RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1574
(124 letters)
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli
[TaxId: 562]}
Length = 252
Score = 99.4 bits (247), Expect = 2e-27
Identities = 48/121 (39%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 61
+ I P+ GW E DPMEI +T+ + K +S D I +GITNQRETT+VW+
Sbjct: 33 EFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAK---ADISSDQIAAIGITNQRETTIVWE 89
Query: 62 LNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQN 121
TG+P+YNAIVW R I + + + DY++ GL + PYFS K+ W++ +
Sbjct: 90 KETGKPIYNAIVWQCRRTAEICEHLKRDGLE---DYIRSNTGLVIDPYFSGTKVKWILDH 146
Query: 122 V 122
V
Sbjct: 147 V 147
>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 252
Score = 94.1 bits (233), Expect = 2e-25
Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 61
+ P+ GW E + EI +VQ+ + A + G+ + I +GITNQRETTVVWD
Sbjct: 31 EFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRPEAIAGIGITNQRETTVVWD 87
Query: 62 LNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQN 121
TG+P+ NAIVW ++ I DQ+ + + GL + YFSA K+ WL+ N
Sbjct: 88 KTTGQPIANAIVWQSRQSSPIADQLKVDG---HTEMIHEKTGLVIDAYFSATKVRWLLDN 144
Query: 122 V 122
+
Sbjct: 145 I 145
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 28.8 bits (63), Expect = 0.18
Identities = 12/57 (21%), Positives = 17/57 (29%)
Query: 12 WAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL 68
W + A + +E L + +S DD VV D TG
Sbjct: 252 WVYDLKSKQRVARWDLAQQKVEPLVSIQVSEDDKPLFYGLTATSDLVVMDARTGALQ 308
>d2c5wb1 e.3.1.1 (B:266-650) Penicillin-binding protein 1a,
transpeptidase domain {Streptococcus pneumoniae [TaxId:
1313]}
Length = 385
Score = 27.0 bits (58), Expect = 0.58
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 24 VQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWS 75
V T +D+ +K + D+ V + + + D++ G+ +
Sbjct: 33 VYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQLGARH 84
>d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor)
{Bacillus anthracis [TaxId: 1392]}
Length = 509
Score = 26.8 bits (59), Expect = 0.80
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Query: 2 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 61
++ I Q E D + L +G+ R T G + + ++
Sbjct: 210 SLTEIKKQIPQKEWDKVVNTPNSLEKQKGVTNLLIKYGIERKPDSTKGTLSNWQKQMLDR 269
Query: 62 LNT--GEPLYNA--IVWSDTRADNIVDQVLAKFPDQDK 95
LN Y +V T DN +FP++D
Sbjct: 270 LNEAVKYTGYTGGDVVNHGTEQDN------EEFPEKDN 301
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Length = 70
Score = 24.7 bits (54), Expect = 1.4
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 89 KFPDQDKDYLKPICGLPVS 107
F D ++ P C P +
Sbjct: 33 PFVDLSDSFMCPACRSPKN 51
>d2oyoa1 a.152.1.3 (A:10-195) Uncharacterized protein Dgeo_1446
{Deinococcus geothermalis [TaxId: 68909]}
Length = 186
Score = 24.4 bits (52), Expect = 3.7
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 8 PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 48
+E ++ + +E L A GL I+ L
Sbjct: 116 EREQALAAYAEKLTRHPAEVTAADLEPLRAVGLDDHQIMEL 156
>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli
[TaxId: 562]}
Length = 193
Score = 23.8 bits (51), Expect = 6.1
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 73 VWSDTRADNIVDQVLAKFPDQDKDYLKPIC 102
+ + +V VL K P ++ +
Sbjct: 136 IGHPGDKNKVVGFVLGKPPVSEQKLIDEAI 165
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 71
Score = 22.7 bits (49), Expect = 7.0
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 28 MDRAIEKLSAHG---LSRDDIVTL 48
MD+ IE L L+ D+ L
Sbjct: 48 MDKCIEVLKEKKVDLLAASDLYKL 71
>d1y0ua_ a.4.5.5 (A:) Putative arsenical resistance operon
repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 89
Score = 23.1 bits (49), Expect = 7.3
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 10 EGWAEQDPME--------ILQAVQTTMDRAIEKLSAHGLSRDDIV-TLGITNQR 54
E W + D +E AV + R I ++ G S ++I+ TL ++ ++
Sbjct: 6 EEWIKADSLEKADEYHKRYNYAVTNPVRRKILRMLDKGRSEEEIMQTLSLSKKQ 59
>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
Crs2 {Maize (Zea mays) [TaxId: 4577]}
Length = 191
Score = 23.9 bits (51), Expect = 7.5
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 73 VWSDTRADNIVDQVLAKFPDQDKDYLKPI 101
+ S + +L KF +++ +
Sbjct: 136 IGSPPGKMDPRAFLLQKFSSEERVQIDTA 164
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId:
879]}
Length = 52
Score = 22.4 bits (48), Expect = 8.1
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 89 KFPDQDKDYLKPICGLPVS 107
KF D D+ P+CG
Sbjct: 29 KFEDLPDDWACPVCGASKD 47
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Length = 91
Score = 22.8 bits (49), Expect = 8.2
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 14 EQDPMEILQAVQTTMDRAIEK 34
E+ +LQ Q +D AIE
Sbjct: 62 EEQRQNLLQMCQNAIDMAIES 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.396
Gapped
Lambda K H
0.267 0.0560 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 455,739
Number of extensions: 18535
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 16
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)