC
Q psy1574 16 DPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDL 62 (124)
Q Consensus 16 dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~ 62 (124)
+.+++-+.+..++.+++++ +++.+.+|-.||+|+.-..---+.+
T Consensus 2 ~~~~i~~~~~~~~~El~~~---a~l~~g~i~VvGcSTSEV~G~~IGt 45 (184)
T PRK13690 2 DLEEIKKQTRQILEELLEQ---ANLKPGQIFVLGCSTSEVLGERIGT 45 (184)
T ss_pred CHHHHHHHHHHHHHHHHHh---hCCCCCCEEEEecchHhhCCcccCC
Confidence 5677888899999999876 5778889999999987433333443
No 32
>COG1647 Esterase/lipase [General function prediction only]
Probab=62.57 E-value=16 Score=26.23 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=24.4
Q ss_pred eeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEee
Q psy1574 12 WAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 51 (124)
Q Consensus 12 ~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is 51 (124)
..+-.|++||+.+..+.+.+.++ |. ++|..+|+|
T Consensus 60 fl~t~~~DW~~~v~d~Y~~L~~~----gy--~eI~v~GlS 93 (243)
T COG1647 60 FLKTTPRDWWEDVEDGYRDLKEA----GY--DEIAVVGLS 93 (243)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHc----CC--CeEEEEeec
Confidence 44568999999999999998753 43 455555544
No 33
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=58.10 E-value=30 Score=24.65 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=39.0
Q ss_pred CeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeC
Q psy1574 11 GWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDL 62 (124)
Q Consensus 11 g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~ 62 (124)
|....+++++.+.+...+..+..+. ..+.....|+.+.++++|.--+.+|-
T Consensus 175 G~~~m~~~~l~eNi~a~l~~i~~~~-p~~~kg~~ik~v~issTMGp~v~i~~ 225 (229)
T CHL00129 175 GKSNFTEEDLLENLQAIYESIEQNR-PSGVKGKYWKSFYICSTMGPSIQIDI 225 (229)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHhC-cccccCceEEEEEEECCCCCCEEecc
Confidence 6677899999999999988887642 23344447999999999877777764
No 34
>COG1614 CdhC CO dehydrogenase/acetyl-CoA synthase beta subunit [Energy production and conversion]
Probab=56.06 E-value=43 Score=25.62 Aligned_cols=65 Identities=22% Similarity=0.213 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-h-CCCCCCCeeeEEeeccccee-----EEeeCCCCcccccceeeeccCcHHH
Q psy1574 16 DPMEILQAVQTTMDRAIEKLS-A-HGLSRDDIVTLGITNQRETT-----VVWDLNTGEPLYNAIVWSDTRADNI 82 (124)
Q Consensus 16 dp~~~~~~~~~~~~~~~~~~~-~-~~~~~~~I~~i~is~~~~~~-----v~~d~~~G~pl~p~i~w~D~R~~~~ 82 (124)
|++..-+-| +..+++.++-+ + ..++-++|...-.|.+..|+ ..+.. |--.|+.+|+|.|.|++.-
T Consensus 154 d~~~Vee~L-E~Ar~iy~~RDer~k~l~dEDVdvFYgC~mCQSFAPThVCvvtP-DRpsLCGaInw~D~rAAaK 225 (470)
T COG1614 154 DEAKVEEFL-ETAREIYKKRDERTKALSDEDVDVFYGCTMCQSFAPTHVCVVTP-DRPSLCGAINWFDARAAAK 225 (470)
T ss_pred CHHHHHHHH-HHHHHHHHhhhhhhhhcccccccceeeeeeecccCCceeEEecC-Ccccccccceeecchhhhc
Confidence 455444443 44455444321 1 23555678878788777665 34455 4566889999999999763
No 35
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=50.66 E-value=23 Score=22.83 Aligned_cols=48 Identities=6% Similarity=0.087 Sum_probs=27.1
Q ss_pred ccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeC
Q psy1574 6 ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDL 62 (124)
Q Consensus 6 ~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~ 62 (124)
+.+.|.+.......+.+++.+|++.+.+ ..++.|++...+.|..-+..
T Consensus 76 H~~~p~~~~~~~~~l~~~~~~~L~~a~~---------~~~~SIAfP~igtG~~g~p~ 123 (137)
T cd02903 76 HVVLPNWSNGALKILKDIVSECLEKCEE---------LSYTSISFPAIGTGNLGFPK 123 (137)
T ss_pred EecCCCCCCchHHHHHHHHHHHHHHHHH---------CCCcEEEECCCcCcCCCCCH
Confidence 3344444322234455555555544432 47889999999877765544
No 36
>COG4401 AroH Chorismate mutase [Amino acid transport and metabolism]
Probab=50.24 E-value=54 Score=20.83 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=28.1
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeeccc
Q psy1574 15 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 54 (124)
Q Consensus 15 ~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~ 54 (124)
-.++++.+++.+.++++.++ ...+++++..+-+|.+.
T Consensus 15 nt~eeI~~at~eLl~~i~~~---N~~~pedv~sv~~svT~ 51 (125)
T COG4401 15 NTEEEILDATKELLEEIEEE---NITDPEDVVSVILSVTE 51 (125)
T ss_pred CCHHHHHHHHHHHHHHHHHh---cCCChhheeeEEEEecc
Confidence 35678888888888887764 35688899988888764
No 37
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=47.81 E-value=39 Score=25.86 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecc
Q psy1574 21 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 53 (124)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~ 53 (124)
=+.+.+++++++++ +++++++|.+||.-||
T Consensus 70 g~~~a~av~~~~~~---~~l~~~~id~IgsHGQ 99 (365)
T PRK09585 70 GRLFAEAVNALLAE---AGLSPEDIDAIGSHGQ 99 (365)
T ss_pred HHHHHHHHHHHHHH---cCCCccCccEEEeCCc
Confidence 34455566666554 7888899999998777
No 38
>PTZ00225 60S ribosomal protein L10a; Provisional
Probab=46.67 E-value=61 Score=22.86 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=33.7
Q ss_pred CeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccc
Q psy1574 11 GWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRE 55 (124)
Q Consensus 11 g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~ 55 (124)
|...++++++.+.+..++..+.+.+.. -...|+.|.++++|.
T Consensus 167 Gk~~m~~e~i~eNi~a~l~~l~~~~p~---k~~nIksv~iktTMG 208 (214)
T PTZ00225 167 GHVEMTEEQLRQNVVMAINFLVSLLKK---NWQNLKSAYIKSTMG 208 (214)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhCCc---CCceEeEEEEECCCC
Confidence 677889999999999999998876421 235799999999875
No 39
>KOG0833|consensus
Probab=46.05 E-value=95 Score=21.25 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccce
Q psy1574 16 DPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 72 (124)
Q Consensus 16 dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i 72 (124)
+|+++.....++.+.+ .+.++...|.+++.++-+.-+.-++-+ --++++.|
T Consensus 20 ~~~~L~~l~~~A~~~A-----yaPyS~fkVGA~~r~ssGrif~G~NVE-n~~~~~sI 70 (173)
T KOG0833|consen 20 DPQELLKLARKAMKLA-----YAPYSKFKVGAAGRASSGRIFLGVNVE-NASYHHSI 70 (173)
T ss_pred CHHHHHHHHHHHHHhc-----cCCccCCceEEEEEecCCcEEEeeeec-ccCCCCcc
Confidence 5666655555554433 256777899999999998888888886 45665555
No 40
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=45.87 E-value=36 Score=23.67 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeE
Q psy1574 21 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTV 58 (124)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v 58 (124)
|+-+.+.++++.+++.+.|..++.|.||+--|...+-+
T Consensus 9 w~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pari 46 (192)
T COG2236 9 WEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARI 46 (192)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHH
Confidence 66677778888888777889999999988666554433
No 41
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=44.48 E-value=14 Score=25.10 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeC
Q psy1574 16 DPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDL 62 (124)
Q Consensus 16 dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~ 62 (124)
.|++....+.++++++++. .++++++|..|.++++..+=.++-+
T Consensus 31 t~~d~~~gi~~al~~l~~~---~~~~~~~i~~v~~gTT~~tNAl~e~ 74 (176)
T PF05378_consen 31 TPDDPAEGILEALDALLEE---SGIDPSDIDRVRHGTTVATNALLER 74 (176)
T ss_pred CCcCHHHHHHHHHHhhhcc---cCCChhhCcEEEeccHHHHHHHHhc
Confidence 4678888999999998875 4677889999998887655445544
No 42
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=43.21 E-value=21 Score=18.82 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=21.4
Q ss_pred ccceeEEeeCCCCcccccceeeeccCcHHHHHHHHh
Q psy1574 53 QRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLA 88 (124)
Q Consensus 53 ~~~~~v~~d~~~G~pl~p~i~w~D~R~~~~~~~~~~ 88 (124)
+-.++.++|+ +|-|++++ .|+....+.+..
T Consensus 5 ~y~gigp~De-~giP~~~v-----d~~kDWYktMFk 34 (47)
T PF02208_consen 5 HYEGIGPVDE-SGIPLSNV-----DRPKDWYKTMFK 34 (47)
T ss_pred cCCCcCcccc-CCCccccc-----cchhHHHHHHHH
Confidence 4467889999 69999766 566666666543
No 43
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=43.17 E-value=36 Score=21.13 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCeeeEE
Q psy1574 24 VQTTMDRAIEKLSAHGLSRDDIVTLG 49 (124)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~I~~i~ 49 (124)
+.+++++++++ +++++++|..|-
T Consensus 27 ~~~~i~~al~~---agi~~~~I~~i~ 49 (119)
T PF02801_consen 27 LARAIRRALAD---AGISPEDIDYIE 49 (119)
T ss_dssp HHHHHHHHHHH---HTS-GGGEEEEE
T ss_pred HHHHHHHHHhh---hccccccceeee
Confidence 34555555554 578888885443
No 44
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast. This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.
Probab=43.05 E-value=76 Score=22.57 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=37.7
Q ss_pred CeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeC
Q psy1574 11 GWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDL 62 (124)
Q Consensus 11 g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~ 62 (124)
|....+++++.+.+...+..+.++. ..+.....|+.|-++++|.--+-+|-
T Consensus 174 G~~~m~~e~i~eNi~a~l~~i~~~~-p~~~kg~~Ik~v~lssTmGp~~~i~~ 224 (227)
T TIGR01169 174 GKVSFDSEKLKENLEALLDAIKKAK-PSGAKGQYIKNIALSSTMGPGIKVDL 224 (227)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHhC-ccccCCCEEEEEEEECCCCCCEEecc
Confidence 6677899999999999888887642 22333356999999998776666664
No 45
>PTZ00029 60S ribosomal protein L10a; Provisional
Probab=42.77 E-value=69 Score=22.54 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=32.9
Q ss_pred CeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccc
Q psy1574 11 GWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRE 55 (124)
Q Consensus 11 g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~ 55 (124)
|...++++++.+.+..++..+.+.+. .| ...|+.|.++++|.
T Consensus 169 G~~~~~~e~l~eNi~avl~~i~~~~~-kg--~~~Iksv~lktTmg 210 (216)
T PTZ00029 169 GNVEMTEEQLRQNIVLSINFLVSLLK-KN--WQNIKTLHIKSTMG 210 (216)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhc-cc--cccEeEEEEECCCC
Confidence 66778999999999999988877642 11 25799999998864
No 46
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=42.36 E-value=62 Score=23.14 Aligned_cols=42 Identities=24% Similarity=0.398 Sum_probs=26.1
Q ss_pred eEEeeccccee--EEeeCCCCcccccceeeec----------cCcHHHHHHHHhh
Q psy1574 47 TLGITNQRETT--VVWDLNTGEPLYNAIVWSD----------TRADNIVDQVLAK 89 (124)
Q Consensus 47 ~i~is~~~~~~--v~~d~~~G~pl~p~i~w~D----------~R~~~~~~~~~~~ 89 (124)
-+|++=--+++ +.+|+ ||+|+.-+.-|.| .-+.+.++++.+.
T Consensus 31 ~vGVDLGT~~iV~~vlD~-d~~Pvag~~~~advVRDGiVvdf~eaveiVrrlkd~ 84 (277)
T COG4820 31 WVGVDLGTCDIVSMVLDR-DGQPVAGCLDWADVVRDGIVVDFFEAVEIVRRLKDT 84 (277)
T ss_pred EEEeecccceEEEEEEcC-CCCeEEEEehhhhhhccceEEehhhHHHHHHHHHHH
Confidence 35555444444 57899 6999876665544 4456666666554
No 47
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=41.69 E-value=15 Score=21.76 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=14.0
Q ss_pred eecccceeEEeeCCCCcccccceeeeccCcH
Q psy1574 50 ITNQRETTVVWDLNTGEPLYNAIVWSDTRAD 80 (124)
Q Consensus 50 is~~~~~~v~~d~~~G~pl~p~i~w~D~R~~ 80 (124)
-|||...+++.|+ +|+.+. -|.+.|.=
T Consensus 21 ~sgq~~D~~v~d~-~g~~vw---rwS~~~~F 47 (82)
T PF12690_consen 21 PSGQRYDFVVKDK-EGKEVW---RWSDGKMF 47 (82)
T ss_dssp SSS--EEEEEE-T-T--EEE---ETTTT---
T ss_pred CCCCEEEEEEECC-CCCEEE---EecCCchh
Confidence 4679999999999 598853 56665543
No 48
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed
Probab=41.24 E-value=93 Score=21.84 Aligned_cols=45 Identities=22% Similarity=0.428 Sum_probs=34.3
Q ss_pred CeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeE
Q psy1574 11 GWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTV 58 (124)
Q Consensus 11 g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v 58 (124)
|...++++++.+.+..++..+.+.. ..| ...|+.|.++++|.--+
T Consensus 167 G~~~m~~e~l~eNi~avl~~i~~~~-p~g--~~~Iksi~lktTmgp~i 211 (215)
T PRK04203 167 GTEDMSPEELAENIDAVLNRIESKL-EKG--RQNIKSVYVKTTMGPAV 211 (215)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHhC-ccc--cccEEEEEEECCCCCCE
Confidence 5667899999999999999987653 223 36899999999865433
No 49
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=40.53 E-value=47 Score=16.11 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=16.2
Q ss_pred EEeecccceeEEeeCCCCcccc
Q psy1574 48 LGITNQRETTVVWDLNTGEPLY 69 (124)
Q Consensus 48 i~is~~~~~~v~~d~~~G~pl~ 69 (124)
|-+.+....++.+|.++|+.+.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEE
Confidence 3344667788999988898764
No 50
>PF03799 FtsQ: Cell division protein FtsQ; InterPro: IPR005548 FtsQ is one of several cell division proteins. FtsQ interacts with other Fts proteins, reviewed in []. The precise function of FtsQ is unknown.; PDB: 2VH1_B 2VH2_B 2ALJ_A 1YR1_A.
Probab=40.16 E-value=37 Score=20.51 Aligned_cols=22 Identities=9% Similarity=-0.047 Sum_probs=16.3
Q ss_pred EEeecccceeEEeeCCCCccccc
Q psy1574 48 LGITNQRETTVVWDLNTGEPLYN 70 (124)
Q Consensus 48 i~is~~~~~~v~~d~~~G~pl~p 70 (124)
||+-....++.++|+ +|+.+.+
T Consensus 1 VA~~~~~~~~~lvd~-~G~v~~~ 22 (117)
T PF03799_consen 1 VAYWQDGGGYYLVDE-NGVVFEP 22 (117)
T ss_dssp EEEECCTTEEEEEET-TS-EECC
T ss_pred CEEEecCCceEEECC-CCeEEec
Confidence 455666788999999 5999866
No 51
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=39.88 E-value=46 Score=25.30 Aligned_cols=37 Identities=19% Similarity=0.360 Sum_probs=26.2
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecc
Q psy1574 14 EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 53 (124)
Q Consensus 14 e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~ 53 (124)
|.-...=-+.+..++++++++ +|++.++|.+|++|..
T Consensus 44 e~Asr~H~e~i~~li~~al~e---A~~~~~dID~IA~T~g 80 (342)
T COG0533 44 ELASRHHVENIPPLIEEALAE---AGVSLEDIDAIAVTAG 80 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHH---cCCCcccCCEEEEecC
Confidence 333344456667777777764 7888899999999864
No 52
>PRK09557 fructokinase; Reviewed
Probab=39.54 E-value=1.1e+02 Score=22.08 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=20.6
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeeccc
Q psy1574 15 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 54 (124)
Q Consensus 15 ~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~ 54 (124)
.+++++.+.+.+.++++... ...+.+|||+.-+
T Consensus 34 ~~~~~~~~~i~~~i~~~~~~-------~~~~~gIgi~~pG 66 (301)
T PRK09557 34 DDYQQTIEAIATLVDMAEQA-------TGQRGTVGVGIPG 66 (301)
T ss_pred CCHHHHHHHHHHHHHHHHhh-------cCCceEEEecCcc
Confidence 36677777777777766542 1245677777654
No 53
>PF14239 RRXRR: RRXRR protein
Probab=39.33 E-value=18 Score=24.85 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=11.5
Q ss_pred EEeeCCCCcccccce
Q psy1574 58 VVWDLNTGEPLYNAI 72 (124)
Q Consensus 58 v~~d~~~G~pl~p~i 72 (124)
..+|+ +|+||.|+-
T Consensus 2 fVld~-~gkPLmP~~ 15 (176)
T PF14239_consen 2 FVLDK-NGKPLMPCH 15 (176)
T ss_pred eEECC-CCCcCCCCC
Confidence 56899 699999983
No 54
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=38.21 E-value=26 Score=23.40 Aligned_cols=50 Identities=24% Similarity=0.330 Sum_probs=32.2
Q ss_pred ccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccce
Q psy1574 4 STISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 72 (124)
Q Consensus 4 ~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i 72 (124)
|+....|-|...+++++-+.+++.- + .|.++++| |+++=|. .|-|.-..+
T Consensus 17 P~~~~~P~W~~~~~eeve~~I~~la----k----kG~~pSqI----------G~~LRD~-~gip~Vk~v 66 (151)
T PRK08561 17 PARTEPPEWVDYSPEEIEELVVELA----K----QGYSPSMI----------GIILRDQ-YGIPDVKLI 66 (151)
T ss_pred CCCCCCCccccCCHHHHHHHHHHHH----H----CCCCHHHh----------hhhHhhc-cCCCceeee
Confidence 3445667799999999877765542 2 36777766 4556666 566654443
No 55
>PRK05424 rplA 50S ribosomal protein L1; Validated
Probab=37.28 E-value=1.1e+02 Score=21.86 Aligned_cols=51 Identities=12% Similarity=0.099 Sum_probs=38.2
Q ss_pred CeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeC
Q psy1574 11 GWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDL 62 (124)
Q Consensus 11 g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~ 62 (124)
|....+++++.+.+...+..+.++. ..+.....|+.|-++++|.--+.+|.
T Consensus 175 G~~~m~~e~i~eNi~a~l~~i~~~~-p~~~kg~~Ik~v~lssTmGp~~~i~~ 225 (230)
T PRK05424 175 GKVSFDAEKLKENLKALIDAIKKAK-PATAKGTYIKSVSLSSTMGPGVKVDP 225 (230)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHhC-ccccCCCEEEEEEEECCCCCCEEech
Confidence 5667889999999999888887642 23333457999999998877677765
No 56
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=37.12 E-value=93 Score=18.58 Aligned_cols=35 Identities=14% Similarity=0.327 Sum_probs=25.2
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeE
Q psy1574 15 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTV 58 (124)
Q Consensus 15 ~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v 58 (124)
.|+.++...+.+|+++- +.+-|+-||+++...+-+
T Consensus 42 ~~~~~Vl~el~~c~~~~---------p~~YVRlig~D~~~q~~~ 76 (84)
T cd00307 42 RSEAQVLAALEACLAEH---------PGEYVRLIGIDPKAKRRV 76 (84)
T ss_pred CCHHHHHHHHHHHHHHC---------CCCeEEEEEEeCCccEEE
Confidence 78888888877776552 347899999998754443
No 57
>PLN02587 L-galactose dehydrogenase
Probab=36.14 E-value=51 Score=24.16 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=10.3
Q ss_pred CCeeeEEeecccc
Q psy1574 43 DDIVTLGITNQRE 55 (124)
Q Consensus 43 ~~I~~i~is~~~~ 55 (124)
..|+.||+|++..
T Consensus 144 Gkir~iGvSn~~~ 156 (314)
T PLN02587 144 GKVRFIGITGLPL 156 (314)
T ss_pred CCeEEEEecCCCH
Confidence 4799999998643
No 58
>PRK09698 D-allose kinase; Provisional
Probab=36.11 E-value=1.7e+02 Score=21.17 Aligned_cols=28 Identities=4% Similarity=0.078 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeeeEEeeccc
Q psy1574 21 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 54 (124)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~ 54 (124)
.+.+.+.+++++++ .+ .+|.+|||+.-+
T Consensus 44 ~~~l~~~i~~~~~~---~~---~~i~gigia~pG 71 (302)
T PRK09698 44 VSGLGEMIDEYLRR---FN---ARCHGIVMGFPA 71 (302)
T ss_pred HHHHHHHHHHHHHH---cC---CCeeEEEEeCCc
Confidence 77777888887764 22 578899988765
No 59
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=35.39 E-value=77 Score=24.29 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEe
Q psy1574 21 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVW 60 (124)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~ 60 (124)
=+.+.+++++++++ .++++++|.+||.-|| ++.-.
T Consensus 67 g~~~a~av~~~l~~---~~i~~~~I~~IgsHGQ--Tv~H~ 101 (364)
T PF03702_consen 67 GELFADAVNQFLKK---NGISPSDIDLIGSHGQ--TVFHR 101 (364)
T ss_dssp HHHHHHHHHHHHHH---CT--GGGEEEEEE--E--EEEEE
T ss_pred HHHHHHHHHHHHHH---cCCCcccccEEEeCCc--ceecC
Confidence 34455666666654 7888999999887665 55544
No 60
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=35.27 E-value=55 Score=23.44 Aligned_cols=13 Identities=23% Similarity=0.171 Sum_probs=10.7
Q ss_pred CCeeeEEeecccc
Q psy1574 43 DDIVTLGITNQRE 55 (124)
Q Consensus 43 ~~I~~i~is~~~~ 55 (124)
..|+.||+|++..
T Consensus 121 Gkir~iGvSn~~~ 133 (267)
T PRK11172 121 GLTREIGISNFTI 133 (267)
T ss_pred CCCCEEEEccCCH
Confidence 4899999999754
No 61
>PTZ00249 variable surface protein Vir28; Provisional
Probab=35.13 E-value=26 Score=27.96 Aligned_cols=51 Identities=12% Similarity=0.211 Sum_probs=39.2
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccce
Q psy1574 13 AEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 72 (124)
Q Consensus 13 ~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i 72 (124)
...|++-++..+..++..++.. + +.+-.+||||-|..+.++=+ -.|+...+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~-----v--~p~p~~gvsg~~g~l~ll~~--~t~~g~~~ 465 (516)
T PTZ00249 415 STFDTGTIMGTIKGAVSNVLEA-----V--EPVPVLGVSGGMGALYLLLK--YTPIGSLF 465 (516)
T ss_pred ccccchhhHHhhhHHHHHhhhc-----c--CCcceeeecccccchheeee--eccchhhh
Confidence 4578999999999999998874 2 45556899999888887776 66776544
No 62
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=34.90 E-value=64 Score=16.91 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=16.5
Q ss_pred hhhhhhhhCCCCCCcCHHHHHHHHhHc
Q psy1574 95 KDYLKPICGLPVSPYFSALKLSWLIQN 121 (124)
Q Consensus 95 ~~~~~~~tG~~~~~~~~~~kl~wl~~~ 121 (124)
.+++.+.||.. .+..+..||+.+
T Consensus 5 ~~El~elTG~k----~~~~Q~~~L~~~ 27 (47)
T PF13986_consen 5 DEELQELTGYK----RPSKQIRWLRRN 27 (47)
T ss_pred HHHHHHHHCCC----CHHHHHHHHHHC
Confidence 35677778854 567788888875
No 63
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=34.30 E-value=83 Score=22.99 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeeeEEeeccccee
Q psy1574 21 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETT 57 (124)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~ 57 (124)
.++..+++++++++ .|+...+|.+++.||.+..+
T Consensus 41 ~~~~~~~l~~~~~~---~g~~~~~i~~i~~TGYGR~~ 74 (262)
T TIGR02261 41 FKLAEDAYDDLLEE---AGLAAADVAYCATTGEGESL 74 (262)
T ss_pred HHHHHHHHHHHHHH---cCCChhheEEEEEECCchhh
Confidence 44556667776654 57777899999999987765
No 64
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=34.02 E-value=86 Score=24.50 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HhCCCCCCCeeeEEeec---ccceeEEeeC
Q psy1574 18 MEILQAVQTTMDRAIEKL-SAHGLSRDDIVTLGITN---QRETTVVWDL 62 (124)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~I~~i~is~---~~~~~v~~d~ 62 (124)
+++-+.+.+.+.++++++ .++|+++++|..+.|+| |.|=+.-+|.
T Consensus 56 ~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~ 104 (412)
T PF14574_consen 56 EELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDP 104 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCCh
Confidence 455566666666666555 24689999999999887 3343444544
No 65
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=33.23 E-value=58 Score=23.57 Aligned_cols=30 Identities=17% Similarity=0.368 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecc
Q psy1574 21 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 53 (124)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~ 53 (124)
-+.+...+++++++ +++...+|.+|+++.-
T Consensus 30 ~~~L~~~i~~~l~~---~~~~~~did~iavt~G 59 (268)
T PF00814_consen 30 SENLPPLIEELLKE---AGISLSDIDAIAVTRG 59 (268)
T ss_dssp HHHHHHHHHHHHHH---HTS-GGGESEEEEEEE
T ss_pred HHHHHHHHHHHHHH---cCCCHHHCCEEEEecC
Confidence 44556666666664 5788888998887653
No 66
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=33.06 E-value=71 Score=21.81 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeeeEEeeccc
Q psy1574 23 AVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 54 (124)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~ 54 (124)
.+.+++++++++ ++..+.+|-.||+|+.-
T Consensus 2 q~~~~~~El~~~---a~l~~g~i~VvGcSTSE 30 (172)
T PF04260_consen 2 QLRQALEELLEQ---ANLKPGQIFVVGCSTSE 30 (172)
T ss_dssp -HHHHHHHHHHH---S---TT-EEEEEE-HHH
T ss_pred hHHHHHHHHHHh---cCCCCCCEEEEeeeHHH
Confidence 355667777765 56777899999998863
No 67
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=32.96 E-value=47 Score=20.85 Aligned_cols=52 Identities=21% Similarity=0.244 Sum_probs=27.7
Q ss_pred eecccceeEEeeCCCCcccccceeeeccCcHHHHHHHHhhCCCCchhhhhhhhCCCC
Q psy1574 50 ITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPV 106 (124)
Q Consensus 50 is~~~~~~v~~d~~~G~pl~p~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~~tG~~~ 106 (124)
+.+....+|++|+.+++|+. + +-.|..++.....-.... ..+.++...|.++
T Consensus 53 ~~~~~vDFvv~d~~~~~p~~-v-IEld~~~h~~~~~~~rD~---~k~~~l~~agipl 104 (126)
T PF10881_consen 53 INQKHVDFVVCDKRDGRPVA-V-IELDGSSHDQEKRQERDE---FKDRVLKKAGIPL 104 (126)
T ss_pred hcCCCccEEEEECCCCcEEE-E-EEecCccccchhhHHHHH---HHHHHHHHCCCCE
Confidence 44567889999943688873 3 444444433221111111 1355666777653
No 68
>COG2869 NqrC Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC [Energy production and conversion]
Probab=32.21 E-value=35 Score=24.67 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=25.1
Q ss_pred eeeEEeecccceeEEeeCCCCcccccceeeecc
Q psy1574 45 IVTLGITNQRETTVVWDLNTGEPLYNAIVWSDT 77 (124)
Q Consensus 45 I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~ 77 (124)
|.|-|+=|+|.+++.+.. ||+-+ +.++|.+.
T Consensus 145 i~G~GLWs~mYgfvav~~-DGnTV-~G~tyYqq 175 (264)
T COG2869 145 IYGFGLWSMMYGFVAVQP-DGNTV-NGITYYQQ 175 (264)
T ss_pred eeccchhhhheeeEEEcC-CCCee-cceeeeec
Confidence 556778889999999999 79998 46677665
No 69
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=32.04 E-value=82 Score=23.44 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEE
Q psy1574 22 QAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVV 59 (124)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~ 59 (124)
++..+++++++++ .|...++|..+++||.+...+.
T Consensus 68 ~~a~~~l~~~l~~---~g~~~~~v~~~~~TGyGr~~~~ 102 (293)
T TIGR03192 68 DSAKNALQGIMDK---IGMKLEDINYVVGTGYGRVNVP 102 (293)
T ss_pred HHHHHHHHHHHHH---cCCcccceEEEEEECcchhhcc
Confidence 3566667777664 5666678999999988766553
No 70
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=31.46 E-value=2e+02 Score=20.76 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=19.2
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeeccc
Q psy1574 15 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 54 (124)
Q Consensus 15 ~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~ 54 (124)
.+++++.+.+.+.++++... . ..+.+|||+.-+
T Consensus 34 ~~~~~~~~~i~~~i~~~~~~---~----~~~~~igia~pG 66 (303)
T PRK13310 34 DSYDAFLDAVCELVAEADQR---F----GCKGSVGIGIPG 66 (303)
T ss_pred cCHHHHHHHHHHHHHHHHhh---c----CCcceEEEeCCC
Confidence 35777777777777766432 1 223456666544
No 71
>PLN02709 nudix hydrolase
Probab=30.20 E-value=1.6e+02 Score=20.95 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccceeeec
Q psy1574 24 VQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSD 76 (124)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D 76 (124)
...|+|++.+. .|++++.+.-+|.-.. ++.. +|-.++|++-+.+
T Consensus 84 ~~tAlRE~~EE---iGl~~~~v~vlg~L~~-----~~t~-sg~~V~P~V~~~~ 127 (222)
T PLN02709 84 IATALREAREE---IGLDPSLVTIISVLEP-----FVNK-KGMSVAPVIGFLH 127 (222)
T ss_pred HHHHHHHHHHH---HCCCchheEEeeecCC-----eECC-CCCEEEEEEEEec
Confidence 36678888775 5888887777765433 3356 5889999887764
No 72
>TIGR00316 cdhC CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit. Nomenclature follows the description for Methanosarcina thermophila. The CO-methylating acetyl-CoA synthase is considered the defining enzyme of the Wood-Ljungdahl pathway, used for acetate catabolism by sulfate reducing bacteria but for acetate biosynthesis by acetogenic bacteria such as oorella thermoacetica (f. Clostridium thermoaceticum).
Probab=30.10 E-value=1.4e+02 Score=23.62 Aligned_cols=67 Identities=21% Similarity=0.259 Sum_probs=36.9
Q ss_pred eCHHHHHHHHHHHHHHHHHHHH-h-CCCCCCCeeeEEeeccccee-----EEeeCCCCcccccceeeeccCcHHHH
Q psy1574 15 QDPMEILQAVQTTMDRAIEKLS-A-HGLSRDDIVTLGITNQRETT-----VVWDLNTGEPLYNAIVWSDTRADNIV 83 (124)
Q Consensus 15 ~dp~~~~~~~~~~~~~~~~~~~-~-~~~~~~~I~~i~is~~~~~~-----v~~d~~~G~pl~p~i~w~D~R~~~~~ 83 (124)
-|++..-+.+..+- +.-++=+ + .+..-++|.-.--|+...|+ ..+-. +--.|+.+|+|.|.|++.+.
T Consensus 151 Td~e~V~e~l~~A~-~~y~~RD~R~~~l~de~Vd~fY~C~lCQsFAP~HVCvvtP-eR~~lCGaisW~D~rAa~~i 224 (458)
T TIGR00316 151 TDPDKVKEELEKAR-EIYEKRDERTKALSDEDVDVFYGCVMCQSFAPTHVCIVTP-DRPSLCGAINWFDARAAAKI 224 (458)
T ss_pred eCHHHHHHHHHHHH-HHHHHHHHHhhhccccCccceecceeccccCCceeEEECC-CCcccccccchhhhhhhhhc
Confidence 35666655554332 2222111 1 23344566655555555544 23444 35568889999999998754
No 73
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=29.62 E-value=92 Score=22.14 Aligned_cols=12 Identities=25% Similarity=0.507 Sum_probs=10.4
Q ss_pred CCeeeEEeeccc
Q psy1574 43 DDIVTLGITNQR 54 (124)
Q Consensus 43 ~~I~~i~is~~~ 54 (124)
..|++||+|++.
T Consensus 140 G~ir~iGvS~~~ 151 (285)
T cd06660 140 GKIRAIGVSNFS 151 (285)
T ss_pred CCccEEEeeCCC
Confidence 469999999987
No 74
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=29.42 E-value=78 Score=24.37 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecc
Q psy1574 20 ILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 53 (124)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~ 53 (124)
+-.....|++.++++ .+..+++|.+||+=+|
T Consensus 71 l~~~~a~av~~ll~~---~~l~~~~i~~iG~HGQ 101 (371)
T COG2377 71 LALLHAQAVAALLAE---QGLLPRDIRAIGCHGQ 101 (371)
T ss_pred HHHHHHHHHHHHHHH---cCCCHHhCceeecCCc
Confidence 444555666666654 6899999999998777
No 75
>COG0400 Predicted esterase [General function prediction only]
Probab=29.28 E-value=1.4e+02 Score=20.94 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=21.4
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeec
Q psy1574 15 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 52 (124)
Q Consensus 15 ~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~ 52 (124)
+|-+++.....+....+.....+.|++.++|..+|+|-
T Consensus 71 ~d~edl~~~~~~~~~~l~~~~~~~gi~~~~ii~~GfSq 108 (207)
T COG0400 71 FDQEDLDLETEKLAEFLEELAEEYGIDSSRIILIGFSQ 108 (207)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCChhheEEEecCh
Confidence 44444444433333333322234789999999999763
No 76
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=28.56 E-value=77 Score=18.94 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=22.8
Q ss_pred ceeEEeeCCCCcccccceeeeccCcHHHHHHHHhhCC
Q psy1574 55 ETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 91 (124)
Q Consensus 55 ~~~v~~d~~~G~pl~p~i~w~D~R~~~~~~~~~~~~~ 91 (124)
..++.+|+ +|+-+-|.+.-....+.+.++++.+.++
T Consensus 39 PaVvvvde-~g~~vIplL~GH~GGan~lA~~iA~~lg 74 (84)
T PF11760_consen 39 PAVVVVDE-DGRFVIPLLGGHRGGANELARQIAELLG 74 (84)
T ss_dssp -EEEEE-T-T--EEEEEE-TTTT-HHHHHHHHHHHTT
T ss_pred CCEEEEeC-CCCEEEEeccCCcchHHHHHHHHHHHhC
Confidence 57788998 5998888876666667888888777664
No 77
>PF14433 SUKH-3: SUKH-3 immunity protein
Probab=28.27 E-value=1.7e+02 Score=18.77 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=23.5
Q ss_pred CCCeeeEEeecccceeEEeeCCCCcccc
Q psy1574 42 RDDIVTLGITNQRETTVVWDLNTGEPLY 69 (124)
Q Consensus 42 ~~~I~~i~is~~~~~~v~~d~~~G~pl~ 69 (124)
..++.-||-...+++++++|+ +|+...
T Consensus 90 ~~~l~PiG~~~~~~~~l~ide-~Grvy~ 116 (142)
T PF14433_consen 90 GTKLFPIGEEHDGHAILAIDE-SGRVYG 116 (142)
T ss_pred CCcEEEEEEecCCCEEEEEeC-CCCEEE
Confidence 368999999999999999999 698753
No 78
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=27.83 E-value=1.4e+02 Score=19.43 Aligned_cols=47 Identities=2% Similarity=-0.005 Sum_probs=26.9
Q ss_pred CCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEee
Q psy1574 10 EGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 61 (124)
Q Consensus 10 ~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d 61 (124)
|.|......+-.+.+..|.+.+++... ...++.|++...+.|..-+.
T Consensus 78 P~~~~~~~~~~~~~L~~~~~~~L~~a~-----~~~~~SIAfPai~tG~~gfP 124 (140)
T cd02905 78 PKYNVKYRTAAENALYSCYRNVLQLAK-----ELGLESIALCVISSEKRNYP 124 (140)
T ss_pred CccCCCCCcHHHHHHHHHHHHHHHHHH-----HcCCCEEEECCcccCCCCCC
Confidence 444433333344455666666655432 24678899998887765443
No 79
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=27.31 E-value=1.6e+02 Score=18.17 Aligned_cols=35 Identities=17% Similarity=0.424 Sum_probs=25.5
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccce
Q psy1574 13 AEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRET 56 (124)
Q Consensus 13 ~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~ 56 (124)
-..|+.++...+.+|.++- +.+-|+-|||+.....
T Consensus 54 ~~~~~~~Vl~el~~c~~~~---------p~~yVRlig~D~~~q~ 88 (99)
T PF00101_consen 54 GCTDPAQVLAELEACLAEH---------PGEYVRLIGFDNKRQR 88 (99)
T ss_dssp TBSSHHHHHHHHHHHHHHS---------TTSEEEEEEEETTTTE
T ss_pred CCCCHHHHHHHHHHHHHhC---------CCceEEEEEEcCcccE
Confidence 3578888888877776552 3578999999987543
No 80
>KOG3441|consensus
Probab=27.30 E-value=53 Score=21.22 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=10.4
Q ss_pred eeEEeeCCCCcccccce
Q psy1574 56 TTVVWDLNTGEPLYNAI 72 (124)
Q Consensus 56 ~~v~~d~~~G~pl~p~i 72 (124)
.+|++|. +|+|+..-|
T Consensus 106 niVLidd-nGnPlGtRI 121 (149)
T KOG3441|consen 106 NIVLIDD-NGNPLGTRI 121 (149)
T ss_pred cEEEECC-CCCcccceE
Confidence 4677777 477776544
No 81
>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.
Probab=27.27 E-value=1.8e+02 Score=18.90 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccceeee
Q psy1574 24 VQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWS 75 (124)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~ 75 (124)
+.+.++++.+ .|.+.+ .|-+|..+.+..++|+ +|+ +..|.
T Consensus 71 l~e~~~~ar~----~glP~~---~ipice~~~~yYcl~~-~g~----V~~W~ 110 (132)
T PF14567_consen 71 LPEVTADARS----IGLPRE---LIPICEDGGDYYCLDQ-EGE----VVYWS 110 (132)
T ss_dssp HHHHHHHHHH----HT--TT---SEEEEEETTEEEEE-T-TS-----EEEE-
T ss_pred HHHHHHHHHH----cCCChh---heeEEecCCcEEEEeC-CCe----EEEec
Confidence 4455555543 266554 3566888899999998 598 45776
No 82
>cd00403 Ribosomal_L1 Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds its own mRNA. Like several other large ribosomal subunit proteins, L1 displays RNA chaperone activity. L1 is one of the largest ribosomal proteins. It is composed of two domains that cycle between open and closed conformations via a hinge motion. The RNA-binding site of L1 is highly conserved, with both mRNA and rRNA binding the same binding site.
Probab=26.40 E-value=2e+02 Score=19.70 Aligned_cols=43 Identities=12% Similarity=0.320 Sum_probs=33.1
Q ss_pred CeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccc
Q psy1574 11 GWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRE 55 (124)
Q Consensus 11 g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~ 55 (124)
|...++++++-+.+..+++.+.+++.. .-...|+.|.+.+.+.
T Consensus 161 G~~~m~~~~l~eNi~~vi~~i~~~~~~--~~~~~i~~v~lktt~~ 203 (208)
T cd00403 161 GKVSMSPEQLVENIEAVINALVKKLPS--KKGQNIKSIYLKTTMG 203 (208)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHhCCc--ccCeEEEEEEEECCCC
Confidence 566789999999999999998876421 2246899999998753
No 83
>KOG2044|consensus
Probab=26.39 E-value=1.4e+02 Score=25.59 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=36.1
Q ss_pred ccccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecc
Q psy1574 4 STISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 53 (124)
Q Consensus 4 ~~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~ 53 (124)
|.+.|+..-+.-.-++++.++.+.|..++.. +.+..+.-+||+|-
T Consensus 61 PC~HPEdkPaP~tedEm~~avFeyiDrlf~m-----vRPRkLLymAIDGV 105 (931)
T KOG2044|consen 61 PCTHPEDKPAPETEDEMFVAVFEYIDRLFSM-----VRPRKLLYMAIDGV 105 (931)
T ss_pred cCCCCCCCCCCccHHHHHHHHHHHHHHHHHh-----ccchheeEEeeccc
Confidence 4566777777777889999999999999875 56788888888764
No 84
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=25.95 E-value=1.3e+02 Score=19.08 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecc
Q psy1574 16 DPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 53 (124)
Q Consensus 16 dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~ 53 (124)
+++++.+++ .+++++ .++++..|.+|+.-..
T Consensus 13 ~~~~i~~ai----~~~l~~---~~~~~~~i~~iasi~~ 43 (121)
T PF01890_consen 13 PAEEIEEAI----EQALAE---AGLSPRSIAAIASIDI 43 (121)
T ss_dssp -HHHHHHHH----HHHHHH---CT--GGGEEEEEESSS
T ss_pred CHHHHHHHH----HHHHHH---cCCChhhccEEEeccc
Confidence 445554444 444443 5778889988876543
No 85
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=25.88 E-value=61 Score=18.31 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=11.9
Q ss_pred eCHHHHHHHHHHHH
Q psy1574 15 QDPMEILQAVQTTM 28 (124)
Q Consensus 15 ~dp~~~~~~~~~~~ 28 (124)
.||.++|.+++..+
T Consensus 44 ~dpr~VW~AlC~~~ 57 (63)
T PF11248_consen 44 VDPRDVWRALCDAF 57 (63)
T ss_pred CCHHHHHHHHHHHc
Confidence 58999999998764
No 86
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=25.85 E-value=1.7e+02 Score=21.93 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=21.6
Q ss_pred eeEEeecccceeEEeeCCCCccccc
Q psy1574 46 VTLGITNQRETTVVWDLNTGEPLYN 70 (124)
Q Consensus 46 ~~i~is~~~~~~v~~d~~~G~pl~p 70 (124)
.|+++++-+.-++++|+ +|+.+.+
T Consensus 177 lG~a~DgDgDRl~~vd~-~G~~l~~ 200 (355)
T cd03084 177 FGVAFDGDADRLIVVDE-NGGFLDG 200 (355)
T ss_pred EEEEEcCCCceeEEECC-CCceeCH
Confidence 48999999999999999 5999876
No 87
>PRK01546 hypothetical protein; Provisional
Probab=25.84 E-value=19 Score=21.37 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=16.0
Q ss_pred eecccceeEEeeCCCCcccccc
Q psy1574 50 ITNQRETTVVWDLNTGEPLYNA 71 (124)
Q Consensus 50 is~~~~~~v~~d~~~G~pl~p~ 71 (124)
+-+|..++-.+|+ +|+-++|-
T Consensus 45 ~~~~L~~i~vvD~-~G~dVTP~ 65 (79)
T PRK01546 45 MLNELKGIKVVNE-QGTDVTPA 65 (79)
T ss_pred HHHHhccceEECC-CCCCCCHH
Confidence 4456677788899 69999885
No 88
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=25.44 E-value=90 Score=24.36 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEE
Q psy1574 21 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVV 59 (124)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~ 59 (124)
-+...+++++++++ .|+...+|.++++||.+...+.
T Consensus 178 ~~~a~~~l~~~l~~---~Gl~~~di~~i~~TGyGR~~i~ 213 (404)
T TIGR03286 178 IESAEEAVERALEE---AGVSLEDVEAIGTTGYGRFTIG 213 (404)
T ss_pred HHHHHHHHHHHHHH---cCCCccceeEEEeeeecHHHHh
Confidence 34556666666554 6777889999999999887774
No 89
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=25.04 E-value=1.7e+02 Score=22.77 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.3
Q ss_pred eeEEeecccceeEEeeCCCCccccc
Q psy1574 46 VTLGITNQRETTVVWDLNTGEPLYN 70 (124)
Q Consensus 46 ~~i~is~~~~~~v~~d~~~G~pl~p 70 (124)
.||++++-+.-+.++|+ +|+.+.+
T Consensus 229 lGia~DgD~DR~~ivd~-~G~~l~~ 252 (445)
T PRK09542 229 IGLAFDGDADRCFVVDE-RGQPVSP 252 (445)
T ss_pred EEEEECCCCceEEEECC-CCCCccH
Confidence 48999999999999999 5999864
No 90
>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction
Probab=24.86 E-value=37 Score=21.24 Aligned_cols=17 Identities=6% Similarity=0.145 Sum_probs=13.5
Q ss_pred eeCHHHHHHHHHHHHHH
Q psy1574 14 EQDPMEILQAVQTTMDR 30 (124)
Q Consensus 14 e~dp~~~~~~~~~~~~~ 30 (124)
-+.++++|+.+++.+=+
T Consensus 15 ~~~~~~LW~~L~~~lPD 31 (104)
T PF05381_consen 15 SISPETLWATLCEILPD 31 (104)
T ss_pred CCCHHHHHHHHHHhCch
Confidence 35789999999988744
No 91
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=24.79 E-value=1.1e+02 Score=19.38 Aligned_cols=20 Identities=5% Similarity=-0.172 Sum_probs=14.3
Q ss_pred CCeeeEEeecccceeEEeeC
Q psy1574 43 DDIVTLGITNQRETTVVWDL 62 (124)
Q Consensus 43 ~~I~~i~is~~~~~~v~~d~ 62 (124)
..++.|++...+.|..-++.
T Consensus 102 ~~~~sIA~P~igtG~~g~~~ 121 (133)
T cd03330 102 LGIESVAFPAMGTGVGGLPK 121 (133)
T ss_pred cCCCEEEECcccccCCCCCH
Confidence 46778999988877655443
No 92
>PRK02539 hypothetical protein; Provisional
Probab=24.72 E-value=21 Score=21.44 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=15.9
Q ss_pred eecccceeEEeeCCCCcccccc
Q psy1574 50 ITNQRETTVVWDLNTGEPLYNA 71 (124)
Q Consensus 50 is~~~~~~v~~d~~~G~pl~p~ 71 (124)
+-+|-.++-.+|+ +|+.++|-
T Consensus 44 ~~~~L~~i~ivD~-~G~dVTP~ 64 (85)
T PRK02539 44 VRHHIEGIKIVDE-EGNDVTPE 64 (85)
T ss_pred HHHHhccceEECC-CCCCCCHH
Confidence 4456677788899 59999875
No 93
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=24.35 E-value=1.1e+02 Score=20.91 Aligned_cols=28 Identities=14% Similarity=0.415 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCeeeEEeeccc
Q psy1574 24 VQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 54 (124)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~ 54 (124)
+..++.+++++ +++.+.+|-.||+||.=
T Consensus 3 ~~~~~~El~~~---a~l~~g~i~VvGcSTSE 30 (172)
T TIGR01440 3 LTTVLEELKDA---SNLKKGDLFVIGCSTSE 30 (172)
T ss_pred HHHHHHHHHHh---hCCCCCCEEEEecchHH
Confidence 45566777765 56778899999998863
No 94
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=24.21 E-value=1.6e+02 Score=17.10 Aligned_cols=41 Identities=17% Similarity=0.076 Sum_probs=26.4
Q ss_pred eeeEEeecccceeEEeeCCCCcccccceeeeccCcHHHHHHH
Q psy1574 45 IVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQV 86 (124)
Q Consensus 45 I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~R~~~~~~~~ 86 (124)
+.||-+-+..-++.++|. +|+.+.+.-.....+.....+.+
T Consensus 3 ilgiD~Ggt~i~~a~~d~-~g~~~~~~~~~~~~~~~~~~~~l 43 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDE-TGKLADPLEVIPRTNKEADAARL 43 (99)
T ss_pred EEEEccCCCeEEEEEECC-CCCEecCEEEEEecCcchHHHHH
Confidence 456677788888889999 59998765544433333333333
No 95
>PF01043 SecA_PP_bind: SecA preprotein cross-linking domain; InterPro: IPR011130 The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain [].; GO: 0017038 protein import, 0016020 membrane; PDB: 3DIN_B 3JUX_A 3IQY_A 2IBM_A 3DL8_A 3JV2_B 3IQM_A 1TF2_A 1TF5_A 1M74_A ....
Probab=24.09 E-value=48 Score=20.88 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccccceeeecc
Q psy1574 19 EILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDT 77 (124)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i~w~D~ 77 (124)
.+...+..+++.-.- -..++--|--.+ -++++|+.||+.+ |-..|.|.
T Consensus 60 ~~~~~i~~AL~A~~l-------~~rd~dYiV~dg---~V~IVDe~TGR~m-~gRrws~G 107 (113)
T PF01043_consen 60 ELYHHINQALKAHHL-------FKRDVDYIVRDG---EVVIVDEFTGRIM-PGRRWSDG 107 (113)
T ss_dssp HHHHHHHHHHHHHHC-------STTTTSEEEETT---EEEEBCTTTTSEB-TT--STTT
T ss_pred HHHHHHHHHHHHHHH-------HhCCcceEEEcC---EEEEEECCCCCcC-CCCcCCch
Confidence 455666666654321 112333444444 4999999889876 55677765
No 96
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=23.75 E-value=1.9e+02 Score=18.02 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=31.1
Q ss_pred eeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcc
Q psy1574 12 WAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEP 67 (124)
Q Consensus 12 ~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~p 67 (124)
.-..||+++-..+.+.+..-. -.....-..|++|+++ -+++|.+++|.-
T Consensus 53 f~~vnP~dy~~vl~~~~~~~~------~~~~~~~~~ia~tAFG-dl~~w~e~~g~~ 101 (109)
T PF08887_consen 53 FWLVNPDDYEDVLDEWLGGTP------LFDPDNYIPIARTAFG-DLYVWGENTGIS 101 (109)
T ss_pred EEEECHHHHHHHHHHHhcCCc------cccCceEEEEEEcccc-cEEEEEcCCceE
Confidence 456899999777666653110 0123466789999996 567777744443
No 97
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=23.52 E-value=66 Score=20.82 Aligned_cols=25 Identities=8% Similarity=-0.163 Sum_probs=19.4
Q ss_pred cceeEEeeCCCCcccccceeeeccCc
Q psy1574 54 RETTVVWDLNTGEPLYNAIVWSDTRA 79 (124)
Q Consensus 54 ~~~~v~~d~~~G~pl~p~i~w~D~R~ 79 (124)
-.+++++|+ +|+.+.+..-+..+|.
T Consensus 80 vPtivFld~-~g~vi~~i~Gy~~~~~ 104 (130)
T cd02960 80 VPRIMFVDP-SLTVRADITGRYSNRL 104 (130)
T ss_pred cCeEEEECC-CCCCcccccccccCcc
Confidence 478899999 6999988776666654
No 98
>PF06228 ChuX_HutX: Haem utilisation ChuX/HutX; InterPro: IPR010413 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2OVI_A 2PH0_B 3FM2_B 2HQV_A.
Probab=23.34 E-value=1.6e+02 Score=19.37 Aligned_cols=35 Identities=17% Similarity=0.420 Sum_probs=26.4
Q ss_pred CCCeeeEEeec------ccceeEEeeCCCCcccccceeeecc
Q psy1574 42 RDDIVTLGITN------QRETTVVWDLNTGEPLYNAIVWSDT 77 (124)
Q Consensus 42 ~~~I~~i~is~------~~~~~v~~d~~~G~pl~p~i~w~D~ 77 (124)
.+.|..|.+-+ ..+++-++|+ +|+.+.-+++..|.
T Consensus 85 ~~~~~~I~fv~~pf~g~~S~sv~F~~~-~G~~~fKvflgRd~ 125 (141)
T PF06228_consen 85 LDNIASIAFVSRPFMGRESYSVQFFDA-DGEAMFKVFLGRDE 125 (141)
T ss_dssp GGGEEEEEEEEEEETTEEEEEEEEEET-TSSEEEEEEE-BST
T ss_pred hhheeeeeeeecccCCCceEEEEEECC-CCCEEEEEEeecCC
Confidence 35677777654 2458999999 69999999988887
No 99
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=23.28 E-value=97 Score=23.58 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeeeEEeeccc
Q psy1574 21 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 54 (124)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~ 54 (124)
-+.+...+++++++ +++...+|.+|++|.--
T Consensus 50 ~~~l~~~i~~~l~~---a~~~~~did~Iavt~GP 80 (345)
T PTZ00340 50 REHILSLVKEALEE---AKITPSDISLICYTKGP 80 (345)
T ss_pred HHHHHHHHHHHHHH---cCCCHHHCCEEEEecCC
Confidence 44455555666553 68888999999998753
No 100
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=23.14 E-value=1.4e+02 Score=22.05 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=23.7
Q ss_pred CCeeeEEeecccceeE--EeeCCCCcccccceeeeccCcHHHHHHHHh
Q psy1574 43 DDIVTLGITNQRETTV--VWDLNTGEPLYNAIVWSDTRADNIVDQVLA 88 (124)
Q Consensus 43 ~~I~~i~is~~~~~~v--~~d~~~G~pl~p~i~w~D~R~~~~~~~~~~ 88 (124)
..|++||||.+....+ +++...-+|..|=|-+.=-..+.+.-.+++
T Consensus 133 G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~ 180 (280)
T COG0656 133 GLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQ 180 (280)
T ss_pred CCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHH
Confidence 4899999999864432 121112556655554443333333334433
No 101
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=22.37 E-value=54 Score=21.79 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=18.9
Q ss_pred eEEeecccceeEEeeCCCCccccccee
Q psy1574 47 TLGITNQRETTVVWDLNTGEPLYNAIV 73 (124)
Q Consensus 47 ~i~is~~~~~~v~~d~~~G~pl~p~i~ 73 (124)
-+|+-|.+.=+|.+|.. |+.|+-+++
T Consensus 101 RLGvPGSGSmlvimD~k-GRiLtaslS 126 (154)
T PF11576_consen 101 RLGVPGSGSMLVIMDSK-GRILTASLS 126 (154)
T ss_dssp E-SSTTS-EEEEEEETT-S-EEEEEEE
T ss_pred cccCCCCccEEEEEcCC-CcEEeeccC
Confidence 36788888889999996 999987764
No 102
>KOG1577|consensus
Probab=22.08 E-value=1.2e+02 Score=22.65 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=21.5
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccce
Q psy1574 15 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRET 56 (124)
Q Consensus 15 ~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~ 56 (124)
.|-.+.|+++.++.+. ..+++||||.+...
T Consensus 135 ~~~~~tW~amE~~~~~------------Gl~rsIGVSNF~~~ 164 (300)
T KOG1577|consen 135 VDRIETWKAMEKLVDE------------GLVRSIGVSNFNIK 164 (300)
T ss_pred chHHHHHHHHHHHHHc------------CCceEeeeecCCHH
Confidence 3566788887766422 48899999988655
No 103
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=22.05 E-value=2.1e+02 Score=17.69 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=25.0
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccce
Q psy1574 13 AEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRET 56 (124)
Q Consensus 13 ~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~ 56 (124)
-..|+.++...+.+|.++- +.+-|+-||++....+
T Consensus 55 ~~~d~~~Vl~ei~~C~~~~---------p~~YVRliG~D~~~q~ 89 (99)
T cd03527 55 GCTDPAQVLREIEACRKAY---------PDHYVRVVGFDNYKQS 89 (99)
T ss_pred CCCCHHHHHHHHHHHHHHC---------CCCeEEEEEEeCCccE
Confidence 3567888877777776542 3478999999987554
No 104
>PF00687 Ribosomal_L1: Ribosomal protein L1p/L10e family; InterPro: IPR002143 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L1 is the largest protein from the large ribosomal subunit. The L1 protein contains two domains: 2-layer alpha/beta domain and a 3-layer alpha/beta domain (interrupts the first domain). In Escherichia coli, L1 is known to bind to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups: Eubacterial L1. Algal and plant chloroplast L1. Cyanelle L1. Archaebacterial L1. Vertebrate L10A. Yeast SSM1. ; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3QOY_A 3BBO_D 1VSA_A 1VSP_A 2NOQ_G 3IZS_A 1S1I_A 3O5H_A 3O58_A 2WRL_C ....
Probab=21.95 E-value=1.5e+02 Score=20.49 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=31.6
Q ss_pred CeeeeCHHHHHHHHHHHHHHHHHH-HHhCCCCCCCeeeEEeeccc
Q psy1574 11 GWAEQDPMEILQAVQTTMDRAIEK-LSAHGLSRDDIVTLGITNQR 54 (124)
Q Consensus 11 g~~e~dp~~~~~~~~~~~~~~~~~-~~~~~~~~~~I~~i~is~~~ 54 (124)
|...++++++.+.+..++..+.+. + .--...|+.|.+.+.+
T Consensus 176 G~~~~~~~~i~eNi~~~i~~i~~~~~---~~g~~~I~~i~ikst~ 217 (220)
T PF00687_consen 176 GHLSMTDEQIVENIKAVIKAIVSKPL---PKGWKNIKSIYIKSTM 217 (220)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHTTT---SSSSGSEEEEEEEESS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhhh---ccCcceEEEEEEECCC
Confidence 566789999999999999998864 2 1123579999998875
No 105
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=21.90 E-value=1.8e+02 Score=20.63 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeE
Q psy1574 16 DPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTV 58 (124)
Q Consensus 16 dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v 58 (124)
+++++++.+...+++-+++ .|. .. ..||+||-..|.+
T Consensus 2 ~~~~~~~~l~~~l~~~~~~---~~~--~~-vvv~lSGGiDSs~ 38 (248)
T cd00553 2 DLEEIINALVLFLRDYLRK---SGF--KG-VVLGLSGGIDSAL 38 (248)
T ss_pred CHHHHHHHHHHHHHHHHHH---hCC--CC-EEEeCCCcHHHHH
Confidence 6788999999999998875 332 23 4688888655553
No 106
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=21.89 E-value=98 Score=13.90 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=13.4
Q ss_pred eecccceeEEeeCCCCccc
Q psy1574 50 ITNQRETTVVWDLNTGEPL 68 (124)
Q Consensus 50 is~~~~~~v~~d~~~G~pl 68 (124)
+.+....+..+|.++|+.+
T Consensus 11 ~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 11 VGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred EEcCCCEEEEEEcccCcEE
Confidence 4445578888888778764
No 107
>PF00986 DNA_gyraseB_C: DNA gyrase B subunit, carboxyl terminus The Prosite motif does not match this Pfam entry.; InterPro: IPR002288 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions, domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents the C-terminal region (C-terminal part of domain 2) of subunit B found in topoisomerase II (gyrB) and topoisomerase IV (parE), which are primarily of bacterial origin. It does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. This region is involved in subunit interaction, which accounts for the difference between subunit B and single polypeptide topoisomerase II. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 3LTN_D 3RAF_C 3FOF_C 3RAE_C 3KSA_D 3RAD_C 3FOE_D 3KSB_D 3K9F_D 2XCT_D ....
Probab=21.73 E-value=45 Score=18.95 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=11.1
Q ss_pred CCeeeeCHHHHHHHH
Q psy1574 10 EGWAEQDPMEILQAV 24 (124)
Q Consensus 10 ~g~~e~dp~~~~~~~ 24 (124)
-|-.|.||+++|+..
T Consensus 12 KGLGEM~p~qL~eTT 26 (65)
T PF00986_consen 12 KGLGEMNPDQLWETT 26 (65)
T ss_dssp SSGGGS-HHHHHHHH
T ss_pred cccccCCHHHHHHHc
Confidence 367789999999875
No 108
>PF08368 FAST_2: FAST kinase-like protein, subdomain 2; InterPro: IPR013579 This domain represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases (2.7.1 from EC) that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins. This subdomain is often found associated with the FAST kinase-like protein, subdomain 2.
Probab=21.72 E-value=1.9e+02 Score=17.17 Aligned_cols=41 Identities=27% Similarity=0.308 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeeccccee---EEeeCCCCccc
Q psy1574 20 ILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETT---VVWDLNTGEPL 68 (124)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~---v~~d~~~G~pl 68 (124)
....+.+++++++.. .+-++.=.++-++.++ +.+|+ +|+|+
T Consensus 49 ~~~~v~~~L~~lLg~-------~~~~~~~v~tp~gy~iD~E~~lD~-~~~pl 92 (93)
T PF08368_consen 49 LQQEVQEALKSLLGG-------ENYFRSNVITPYGYTIDFEIVLDK-NGKPL 92 (93)
T ss_pred HHHHHHHHHHHHhCC-------ccceEEccccCCCceEEEEEEECC-CCCcC
Confidence 555666666666521 1223322233334333 78999 59987
No 109
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=21.71 E-value=1.7e+02 Score=20.76 Aligned_cols=33 Identities=27% Similarity=0.480 Sum_probs=22.5
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEe
Q psy1574 15 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 50 (124)
Q Consensus 15 ~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~i 50 (124)
.+.+...+.+.+++.+++++ .+.+..+|..+.+
T Consensus 35 ~~~~~~~~~i~~~i~~~~~~---~~~~~~~i~~~~~ 67 (271)
T PF01869_consen 35 VGFEEAMENIKEAIEEALSQ---AGLSPDDIAAICI 67 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HTTSTTCCCEEEE
T ss_pred CCcchhhhHHHHHHHHHHHH---cCCCccccceeee
Confidence 34567778888888888776 4666666665543
No 110
>PRK09604 UGMP family protein; Validated
Probab=21.69 E-value=1.1e+02 Score=22.97 Aligned_cols=29 Identities=21% Similarity=0.502 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeeeEEeec
Q psy1574 21 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 52 (124)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~ 52 (124)
-+.+...+++++++ .++++.+|.+|+++.
T Consensus 52 ~~~l~~~i~~~L~~---~~~~~~did~iavt~ 80 (332)
T PRK09604 52 VENIVPLIEEALKE---AGLTLEDIDAIAVTA 80 (332)
T ss_pred HHHHHHHHHHHHHH---cCCCHHHCCEEEEec
Confidence 34455555666554 688889999999986
No 111
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=21.67 E-value=2.1e+02 Score=17.66 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccce
Q psy1574 17 PMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRET 56 (124)
Q Consensus 17 p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~ 56 (124)
|.++..++.+.+++.+++ |.....|..+-|+=....
T Consensus 53 p~~~~~aie~g~~~al~~----G~lG~pv~dv~V~l~~~~ 88 (115)
T cd01684 53 PRSFQNAVEETVRETLQQ----GLYGWEVTDCKVTLTYGR 88 (115)
T ss_pred CHHHHHHHHHHHHHHHhc----CCCCCCEeeEEEEEEEee
Confidence 678899999999888863 532777777776655443
No 112
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=21.61 E-value=1.1e+02 Score=22.78 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeeeEEeec
Q psy1574 23 AVQTTMDRAIEKLSAHGLSRDDIVTLGITN 52 (124)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~I~~i~is~ 52 (124)
.+...+++++++ +|+++.+|.+|+++.
T Consensus 48 ~l~~~i~~~l~~---~~~~~~did~Iavt~ 74 (322)
T TIGR03722 48 VAPKLIKEALEE---AGVSLEDIDAVAFSQ 74 (322)
T ss_pred HHHHHHHHHHHH---cCCCHHHCCEEEEec
Confidence 344556666654 688889999999995
No 113
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=21.59 E-value=1e+02 Score=22.67 Aligned_cols=29 Identities=14% Similarity=0.330 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeeeEEeec
Q psy1574 21 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 52 (124)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~ 52 (124)
-+.+...++++++ ++++++.+|.+|+++.
T Consensus 49 ~~~l~~~i~~~l~---~~~~~~~did~iav~~ 77 (305)
T TIGR00329 49 AENIPPLLERALI---ESNVDKSEIDLIAYTQ 77 (305)
T ss_pred HHHHHHHHHHHHH---HcCCCHHHCCEEEEec
Confidence 3344444555554 3688889999999886
No 114
>KOG0180|consensus
Probab=21.57 E-value=1.8e+02 Score=20.06 Aligned_cols=35 Identities=11% Similarity=0.273 Sum_probs=24.6
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeC
Q psy1574 15 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDL 62 (124)
Q Consensus 15 ~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~ 62 (124)
.+||++++.+.+++-.+++ + =++||++..+..+.+
T Consensus 157 mepd~LFetisQa~Lna~D--------R-----DalSGwGa~vyiI~k 191 (204)
T KOG0180|consen 157 MEPDELFETISQALLNAVD--------R-----DALSGWGAVVYIITK 191 (204)
T ss_pred CCHHHHHHHHHHHHHhHhh--------h-----hhhccCCeEEEEEcc
Confidence 5799999988777655443 2 256788877777766
No 115
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=21.53 E-value=1.1e+02 Score=16.55 Aligned_cols=30 Identities=7% Similarity=0.210 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeec
Q psy1574 20 ILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 52 (124)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~ 52 (124)
.-+++.+.+.+++.. ..|++++.|. |.|.-
T Consensus 16 qk~~l~~~it~~l~~--~lg~p~~~v~-V~i~e 45 (64)
T PRK01964 16 KIKNLIREVTEAISA--TLDVPKERVR-VIVNE 45 (64)
T ss_pred HHHHHHHHHHHHHHH--HhCcChhhEE-EEEEE
Confidence 344444444444332 1467777765 44443
No 116
>PRK14878 UGMP family protein; Provisional
Probab=21.38 E-value=1e+02 Score=22.92 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCeeeEEeec
Q psy1574 22 QAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 52 (124)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~ 52 (124)
+.+...+++++++ +|+++.+|.+|+++.
T Consensus 46 ~~l~~~i~~~l~~---a~~~~~did~Iavt~ 73 (323)
T PRK14878 46 EVAPELLRKALEK---AGISIEDIDAVAVSQ 73 (323)
T ss_pred HHHHHHHHHHHHH---cCCCHHHCCEEEEec
Confidence 3455666666654 688889999999995
No 117
>PF12860 PAS_7: PAS fold
Probab=21.24 E-value=60 Score=19.55 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=13.5
Q ss_pred ecccceeEEeeCCCCccc
Q psy1574 51 TNQRETTVVWDLNTGEPL 68 (124)
Q Consensus 51 s~~~~~~v~~d~~~G~pl 68 (124)
.+..+|++++|. +|+.+
T Consensus 2 d~l~~Gv~v~D~-~~rl~ 18 (115)
T PF12860_consen 2 DSLPQGVAVFDS-DGRLV 18 (115)
T ss_pred CCcCceEEEEcC-CCeEE
Confidence 456789999999 58775
No 118
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=21.10 E-value=2.5e+02 Score=18.27 Aligned_cols=53 Identities=21% Similarity=0.398 Sum_probs=32.7
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEeeCCCCcccc-cceeeeccCc
Q psy1574 15 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLY-NAIVWSDTRA 79 (124)
Q Consensus 15 ~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d~~~G~pl~-p~i~w~D~R~ 79 (124)
.+++++.+.+.+.++++..+. + .. +|||+..+ ++|.+.|..+. |...|.+-.-
T Consensus 30 ~~~~~~~~~l~~~i~~~~~~~---~----~~-gIgi~~pG----~v~~~~g~i~~~~~~~~~~~~l 83 (179)
T PF00480_consen 30 TSPEELLDALAELIERLLADY---G----RS-GIGISVPG----IVDSEKGRIISSPNPGWENIPL 83 (179)
T ss_dssp SSHHHHHHHHHHHHHHHHHHH---T----CE-EEEEEESS----EEETTTTEEEECSSGTGTTCEH
T ss_pred CCHHHHHHHHHHHHHHHHhhc---c----cc-cEEEeccc----cCcCCCCeEEecCCCCcccCCH
Confidence 578899999999999988763 1 12 77777654 35553233332 3445665433
No 119
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=21.01 E-value=1.5e+02 Score=22.08 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeeeEEee
Q psy1574 21 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 51 (124)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is 51 (124)
-..+..++++++++ +|+.+++|..+-+.
T Consensus 84 e~v~f~av~~LL~k---tgv~p~dIdiLVvn 111 (290)
T PF08392_consen 84 EMVIFGAVDDLLAK---TGVKPSDIDILVVN 111 (290)
T ss_pred HHHHHHHHHHHHHH---cCCCHHHCCEEEEE
Confidence 33555666777765 78999888755443
No 120
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=20.96 E-value=2.1e+02 Score=18.61 Aligned_cols=36 Identities=6% Similarity=0.011 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccceeEEee
Q psy1574 17 PMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 61 (124)
Q Consensus 17 p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~~v~~d 61 (124)
.+.+.+++..+++.+.+ ..++.|++.+.+.|+.-+.
T Consensus 99 ~~~L~~~~~~~L~~a~~---------~~~~sIA~P~i~tG~~g~p 134 (147)
T cd02906 99 RDLLAKCYLSCLDLAEK---------AGLKSIAFCCISTGLFGFP 134 (147)
T ss_pred HHHHHHHHHHHHHHHHH---------cCCCEEEECcccccCCCCC
Confidence 34455555555544432 4678899998887765544
No 121
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=20.96 E-value=1.6e+02 Score=22.02 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=10.5
Q ss_pred CCeeeEEeecccc
Q psy1574 43 DDIVTLGITNQRE 55 (124)
Q Consensus 43 ~~I~~i~is~~~~ 55 (124)
..|+.||+|+...
T Consensus 160 GkIr~iGvSn~~~ 172 (346)
T PRK09912 160 GKALYVGISSYSP 172 (346)
T ss_pred CCeeEEEecCCCH
Confidence 4899999999653
No 122
>PF02914 DDE_2: Bacteriophage Mu transposase; InterPro: IPR004189 This transposase is essential for integration, replication-transposition and excision of Bacteriophage Mu DNA. Transposition requires transposase and a transposition enhancer, and the DNA can be transposed into multiple sites in bacterial genomes. The crystal structure of the core domain of Mu transposase, MuA, has been determined. The first of two subdomains contains the active site and, despite very limited sequence homology, exhibits a striking similarity to the core domain of Human immunodeficiency virus 1 integrase. The enzymatic activity of MuA is known to be activated by formation of a DNA-bound tetramer of the protein []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 1BCO_A 1BCM_B.
Probab=20.63 E-value=1e+02 Score=21.96 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=20.3
Q ss_pred eeEEeecccceeEEeeCCCCcccccce-eeeccCcHHH
Q psy1574 46 VTLGITNQRETTVVWDLNTGEPLYNAI-VWSDTRADNI 82 (124)
Q Consensus 46 ~~i~is~~~~~~v~~d~~~G~pl~p~i-~w~D~R~~~~ 82 (124)
..|..+++.+.+..=-. +|++++|.+ .|.|.|+...
T Consensus 8 E~VngDgh~fdvfV~~p-~G~i~RP~~~~wqDv~SrkI 44 (219)
T PF02914_consen 8 EWVNGDGHTFDVFVRWP-NGKIIRPKLWAWQDVRSRKI 44 (219)
T ss_dssp TEEEEEEEE-SB-EE-T-TS-EE--EEEEEEETTT--E
T ss_pred hhhhcCCcEEEEEEEcc-CCCEeeeEEEEEEEccCCce
Confidence 35677777777665557 599999854 6999988653
No 123
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=20.63 E-value=2.6e+02 Score=21.65 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=20.4
Q ss_pred eeEEeecccceeEEeeCCCCccccc
Q psy1574 46 VTLGITNQRETTVVWDLNTGEPLYN 70 (124)
Q Consensus 46 ~~i~is~~~~~~v~~d~~~G~pl~p 70 (124)
.||++++-+.-+.++|+ +|+.+.+
T Consensus 231 lgia~DgDaDR~~vvd~-~G~~~~g 254 (441)
T cd05805 231 FGVIIDPNGERLILVDE-AGRVISD 254 (441)
T ss_pred EEEEEcCCCCEEEEECC-CCCEECh
Confidence 48999999999999999 6998743
No 124
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=20.42 E-value=3.2e+02 Score=19.27 Aligned_cols=33 Identities=18% Similarity=0.111 Sum_probs=18.8
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeeccc
Q psy1574 15 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 54 (124)
Q Consensus 15 ~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~ 54 (124)
.+++++.+.+.++++++... ...+.+|||+.-+
T Consensus 34 ~~~~~~~~~i~~~i~~~~~~-------~~~~~gIgv~~pG 66 (256)
T PRK13311 34 EDYPQLLQILRDLTEEADTY-------CGVQGSVGIGIPG 66 (256)
T ss_pred cCHHHHHHHHHHHHHHHHhh-------cCCCceEEEEecC
Confidence 35677777777666665321 1234467776543
No 125
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=20.41 E-value=1.9e+02 Score=21.84 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=27.5
Q ss_pred CCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy1574 10 EGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD 43 (124)
Q Consensus 10 ~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (124)
..|...+.+++-+++..=+++++++++++|+.++
T Consensus 94 ~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd 127 (332)
T PF07745_consen 94 AAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPD 127 (332)
T ss_dssp TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ES
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCcc
Confidence 4588889999999999999999999988887654
No 126
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=20.36 E-value=2.2e+02 Score=19.61 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCeeeEEeeccc
Q psy1574 24 VQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 54 (124)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~ 54 (124)
..+++++++++ +|+++++|.+|-+++..
T Consensus 11 ~~~A~~~al~~---ag~~~~~i~~li~~~~~ 38 (254)
T cd00327 11 GFEAAEQAIAD---AGLSKGPIVGVIVGTTG 38 (254)
T ss_pred HHHHHHHHHHH---cCCCCCCceEEEEEECC
Confidence 45566666664 68888899988887764
No 127
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=20.26 E-value=1.4e+02 Score=22.11 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=23.4
Q ss_pred cccCCCCeeeeCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccce
Q psy1574 5 TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRET 56 (124)
Q Consensus 5 ~~~~~~g~~e~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~~ 56 (124)
+++|+| -.|||+.-+| +..+.+ + ..|+.+|||.+..+
T Consensus 126 iHRPDp---Lmd~eeVAeA----f~~L~~----s----GKVr~fGVSNf~p~ 162 (298)
T COG4989 126 IHRPDP---LMDAEEVAEA----FTHLHK----S----GKVRHFGVSNFNPA 162 (298)
T ss_pred ccCCcc---cCCHHHHHHH----HHHHHh----c----CCeeeeecCCCCHH
Confidence 345554 5678876544 444433 2 48899999988654
No 128
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=20.22 E-value=1.5e+02 Score=17.55 Aligned_cols=49 Identities=22% Similarity=0.402 Sum_probs=31.6
Q ss_pred CCCCeeeEEeecccceeEEeeCCCCcccccce-----eeeccCcHHHHHHHHhhCC
Q psy1574 41 SRDDIVTLGITNQRETTVVWDLNTGEPLYNAI-----VWSDTRADNIVDQVLAKFP 91 (124)
Q Consensus 41 ~~~~I~~i~is~~~~~~v~~d~~~G~pl~p~i-----~w~D~R~~~~~~~~~~~~~ 91 (124)
..++|.+||-+.--.+++.- . .|+|-...+ --.-.|...+++.+.++++
T Consensus 19 PfEDvLgvGh~~G~sSiiVP-G-sGe~NfDs~e~NP~et~kqRrE~EV~~LLeKip 72 (80)
T PF08149_consen 19 PFEDVLGVGHSKGFSSIIVP-G-SGEPNFDSLEANPFETKKQRREREVRSLLEKIP 72 (80)
T ss_pred chHHeeEeeccCceeEEecc-C-CCCCCCCcccCCcccchhHHhHHHHHHHHHhCC
Confidence 34688889886655555544 4 398854433 3345666777888887775
No 129
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=20.19 E-value=2.2e+02 Score=20.95 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeEEeecccc
Q psy1574 17 PMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRE 55 (124)
Q Consensus 17 p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~is~~~~ 55 (124)
..++.+.+...++.++..+.+.|-+ .-..|||+||-.|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~g~~-~~~i~igCtGG~H 257 (288)
T PRK05416 220 VEEFLDKIRDLLEFWLPGYEREGKS-YLTIAIGCTGGQH 257 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEEecCCCcc
Confidence 3467888888888877776544533 2334788877554
No 130
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=20.18 E-value=1.1e+02 Score=20.52 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=25.6
Q ss_pred CcHHHHHHHHhhCCCCchhhhhhhhCCCCCCcCHHHHHHHHhHccC
Q psy1574 78 RADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVS 123 (124)
Q Consensus 78 R~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P 123 (124)
-+++..+++.+.+. +|-.|...-++..--.|..|+++..|
T Consensus 72 ~aq~v~keLt~~y~------vYivtaamdhp~s~~dK~eWl~E~FP 111 (180)
T COG4502 72 FAQTVLKELTSIYN------VYIVTAAMDHPKSCEDKGEWLKEKFP 111 (180)
T ss_pred cHHHHHHHHHhhhe------EEEEEeccCCchhHHHHHHHHHHHCC
Confidence 34555566655432 34345555556666789999999988
Done!