Query psy15740
Match_columns 114
No_of_seqs 127 out of 670
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 20:11:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2650|consensus 100.0 3.2E-34 7E-39 237.5 9.4 101 13-114 314-418 (418)
2 cd03872 M14_CPA6 Carboxypeptid 100.0 3.4E-31 7.4E-36 211.6 8.7 101 12-114 192-296 (300)
3 cd06247 M14_CPO Peptidase M14 100.0 7.3E-31 1.6E-35 209.4 9.1 101 12-114 194-298 (298)
4 cd06246 M14_CPB2 Peptidase M14 100.0 2.6E-29 5.6E-34 200.4 9.4 100 13-114 196-299 (300)
5 cd06248 M14_CPA_CPB_like Pepti 100.0 2.4E-29 5.1E-34 200.6 9.0 102 13-114 199-304 (304)
6 cd03870 M14_CPA Peptidase M14 100.0 3.2E-29 7E-34 200.0 9.4 100 13-114 195-298 (301)
7 cd03871 M14_CPB Peptidase M14 100.0 1.7E-28 3.7E-33 195.9 8.8 101 12-114 195-299 (300)
8 cd06228 Peptidase_M14-like_3 A 99.9 8.6E-27 1.9E-31 188.7 7.6 96 13-108 194-332 (332)
9 cd03860 M14_CP_A-B_like The Pe 99.9 1.4E-23 3.1E-28 165.9 9.2 102 12-114 189-294 (294)
10 cd03867 M14_CPZ Peptidase M14- 99.8 1.2E-19 2.7E-24 149.3 8.0 99 11-114 197-316 (395)
11 cd03859 M14_CPT Peptidase M14- 99.8 3.3E-19 7.2E-24 141.4 5.9 91 12-107 201-295 (295)
12 cd03858 M14_CP_N-E_like Carbox 99.7 2.8E-17 6E-22 133.7 8.7 98 12-114 179-296 (374)
13 cd03868 M14_CPD_I The first ca 99.7 6.1E-17 1.3E-21 132.1 8.3 99 11-114 177-294 (372)
14 cd03866 M14_CPM Peptidase M14 99.6 5.8E-16 1.3E-20 127.1 8.6 98 12-114 176-293 (376)
15 smart00631 Zn_pept Zn_pept. 99.6 5.5E-16 1.2E-20 121.5 6.5 88 12-99 185-276 (277)
16 cd06227 Peptidase_M14-like_2 A 99.5 1.4E-14 3.1E-19 114.5 7.1 72 12-84 186-259 (272)
17 cd06905 Peptidase_M14-like_8 A 99.5 1.3E-14 2.7E-19 118.9 5.6 87 12-102 263-357 (360)
18 PF00246 Peptidase_M14: Zinc c 99.4 1.6E-13 3.5E-18 106.6 6.4 93 12-106 180-279 (279)
19 cd06226 M14_CPT_like Peptidase 99.4 1.6E-12 3.4E-17 103.9 6.6 88 12-108 202-290 (293)
20 cd03863 M14_CPD_II The second 99.3 9E-12 2E-16 102.5 8.6 99 11-114 177-295 (375)
21 cd06229 M14_Endopeptidase_I Pe 99.2 8.8E-12 1.9E-16 97.1 5.5 77 12-103 174-251 (255)
22 cd03862 Peptidase_M14-like_7 A 99.1 1.7E-10 3.7E-15 91.5 6.6 70 12-82 164-239 (273)
23 cd03856 M14_Nna1_like Peptidas 98.8 1.1E-08 2.5E-13 80.8 5.4 72 12-86 167-243 (269)
24 cd06237 M14_Nna1_like_3 A bact 98.7 2E-08 4.3E-13 78.4 4.6 77 13-102 160-238 (244)
25 cd00596 Peptidase_M14_like The 98.6 1.7E-07 3.7E-12 69.2 7.4 87 12-105 107-194 (196)
26 cd06245 M14_CPD_III The third 98.5 5.5E-07 1.2E-11 74.0 8.0 97 12-114 174-285 (363)
27 cd06234 M14_Nna1_like_1 A bact 97.7 3.7E-05 8E-10 60.9 4.3 69 17-86 164-240 (263)
28 cd03864 M14_CPN Peptidase M14 97.2 0.0021 4.5E-08 53.6 7.8 98 12-114 196-314 (392)
29 cd03869 M14_CPX_like Peptidase 97.1 0.0035 7.5E-08 52.6 8.3 98 12-114 208-327 (405)
30 PRK10602 murein peptide amidas 96.9 0.0031 6.7E-08 49.4 6.6 82 9-113 151-233 (237)
31 cd06238 Peptidase_M14-like_1_1 96.5 0.0046 9.9E-08 49.2 4.6 69 12-84 181-255 (271)
32 cd06908 M14_AGBL4_like Peptida 91.3 0.75 1.6E-05 36.5 6.3 91 11-107 155-249 (261)
33 cd03865 M14_CPE_H Peptidase M1 91.2 1.5 3.3E-05 36.9 8.3 98 12-114 204-324 (402)
34 cd06235 M14_Nna1_like_2 Subgro 86.7 2.3 5E-05 33.4 6.0 47 57-106 201-247 (258)
35 cd06904 M14_MpaA_like Peptidas 86.0 0.56 1.2E-05 34.6 2.1 28 57-85 137-164 (178)
36 KOG2649|consensus 56.6 19 0.00041 31.4 4.3 97 13-114 261-376 (500)
37 cd06906 M14_Nna1 Peptidase M14 35.9 37 0.0008 27.4 2.8 44 60-103 224-272 (278)
38 COG1889 NOP1 Fibrillarin-like 35.1 49 0.0011 26.1 3.2 45 40-84 63-111 (231)
39 TIGR02994 ectoine_eutE ectoine 34.6 75 0.0016 25.8 4.4 46 59-113 188-233 (325)
40 PF05017 TMP: TMP repeat; Int 26.9 26 0.00057 14.7 0.3 10 104-113 1-10 (11)
41 PF03380 DUF282: Caenorhabditi 25.8 42 0.0009 19.5 1.1 20 62-81 20-39 (39)
42 cd06907 M14_AGBL2-3_like Pepti 24.2 2.9E+02 0.0063 22.0 6.0 23 61-84 207-229 (261)
43 PF02762 Cbl_N3: CBL proto-onc 20.1 55 0.0012 22.0 1.0 33 73-105 24-60 (86)
No 1
>KOG2650|consensus
Probab=100.00 E-value=3.2e-34 Score=237.46 Aligned_cols=101 Identities=37% Similarity=0.481 Sum_probs=95.5
Q ss_pred EEEeccCCCCCCCCCCHHHHHHHHHHHh-Hhhhhc--cceeee-eeeeeeccCchhhhhcccCCccEEEEEEeecCCCCC
Q psy15740 13 RVLSPKSDNYFQLPLCLGNLYKVMRKKG-LIERLT--CFRQFK-FLLFVLHSWASDDWAKGVAKIKYTYTIELRDKGNYG 88 (114)
Q Consensus 13 ~iL~Pyg~~~~~~p~n~~~l~~va~~~a-ai~~~~--~Y~~g~-~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~g~~G 88 (114)
+|||||||+++.+ +|+++|++||++++ ||++++ .|++|+ ++++|+|+|+|+||||+++|||++|||||||+|.+|
T Consensus 314 ~llyPyg~~~~~~-~~~~dl~~va~~a~~ai~~~~gt~Y~~G~~~~~~y~asG~S~Dway~~~gi~~~ft~ELrd~g~~G 392 (418)
T KOG2650|consen 314 LLLYPYGYTNDLP-EDYEDLQEVARAAADALKSVYGTKYTVGSSADTLYPASGGSDDWAYDVLGIPYAFTFELRDTGRYG 392 (418)
T ss_pred eEEecccccCCCC-CCHHHHHHHHHHHHHHHHHHhCCEEEeccccceeeccCCchHHHhhhccCCCEEEEEEeccCCCCC
Confidence 7999999998764 89999999999988 998776 999995 799999999999999999999999999999999999
Q ss_pred cccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 89 FLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 89 F~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
|+||++||+|+|+|+|+||++|+++|
T Consensus 393 F~LP~~~I~pt~~Et~~~i~~i~~~v 418 (418)
T KOG2650|consen 393 FLLPASQIIPTAKETWAGIKAIAEKV 418 (418)
T ss_pred ccCChHHhhhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999986
No 2
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=99.97 E-value=3.4e-31 Score=211.56 Aligned_cols=101 Identities=30% Similarity=0.397 Sum_probs=92.2
Q ss_pred eEEEeccCCCCCCCCCCHHHHHHHHHHHh-Hhhhhc--cceeee-eeeeeeccCchhhhhcccCCccEEEEEEeecCCCC
Q psy15740 12 FRVLSPKSDNYFQLPLCLGNLYKVMRKKG-LIERLT--CFRQFK-FLLFVLHSWASDDWAKGVAKIKYTYTIELRDKGNY 87 (114)
Q Consensus 12 ~~iL~Pyg~~~~~~p~n~~~l~~va~~~a-ai~~~~--~Y~~g~-~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~g~~ 87 (114)
-+||+||||+++. ++|.++++++++.++ ||.+.+ .|++|+ ++++|.++|+|+||+| ..|||+|||+||||+|.+
T Consensus 192 ~~i~~P~g~~~~~-~~~~~~~~~~~~~~~~ai~~~~~~~Y~~g~~~~~lY~a~G~s~Dw~y-~~~i~~s~t~EL~~~g~~ 269 (300)
T cd03872 192 QMLLYPYSYKYAT-IPNFGCVESAAYNAVNALQSAYGVRYRYGPASSTLYVSSGSSMDWAY-KNGIPYAFAFELRDTGYY 269 (300)
T ss_pred cEEEecCCCcCCC-CCChHHHHHHHHHHHHHHHHhhCCCCcccCcccceecCCCCHHHHhh-cCCCcEEEEEEeCCCCCC
Confidence 4799999999876 559999999998877 887665 899995 6889999999999999 589999999999999999
Q ss_pred CcccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 88 GFLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 88 GF~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
||+||++||+|+++|+|+||++|+++|
T Consensus 270 gF~lp~~~I~p~~~E~~~~i~~~~~~~ 296 (300)
T cd03872 270 GFLLPEGLIKPTCTETMLAVKNITMHL 296 (300)
T ss_pred CCcCCHHHCCcccHHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 3
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=99.97 E-value=7.3e-31 Score=209.42 Aligned_cols=101 Identities=28% Similarity=0.420 Sum_probs=92.8
Q ss_pred eEEEeccCCCCCCCCCCHHHHHHHHHHHh-Hhhhhc--cceeee-eeeeeeccCchhhhhcccCCccEEEEEEeecCCCC
Q psy15740 12 FRVLSPKSDNYFQLPLCLGNLYKVMRKKG-LIERLT--CFRQFK-FLLFVLHSWASDDWAKGVAKIKYTYTIELRDKGNY 87 (114)
Q Consensus 12 ~~iL~Pyg~~~~~~p~n~~~l~~va~~~a-ai~~~~--~Y~~g~-~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~g~~ 87 (114)
-+||+||||+++. |+|.++++++|++++ ||.+.+ .|++|+ ++++|+++|+|+||+| ..|+++|||+||||+|.+
T Consensus 194 ~~i~~P~g~~~~~-~~n~~~~~~~a~~~~~ai~~~~~~~y~~g~~~~~~y~a~G~s~Dwa~-~~~~~~s~t~El~~~g~~ 271 (298)
T cd06247 194 QLILLPYGYTKEP-SSNHEEMMLVAQKAAAALKEKHGTEYRVGSSALILYSNSGSSRDWAV-DIGIPFSYTFELRDNGTY 271 (298)
T ss_pred CeEEeCCcCCCCC-CCCHHHHHHHHHHHHHHHHHhcCCCCccCCcccccccCCCChhhhhh-ccCCCEEEEEEeCCCCCC
Confidence 3689999999875 669999999999987 898775 899995 6889999999999999 589999999999999999
Q ss_pred CcccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 88 GFLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 88 GF~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
||+||++||+|+++|+|+||++|++++
T Consensus 272 gF~lp~~~I~p~~~E~~~~i~~~~~~~ 298 (298)
T cd06247 272 GFVLPEDQIQPTCEETMTAVMSMVEYV 298 (298)
T ss_pred CCCCChHHCcchhHHHHHHHHHHHhhC
Confidence 999999999999999999999999875
No 4
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=99.96 E-value=2.6e-29 Score=200.40 Aligned_cols=100 Identities=37% Similarity=0.465 Sum_probs=92.1
Q ss_pred EEEeccCCCCCCCCCCHHHHHHHHHHHh-Hhhhhc--cceeee-eeeeeeccCchhhhhcccCCccEEEEEEeecCCCCC
Q psy15740 13 RVLSPKSDNYFQLPLCLGNLYKVMRKKG-LIERLT--CFRQFK-FLLFVLHSWASDDWAKGVAKIKYTYTIELRDKGNYG 88 (114)
Q Consensus 13 ~iL~Pyg~~~~~~p~n~~~l~~va~~~a-ai~~~~--~Y~~g~-~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~g~~G 88 (114)
+||+||||+++. ++|.+++.++|++++ ||.+.+ .|++|+ +..+|+++|+|+||+| ..|++++||+||||.|.+|
T Consensus 196 ~i~~P~~~~~~~-~~~~~~~~~la~~~~~ai~~~~~~~y~~g~~~~~~Y~a~G~s~Dw~y-~~~~~~s~t~El~~~g~~g 273 (300)
T cd06246 196 MILFPYSYTRSK-SKDHEELSLLAKEAVRAIRRTSNNRYTHGSGAETIYLAPGGSDDWAY-DLGIKYSFTFELRDTGTYG 273 (300)
T ss_pred EEEeccccCCCC-CCCHHHHHHHHHHHHHHHHHhhCCCCeecCCCCeeeccCCChhhHhh-cCCCCEEEEEEecCCCCCC
Confidence 799999998765 569999999999987 887766 899995 6889999999999999 5899999999999999999
Q ss_pred cccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 89 FLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 89 F~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
|+||++||+|+++|+|+||++|++++
T Consensus 274 F~lp~~~I~p~~~E~~~~~~~~~~~~ 299 (300)
T cd06246 274 FLLPESYIKPTCSEALAAVKKIAWHV 299 (300)
T ss_pred CCCCHHHcccccHHHHHHHHHHHHhh
Confidence 99999999999999999999999875
No 5
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=99.96 E-value=2.4e-29 Score=200.55 Aligned_cols=102 Identities=30% Similarity=0.466 Sum_probs=95.5
Q ss_pred EEEeccCCCCCCCCCCHHHHHHHHHHHh-Hhhhhc--cceeee-eeeeeeccCchhhhhcccCCccEEEEEEeecCCCCC
Q psy15740 13 RVLSPKSDNYFQLPLCLGNLYKVMRKKG-LIERLT--CFRQFK-FLLFVLHSWASDDWAKGVAKIKYTYTIELRDKGNYG 88 (114)
Q Consensus 13 ~iL~Pyg~~~~~~p~n~~~l~~va~~~a-ai~~~~--~Y~~g~-~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~g~~G 88 (114)
+|++||+|+++..|+|.+++++|++.++ +|.+.+ .|++|+ +..+|+++|+++||+|+..|++++||+||+|.|.+|
T Consensus 199 ~i~~P~~~~~~~~~~d~~~~~~la~~~a~ai~~~~g~~y~~g~~~~~~y~~~G~~~D~~y~~~gi~~~~t~El~~~~~~g 278 (304)
T cd06248 199 LILYPYGYSCDAVPPNLENLEELAAGLAKAIRAVSGTTYTVGPACNTLYQTTGSSVDWVYHVAGAAWSYQLELRDTGTYG 278 (304)
T ss_pred eEEecCcCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcccccccccccCCCCcchhhhccCCCcEEEEEEeCCCCCCC
Confidence 7899999998877899999999999887 887766 799996 578999999999999999999999999999999999
Q ss_pred cccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 89 FLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 89 F~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
|+||++||+|+++|+|+||++|+++|
T Consensus 279 f~~p~~~i~p~~~e~~~~~~~~~~~~ 304 (304)
T cd06248 279 FVLPAKQIIPTGEETWAGIKYLLKFI 304 (304)
T ss_pred CCCCHHHCcchhHHHHHHHHHHHhhC
Confidence 99999999999999999999999986
No 6
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=99.96 E-value=3.2e-29 Score=200.00 Aligned_cols=100 Identities=30% Similarity=0.426 Sum_probs=92.0
Q ss_pred EEEeccCCCCCCCCCCHHHHHHHHHHHh-Hhhhhc--cceeee-eeeeeeccCchhhhhcccCCccEEEEEEeecCCCCC
Q psy15740 13 RVLSPKSDNYFQLPLCLGNLYKVMRKKG-LIERLT--CFRQFK-FLLFVLHSWASDDWAKGVAKIKYTYTIELRDKGNYG 88 (114)
Q Consensus 13 ~iL~Pyg~~~~~~p~n~~~l~~va~~~a-ai~~~~--~Y~~g~-~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~g~~G 88 (114)
+|||||||+++. ++|.++++++|+.++ ||.+.+ .|++|+ ++++|+++|+|+||+|. .|++++||+||||+|.+|
T Consensus 195 ~i~yP~~~~~~~-~~~~~~~~~la~~~~~ai~~~~g~~y~~g~~~~~~y~a~G~s~Dw~y~-~~~~~s~t~El~~~g~~g 272 (301)
T cd03870 195 LLLYPYGYTTQS-IPDKTELNQVAKSAVAALKSLYGTSYKYGSIITTIYQASGGSIDWSYN-QGIKYSFTFELRDTGRYG 272 (301)
T ss_pred eEEecCcCCCCC-CCCHHHHHHHHHHHHHHHHHhcCCccccccccceeecCCCChhhhhhc-CCCcEEEEEEeCCCCCCC
Confidence 789999999876 559999999999987 898776 799995 57899999999999995 899999999999999999
Q ss_pred cccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 89 FLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 89 F~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
|+||+++|+|+|+|+|+||++|++++
T Consensus 273 F~lP~~~i~p~~~E~~~~i~~~~~~~ 298 (301)
T cd03870 273 FLLPASQIIPTAQETWLGLLTIMEHT 298 (301)
T ss_pred CCCChHHCchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 7
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=99.95 E-value=1.7e-28 Score=195.86 Aligned_cols=101 Identities=37% Similarity=0.471 Sum_probs=92.0
Q ss_pred eEEEeccCCCCCCCCCCHHHHHHHHHHHh-Hhhhhc--cceeee-eeeeeeccCchhhhhcccCCccEEEEEEeecCCCC
Q psy15740 12 FRVLSPKSDNYFQLPLCLGNLYKVMRKKG-LIERLT--CFRQFK-FLLFVLHSWASDDWAKGVAKIKYTYTIELRDKGNY 87 (114)
Q Consensus 12 ~~iL~Pyg~~~~~~p~n~~~l~~va~~~a-ai~~~~--~Y~~g~-~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~g~~ 87 (114)
-+||+||||+++. |+|.+++++||+.++ +|.+.+ .|++|+ +.++|+++|+|+||+|. .|++++||+||||+|.+
T Consensus 195 ~~i~~Py~~~~~~-~~~~~~~~~la~~~~~ai~~~~g~~y~~g~~~~~~Y~a~G~s~Dw~y~-~~~~~s~t~El~~~g~~ 272 (300)
T cd03871 195 QMLLYPYSYTYKL-PENHAELNSVAKGAVKELASLYGTKYTYGPGATTIYPAAGGSDDWAYD-QGIKYSFTFELRDKGRY 272 (300)
T ss_pred cEEEecCcCCCCC-CCCHHHHHHHHHHHHHHHHHhhCCCCcCCccccccccCCCCHHHHHhc-CCCcEEEEEEeCCCCCC
Confidence 3789999998764 789999999999877 887765 788985 67899999999999995 89999999999999999
Q ss_pred CcccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 88 GFLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 88 GF~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
||.||++||+|+++|+|.||++|+++|
T Consensus 273 gf~lp~~~I~~~~~E~~~~i~~~~~~~ 299 (300)
T cd03871 273 GFLLPESQIKPTCEETMLAVKYIANYV 299 (300)
T ss_pred CCCCCHHHCccccHHHHHHHHHHHHhh
Confidence 999999999999999999999999875
No 8
>cd06228 Peptidase_M14-like_3 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.93 E-value=8.6e-27 Score=188.69 Aligned_cols=96 Identities=20% Similarity=0.149 Sum_probs=86.2
Q ss_pred EEEeccCCCCCC-------------------------------CCCCHHHHHHHHHHHh-Hhhhhc--cceeeeeeeeee
Q psy15740 13 RVLSPKSDNYFQ-------------------------------LPLCLGNLYKVMRKKG-LIERLT--CFRQFKFLLFVL 58 (114)
Q Consensus 13 ~iL~Pyg~~~~~-------------------------------~p~n~~~l~~va~~~a-ai~~~~--~Y~~g~~~~lY~ 58 (114)
+||+||||+++. .|+|+++|+++|++++ ||.+++ .|++|++..||+
T Consensus 194 ~il~P~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~ai~~~~g~~Y~~g~~~~lY~ 273 (332)
T cd06228 194 DVLYSWGDDENQSTNPAMNFMNPAYDGKRGIVAAPDTRYGEYIDSDDWDAAVNLAARMGLAMAAARGRIYTVSQSVGLYP 273 (332)
T ss_pred eEEecccCCccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHhCCCceeCCcccccC
Confidence 689999999643 2789999999999988 998877 899998777999
Q ss_pred ccCchhhhhcccC------CccEEEEEEeecCC---CCCcccCcCCcchhHHHHHHHHH
Q psy15740 59 HSWASDDWAKGVA------KIKYTYTIELRDKG---NYGFLLPASHILPVGRESLAAIK 108 (114)
Q Consensus 59 asG~S~Dw~~~~~------gi~~syt~ELrd~g---~~GF~lP~~~I~p~~~E~~~gi~ 108 (114)
+||+|+||+|+++ |+++||||||||++ .+||+||++||+|+++|+|+|+.
T Consensus 274 ~sG~s~D~ay~~~~~~~~~~~~~s~t~El~~~~~~~~~gF~~p~~~i~~~~~E~~~g~~ 332 (332)
T cd06228 274 TSGASDDYAFSRHFADAVKRKVFSYTIEFGETNSEAECPFYPTYSEYNQIIKEVAAGLM 332 (332)
T ss_pred CCCChhhhhhhccccccccCceEEEEEEeCCCCCCCCcCCCCCHHHHHHHHHHHHHhhC
Confidence 9999999999854 89999999999985 78999999999999999999973
No 9
>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the
Probab=99.90 E-value=1.4e-23 Score=165.91 Aligned_cols=102 Identities=41% Similarity=0.586 Sum_probs=91.6
Q ss_pred eEEEeccCCCCCCCCCCHHHHHHHHHHHh-Hhhhhc--cceeee-eeeeeeccCchhhhhcccCCccEEEEEEeecCCCC
Q psy15740 12 FRVLSPKSDNYFQLPLCLGNLYKVMRKKG-LIERLT--CFRQFK-FLLFVLHSWASDDWAKGVAKIKYTYTIELRDKGNY 87 (114)
Q Consensus 12 ~~iL~Pyg~~~~~~p~n~~~l~~va~~~a-ai~~~~--~Y~~g~-~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~g~~ 87 (114)
-.|++||+++. ..|+|.++++++|+.++ ++.+.+ .|++|+ ++.+|+++|++.||+|+..|++++||+||+|.+.+
T Consensus 189 ~~i~~P~~~~~-~~~~d~~~~~~la~~~~~~~~~~~g~~Y~~g~~~~~~y~~~G~~~Dw~y~~~~~~~~~t~El~~~~~~ 267 (294)
T cd03860 189 QLILYPWGYTS-ELPPNYEDLREVAKAAADAIRAVYGTRYTVGSSAETLYPASGGSDDWAYGVAGIPYSYTLELRDTGRY 267 (294)
T ss_pred ceEEcCCCCCC-CCCCCHHHHHHHHHHHHHHHHHhcCCCCccccccCccccCCCchhhhhhccCCCcEEEEEEecCCCCC
Confidence 47899999984 55789999999999877 886553 799986 56889999999999999899999999999999889
Q ss_pred CcccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 88 GFLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 88 GF~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
||.+|+++|.|+++|+|.||++|++++
T Consensus 268 gf~~p~~~i~~~~~e~~~~~~~~~~~~ 294 (294)
T cd03860 268 GFLLPASQIIPTAEETFAGIKAMADEA 294 (294)
T ss_pred CCcCChHHchhHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999864
No 10
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=99.80 E-value=1.2e-19 Score=149.29 Aligned_cols=99 Identities=11% Similarity=0.033 Sum_probs=83.3
Q ss_pred ceEEEeccCCCCCC-------CCCCHHHHHHHHHHHh-Hhhhhc----------cceeee-e--eeeeeccCchhhhhcc
Q psy15740 11 RFRVLSPKSDNYFQ-------LPLCLGNLYKVMRKKG-LIERLT----------CFRQFK-F--LLFVLHSWASDDWAKG 69 (114)
Q Consensus 11 ~~~iL~Pyg~~~~~-------~p~n~~~l~~va~~~a-ai~~~~----------~Y~~g~-~--~~lY~asG~S~Dw~~~ 69 (114)
-.+|+|||+|+++. .++|.++++.||+.++ |+...+ .|++|+ + ..+|+++|+|.||+|
T Consensus 197 ~~~~~yP~~~t~~~~~~~~~~~~~d~~~~~~lA~~~a~a~~~~~~~~~~~~~~~~~~~g~i~~ga~~Y~~sG~~~Dw~y- 275 (395)
T cd03867 197 DLVVSYPYDFSRHPLEEKMFSPTPDEKVFKMLARTYADAHPTMSDRSTRRCGGNFHKRGGIINGAEWYSFSGGMSDFNY- 275 (395)
T ss_pred ceeEEcccccccCcccccccCCCCcHHHHHHHHHHHHHhCccccCCCCCCCccccccCCCceecceeeEcCCCcchhhh-
Confidence 35799999998652 4689999999999977 875421 356664 3 468999999999999
Q ss_pred cCCccEEEEEEeecCCCCCcccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 70 VAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 70 ~~gi~~syt~ELrd~g~~GF~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
..+++++||+||++. |.||++||.|+++|+|+++++|+++|
T Consensus 276 ~~~~~~~~T~EL~~~----~~pp~~~i~~~~~e~~~~l~~~~~~~ 316 (395)
T cd03867 276 LHTNCFEVTVELGCD----KFPPEEELYTIWQENKEALLSFMEMV 316 (395)
T ss_pred hccCceEEEEEecCC----CCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999984 55999999999999999999999875
No 11
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=99.77 E-value=3.3e-19 Score=141.35 Aligned_cols=91 Identities=18% Similarity=0.114 Sum_probs=78.8
Q ss_pred eEEEeccCCCCCC--CCCCHHHHHHHHHHHh-HhhhhccceeeeeeeeeeccCchhhhhcccCCccEEEEEEeecCC-CC
Q psy15740 12 FRVLSPKSDNYFQ--LPLCLGNLYKVMRKKG-LIERLTCFRQFKFLLFVLHSWASDDWAKGVAKIKYTYTIELRDKG-NY 87 (114)
Q Consensus 12 ~~iL~Pyg~~~~~--~p~n~~~l~~va~~~a-ai~~~~~Y~~g~~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~g-~~ 87 (114)
-+|++||+++++. .++|...+++||+.++ +. .|++|++..+|+++|++.||+|+..|+ ++||+||+|.+ .+
T Consensus 201 ~~i~~P~~~~~~~~~~~~d~~~~~~la~~~~~~~----~y~~~~~~~~Y~~~G~~~Dw~y~~~~~-~~~t~El~~~~~~~ 275 (295)
T cd03859 201 NLWLYPYGYQYNEPMPSKDEIDFVALGGTMAESN----GYTPKVSSDLYTANGDADDWMYGRHKI-ISLTPEMGPESGGT 275 (295)
T ss_pred ceEEeCCcCCCCCCCCCccHHHHHHHHHHHHHHh----CCcccCcceeEecCCchHHHHhhCCCc-EEEEEEeCCCCCCC
Confidence 4789999998766 3678999999998876 43 588887667899999999999998899 89999999964 78
Q ss_pred CcccCcCCcchhHHHHHHHH
Q psy15740 88 GFLLPASHILPVGRESLAAI 107 (114)
Q Consensus 88 GF~lP~~~I~p~~~E~~~gi 107 (114)
||+||+++|.|+++|.+.+|
T Consensus 276 gf~~p~~~i~~~~~~~~~~~ 295 (295)
T cd03859 276 GFYPPDEEISRETSRNYPAL 295 (295)
T ss_pred CCcCCHHHHHHHHHhccCCC
Confidence 99999999999999998654
No 12
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=99.71 E-value=2.8e-17 Score=133.67 Aligned_cols=98 Identities=14% Similarity=-0.004 Sum_probs=82.6
Q ss_pred eEEEeccCCCCC------CCCCCHHHHHHHHHHHh-Hhhhhc-----------cceeee--eeeeeeccCchhhhhcccC
Q psy15740 12 FRVLSPKSDNYF------QLPLCLGNLYKVMRKKG-LIERLT-----------CFRQFK--FLLFVLHSWASDDWAKGVA 71 (114)
Q Consensus 12 ~~iL~Pyg~~~~------~~p~n~~~l~~va~~~a-ai~~~~-----------~Y~~g~--~~~lY~asG~S~Dw~~~~~ 71 (114)
-+|+|||+++++ ..++|...+.++|+.++ ++.+.+ .|++|. +..+|+++|+|.||+|+ .
T Consensus 179 ~~~~yp~~~~~~~~~~~~~~~~d~~~~~~la~~~a~~~~~~~~~~~~~~~~~~~y~~G~~~~~~~Y~~~G~~~Dw~y~-~ 257 (374)
T cd03858 179 LVANYPYDDSPSGKRTAYSATPDDELFRYLAKTYADAHPTMHKGGPCCCNDDEEFPGGITNGAAWYSVTGGMQDWNYL-H 257 (374)
T ss_pred eEEEcccccCCCccccCCCCCCCHHHHHHHHHHHHHhCHHhcCCCCCCCcccccCCCCcEEcceeeEcCCCchhhhhh-c
Confidence 489999999843 24679999999999876 665432 477784 46789999999999995 7
Q ss_pred CccEEEEEEeecCCCCCcccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 72 KIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 72 gi~~syt~ELrd~g~~GF~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
+++++||+||++. +.+|+++|.++.+|+|++++++++++
T Consensus 258 ~~~~~~t~El~~~----~~p~~~~i~~i~~en~~all~l~~~a 296 (374)
T cd03858 258 TNCFEITLELSCC----KFPPASELPKYWEENREALLAYIEQV 296 (374)
T ss_pred cCceEEEEeccCC----CCCChhHhHHHHHHHHHHHHHHHhhc
Confidence 9999999999985 57899999999999999999998864
No 13
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=99.69 E-value=6.1e-17 Score=132.07 Aligned_cols=99 Identities=11% Similarity=-0.056 Sum_probs=84.5
Q ss_pred ceEEEeccCCCCCC-------CCCCHHHHHHHHHHHh-Hhhh---------hccceeee-e-eeeeeccCchhhhhcccC
Q psy15740 11 RFRVLSPKSDNYFQ-------LPLCLGNLYKVMRKKG-LIER---------LTCFRQFK-F-LLFVLHSWASDDWAKGVA 71 (114)
Q Consensus 11 ~~~iL~Pyg~~~~~-------~p~n~~~l~~va~~~a-ai~~---------~~~Y~~g~-~-~~lY~asG~S~Dw~~~~~ 71 (114)
-.+++|||+++.+. .++|.+.++++|+.++ |+.. .+.|+.|. + ..+|+++|+|.||+| ..
T Consensus 177 ~~~~~yP~~~~~~~~~~~~~~~~pd~~~~~~la~~~a~~~~~~~~~~~~~~~~~~~~G~~~~~~~Y~~~G~~~Dw~y-~~ 255 (372)
T cd03868 177 SVVASYPYDDSSSHNECGVYSKSPDDAVFKYLALTYANNHPTMRTGKPCCEGETFKDGITNGAHWYDVPGGMQDYNY-LH 255 (372)
T ss_pred cEEEeccccccCCCCCCcccCCCCCHHHHHHHHHHHHhhCHHhhCCCCCCccccCCCCcccCceeeeCCCCcchhhh-hc
Confidence 45799999998654 4679999999999977 7643 22788884 3 578999999999999 48
Q ss_pred CccEEEEEEeecCCCCCcccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 72 KIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 72 gi~~syt~ELrd~g~~GF~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
+++++||+||++ +|.+|+++|.+..+|.+++++.++++|
T Consensus 256 ~~~~~~T~El~~----~~~p~~~~l~~~w~~n~~al~~~~~~~ 294 (372)
T cd03868 256 SNCFEITLELSC----CKYPPASELPEEWNNNRESLLAYLEQV 294 (372)
T ss_pred cCeeEEEEEecC----CCCCCHHHHHHHHHHhHHHHHHHHHHh
Confidence 999999999997 699999999999999999999998874
No 14
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=99.64 E-value=5.8e-16 Score=127.06 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=82.4
Q ss_pred eEEEeccCCCC--------CCCCCCHHHHHHHHHHHh-Hhhhh---------ccceee--eeeeeeeccCchhhhhcccC
Q psy15740 12 FRVLSPKSDNY--------FQLPLCLGNLYKVMRKKG-LIERL---------TCFRQF--KFLLFVLHSWASDDWAKGVA 71 (114)
Q Consensus 12 ~~iL~Pyg~~~--------~~~p~n~~~l~~va~~~a-ai~~~---------~~Y~~g--~~~~lY~asG~S~Dw~~~~~ 71 (114)
.+++|||+++. ..+++|.+.++.+|+..+ ++.+. ..|+.| +...+|+++|+|.||+| ..
T Consensus 176 ~~~~YP~~~~~~~~~~~~~~~~~pd~~~~~~la~~~a~~~~~~~~g~~~~~~~~~~~Gi~nga~~Y~~sG~~~Dw~y-~~ 254 (376)
T cd03866 176 LVASYPYDNGNGGTGQQGYRSVSPDDDVFVHLAKTYSYNHANMYKGNHCSDKQSFPSGITNGYQWYPLQGGMQDYNY-VW 254 (376)
T ss_pred eEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCHHhhCCCCCCccccCCCCcccceEEEEcCCCchhhhh-hh
Confidence 46899999972 234679999999998865 55432 267788 44578999999999999 79
Q ss_pred CccEEEEEEeecCCCCCcccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 72 KIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 72 gi~~syt~ELrd~g~~GF~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
+++++||+||++ +|.+|++||.+..+|..++++++++++
T Consensus 255 ~~~~~~T~El~~----~k~p~~~~l~~~w~~n~~~ll~~i~q~ 293 (376)
T cd03866 255 AQCFEITLELSC----CKYPPEEQLPAFWEDNKAALIEYIKQV 293 (376)
T ss_pred CceEEEEEEecC----CCCCCHHHHHHHHHHhHHHHHHHHHHh
Confidence 999999999998 589999999999999999999998864
No 15
>smart00631 Zn_pept Zn_pept.
Probab=99.63 E-value=5.5e-16 Score=121.51 Aligned_cols=88 Identities=33% Similarity=0.490 Sum_probs=77.7
Q ss_pred eEEEeccCCCCCCCCCCHHHHHHHHHHHh-Hhhhhc--cceeee-eeeeeeccCchhhhhcccCCccEEEEEEeecCCCC
Q psy15740 12 FRVLSPKSDNYFQLPLCLGNLYKVMRKKG-LIERLT--CFRQFK-FLLFVLHSWASDDWAKGVAKIKYTYTIELRDKGNY 87 (114)
Q Consensus 12 ~~iL~Pyg~~~~~~p~n~~~l~~va~~~a-ai~~~~--~Y~~g~-~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~g~~ 87 (114)
-.|++||++++...|++..+++++++..+ ++.+.+ .|++|+ ++.+|.++|++.||+|...|++++||+||.+.+.+
T Consensus 185 ~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~g~~~~~~y~~~G~~~D~~~~~~gi~~~~t~El~~~~~~ 264 (277)
T smart00631 185 QLILYPYGYTKNDLPPNVDDLDAVAKALAKALASVHGTRYTYGISNGAIYPASGGSDDWAYGTLGIPFSFTLELRDDGRY 264 (277)
T ss_pred cEEEecCcCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCccccccccCcccCCCCchhhhhhccCCCcEEEEEEecCCCCC
Confidence 46799999988767888888899998877 887776 499885 56679999999999999899999999999999888
Q ss_pred CcccCcCCcchh
Q psy15740 88 GFLLPASHILPV 99 (114)
Q Consensus 88 GF~lP~~~I~p~ 99 (114)
||.+|+++|.|+
T Consensus 265 ~~~~p~~~~~~~ 276 (277)
T smart00631 265 GFLLPPSQIIPT 276 (277)
T ss_pred CccCCHHHccCC
Confidence 999999999986
No 16
>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.54 E-value=1.4e-14 Score=114.55 Aligned_cols=72 Identities=17% Similarity=0.121 Sum_probs=60.2
Q ss_pred eEEEeccCCCCCCCCCCHHHHHHHHHHHhHhhhhccceeee-eeee-eeccCchhhhhcccCCccEEEEEEeecC
Q psy15740 12 FRVLSPKSDNYFQLPLCLGNLYKVMRKKGLIERLTCFRQFK-FLLF-VLHSWASDDWAKGVAKIKYTYTIELRDK 84 (114)
Q Consensus 12 ~~iL~Pyg~~~~~~p~n~~~l~~va~~~aai~~~~~Y~~g~-~~~l-Y~asG~S~Dw~~~~~gi~~syt~ELrd~ 84 (114)
-+|++||+|+++..++|..++.++++.++. ...+.|++|+ ++++ |+++|+|.||+|++.|||+|||+|||+.
T Consensus 186 ~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~G~~~~~~~Y~a~G~s~Dway~~~gip~s~t~EL~~~ 259 (272)
T cd06227 186 LALFTPYAYKKEQPEPNLAEDMRILLLISN-KHCPRCQVGSAGKLVGYLAHGTSMDYMYDVLKVPYSFTFEIYGD 259 (272)
T ss_pred CEEEecCCCCCCCCCCCHHHHHHHHHHHHH-HhCCCCceecCccceeecCCCCHHHHHhhcCCCcEEEEEEccCC
Confidence 468999999987754799999999987654 2333799996 4555 9999999999999999999999999965
No 17
>cd06905 Peptidase_M14-like_8 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.52 E-value=1.3e-14 Score=118.87 Aligned_cols=87 Identities=22% Similarity=0.090 Sum_probs=68.2
Q ss_pred eEEEeccCCCCCCC--CCCHHHHHHHHHHHhHhhhh------ccceeeeeeeeeeccCchhhhhcccCCccEEEEEEeec
Q psy15740 12 FRVLSPKSDNYFQL--PLCLGNLYKVMRKKGLIERL------TCFRQFKFLLFVLHSWASDDWAKGVAKIKYTYTIELRD 83 (114)
Q Consensus 12 ~~iL~Pyg~~~~~~--p~n~~~l~~va~~~aai~~~------~~Y~~g~~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd 83 (114)
-+||+||||+++.. |+|...++++|+.++++..+ +.|++|++ ++++|+++||+|+..|+ +|||+||+|
T Consensus 263 ~~il~P~g~~~~~~~~~~~~~~~~~la~~~~~~~~y~~~~~~~~~~~~~~---~~~~G~~~Dw~y~~~gi-~s~t~EL~~ 338 (360)
T cd06905 263 GVILRPYSDKPDDQMPVDDLELYKALGEKGEELTGYPTVSVYHEFRYHPK---EVTYGAFDDWAYDHLGI-FAFTVELWD 338 (360)
T ss_pred CeeeeCCCCCcCcCCChhhHHHHHHHHHHHHHhcCccccccccceecCCc---ccccCChhhhhhhcCCe-EEEEEEcCC
Confidence 47999999997653 56777777888766554321 24445543 38999999999999999 999999999
Q ss_pred CCCCCcccCcCCcchhHHH
Q psy15740 84 KGNYGFLLPASHILPVGRE 102 (114)
Q Consensus 84 ~g~~GF~lP~~~I~p~~~E 102 (114)
.++..++.|.++|.+..++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~ 357 (360)
T cd06905 339 LPTEAGVKKYDFIQWFREH 357 (360)
T ss_pred CCcccCCChHHhhhhhhhc
Confidence 9999999999988887665
No 18
>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification. ; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....
Probab=99.45 E-value=1.6e-13 Score=106.62 Aligned_cols=93 Identities=27% Similarity=0.259 Sum_probs=75.9
Q ss_pred eEEEeccCCCCCCCCCCHHHHHHHHHHHh-Hhhhhc---cc-eeee--eeeeeeccCchhhhhcccCCccEEEEEEeecC
Q psy15740 12 FRVLSPKSDNYFQLPLCLGNLYKVMRKKG-LIERLT---CF-RQFK--FLLFVLHSWASDDWAKGVAKIKYTYTIELRDK 84 (114)
Q Consensus 12 ~~iL~Pyg~~~~~~p~n~~~l~~va~~~a-ai~~~~---~Y-~~g~--~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~ 84 (114)
-.+++||++++...|++.+.+..+++..+ ++.... .| ++|. +...|.++|++.||++...|++++||+||++.
T Consensus 180 ~~~~~p~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~G~~~D~~~~~~g~~~~~t~E~~~~ 259 (279)
T PF00246_consen 180 NAILYPYGYSYDEPPPDADELRSLARAFAEALGSMSRGQNYDSYGITNGDNWYPASGSSDDYAYYHHGIPFSFTLELGCC 259 (279)
T ss_dssp SEEEESESSSSTSSTTTHHHHHHHHHHHHHHHHCHTTTTTBSEEEEEHHHHTTTTSSSHHHHHHHHTTSSEEEEEEESSS
T ss_pred cceeeecccccccCCchhhhhhHHHHHHHHHhhhccccccccccCCcccccccccccccceeehhhcCCcEEEEEEeCCC
Confidence 35679999987555789999999998876 665422 46 6662 34489999999999999999999999999997
Q ss_pred CCCCcccCcCCcchhHHHHHHH
Q psy15740 85 GNYGFLLPASHILPVGRESLAA 106 (114)
Q Consensus 85 g~~GF~lP~~~I~p~~~E~~~g 106 (114)
+. |.+|+++|.++++|+|++
T Consensus 260 ~~--f~p~~~~i~~~~~~~~~~ 279 (279)
T PF00246_consen 260 GN--FYPPASEIEPIWEENWEA 279 (279)
T ss_dssp SS--TSS-GGGHHHHHHHHHH-
T ss_pred CC--ccCCHHHHHHHHHHHhhC
Confidence 66 999999999999999985
No 19
>cd06226 M14_CPT_like Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase (CP) T (CPT)-like proteins. This group belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues and C-terminal positively charged residues. However, CPT does not belong to this CPT-like group.
Probab=99.35 E-value=1.6e-12 Score=103.91 Aligned_cols=88 Identities=19% Similarity=0.143 Sum_probs=64.8
Q ss_pred eEEEeccCCCCCCCCCCHHHHHHHHHHHhHhhhhccceeeeeeeeeeccCchhhhhcccCCccEEEEEEeecCCCCCccc
Q psy15740 12 FRVLSPKSDNYFQLPLCLGNLYKVMRKKGLIERLTCFRQFKFLLFVLHSWASDDWAKGVAKIKYTYTIELRDKGNYGFLL 91 (114)
Q Consensus 12 ~~iL~Pyg~~~~~~p~n~~~l~~va~~~aai~~~~~Y~~g~~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~g~~GF~l 91 (114)
-+||+|||++. ..++|..++++|++.++. .+.|++.++..+|+++|++.||+|..+|++ +||+||++. +|.
T Consensus 202 ~~i~~P~g~~~-~~~p~~~~~~~la~~~~~---~~gy~~~~~~~~Y~~~G~~~Dw~y~~~gi~-s~TiElg~~---~~~- 272 (293)
T cd06226 202 NLVLYPWGWTT-QPAPNDTQLRALGRKFAS---FNGYTPQQSVGLYPTDGTTDDWSYGELGVA-AYTFEIGTS---FFQ- 272 (293)
T ss_pred CeEeecCcCCC-CCCCCHHHHHHHHHHHhh---cCCccccccceEEecCCChhHhHhhcCCce-EEEEEccCC---CCC-
Confidence 36899999985 456799999999987553 335666667889999999999999999997 999999765 443
Q ss_pred CcCCc-chhHHHHHHHHH
Q psy15740 92 PASHI-LPVGRESLAAIK 108 (114)
Q Consensus 92 P~~~I-~p~~~E~~~gi~ 108 (114)
|++.+ ...-.|.-.++.
T Consensus 273 ~~~~~~~~~~~~n~~~~~ 290 (293)
T cd06226 273 SCSSFESGILPDNRPALY 290 (293)
T ss_pred CcccccccccccCHHHHh
Confidence 34433 234444444443
No 20
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=99.30 E-value=9e-12 Score=102.51 Aligned_cols=99 Identities=10% Similarity=0.004 Sum_probs=80.1
Q ss_pred ceEEEeccCCCC-----CCCCCCHHHHHHHHHHHh-Hhhhhc------------cceee--eeeeeeeccCchhhhhccc
Q psy15740 11 RFRVLSPKSDNY-----FQLPLCLGNLYKVMRKKG-LIERLT------------CFRQF--KFLLFVLHSWASDDWAKGV 70 (114)
Q Consensus 11 ~~~iL~Pyg~~~-----~~~p~n~~~l~~va~~~a-ai~~~~------------~Y~~g--~~~~lY~asG~S~Dw~~~~ 70 (114)
-.+++|||+++. ...++|.+.++.||+.++ |+.+.+ .|..| ++..+|+++|++.||.|.
T Consensus 177 ~~~~~yPy~~~~~~~~~~~~~pd~~~~~~la~~~a~a~~~m~~~~~c~~~~~~~~~~~Gi~nga~wY~~~GgmqDw~y~- 255 (375)
T cd03863 177 SLVVNYPFDDDEQGIAIYSKSPDDAVFQQLALSYSKENKKMYQGSPCKDLYPTEYFPHGITNGAQWYNVPGGMQDWNYL- 255 (375)
T ss_pred CEEEEccCcCCCcccccCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCccccccccCCCCccCCceEEecCCChhhhhhh-
Confidence 457889999972 234679999999998876 664433 25567 367899999999999995
Q ss_pred CCccEEEEEEeecCCCCCcccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 71 AKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 71 ~gi~~syt~ELrd~g~~GF~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
.+..+++|+||++. ..+|++++.....+.-+++++++++|
T Consensus 256 ~~~~~e~T~El~~~----k~p~~~~l~~~w~~n~~all~~~~~~ 295 (375)
T cd03863 256 NTNCFEVTIELGCV----KYPKEEELPKYWEQNRRSLLQFMKQV 295 (375)
T ss_pred hcCeEEEEEecCcc----cCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999984 44888999999999999999998765
No 21
>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs). However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide . ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.
Probab=99.25 E-value=8.8e-12 Score=97.08 Aligned_cols=77 Identities=17% Similarity=0.162 Sum_probs=59.7
Q ss_pred eEEEeccCCCCCCCCCCHHHHHHHHHHHh-HhhhhccceeeeeeeeeeccCchhhhhcccCCccEEEEEEeecCCCCCcc
Q psy15740 12 FRVLSPKSDNYFQLPLCLGNLYKVMRKKG-LIERLTCFRQFKFLLFVLHSWASDDWAKGVAKIKYTYTIELRDKGNYGFL 90 (114)
Q Consensus 12 ~~iL~Pyg~~~~~~p~n~~~l~~va~~~a-ai~~~~~Y~~g~~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~g~~GF~ 90 (114)
-+|++||+.+ . | .++++++ ++.+.+.|+++.+.- |+++|++.||+++..|++ +||+||++++. .
T Consensus 174 ~~i~~~~~~~--~-~-------~~~~~~~~~~~~~~gy~~~~~~~-~~~~G~~~Dw~~~~~gi~-s~t~El~~~~~---~ 238 (255)
T cd06229 174 EEIYWGYGGL--E-P-------PESQKMAELLAEVSGYELVDSES-KRSYGGYKDWFIQKFRRP-GFTIEIGRGTN---P 238 (255)
T ss_pred CeEEecCCCC--C-c-------hHHHHHHHHHhhccCCccccccc-cCCCCCHHHHHHhhcCCe-EEEEEeCCCCC---C
Confidence 3688888743 2 3 3334444 666667798886433 999999999999999999 99999999753 7
Q ss_pred cCcCCcchhHHHH
Q psy15740 91 LPASHILPVGRES 103 (114)
Q Consensus 91 lP~~~I~p~~~E~ 103 (114)
||.+||.++.+|.
T Consensus 239 ~~~~~~~~~~~~~ 251 (255)
T cd06229 239 LPLSQFKTIYKEN 251 (255)
T ss_pred CChHHhHHHHHhh
Confidence 8999999999985
No 22
>cd03862 Peptidase_M14-like_7 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.10 E-value=1.7e-10 Score=91.49 Aligned_cols=70 Identities=13% Similarity=-0.046 Sum_probs=54.9
Q ss_pred eEEEeccCCCCCCCCCCHHHHHHHHHHHhHhhhhccceeeeeeeeeeccCchhhhhcccCC------ccEEEEEEee
Q psy15740 12 FRVLSPKSDNYFQLPLCLGNLYKVMRKKGLIERLTCFRQFKFLLFVLHSWASDDWAKGVAK------IKYTYTIELR 82 (114)
Q Consensus 12 ~~iL~Pyg~~~~~~p~n~~~l~~va~~~aai~~~~~Y~~g~~~~lY~asG~S~Dw~~~~~g------i~~syt~ELr 82 (114)
-+|++||||+++. ++|.+++.++++........+.|++|++..+|.++|+|.||+|+.++ +.++||+||.
T Consensus 164 ~~i~~Pyg~~~~~-~~~~~~~~~l~~~~~~~~~~~~Y~~g~~s~~Y~a~G~~~D~~y~~~~~~~~~~~~l~~TlE~G 239 (273)
T cd03862 164 DRIWFPYAYTKEP-IPHLAEIYALKELLERTYPNHVYRFEPQSRHYLTHGDLWDYLYDQHQKQQPNGRFLPLTLEMG 239 (273)
T ss_pred CEEEcCCcCCCCC-CCCHHHHHHHHHHHHHhCCCCceEECCcceeEECCCCHHHHHHhhcCcccccccceeEEEEee
Confidence 4788999998765 56899999998764422223479998655589999999999998664 4789999996
No 23
>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. M
Probab=98.77 E-value=1.1e-08 Score=80.76 Aligned_cols=72 Identities=11% Similarity=0.003 Sum_probs=54.5
Q ss_pred eEEEeccCCCCCCCCCCHHHHHHHHHH--Hh-Hhhhhc--cceeeeeeeeeeccCchhhhhcccCCccEEEEEEeecCCC
Q psy15740 12 FRVLSPKSDNYFQLPLCLGNLYKVMRK--KG-LIERLT--CFRQFKFLLFVLHSWASDDWAKGVAKIKYTYTIELRDKGN 86 (114)
Q Consensus 12 ~~iL~Pyg~~~~~~p~n~~~l~~va~~--~a-ai~~~~--~Y~~g~~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~g~ 86 (114)
-.+| ||++... +++..+++.+++. .. ++...+ .|++++...+|+++|+|.||+++.+|+++|||+||++.|.
T Consensus 167 ~~f~--yG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~gtsr~~~~~~~~i~~syTlE~~~~g~ 243 (269)
T cd03856 167 NVFM--YGCSFKD-EVWDQGYRIIPKMLSQNAPLFCMFGCSFKVEKSKASDPDRGTGRVVVAKQIKVQHSYTMEVTFNGN 243 (269)
T ss_pred ceEe--ecCCCch-hhhhhHHHHHHHHHHhhChhhhhcCCCcCCCcCCcccCCCChHHHHHHHhcCCcEEEEEecCCCCc
Confidence 3444 8887654 4577777766654 23 665554 7888865448999999999999999999999999999853
No 24
>cd06237 M14_Nna1_like_3 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=98.69 E-value=2e-08 Score=78.43 Aligned_cols=77 Identities=10% Similarity=0.014 Sum_probs=51.9
Q ss_pred EEEeccCCCCCCCCCCHHHHHHHHHHH-hHhhhh-ccceeeeeeeeeeccCchhhhhcccCCccEEEEEEeecCCCCCcc
Q psy15740 13 RVLSPKSDNYFQLPLCLGNLYKVMRKK-GLIERL-TCFRQFKFLLFVLHSWASDDWAKGVAKIKYTYTIELRDKGNYGFL 90 (114)
Q Consensus 13 ~iL~Pyg~~~~~~p~n~~~l~~va~~~-aai~~~-~~Y~~g~~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~g~~GF~ 90 (114)
.|+|||++...... . . .+... .++.+. +.|+++++.-+|+++|+|.||+++..|++ +||+||+|+
T Consensus 160 ~i~~~~~~~~~~~~--p-~---~~~~~~~~l~~~~~~Y~~~~~~~~~~~~g~~~Dw~~~~~~~~-~~T~E~g~~------ 226 (244)
T cd06237 160 DVFYTMPEDYKLQF--P-G---FVADWLKELDKRILDYKVNNRSGSSPDRGVSKQYFADEHGAH-AITYEVGDN------ 226 (244)
T ss_pred ceEecCCCCCCccc--c-h---HHHHHHHHhcCcCCCceeccccCcccCCCcHHHHHHHhCCCc-EEEEecCCC------
Confidence 48999887544321 1 1 22222 245333 57998865555799999999999999999 999999986
Q ss_pred cCcCCcchhHHH
Q psy15740 91 LPASHILPVGRE 102 (114)
Q Consensus 91 lP~~~I~p~~~E 102 (114)
-|.+.|...++-
T Consensus 227 ~~~~~~~~~~~~ 238 (244)
T cd06237 227 TPRDFIKKKAKV 238 (244)
T ss_pred ChHHHHHHHHHH
Confidence 344455555543
No 25
>cd00596 Peptidase_M14_like The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring
Probab=98.61 E-value=1.7e-07 Score=69.16 Aligned_cols=87 Identities=21% Similarity=0.138 Sum_probs=63.2
Q ss_pred eEEEeccCCCCCCCCCCHHHHHHHHHHHh-HhhhhccceeeeeeeeeeccCchhhhhcccCCccEEEEEEeecCCCCCcc
Q psy15740 12 FRVLSPKSDNYFQLPLCLGNLYKVMRKKG-LIERLTCFRQFKFLLFVLHSWASDDWAKGVAKIKYTYTIELRDKGNYGFL 90 (114)
Q Consensus 12 ~~iL~Pyg~~~~~~p~n~~~l~~va~~~a-ai~~~~~Y~~g~~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~g~~GF~ 90 (114)
-.+++||++++.. +++.....++++..+ ++. ...+.++.....|.++|++.||++...|+ .+||+|+.+.+..
T Consensus 107 ~~~~~p~~~~~~~-~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~g~~~d~~~~~~~~-~~~tiE~g~~~~~--- 180 (196)
T cd00596 107 LGVLYPYSHSDTP-PPDAEIPKALAQLLADAAR-GSKYGVGFGAKWYETGGGFDDWAYGNHGC-PSFTIELGGQGYP--- 180 (196)
T ss_pred ceEEecCCCCCCC-CCCHHHHHHHHHHHHHhcc-CCCCceeecceEEEcCCchhhhhhhCCCc-EEEEEEeCCCCCC---
Confidence 5789999998765 468888888887766 333 22455553322399999999999965555 7999999987544
Q ss_pred cCcCCcchhHHHHHH
Q psy15740 91 LPASHILPVGRESLA 105 (114)
Q Consensus 91 lP~~~I~p~~~E~~~ 105 (114)
|.+++.+..+|.-.
T Consensus 181 -~~~~~~~~~~~~~~ 194 (196)
T cd00596 181 -PEEELPSRGEENKE 194 (196)
T ss_pred -CHHHHHHHHHHHHh
Confidence 77777777776644
No 26
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=98.49 E-value=5.5e-07 Score=73.96 Aligned_cols=97 Identities=9% Similarity=-0.084 Sum_probs=75.0
Q ss_pred eEEEeccCCCCCCCCCCHHHHHHHHHHHh-Hhhhhc------------cceeee--eeeeeeccCchhhhhcccCCccEE
Q psy15740 12 FRVLSPKSDNYFQLPLCLGNLYKVMRKKG-LIERLT------------CFRQFK--FLLFVLHSWASDDWAKGVAKIKYT 76 (114)
Q Consensus 12 ~~iL~Pyg~~~~~~p~n~~~l~~va~~~a-ai~~~~------------~Y~~g~--~~~lY~asG~S~Dw~~~~~gi~~s 76 (114)
.+++|||+|+... ++|.++++.||+.++ |....+ .|.-|. ...=|+.+|+.-||.|-.. --+.
T Consensus 174 ~~~~yPy~~~~~~-~pd~~~~~~la~~~a~ah~~m~~~~~~c~~~~~~~~~~Gitnga~wy~~~g~mqd~~y~~~-~~~e 251 (363)
T cd06245 174 VVATYPYDKPVQT-VENKETLKHLAKVYANNHPTMHLGQPGCPNNSDENIPGGVMRGAEWNSHLGSMKDFSVDFG-HCPE 251 (363)
T ss_pred EEEEecCCCCCcC-CCCHHHHHHHHHHHHHhChhhhcCCCCCCCCcccccCCCccccceeecccCCcchhhhhhc-CCce
Confidence 4789999998754 679999999998876 543222 223342 2345889999999999544 4468
Q ss_pred EEEEeecCCCCCcccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 77 YTIELRDKGNYGFLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 77 yt~ELrd~g~~GF~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
.|+||.+ ++.+|.++|...-.+.-++++.++++|
T Consensus 252 ~t~e~~~----~k~P~~~~l~~~w~~n~~all~~~~~~ 285 (363)
T cd06245 252 ITVYTSC----CLFPSASQLPDLWAENKKSLLSMIVEA 285 (363)
T ss_pred eEEEecc----ccCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 8999986 688999999999999999999998875
No 27
>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=97.74 E-value=3.7e-05 Score=60.89 Aligned_cols=69 Identities=14% Similarity=0.060 Sum_probs=49.7
Q ss_pred ccCCC--CCCCCCCHHHHHHHHHHHh-Hhhhhc-ccee-eeeee---eeeccCchhhhhcccCCccEEEEEEeecCCC
Q psy15740 17 PKSDN--YFQLPLCLGNLYKVMRKKG-LIERLT-CFRQ-FKFLL---FVLHSWASDDWAKGVAKIKYTYTIELRDKGN 86 (114)
Q Consensus 17 Pyg~~--~~~~p~n~~~l~~va~~~a-ai~~~~-~Y~~-g~~~~---lY~asG~S~Dw~~~~~gi~~syt~ELrd~g~ 86 (114)
||+|. ++..|++..++.++++.+. ||.+.+ .|.. ++... -....|.+.||++...| .+|||+|++.++.
T Consensus 164 py~f~~g~~~~p~~~~~l~~l~~~~~~al~~~~~~f~~~~~y~~~~~g~~~~~~a~~~~~~~~~-~~s~TlEmpf~~~ 240 (263)
T cd06234 164 PYNFIAGSEGVPGWTPRLAALEARFKAALLRASPDFQTEHGYPKDAPGQANLTIATNWVAHRFD-CLSMTLEMPFKDN 240 (263)
T ss_pred CccEeccCCCCCCccHHHHHHHHHHHHHHHHhCcccccccccCCCCCCchhHHHHHHHHHhhcC-ceEEEEEeecCCc
Confidence 99987 5556655569999998877 887665 3331 11111 14567899999998888 5999999998753
No 28
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=97.15 E-value=0.0021 Score=53.60 Aligned_cols=98 Identities=10% Similarity=-0.069 Sum_probs=71.6
Q ss_pred eEEEeccCCCCC-----------CCCCCHHHHHHHHHHHh-H---hhhhc----cceeee--eeeeeeccCchhhhhccc
Q psy15740 12 FRVLSPKSDNYF-----------QLPLCLGNLYKVMRKKG-L---IERLT----CFRQFK--FLLFVLHSWASDDWAKGV 70 (114)
Q Consensus 12 ~~iL~Pyg~~~~-----------~~p~n~~~l~~va~~~a-a---i~~~~----~Y~~g~--~~~lY~asG~S~Dw~~~~ 70 (114)
..+.|||+++.. ...+|.+-.+.||+.-+ + |.... .|.-|. ...-|+.+|+.-||-|-
T Consensus 196 ~v~~YPyd~~~~~~~~~~~~~~~~~tpDd~~f~~la~~ya~~h~~m~~~~~c~~~f~~gitnGa~wy~~~GgmqD~~Y~- 274 (392)
T cd03864 196 VVANYPYDKSREPRVRGFRRTAYSPTPDDKLFQKLAKTYSYAHGWMHKGWNCGDYFDEGITNGASWYSLSKGMQDFNYL- 274 (392)
T ss_pred eeeeCCcccccccccccccccccCCCCChHHHHHHHHHHHHhCCcccCCCCCcccCCCCcccCceeEecCCCchhhhhh-
Confidence 467799998753 12457777888887643 2 22111 344552 34579999999999994
Q ss_pred CCccEEEEEEeecCCCCCcccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 71 AKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 71 ~gi~~syt~ELrd~g~~GF~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
..--+-.|+||.+. ..+|++++....++.-+++++++++|
T Consensus 275 ~~nc~e~t~el~c~----k~p~~~~l~~~w~~n~~all~~~~~~ 314 (392)
T cd03864 275 HTNCFEITLELSCD----KFPPEEELEREWLGNREALISYIEQV 314 (392)
T ss_pred ccCeeEEEEecccc----CCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 44458899999875 55899999999999999999998875
No 29
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=97.06 E-value=0.0035 Score=52.65 Aligned_cols=98 Identities=6% Similarity=-0.101 Sum_probs=71.2
Q ss_pred eEEEeccCCCCCC-------CCCCHHHHHHHHHHHh-H---hhhhc-------cc--eeee--eeeeeeccCchhhhhcc
Q psy15740 12 FRVLSPKSDNYFQ-------LPLCLGNLYKVMRKKG-L---IERLT-------CF--RQFK--FLLFVLHSWASDDWAKG 69 (114)
Q Consensus 12 ~~iL~Pyg~~~~~-------~p~n~~~l~~va~~~a-a---i~~~~-------~Y--~~g~--~~~lY~asG~S~Dw~~~ 69 (114)
..+.|||+++++. ..+|.+-.+.||+..+ + |.... .+ .-|. ...-|+.+|+.-||.|-
T Consensus 208 lv~~YPyd~~~~~~~~~~~~~tpDd~~Fr~LA~~Ya~~h~~M~~~~~~~c~~~~~~~~~GitNGa~Wy~~~GgmqD~nY~ 287 (405)
T cd03869 208 LVVSYPYDMTRTPWATQEATPTPDDAVFRWLATSYASTHLLMTDASRRVCHTEDFQKEDGIINGASWHTVAGSMNDFSYL 287 (405)
T ss_pred EEEEcCcccccCCccccCCCCCCCHHHHHHHHHHHHHhCHHhhcCCCCCCCCcccccCCCceeCCeeccCCCcccchhhh
Confidence 3456999997543 2457788888987754 2 22110 12 2342 34569999999999994
Q ss_pred cCCccEEEEEEeecCCCCCcccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 70 VAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 70 ~~gi~~syt~ELrd~g~~GF~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
..--+-.|+||.+. ..+|++++...-++.-++++.++++|
T Consensus 288 -~~ncfEiTlElsc~----K~P~~~~L~~~W~~N~~all~~~~~v 327 (405)
T cd03869 288 -HTNCFELSVYLGCD----KFPHESELPEEWENNKESLLVFMEQV 327 (405)
T ss_pred -ccCeEEEEEeccCC----CCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 43448899999874 77999999999999999999998875
No 30
>PRK10602 murein peptide amidase A; Provisional
Probab=96.93 E-value=0.0031 Score=49.36 Aligned_cols=82 Identities=13% Similarity=0.007 Sum_probs=52.4
Q ss_pred CCceEEEeccCCCCCCCCCCHHHHHHHHHHHhHhhhhccceee-eeeeeeeccCchhhhhcccCCccEEEEEEeecCCCC
Q psy15740 9 KSRFRVLSPKSDNYFQLPLCLGNLYKVMRKKGLIERLTCFRQF-KFLLFVLHSWASDDWAKGVAKIKYTYTIELRDKGNY 87 (114)
Q Consensus 9 ~~~~~iL~Pyg~~~~~~p~n~~~l~~va~~~aai~~~~~Y~~g-~~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~g~~ 87 (114)
+.-+.+=.||++..+ | ++.+++++++.. |.++ ..+..|.++|++.||++ ..|||+ +|+||+.
T Consensus 151 ~~~~s~HsP~~~~~~--~----~~~~~~~~la~a-----f~~~~~~~~~y~~~Gs~~~~a~-~~giP~-it~El~~---- 213 (237)
T PRK10602 151 AWVVSFHDPLACIED--P----RHSELGEWLAQA-----FELPLVTSVGYETPGSFGSWCA-DLNLHC-ITAELPP---- 213 (237)
T ss_pred CEEEEeeccccccCC--c----cchHHHHHHHHH-----hCCCeEeecCCCCCCcHHHHHH-HcCCcE-EEEecCC----
Confidence 333444468887432 3 566777665522 2233 24677999999999998 799998 9999984
Q ss_pred CcccCcCCcchhHHHHHHHHHHHHHh
Q psy15740 88 GFLLPASHILPVGRESLAAIKAIARE 113 (114)
Q Consensus 88 GF~lP~~~I~p~~~E~~~gi~~~~~~ 113 (114)
.+.+ ...+..|.+++.+.++
T Consensus 214 ---~~~~---~~v~~~~~~~~~~l~~ 233 (237)
T PRK10602 214 ---ISAD---EASEKYLFAMANLLRW 233 (237)
T ss_pred ---cCcH---HHHHHHHHHHHHHHhc
Confidence 3332 3445556666665543
No 31
>cd06238 Peptidase_M14-like_1_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=96.48 E-value=0.0046 Score=49.20 Aligned_cols=69 Identities=10% Similarity=-0.029 Sum_probs=52.7
Q ss_pred eEEEec---cCCCCCCCCCCHHHHHHHHHHHh-Hhhhhc-cceee-eeeeeeeccCchhhhhcccCCccEEEEEEeecC
Q psy15740 12 FRVLSP---KSDNYFQLPLCLGNLYKVMRKKG-LIERLT-CFRQF-KFLLFVLHSWASDDWAKGVAKIKYTYTIELRDK 84 (114)
Q Consensus 12 ~~iL~P---yg~~~~~~p~n~~~l~~va~~~a-ai~~~~-~Y~~g-~~~~lY~asG~S~Dw~~~~~gi~~syt~ELrd~ 84 (114)
.++++| ++++....|.+.+.+..+++.++ |+.+.. .|..| ..+.+|++.|+|.+|.++..| +++|-...
T Consensus 181 ~~~~~P~~~~~~np~~~p~~~~~~~~~g~~~~~al~~~G~~Y~t~~~~d~~ypg~g~s~~~~~g~ig----~l~E~~~~ 255 (271)
T cd06238 181 TYFFAPGAPPRTNPLTPDQNRDLTATIGRNHAKAFDEIGWLYFTREVFDDFYPGYGSTYPDLNGAIG----MLYEQASS 255 (271)
T ss_pred ceEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcEEecccccccccCcCcchhhhcCcee----EEEEecCC
Confidence 456778 77765566778888888887766 776554 67776 479999999999999987655 78898743
No 32
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=91.33 E-value=0.75 Score=36.49 Aligned_cols=91 Identities=12% Similarity=0.048 Sum_probs=50.6
Q ss_pred ceEEEeccCCCCCCCCCCHHHHHHHHHHHhHhhhhccceeeee--eeeeeccCchhhhhcccCCc-cEEEEEEeecCCCC
Q psy15740 11 RFRVLSPKSDNYFQLPLCLGNLYKVMRKKGLIERLTCFRQFKF--LLFVLHSWASDDWAKGVAKI-KYTYTIELRDKGNY 87 (114)
Q Consensus 11 ~~~iL~Pyg~~~~~~p~n~~~l~~va~~~aai~~~~~Y~~g~~--~~lY~asG~S~Dw~~~~~gi-~~syt~ELrd~g~~ 87 (114)
+..-++|||++.+. +.++.......+..+... ..|....+ .+--...|++.=|+....|+ +.|||+|.+= +
T Consensus 155 ~~~~~F~yG~~~~~-~~~~~~~~~fp~~l~~~~--~~F~~~~~~f~~~~~k~gtar~~~~~~~~~~~~s~TlE~sf---~ 228 (261)
T cd06908 155 SLMNCFIYGNTYDD-VYRYERQLVFPKLLAQNA--EDFSMEHTMFNRDAVKAGTGRRFLGSLLSDNVNCYTLEVSF---Y 228 (261)
T ss_pred cccceeeccccCCc-cccHHHHHHHHHHHHHhC--HHhcccCCcccCCCCCCChHHHHHHHHhCCCceEEEEeecC---C
Confidence 33347899998765 446665555443322110 01222111 11123458888899988894 8999999973 3
Q ss_pred CcccCcCC-cchhHHHHHHHH
Q psy15740 88 GFLLPASH-ILPVGRESLAAI 107 (114)
Q Consensus 88 GF~lP~~~-I~p~~~E~~~gi 107 (114)
|+..-+.. +.+..++-|.-+
T Consensus 229 g~~~~~~~~~~~f~~~~~~~~ 249 (261)
T cd06908 229 GYNLKGTTGITPYTEEGYMRL 249 (261)
T ss_pred cccCCCCCCccccCHHHHHHH
Confidence 44443333 355555555443
No 33
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=91.20 E-value=1.5 Score=36.91 Aligned_cols=98 Identities=8% Similarity=-0.033 Sum_probs=68.8
Q ss_pred eEEEeccCCCCCC------CCCCHHHHHHHHHHHh----Hhhhh----------c-cceeee--eeeeeeccCchhhhhc
Q psy15740 12 FRVLSPKSDNYFQ------LPLCLGNLYKVMRKKG----LIERL----------T-CFRQFK--FLLFVLHSWASDDWAK 68 (114)
Q Consensus 12 ~~iL~Pyg~~~~~------~p~n~~~l~~va~~~a----ai~~~----------~-~Y~~g~--~~~lY~asG~S~Dw~~ 68 (114)
...-|||..+... ..+|.+-.+.||+.-+ .|... . .+.-|. ...=|+.+|+.-||-|
T Consensus 204 lva~YP~D~~~~~~~~~~s~~pDd~~f~~lA~~Ya~~h~~m~~~~~~~c~~~~~~~~f~~GitNGa~Wy~~~GgmqD~ny 283 (402)
T cd03865 204 LVANYPYDETRSGSAHEYSACPDDAIFKSLARAYSSLNPAMSDPNRPPCRKNDDDSSFVDGTTNGGAWYSVPGGMQDFNY 283 (402)
T ss_pred EEEECCCCCCCCCCcccccCCCChHHHHHHHHHHHhhCHHhhcCCCCCCCCCCccccCCCCeecCceecccCCcccchhh
Confidence 4567899886421 2357788888887633 23211 0 234442 3446999999999999
Q ss_pred ccCCccEEEEEEeecCCCCCcccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 69 GVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 69 ~~~gi~~syt~ELrd~g~~GF~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
- ..=-+-.|+||.+. . .+|++++....++.-++++.++++|
T Consensus 284 ~-~~nc~eiT~El~c~-K---~P~~~~L~~~W~~n~~all~~~~q~ 324 (402)
T cd03865 284 L-SSNCFEITVELSCD-K---FPPEETLKQYWEDNKNSLVNYIEQV 324 (402)
T ss_pred h-ccCceEEEEEecCC-C---CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 44448899999975 2 2778899999999999999988764
No 34
>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc
Probab=86.73 E-value=2.3 Score=33.36 Aligned_cols=47 Identities=15% Similarity=-0.073 Sum_probs=32.4
Q ss_pred eeccCchhhhhcccCCccEEEEEEeecCCCCCcccCcCCcchhHHHHHHH
Q psy15740 57 VLHSWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAA 106 (114)
Q Consensus 57 Y~asG~S~Dw~~~~~gi~~syt~ELrd~g~~GF~lP~~~I~p~~~E~~~g 106 (114)
....|++....+...++++|||+|.+=. |+..-+........|-|..
T Consensus 201 ~~k~~tar~~~~~~~~~~~syTlE~sf~---g~~~~~~~~~~~~~~~~~~ 247 (258)
T cd06235 201 KDKEGTARVALWRELGIPNSYTLETSFG---GYDKGNRAGTHFTIEDLKE 247 (258)
T ss_pred CCCCCcHHHHHHHHcCCceEEEEeeecc---ccccCCCcCCCCCHHHHHH
Confidence 3467899999999999999999999843 4444443344444444443
No 35
>cd06904 M14_MpaA_like Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A (MpaA) and related proteins. MpaA is a member of the M14 family of metallocarboxypeptidases (MCPs), however it has an exceptional type of activity, it hydrolyzes the gamma-D-glutamyl-meso-diaminopimelic acid (gamma-D-Glu-Dap) bond in murein peptides. MpaA is specific for cleavage of the gamma-D-Glu-Dap bond of free murein tripeptide; it may also cleave murein tetrapeptide. MpaA has a different substrate specificity and cellular role than endopeptidase I, ENP1 (ENP1 does not belong to this group). MpaA works on free murein peptide in the recycling pathway.
Probab=86.03 E-value=0.56 Score=34.64 Aligned_cols=28 Identities=25% Similarity=0.148 Sum_probs=23.1
Q ss_pred eeccCchhhhhcccCCccEEEEEEeecCC
Q psy15740 57 VLHSWASDDWAKGVAKIKYTYTIELRDKG 85 (114)
Q Consensus 57 Y~asG~S~Dw~~~~~gi~~syt~ELrd~g 85 (114)
+.+.|+..||+....|+| ++|+||....
T Consensus 137 ~~~~G~~~~~a~~~~gip-~it~Elg~~~ 164 (178)
T cd06904 137 YPTPGSLGSWAGVERNIP-VITIELPYNL 164 (178)
T ss_pred ccCCCcHHHHHhhcCCCe-EEEEEcCCcc
Confidence 446899999998666997 9999998753
No 36
>KOG2649|consensus
Probab=56.57 E-value=19 Score=31.43 Aligned_cols=97 Identities=10% Similarity=-0.065 Sum_probs=63.4
Q ss_pred EEEeccCCCCCC-----CCCCHHHHHHHHHHHh----Hhhhhc-------cceee-e--eeeeeeccCchhhhhcccCCc
Q psy15740 13 RVLSPKSDNYFQ-----LPLCLGNLYKVMRKKG----LIERLT-------CFRQF-K--FLLFVLHSWASDDWAKGVAKI 73 (114)
Q Consensus 13 ~iL~Pyg~~~~~-----~p~n~~~l~~va~~~a----ai~~~~-------~Y~~g-~--~~~lY~asG~S~Dw~~~~~gi 73 (114)
..-|||-.+.+. ..++.+-.+.||+.-+ .+.... .+..| . ...=|..+|+.-||-|=..+-
T Consensus 261 vanYPfD~~~~~~~~~s~tpDd~~F~~La~~YA~~h~~M~~~~~~~~~~~~~~~~GItNGA~Wy~v~GgMqDfnYLhTNC 340 (500)
T KOG2649|consen 261 VANYPFDDTEDKRKYYSASPDDATFRFLARIYAKSHRNMSLGKRCECDGNNGSVGGITNGASWYPVYGGMQDWNYLHTNC 340 (500)
T ss_pred EEEccccCCcccccccCCCCCcHHHHHHHHHHHhhChhhhcCCCCcccccCCCcCceecCcceeecCCcccchhhhhcCe
Confidence 445666554322 2357777778886643 233211 12222 1 234699999999999954444
Q ss_pred cEEEEEEeecCCCCCcccCcCCcchhHHHHHHHHHHHHHhC
Q psy15740 74 KYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIAREF 114 (114)
Q Consensus 74 ~~syt~ELrd~g~~GF~lP~~~I~p~~~E~~~gi~~~~~~v 114 (114)
+-.|+||.+. . | ++.+++....++.-+.+..++++|
T Consensus 341 -fEiTiElgC~-K--f-P~e~eLp~~WE~Nr~sLl~f~eqv 376 (500)
T KOG2649|consen 341 -FEITLELSCE-K--F-PKESELPTLWEYNRKSLLNFVEQV 376 (500)
T ss_pred -EEEEEEeccc-c--C-CchhhhHHHHHhhHHHHHHHHHHH
Confidence 7789999874 2 2 777888888899999999888875
No 37
>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna
Probab=35.95 E-value=37 Score=27.39 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=25.8
Q ss_pred cCchhhhhcccCCccEEEEEEeec----CCC-CCcccCcCCcchhHHHH
Q psy15740 60 SWASDDWAKGVAKIKYTYTIELRD----KGN-YGFLLPASHILPVGRES 103 (114)
Q Consensus 60 sG~S~Dw~~~~~gi~~syt~ELrd----~g~-~GF~lP~~~I~p~~~E~ 103 (114)
-|++.=..+...||+.|||+|..= .|. .|.+.-....+..|+.-
T Consensus 224 ~gTaRv~~~~~~~i~~syTlE~Sf~G~~~g~~~g~~f~~~~~~~~G~~~ 272 (278)
T cd06906 224 ESTARVVVWREIGVQRSYTMESTLCGCDQGKYKGLQIGTKELEEMGAKF 272 (278)
T ss_pred CCCeeEehhhhcCCceEEEEEEEeccccccCcCceecCHHHHHHHHHHH
Confidence 344555555568999999999862 233 25555444444444433
No 38
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=35.08 E-value=49 Score=26.13 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=32.1
Q ss_pred hHh-hhhccceee-eeeeeee--ccCchhhhhcccCCccEEEEEEeecC
Q psy15740 40 GLI-ERLTCFRQF-KFLLFVL--HSWASDDWAKGVAKIKYTYTIELRDK 84 (114)
Q Consensus 40 aai-~~~~~Y~~g-~~~~lY~--asG~S~Dw~~~~~gi~~syt~ELrd~ 84 (114)
||| +.+...-.. ++.+||. ||||+.-.+.+..|-...|.+|..+.
T Consensus 63 AaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R 111 (231)
T COG1889 63 AAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPR 111 (231)
T ss_pred HHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecch
Confidence 345 333334333 4678876 89999999998888777899998864
No 39
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=34.60 E-value=75 Score=25.83 Aligned_cols=46 Identities=20% Similarity=0.068 Sum_probs=30.4
Q ss_pred ccCchhhhhcccCCccEEEEEEeecCCCCCcccCcCCcchhHHHHHHHHHHHHHh
Q psy15740 59 HSWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIARE 113 (114)
Q Consensus 59 asG~S~Dw~~~~~gi~~syt~ELrd~g~~GF~lP~~~I~p~~~E~~~gi~~~~~~ 113 (114)
.+|+|.|++....|+| ++|+|+...+.. -+ ..++..-+||+-++++
T Consensus 188 ~~~gs~~~a~~~~Gip-~i~~E~Gg~~~~----~~----~~~~~~~~gi~~vL~~ 233 (325)
T TIGR02994 188 DSVGMYDTAAEEMGKV-FVTTELGGGGTA----SA----RTIKIAKRGVRNVLRH 233 (325)
T ss_pred CCCccHHHHHHHCCCe-EEEEeCCCCCcC----CH----HHHHHHHHHHHHHHHH
Confidence 4567999998789997 899999865432 11 3344455555555443
No 40
>PF05017 TMP: TMP repeat; InterPro: IPR007713 This short repeat consists of the motif WXXh where X can be any residue and h is a hydrophobic residue. The repeat is named TMP after its occurrence in the tape measure protein (TMP). Tape measure protein is a component of phage tail and probably forms a beta-helix. Truncated forms of TMP lead to shortened tail fibres []. This repeat is also found in non-phage proteins where it may play a structural role.
Probab=26.87 E-value=26 Score=14.67 Aligned_cols=10 Identities=20% Similarity=0.185 Sum_probs=6.6
Q ss_pred HHHHHHHHHh
Q psy15740 104 LAAIKAIARE 113 (114)
Q Consensus 104 ~~gi~~~~~~ 113 (114)
|+||+.++..
T Consensus 1 Wn~Ik~~~s~ 10 (11)
T PF05017_consen 1 WNGIKSFFSG 10 (11)
T ss_pred CchHHHHhhc
Confidence 6777776643
No 41
>PF03380 DUF282: Caenorhabditis protein of unknown function, DUF282; InterPro: IPR005044 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=25.81 E-value=42 Score=19.46 Aligned_cols=20 Identities=35% Similarity=0.689 Sum_probs=16.2
Q ss_pred chhhhhcccCCccEEEEEEe
Q psy15740 62 ASDDWAKGVAKIKYTYTIEL 81 (114)
Q Consensus 62 ~S~Dw~~~~~gi~~syt~EL 81 (114)
+..||..-..-+++.|++.+
T Consensus 20 s~~~wC~taaev~v~Ytlg~ 39 (39)
T PF03380_consen 20 SLSDWCATAAEVPVTYTLGL 39 (39)
T ss_pred CccccccCccccceEEEecC
Confidence 67899987778888898754
No 42
>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N
Probab=24.19 E-value=2.9e+02 Score=22.01 Aligned_cols=23 Identities=9% Similarity=-0.083 Sum_probs=14.7
Q ss_pred CchhhhhcccCCccEEEEEEeecC
Q psy15740 61 WASDDWAKGVAKIKYTYTIELRDK 84 (114)
Q Consensus 61 G~S~Dw~~~~~gi~~syt~ELrd~ 84 (114)
|++.=-.+...++ .|||+|..=.
T Consensus 207 ~t~Rv~~~~~~~~-~syTlE~s~~ 229 (261)
T cd06907 207 GTGRVVMWRLGIL-NSFTMEATFC 229 (261)
T ss_pred CCceEEhhhhcCc-eEEEEeeEcc
Confidence 4444444444566 9999999843
No 43
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=20.10 E-value=55 Score=21.98 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=21.0
Q ss_pred ccEEEEEEeecC--CCC--CcccCcCCcchhHHHHHH
Q psy15740 73 IKYTYTIELRDK--GNY--GFLLPASHILPVGRESLA 105 (114)
Q Consensus 73 i~~syt~ELrd~--g~~--GF~lP~~~I~p~~~E~~~ 105 (114)
.|=||.+.|..+ |.+ ||+-+...|..|..+.-.
T Consensus 24 kpGsYiFRlSCTrLGQWAIGyV~~dg~I~QTIPqnk~ 60 (86)
T PF02762_consen 24 KPGSYIFRLSCTRLGQWAIGYVTQDGKILQTIPQNKS 60 (86)
T ss_dssp STTEEEEEEESSSTTSEEEEEEETTSEEEEE--SSS-
T ss_pred CcccEEEeeccccccceeEEEEcCCCcEEEecCCCch
Confidence 455788888877 554 888888877766544433
Done!