RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1574
(124 letters)
>2w40_A Glycerol kinase, putative; closed conformation, malaria,
transferase, sugar kinase/HSP70/actin superfamily, open
conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Length = 503
Score = 161 bits (409), Expect = 1e-48
Identities = 47/117 (40%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 6 ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 65
+ GW E DP+EI+ + M+ I+ L + I +GITNQRET ++WD TG
Sbjct: 38 KCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKD-KYTSVIIKCIGITNQRETVIIWDRITG 96
Query: 66 EPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNV 122
+PLYNAIVW DTR + +V + A + + ++ G + YFSA K+ WLIQN
Sbjct: 97 KPLYNAIVWLDTRVEELVTEFSA---KYNNNDIQKKTGTYFNTYFSAFKILWLIQNN 150
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif,
actin- like ATPase domain, transferase; 2.30A
{Cellulomonas SP}
Length = 504
Score = 151 bits (385), Expect = 4e-45
Identities = 52/117 (44%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 6 ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 65
I P+ GW E +P +I V+ + A+ + L+ +DI +GITNQRET VVWD TG
Sbjct: 36 IFPRAGWVEHNPEQIWNNVREVVGLALTR---GNLTHEDIAAVGITNQRETAVVWDKTTG 92
Query: 66 EPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNV 122
+P+YNAIVW DTR IVD++ D+ + K I GLP++ YFS K+ W++ NV
Sbjct: 93 KPVYNAIVWQDTRTQKIVDELGG---DEGAEKYKSIVGLPLATYFSGPKIKWILDNV 146
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.80A {Thermus thermophilus}
Length = 495
Score = 149 bits (378), Expect = 4e-44
Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 6 ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 65
+ P+ GW E DP+EI + + + G +++ LGITNQRETT++WD TG
Sbjct: 36 LYPKPGWVEHDPLEIWETTLWAAREVLRR---AGAEAGEVLALGITNQRETTLLWDRKTG 92
Query: 66 EPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNV 122
+PL+NAIVW D R + + + A + + GL PYFS KL WL++NV
Sbjct: 93 KPLHNAIVWQDRRTTPLCEALRA---KGLEPLFRERTGLLFDPYFSGTKLVWLLENV 146
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti
binding, phosphoprotein, transferase; 1.73A
{Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X
3h45_X 3d7e_O 1r59_O 1xup_O
Length = 506
Score = 148 bits (377), Expect = 4e-44
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 6 ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 65
P+ GW E + EI +VQ+ + A + G+ + I +GITNQRETTVVWD TG
Sbjct: 39 YFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRPEAIAGIGITNQRETTVVWDKTTG 95
Query: 66 EPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNV 122
+P+ NAIVW ++ I DQ+ D + + GL + YFSA K+ WL+ N+
Sbjct: 96 QPIANAIVWQSRQSSPIADQLKV---DGHTEMIHEKTGLVIDAYFSATKVRWLLDNI 149
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation,
microfluidics,; 2.00A {Escherichia coli} SCOP: c.55.1.4
c.55.1.4 PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G*
1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y*
1gll_Y*
Length = 510
Score = 148 bits (377), Expect = 5e-44
Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
Query: 6 ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 65
I P+ GW E DPMEI +T+ + K +S D I +GITNQRETT+VW+ TG
Sbjct: 37 IYPKPGWVEHDPMEIWATQSSTLVEVLAK---ADISSDQIAAIGITNQRETTIVWEKETG 93
Query: 66 EPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNV 122
+P+YNAIVW R I + + D +DY++ GL + PYFS K+ W++ +V
Sbjct: 94 KPIYNAIVWQCRRTAEICEHLKR---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHV 147
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
transferase; 2.33A {Sinorhizobium meliloti}
Length = 520
Score = 148 bits (377), Expect = 6e-44
Identities = 53/117 (45%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
Query: 6 ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 65
P+ GW E DP EI Q V +T+ AIEK G++ +DI +GITNQRET VVWD TG
Sbjct: 60 HFPKSGWVEHDPEEIWQTVVSTVKEAIEK---SGITANDIAAIGITNQRETVVVWDRETG 116
Query: 66 EPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNV 122
+P++NAIVW D R D++ + GL + PYFS KL+WL+ NV
Sbjct: 117 KPIHNAIVWQDRRTAAFCDKLKK---KGLEKTFVKKTGLLLDPYFSGTKLNWLLSNV 170
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism,
nucleotide-binding, transferase, struct genomics; HET:
MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Length = 501
Score = 148 bits (376), Expect = 6e-44
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 6 ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 65
PQ GW E D EI +V M I + + + D I +GITNQRETTVVWD +TG
Sbjct: 40 YFPQSGWVEHDANEIWTSVLAVMTEVINE---NDVRADQIAGIGITNQRETTVVWDKHTG 96
Query: 66 EPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNV 122
P+Y+AIVW + +I ++ + + GL + PYF+ K+ W++ NV
Sbjct: 97 RPIYHAIVWQSRQTQSICSELKQ---QGYEQTFRDKTGLLLDPYFAGTKVKWILDNV 150
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL
metabolism, nucleotide-binding, transferase; 2.40A
{Thermococcus kodakarensis}
Length = 497
Score = 143 bits (364), Expect = 3e-42
Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 8/117 (6%)
Query: 6 ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 65
P+ GW E +P EI A + AI+ + + I +G+TNQRETT+VWD G
Sbjct: 37 HYPRPGWVEHNPEEIWDAQLRAIKDAIQS---ARIEPNQIAAIGVTNQRETTLVWD-KDG 92
Query: 66 EPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNV 122
+PLYNAIVW R +V++ + + + +K GL YFSA KL WL+ NV
Sbjct: 93 KPLYNAIVWQCRRTAEMVEE-IKR---EYGTMIKEKTGLVPDAYFSASKLKWLLDNV 145
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 121 bits (305), Expect = 9e-34
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 10/118 (8%)
Query: 5 TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNT 64
I + G AE+DP I AVQ + +K I + ++Q + + +
Sbjct: 37 LIQTKVGQAEEDPKLIFDAVQEIIFDLTQK------IDGKIAAISWSSQMHSLIGLGSD- 89
Query: 65 GEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNV 122
E L N+I W+D A +IV + + G+P+ P KL WL
Sbjct: 90 DELLTNSITWADNCAKSIVQDAKNRGF---AQQIYRKTGMPMHPMAPIYKLLWLKNKK 144
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 101 bits (255), Expect = 9e-27
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 7/118 (5%)
Query: 4 STISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLN 63
+ SP GWAE+DP + + + G S + +T V+ D
Sbjct: 39 TLSSPHPGWAEEDPAQWWDNARAVLAELKTT---AGESDWRPGGICVTGMLPAVVLLDDR 95
Query: 64 TGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQN 121
G L +I SD R + V ++ A+ + G V+ KL W+ ++
Sbjct: 96 -GAVLRPSIQQSDGRCGDEVAELRAEVDSEA---FLARTGNGVTQQLVTAKLRWIERH 149
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 99.3 bits (248), Expect = 8e-26
Identities = 18/117 (15%), Positives = 45/117 (38%), Gaps = 11/117 (9%)
Query: 6 ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 65
+ Q G+ D + A++ +++ + I ++GI V+ D G
Sbjct: 42 LHSQNGYVTWDVDSLESAIRLGLNKV-------CAAGIAIDSIGIDTWGVDFVLLDQQ-G 93
Query: 66 EPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNV 122
+ + + + D+R + ++ Q + K + G+ P+ + +L L +
Sbjct: 94 QRVGLPVAYRDSRTNGLMAQAQQQLG---KRDIYQRSGIQFLPFNTLYQLRALTEQQ 147
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 98.1 bits (245), Expect = 2e-25
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 8/118 (6%)
Query: 4 STISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLN 63
T G EQD + AVQ G+ + + ++ Q + + D +
Sbjct: 37 ETYGDGNGPVEQDAGDWYDAVQR----IASSWWQSGVDARRVSAIVLSGQMQNFLPLDQD 92
Query: 64 TGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQN 121
EPL+ A+++SD R +++ A+ + L P++ KL + +
Sbjct: 93 -HEPLHRAVLYSDKRPLKEAEEINARHGADN---LWSALENPMTAASILPKLVFWRAS 146
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 93.4 bits (233), Expect = 9e-24
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 11/118 (9%)
Query: 4 STISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLN 63
+ P W+EQDP + QA M ++ S D+ LGI Q + D
Sbjct: 32 TVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSL-----QDVKALGIAGQMHGATLLDAQ 86
Query: 64 TGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQN 121
L AI+W+D R + A+ P I G + P F+A KL W+ ++
Sbjct: 87 -QRVLRPAILWNDGRCAQECTLLEARVPQSRV-----ITGNLMMPGFTAPKLLWVQRH 138
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 82.0 bits (203), Expect = 1e-19
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 19/129 (14%)
Query: 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 61
+I+ P+ + EQ I QAV + A+ + ++ + LG + VV D
Sbjct: 35 EITMFKPKADFVEQSSENIWQAVCNAVRDAVNQ---ADINPIQVKGLGFDATC-SLVVLD 90
Query: 62 LNTGEPL---------YNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSA 112
G PL N IVW D RA +++ + K + G +SP
Sbjct: 91 KE-GNPLTVSPSGRNEQNVIVWMDHRAITQAERI-----NATKHPVLEFVGGVISPEMQT 144
Query: 113 LKLSWLIQN 121
KL WL Q+
Sbjct: 145 PKLLWLKQH 153
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 81.3 bits (201), Expect = 2e-19
Identities = 21/131 (16%), Positives = 51/131 (38%), Gaps = 16/131 (12%)
Query: 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 61
+ I WA Q P++ ++ + T++ +++ G+ DD++ +G+ T + D
Sbjct: 47 PNTNIKLGHEWALQHPLDYVEVLTTSVPAVMKE---SGVDADDVIGIGVDFTACTMLPVD 103
Query: 62 LNTGEPL-----------YNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYF 110
G+PL +W A + + + + + +L G +S +
Sbjct: 104 -EEGQPLCLLAQYKDNPHSWVKLWKHHAAQDKANAINEMAEKRGEAFLP-RYGGKISSEW 161
Query: 111 SALKLSWLIQN 121
K+ ++
Sbjct: 162 MIAKVWQILDE 172
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 77.0 bits (190), Expect = 6e-18
Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 22/128 (17%)
Query: 7 SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGE 66
+ DP A Q ++A DD+ L + Q+ V+ D G
Sbjct: 35 AKHPNGTSVDPSYWWSAFQEAAEQAGGL--------DDVSALAVGGQQHGMVILDNQ-GN 85
Query: 67 PLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKP-------------ICGLPVSPYFSAL 113
+ +A++W+DT + ++ K +P G ++
Sbjct: 86 VIRDAMLWNDTSSAPQAAALIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLT 145
Query: 114 KLSWLIQN 121
K++W+ +N
Sbjct: 146 KVAWVAEN 153
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 66.8 bits (163), Expect = 3e-14
Identities = 12/116 (10%), Positives = 30/116 (25%), Gaps = 19/116 (16%)
Query: 8 PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEP 67
+G D + + + + R + + T+ G
Sbjct: 41 EIDGIRRLDAPDTGRWLLDVLSRYADH---------PVTTIVPVGHGAGIAALT--DGRL 89
Query: 68 LYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYF--SALKLSWLIQN 121
+ + + + + ++ ++ G P P +L WL Q
Sbjct: 90 AFPPLDYEQSIPEAVMADYRSQRDPFA------RTGSPALPDGLNIGSQLWWLDQL 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 5e-09
Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 41/133 (30%)
Query: 4 STISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI----------------VT 47
+++ P +D +E + V + M LS L+++ + V
Sbjct: 317 TSLPPS---ILEDSLENNEGVPSPM------LSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 48 LGITNQRETTVVWDLNTGEP--LYNAIVW-SDTRADNIVDQVLAKFPDQDKDYLKPICG- 103
+ + N + VV +G P LY + +A + +DQ F ++ K
Sbjct: 368 ISLVNGAKNLVV----SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER-----KLKFSN 418
Query: 104 --LPVS-PYFSAL 113
LPV+ P+ S L
Sbjct: 419 RFLPVASPFHSHL 431
Score = 29.2 bits (65), Expect = 0.38
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 25/69 (36%)
Query: 28 MDRAIEKLSAHGLSRDDIVTLGITNQRETTVVW---DLNTGEPLYNAIVWSDTR------ 78
+ A + ++ L ++++ + D+ P+Y+ SD R
Sbjct: 432 LVPASDLINKD-LVKNNVS-------------FNAKDI--QIPVYDTFDGSDLRVLSGSI 475
Query: 79 ADNIVDQVL 87
++ IVD ++
Sbjct: 476 SERIVDCII 484
>2etj_A Ribonuclease HII, RNAse HII; TM0915, ribonuclease HII (EC 3.1.26.4)
(RNAse HII), structur genomics, joint center for
structural genomics; 1.74A {Thermotoga maritima} SCOP:
c.55.3.1 PDB: 3o3g_A* 3o3f_A* 3o3h_A*
Length = 250
Score = 27.6 bits (62), Expect = 1.1
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 3 ISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLS 36
I SP+E D I A + M+RA+E LS
Sbjct: 81 IGIASPEE----IDLYNIFNATKLAMNRALENLS 110
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2
d.41.2.2
Length = 449
Score = 26.8 bits (59), Expect = 2.0
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 89 KFPDQDKDYLKPICGLPVSPYFSALKLSWL 118
+ ++ +L S F LSWL
Sbjct: 87 RLSKKENIWLAGNTFYGRSQIFEPEFLSWL 116
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 27.0 bits (60), Expect = 2.3
Identities = 7/26 (26%), Positives = 8/26 (30%), Gaps = 5/26 (19%)
Query: 55 ETTVVWDLNTGEPLY-----NAIVWS 75
V L EP +VWS
Sbjct: 293 NGFTVLSLGNDEPTLSLDPVGKLVWS 318
>3cyg_A Uncharacterized protein; PSI-II, 10495J, fervibacterium nodosum,
structural genomics, protein structure initiative; 2.61A
{Fervidobacterium nodosum rt17-b1}
Length = 222
Score = 26.5 bits (58), Expect = 2.5
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 10/69 (14%)
Query: 41 SRDDIVTLGIT----------NQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 90
D ++ + T DL + L + + D I +L +
Sbjct: 84 EGKDFLSFVVYYYQFTGGAHGITFFETYNIDLKNSKVLKLYDIIKEEAEDTIKSNILKQI 143
Query: 91 PDQDKDYLK 99
+ D+
Sbjct: 144 EQNNTDFFP 152
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein
structure initiative, NE SGX research center for
structural genomics, nysgxrc; HET: MSE RB0; 2.30A
{Escherichia coli} PDB: 2ajt_A 2hxg_A
Length = 500
Score = 26.5 bits (58), Expect = 2.7
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 18 MEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI--TNQRETTVVWDLNTGEPLYNAIVWS 75
E L+ V + + L+ +V + T T + D N + +VW
Sbjct: 21 PETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWL 80
Query: 76 DT 77
T
Sbjct: 81 HT 82
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Length = 483
Score = 26.3 bits (59), Expect = 2.7
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 75 SDTRA-DNIVDQVLAKFPDQDKDY 97
SD V++ L +DY
Sbjct: 413 SDEATLLKFVNEALDNNEQSVEDY 436
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi
protein complex, ligase, protein biosynthesis; HET: ADP;
2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Length = 478
Score = 26.3 bits (59), Expect = 2.9
Identities = 4/24 (16%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 75 SDTRA-DNIVDQVLAKFPDQDKDY 97
+D +V ++ K P + +
Sbjct: 416 TDENQIKELVKKIFEKHPKEVERL 439
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 26.2 bits (58), Expect = 2.9
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 10 EGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 48
GW + + + + RA+ + L D+
Sbjct: 123 PGWTRKGEIVFYDELHEPLTRAVCAWAGVPLPDDEAGNR 161
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA
complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga
maritima}
Length = 482
Score = 26.3 bits (59), Expect = 3.2
Identities = 5/24 (20%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 75 SDTRA-DNIVDQVLAKFPDQDKDY 97
+D + + +V + + + P +DY
Sbjct: 420 NDEKLIEELVKKAMEQNPKAVQDY 443
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet
cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation,
beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga
maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Length = 348
Score = 26.0 bits (57), Expect = 3.6
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 27 TMDRAIEKLSAHGLSRDDIVTL 48
T +EKL +R+ +
Sbjct: 2 TGREILEKLERREFTREVLKEA 23
>4f54_A Uncharacterized protein; PF13590 family protein, DUF4136,
structural genomics, joint for structural genomics,
JCSG; HET: MLY; 1.60A {Bacteroides thetaiotaomicron}
Length = 197
Score = 25.3 bits (54), Expect = 6.4
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 57 TVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 91
VVW + + T A V+Q + P
Sbjct: 158 PVVWTSYLTGFETGSXAINRTLAIEAVNQSFTQSP 192
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max}
SCOP: a.93.1.1
Length = 304
Score = 25.2 bits (56), Expect = 7.4
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 27 TMDRAIEKLSAHGLSRDDIVTL 48
+ + + GL+ D+VTL
Sbjct: 144 NLTQLKASFAVQGLNTLDLVTL 165
>2co3_A SAFA pilus subunit; adhesion, pathogenesis, fibril protein, fold
complementation; 1.78A {Salmonella typhimurium} SCOP:
b.2.3.2 PDB: 3cre_B 3crf_B 2co7_A 3cre_A 3crf_A 2cnz_A
2cny_A 2co1_A 2co2_A 2co4_A 2co6_A
Length = 137
Score = 24.7 bits (53), Expect = 7.5
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRE--TTVV 59
DI SPQ+ P+ L+A + I KL + + + GI+N T
Sbjct: 7 DIVFSSPQDLTVSLIPVSGLKAGKNAPSAKIAKLVVNSTTLKEFGVRGISNNVVDSTGTA 66
Query: 60 WDL---NTGEPL 68
W + NTG+ +
Sbjct: 67 WRVAGKNTGKEI 78
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 25.0 bits (55), Expect = 8.3
Identities = 3/13 (23%), Positives = 6/13 (46%)
Query: 56 TTVVWDLNTGEPL 68
+WDL + +
Sbjct: 189 FASIWDLKAKKEV 201
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 25.0 bits (54), Expect = 8.5
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 8/37 (21%)
Query: 52 NQRETTVVWDLNTGEPLYNAIVWSDT---RADNIVDQ 85
+V + G+ +V + +D +VD
Sbjct: 28 KVYPPKIVERFSEGD-----VVCALCGLVLSDKLVDT 59
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding,
glycosylation, oxidoreductase; HET: NAG HEM; 2.56A
{Arachis hypogaea} SCOP: a.93.1.1
Length = 294
Score = 24.8 bits (55), Expect = 8.6
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 27 TMDRAIEKLSAHGLSRDDIVTL 48
+ I S G + ++VTL
Sbjct: 144 NLSGLISAFSNKGFTTKELVTL 165
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 25.0 bits (55), Expect = 9.6
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 12/54 (22%)
Query: 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIE-------KLSAHGLSRDDIVTL 48
I T S E A Q L+ ++ ++ A + K G+ DD+ TL
Sbjct: 14 PIETASRDELTALQ-----LERLKWSLRHAYDHSPVYRRKFDEAGVHPDDLKTL 62
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM
MES NAG FUC MAN; 1.85A {Roystonea regia}
Length = 304
Score = 24.8 bits (55), Expect = 9.8
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 27 TMDRAIEKLSAHGLSRDDIVTL 48
+ I + L+ D++VTL
Sbjct: 144 NATQLINSFANKTLTADEMVTL 165
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.396
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,871,086
Number of extensions: 99928
Number of successful extensions: 597
Number of sequences better than 10.0: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 69
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.2 bits)