BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15740
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D66|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D66|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D66|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D67|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
pdb|3D67|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
pdb|3D67|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
Length = 424
Score = 58.9 bits (141), Expect = 7e-10, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 7 FPKSRFRVLSPKSDNYFQLPLCLGNLYKVMRKKGLIERLTCFRQFKFLLFVLHSWASDDW 66
FP S R KS ++ +L L + + K R T + L L DDW
Sbjct: 319 FPYSYTR---SKSKDHEELSLVASEAVRAIEKTSKNTRYTHGHGSETLY--LAPGGGDDW 373
Query: 67 AKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIA 111
+ IKY++TIELRD G YGFLLP +I P RE+ AA+ IA
Sbjct: 374 IYDLG-IKYSFTIELRDTGTYGFLLPERYIKPTCREAFAAVSKIA 417
>pdb|3DGV|A Chain A, Crystal Structure Of Thrombin Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3DGV|B Chain B, Crystal Structure Of Thrombin Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3DGV|C Chain C, Crystal Structure Of Thrombin Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3OSL|A Chain A, Structure Of Bovine Thrombin-Activatable Fibrinolysis
Inhibitor In Complex With Tick Carboxypeptidase
Inhibitor
pdb|3OSL|C Chain C, Structure Of Bovine Thrombin-Activatable Fibrinolysis
Inhibitor In Complex With Tick Carboxypeptidase
Inhibitor
Length = 401
Score = 58.9 bits (141), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 62 ASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIA 111
SDDW + IKY++T ELRDKG YGFLLP S+I P E+L A+ IA
Sbjct: 346 GSDDWIYDLG-IKYSFTFELRDKGKYGFLLPESYIRPTCSEALVAVAKIA 394
>pdb|3LMS|A Chain A, Structure Of Human Activated Thrombin-Activatable
Fibrinolys Inhibitor, Tafia, In Complex With
Tick-Derived Funnelin Inh Tci
Length = 309
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 7 FPKSRFRVLSPKSDNYFQLPLCLGNLYKVMRKKGLIERLTCFRQFKFLLFVLHSWASDDW 66
FP S R KS ++ +L L + + K R T + L L DDW
Sbjct: 204 FPYSYTR---SKSKDHEELSLVASEAVRAIEKTSKNTRYTHGHGSETLY--LAPGGGDDW 258
Query: 67 AKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIA 111
+ IKY++TIELRD G YGFLLP +I P RE+ AA+ IA
Sbjct: 259 IYDLG-IKYSFTIELRDTGTYGFLLPERYIKPTCREAFAAVSKIA 302
>pdb|3D68|A Chain A, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
pdb|3D68|B Chain B, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
pdb|3D68|C Chain C, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
Length = 424
Score = 58.5 bits (140), Expect = 9e-10, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 7 FPKSRFRVLSPKSDNYFQLPLCLGNLYKVMRKKGLIERLTCFRQFKFLLFVLHSWASDDW 66
FP S R KS ++ +L L + + K R T + Q L+ L DDW
Sbjct: 319 FPYSYTR---SKSKDHEELSLVASEAVRAIEKISKNIRYT-YGQGSETLY-LAPGGGDDW 373
Query: 67 AKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIA 111
+ IKY++TIELRD G YGFLLP +I P RE+ AA+ IA
Sbjct: 374 IYDLG-IKYSFTIELRDTGTYGFLLPERYIKPTCREAFAAVSKIA 417
>pdb|3D4U|A Chain A, Bovine Thrombin-Activatable Fibrinolysis Inhibitor (Tafia)
In Complex With Tick-Derived Carboxypeptidase Inhibitor
Length = 309
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 62 ASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIA 111
SDDW + IKY++T ELRDKG YGFLLP S+I P E+L A+ IA
Sbjct: 254 GSDDWIYDLG-IKYSFTFELRDKGKYGFLLPESYIRPTCSEALVAVAKIA 302
>pdb|1CPB|B Chain B, Structure Of Carboxypeptidase B At 2.8 Angstroms
Resolution
Length = 217
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 60 SWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIA 111
S SDDWA IKY++T ELRDKG YGF+LP S I P E++ AIK +
Sbjct: 160 SGGSDDWAYDQG-IKYSFTFELRDKGRYGFVLPESQIQPTCEETMLAIKYVT 210
>pdb|3GLJ|A Chain A, A Polymorph Of Carboxypeptidase B Zymogen Structure
Length = 401
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 62 ASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
SDDWA IKY++T ELRDKG YGF+LP S I E++ AIK +
Sbjct: 346 GSDDWAYDQG-IKYSFTFELRDKGRYGFILPESQIQATCEETMLAIKYV 393
>pdb|1KWM|A Chain A, Human Procarboxypeptidase B: Three-Dimensional Structure
And Implications For Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|1KWM|B Chain B, Human Procarboxypeptidase B: Three-Dimensional Structure
And Implications For Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
Length = 402
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 62 ASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIA 111
SDDWA I+Y++T ELRD G YGFLLP S I E+ AIK +A
Sbjct: 346 GSDDWAYDQG-IRYSFTFELRDTGRYGFLLPESQIRATCEETFLAIKYVA 394
>pdb|1NSA|A Chain A, Three-Dimensional Structure Of Porcine Procarboxypeptidase
B: A Structural Basis Of Its Inactivity
Length = 395
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 62 ASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
SDDWA IKY++T ELRDKG +GF+LP S I +E++ A+K +
Sbjct: 340 GSDDWAYNQG-IKYSFTFELRDKGRFGFVLPESQIQATCQETMLAVKYV 387
>pdb|1Z5R|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
pdb|1Z5R|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
pdb|1Z5R|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
pdb|1ZG7|A Chain A, Crystal Structure Of 2-(5-{[amino(Imino)methyl]amino}-2-
Chlorophenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG7|B Chain B, Crystal Structure Of 2-(5-{[amino(Imino)methyl]amino}-2-
Chlorophenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG7|C Chain C, Crystal Structure Of 2-(5-{[amino(Imino)methyl]amino}-2-
Chlorophenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG8|A Chain A, Crystal Structure Of (R)-2-(3-{[amino(Imino)
Methyl]amino}phenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG8|B Chain B, Crystal Structure Of (R)-2-(3-{[amino(Imino)
Methyl]amino}phenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG8|C Chain C, Crystal Structure Of (R)-2-(3-{[amino(Imino)
Methyl]amino}phenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG9|A Chain A, Crystal Structure Of 5-{[amino(Imino)methyl]amino}-2-
(Sulfanylmethyl)pentanoic Acid Bound To Activated
Porcine Pancreatic Carboxypeptidase B
pdb|1ZG9|B Chain B, Crystal Structure Of 5-{[amino(Imino)methyl]amino}-2-
(Sulfanylmethyl)pentanoic Acid Bound To Activated
Porcine Pancreatic Carboxypeptidase B
pdb|1ZG9|C Chain C, Crystal Structure Of 5-{[amino(Imino)methyl]amino}-2-
(Sulfanylmethyl)pentanoic Acid Bound To Activated
Porcine Pancreatic Carboxypeptidase B
pdb|2JEW|A Chain A, Crystal Structure Of ( (2s)-5-Amino-2-((1-N-Propyl-1h-
Imidazol-4-Yl)methyl)pentanoic Acid) Uk396,082 A Tafia
Inhibitor, Bound To Activated Porcine Pancreatic
Carboxypeptidaseb
pdb|2PIY|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
(S)-2-(3-Aminomethyl-Phenyl)-3-{hydroxy-
[(R)-2-Methyl-1-(3-Phenyl-Propane-1-Sulfonylamino)-
Propyl]- Phosphinoyl}-Propionic Acid {zk 528} Complex
pdb|2PIY|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
(S)-2-(3-Aminomethyl-Phenyl)-3-{hydroxy-
[(R)-2-Methyl-1-(3-Phenyl-Propane-1-Sulfonylamino)-
Propyl]- Phosphinoyl}-Propionic Acid {zk 528} Complex
pdb|2PIY|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
(S)-2-(3-Aminomethyl-Phenyl)-3-{hydroxy-
[(R)-2-Methyl-1-(3-Phenyl-Propane-1-Sulfonylamino)-
Propyl]- Phosphinoyl}-Propionic Acid {zk 528} Complex
pdb|2PIZ|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Guanidino-Phenyl)-3-[hydroxy-(3-
Phenyl-Propyl)-Phosphinoyl]-Propionic Acid Complex
pdb|2PIZ|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Guanidino-Phenyl)-3-[hydroxy-(3-
Phenyl-Propyl)-Phosphinoyl]-Propionic Acid Complex
pdb|2PIZ|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Guanidino-Phenyl)-3-[hydroxy-(3-
Phenyl-Propyl)-Phosphinoyl]-Propionic Acid Complex
pdb|2PJ0|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-2-Methyl-
Propyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ0|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-2-Methyl-
Propyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ0|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-2-Methyl-
Propyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ1|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-aminomethyl-phenyl)-[((r)-1-
Benzyloxycarbonylamino-2-methyl-propyl)-hydroxy-
Phosphinoyloxy]-acetic Acid Complex
pdb|2PJ1|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-aminomethyl-phenyl)-[((r)-1-
Benzyloxycarbonylamino-2-methyl-propyl)-hydroxy-
Phosphinoyloxy]-acetic Acid Complex
pdb|2PJ1|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-aminomethyl-phenyl)-[((r)-1-
Benzyloxycarbonylamino-2-methyl-propyl)-hydroxy-
Phosphinoyloxy]-acetic Acid Complex
pdb|2PJ2|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzyloxycarbonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]-Propionic Acid Complex
pdb|2PJ2|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzyloxycarbonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]-Propionic Acid Complex
pdb|2PJ2|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzyloxycarbonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]-Propionic Acid Complex
pdb|2PJ3|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-Guanidino-Phenyl)-{hydroxy-[(R)-2-
Methyl-1-(3-Phenyl-Propionylamino)-Propyl]-
Phosphinoyloxy}- Acetic Acid Complex
pdb|2PJ3|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-Guanidino-Phenyl)-{hydroxy-[(R)-2-
Methyl-1-(3-Phenyl-Propionylamino)-Propyl]-
Phosphinoyloxy}- Acetic Acid Complex
pdb|2PJ3|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-Guanidino-Phenyl)-{hydroxy-[(R)-2-
Methyl-1-(3-Phenyl-Propionylamino)-Propyl]-
Phosphinoyloxy}- Acetic Acid Complex
pdb|2PJ4|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-Benzyloxycarbonylamino-Cyclohexyl-
Methyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ4|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-Benzyloxycarbonylamino-Cyclohexyl-
Methyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ5|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-Hexyl)-
Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJ5|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-Hexyl)-
Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJ5|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-Hexyl)-
Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJ6|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{hydroxy-
[(R)-2-Methyl-1-(2-Phenyl-Ethanesulfonylamino)-Propyl]-
Phosphinoyl}-Propionic Acid Complex
pdb|2PJ7|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzenesulfonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]- Propionic Acid Complex
pdb|2PJ7|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzenesulfonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]- Propionic Acid Complex
pdb|2PJ7|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzenesulfonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]- Propionic Acid Complex
pdb|2PJ8|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{[(R)-1-
(Biphenyl-4-Sulfonylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-Propionic Acid Complex
pdb|2PJ8|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{[(R)-1-
(Biphenyl-4-Sulfonylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-Propionic Acid Complex
pdb|2PJ8|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{[(R)-1-
(Biphenyl-4-Sulfonylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-Propionic Acid Complex
pdb|2PJ9|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{[(R)-1-
(Benzo[1,2,
5]thiadiazole-4-Sulfonylamino)-2-Methyl-Propyl]-
Hydroxy-Phosphinoyl}-Propionic Acid Complex
pdb|2PJA|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
3-{[(R)-1-((S)-2-Benzyloxycarbonylamino-
3-Phenyl-Propionylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-2-(3-Guanidino-Phenyl)-Propionic Acid
Complex
pdb|2PJA|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
3-{[(R)-1-((S)-2-Benzyloxycarbonylamino-
3-Phenyl-Propionylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-2-(3-Guanidino-Phenyl)-Propionic Acid
Complex
pdb|2PJA|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
3-{[(R)-1-((S)-2-Benzyloxycarbonylamino-
3-Phenyl-Propionylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-2-(3-Guanidino-Phenyl)-Propionic Acid
Complex
pdb|2PJB|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
2-(3-aminomethyl-phenyl)-3-{[1-((s)-2-
Benzyloxycarbonylamino-3-phenyl-propane-1-
sulfonylamino)-2-
Methyl-propyl]-hydroxy-phosphinoyl}-propionic Acid
Complex
pdb|2PJB|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
2-(3-aminomethyl-phenyl)-3-{[1-((s)-2-
Benzyloxycarbonylamino-3-phenyl-propane-1-
sulfonylamino)-2-
Methyl-propyl]-hydroxy-phosphinoyl}-propionic Acid
Complex
pdb|2PJB|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
2-(3-aminomethyl-phenyl)-3-{[1-((s)-2-
Benzyloxycarbonylamino-3-phenyl-propane-1-
sulfonylamino)-2-
Methyl-propyl]-hydroxy-phosphinoyl}-propionic Acid
Complex
pdb|2PJC|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
({(R)-1-[(S)-2-Benzyloxycarbonylamino-3-
(4-Hydroxy-Phenyl)-Propionylamino]-2-Methyl-Propyl}-
Hydroxy-Phosphinoyloxy)-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJC|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
({(R)-1-[(S)-2-Benzyloxycarbonylamino-3-
(4-Hydroxy-Phenyl)-Propionylamino]-2-Methyl-Propyl}-
Hydroxy-Phosphinoyloxy)-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJC|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
({(R)-1-[(S)-2-Benzyloxycarbonylamino-3-
(4-Hydroxy-Phenyl)-Propionylamino]-2-Methyl-Propyl}-
Hydroxy-Phosphinoyloxy)-(3-Guanidino-Phenyl)-Acetic Acid
Complex
Length = 306
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 62 ASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIAR 112
SDDWA IKY++T ELRDKG YGF+LP S I E++ AIK +
Sbjct: 251 GSDDWAYDQG-IKYSFTFELRDKGRYGFILPESQIQATCEETMLAIKYVTN 300
>pdb|1ZLI|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
In Complex With Human Carboxypeptidase B
Length = 309
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 62 ASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIA 111
SDDWA I+Y++T ELRD G YGFLLP S I E+ AIK +A
Sbjct: 253 GSDDWAYDQG-IRYSFTFELRDTGRYGFLLPESQIRATCEETFLAIKYVA 301
>pdb|1BAV|A Chain A, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|B Chain B, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|C Chain C, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|D Chain D, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
Length = 309
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 60 SWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
S S DW+ IKY++T ELRD G YGFLLPAS I+P +E+ + I
Sbjct: 251 SGGSIDWSYNQG-IKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTI 300
>pdb|1AYE|A Chain A, Human Procarboxypeptidase A2
Length = 401
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 60 SWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
S S DW+ IKY++ ELRD G YGFLLPA ILP E+ +KAI
Sbjct: 343 SGGSIDWSYDYG-IKYSFAFELRDTGRYGFLLPARQILPTAEETWLGLKAI 392
>pdb|1CBX|A Chain A, Crystal Structure Of The Complex Between Carboxypeptidase
A And The Biproduct Analog Inhibitor L-Benzylsuccinate
At 2.0 Angstroms Resolution
pdb|1CPS|A Chain A, Structural Comparison Of Sulfodiimine And Sulfonamide
Inhibitors In Their Complexes With Zinc Enzymes
Length = 307
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 60 SWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
S S DW+ IKY++T ELRD G YGFLLPAS I+P +E+ + I
Sbjct: 251 SGGSIDWSYNQG-IKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTI 300
>pdb|1HDU|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HEE|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1IY7|A Chain A, Crystal Structure Of Cpa And Sulfamide-based Inhibitor
Complex
pdb|5CPA|A Chain A, Refined Crystal Structure Of Carboxypeptidase A At 1.54
Angstroms Resolution.
pdb|6CPA|A Chain A, Crystal Structure Of The Complex Of Carboxypeptidase A
With A Strongly Bound Phosphonate In A New Crystalline
Form: Comparison With Structures Of Other Complexes
pdb|7CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase A-
Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|8CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase A-
Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|3CPA|A Chain A, X-Ray Crystallographic Investigation Of Substrate Binding
To Carboxypeptidase A At Subzero Temperature
pdb|4CPA|A Chain A, Refined Crystal Structure Of The Potato Inhibitor Complex
Of Carboxypeptidase A At 2.5 Angstroms Resolution
pdb|4CPA|B Chain B, Refined Crystal Structure Of The Potato Inhibitor Complex
Of Carboxypeptidase A At 2.5 Angstroms Resolution
Length = 307
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 60 SWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
S S DW+ IKY++T ELRD G YGFLLPAS I+P +E+ + I
Sbjct: 251 SGGSIDWSYNQG-IKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTI 300
>pdb|1PYT|B Chain B, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
pdb|3KGQ|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 60 SWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
S S DW+ IKY++T ELRD G YGFLLPAS I+P +E+ + I
Sbjct: 251 SGGSIDWSYNQG-IKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTI 300
>pdb|3FX6|A Chain A, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|C Chain C, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|E Chain E, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FVL|A Chain A, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|C Chain C, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|E Chain E, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
Length = 307
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 60 SWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
S S DW+ IKY++T ELRD G YGFLLPAS I+P +E+ + I
Sbjct: 251 SGGSIDWSYNQG-IKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTI 300
>pdb|1EE3|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 2 Mm Chloride In Monoclinic
Crystal Form
pdb|1ELL|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 0.25 M Chloride In Monoclinic
Crystal Form.
pdb|1ELM|P Chain P, Cadmium-Substituted Bovine Pacreatic Carboxypeptidase A
(Alfa-Form) At Ph 5.5 And 2 Mm Chloride In Monoclinic
Crystal Form.
pdb|1ZLH|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
In Complex With Bovine Carboxypeptidase A
pdb|2ABZ|A Chain A, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|2ABZ|B Chain B, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|1ARM|A Chain A, Carboxypeptidase A With Zn Replaced By Hg
pdb|1YME|A Chain A, Structure Of Carboxypeptidase
pdb|3I1U|A Chain A, Carboxypeptidase A Inhibited By A Thiirane Mechanism-Based
Inactivator
pdb|3HLP|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HLP|B Chain B, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HUV|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 60 SWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
S S DW+ IKY++T ELRD G YGFLLPAS I+P +E+ + I
Sbjct: 251 SGGSIDWSYNQG-IKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTI 300
>pdb|1HDQ|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With D-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|2CTB|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
pdb|2CTC|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
Length = 307
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 60 SWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
S S DW+ IKY++T ELRD G YGFLLPAS I+P +E+ + I
Sbjct: 251 SGGSIDWSYNQG-IKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTI 300
>pdb|1CPX|A Chain A, Beta Form Of Carboxypeptidase A (Residues 3-307) From
Bovine Pancreas In An Orthorhombic Crystal Form With Two
Zinc Ions In The Active Site.
pdb|1F57|A Chain A, Carboxypeptidase A Complex With D-Cysteine At 1.75 A
pdb|1M4L|A Chain A, Structure Of Native Carboxypeptidase A At 1.25 Resolution
pdb|1ARL|A Chain A, Carboxypeptidase A With Zn Removed
pdb|2RFH|A Chain A, Crystal Structure Analysis Of
Cpa-2-Benzyl-3-Nitropropanoic Acid Complex
Length = 307
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 60 SWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
S S DW+ IKY++T ELRD G YGFLLPAS I+P +E+ + I
Sbjct: 251 SGGSIDWSYNQG-IKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTI 300
>pdb|2BOA|A Chain A, Human Procarboxypeptidase A4.
pdb|2BOA|B Chain B, Human Procarboxypeptidase A4
Length = 404
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 60 SWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
S +S DWA IK+ +T ELRD G YGFLLPA+ I+P E+ +K I
Sbjct: 346 SGSSIDWAYDNG-IKFAFTFELRDTGTYGFLLPANQIIPTAEETWLGLKTI 395
>pdb|3FJU|A Chain A, Ascaris Suum Carboxypeptidase Inhibitor In Complex With
Human Carboxypeptidase A1
Length = 307
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 65 DWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
DW IKY++T ELRD G YGFLLPAS I+P +E+ A+ I
Sbjct: 255 DWTYSQG-IKYSFTFELRDTGRYGFLLPASQIIPTAKETWLALLTI 299
>pdb|2V77|A Chain A, Crystal Structure Of Human Carboxypeptidase A1
pdb|2V77|B Chain B, Crystal Structure Of Human Carboxypeptidase A1
Length = 309
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 65 DWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
DW IKY++T ELRD G YGFLLPAS I+P +E+ A+ I
Sbjct: 256 DWTYSQG-IKYSFTFELRDTGRYGFLLPASQIIPTAKETWLALLTI 300
>pdb|1DTD|A Chain A, Crystal Structure Of The Complex Between The Leech
Carboxypeptidase Inhibitor And The Human
Carboxypeptidase A2 (Lci-Cpa2)
Length = 303
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 60 SWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
S S DW+ IKY++ ELRD G YGFLLPA ILP E+ +KAI
Sbjct: 245 SGGSIDWSYDYG-IKYSFAFELRDTGRYGFLLPARQILPTAEETWLGLKAI 294
>pdb|4A94|A Chain A, Structure Of The Carboxypeptidase Inhibitor From Nerita
Versicolor In Complex With Human Cpa4
pdb|4A94|B Chain B, Structure Of The Carboxypeptidase Inhibitor From Nerita
Versicolor In Complex With Human Cpa4
Length = 310
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 60 SWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
S +S DWA IK+ +T ELRD G YGFLLPA+ I+P E+ +K I
Sbjct: 252 SGSSIDWAYDNG-IKFAFTFELRDTGTYGFLLPANQIIPTAEETWLGLKTI 301
>pdb|2BO9|A Chain A, Human Carboxypeptidase A4 In Complex With Human Latexin.
pdb|2BO9|C Chain C, Human Carboxypeptidase A4 In Complex With Human Latexin
Length = 308
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 60 SWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
S +S DWA IK+ +T ELRD G YGFLLPA+ I+P E+ +K I
Sbjct: 250 SGSSIDWAYDNG-IKFAFTFELRDTGTYGFLLPANQIIPTAEETWLGLKTI 299
>pdb|2PCU|A Chain A, Human Carboxypeptidase A4 In Complex With A Cleaved
Hexapeptide
Length = 305
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 60 SWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
S +S DWA IK+ +T ELRD G YGFLLPA+ I+P E+ +K I
Sbjct: 248 SGSSIDWAYDNG-IKFAFTFELRDTGTYGFLLPANQIIPTAEETWLGLKTI 297
>pdb|1PCA|A Chain A, Three Dimensional Structure Of Porcine Pancreatic
Procarboxypeptidase A. A Comparison Of The A And B
Zymogens And Their Determinants For Inhibition And
Activation
Length = 403
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 65 DWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAI 110
DW IKY+++ ELRD G GFLLPAS I+P +E+ A+ I
Sbjct: 351 DWTYNQG-IKYSFSFELRDTGRRGFLLPASQIIPTAQETWLALLTI 395
>pdb|2C1C|A Chain A, Structural Basis Of The Resistance Of An Insect
Carboxypeptidase To Plant Protease Inhibitors
pdb|2C1C|B Chain B, Structural Basis Of The Resistance Of An Insect
Carboxypeptidase To Plant Protease Inhibitors
Length = 312
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 62 ASDDWAKGVA-KIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIAR 112
+S+D+A + + YTY + G GF LP +I V RE+ I AR
Sbjct: 254 SSEDYAHSIGVPLSYTYELPGLSSGWDGFHLPPQYIEQVCRETWEGIVVGAR 305
>pdb|2VS8|A Chain A, The Crystal Structure Of I-Dmoi In Complex With Dna And Mn
pdb|2VS8|F Chain F, The Crystal Structure Of I-Dmoi In Complex With Dna And Mn
pdb|2VS8|K Chain K, The Crystal Structure Of I-Dmoi In Complex With Dna And Mn
Length = 200
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 42 IERLTCFRQFKFLLFVLHSWAS----------DDWAKGVAKIKYTYTIELRDKGNYGFLL 91
++RL + + K LL ++ W + DD GV Y I LRD+ + +
Sbjct: 123 LKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGV----YVLNISLRDRIKFVHTI 178
Query: 92 PASHILPVGRESLA 105
+SH+ P+ E+ A
Sbjct: 179 LSSHLNPLPPEAAA 192
>pdb|2VS7|A Chain A, The Crystal Structure Of I-Dmoi In Complex With Dna And Ca
pdb|2VS7|D Chain D, The Crystal Structure Of I-Dmoi In Complex With Dna And Ca
pdb|2VS7|G Chain G, The Crystal Structure Of I-Dmoi In Complex With Dna And Ca
Length = 199
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 42 IERLTCFRQFKFLLFVLHSWAS----------DDWAKGVAKIKYTYTIELRDKGNYGFLL 91
++RL + + K LL ++ W + DD GV Y I LRD+ + +
Sbjct: 122 LKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGV----YVLNISLRDRIKFVHTI 177
Query: 92 PASHILPVGRESLA 105
+SH+ P+ E+ A
Sbjct: 178 LSSHLNPLPPEAAA 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.142 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,487,425
Number of Sequences: 62578
Number of extensions: 132017
Number of successful extensions: 328
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 33
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)