RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15740
(114 letters)
>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex,
glycoprotein, hydrolase, metal-binding, metalloprotease,
protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A
Length = 309
Score = 88.6 bits (220), Expect = 1e-22
Identities = 28/52 (53%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 62 ASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIARE 113
SDDW + IKY++T ELRDKG YGFLLP S+I P E+L A+ IA
Sbjct: 254 GSDDWIYDL-GIKYSFTFELRDKGKYGFLLPESYIRPTCSEALVAVAKIASH 304
>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens}
SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A
Length = 402
Score = 89.1 bits (221), Expect = 2e-22
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 60 SWASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIARE 113
+ SDDWA I+Y++T ELRD G YGFLLP S I E+ AIK +A
Sbjct: 344 AGGSDDWAYD-QGIRYSFTFELRDTGRYGFLLPESQIRATCEETFLAIKYVASY 396
>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous
protein inhibitor, metalloprotease carboxypeptidase,
hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1
PDB: 4a94_A 2pcu_A*
Length = 308
Score = 88.2 bits (219), Expect = 2e-22
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 62 ASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIARE 113
+S DWA IK+ +T ELRD G YGFLLPA+ I+P E+ +K I
Sbjct: 252 SSIDWAYD-NGIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLGLKTIMEH 302
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein
S glycoprotein, hydrolase, metal-binding,
metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL
BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A*
3d67_A*
Length = 401
Score = 88.3 bits (219), Expect = 4e-22
Identities = 28/52 (53%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 62 ASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIARE 113
SDDW + IKY++T ELRDKG YGFLLP S+I P E+L A+ IA
Sbjct: 346 GSDDWIYDL-GIKYSFTFELRDKGKYGFLLPESYIRPTCSEALVAVAKIASH 396
>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase;
1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A
Length = 401
Score = 87.9 bits (218), Expect = 5e-22
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 62 ASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIARE 113
S DW+ IKY++ ELRD G YGFLLPA ILP E+ +KAI
Sbjct: 345 GSIDWSYDY-GIKYSFAFELRDTGRYGFLLPARQILPTAEETWLGLKAIMEH 395
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen,
metalloprotease, exopropeptidase, hydrolase; HET: NAG;
2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Length = 404
Score = 87.6 bits (217), Expect = 6e-22
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 62 ASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIARE 113
+S DWA IK+ +T ELRD G YGFLLPA+ I+P E+ +K I
Sbjct: 348 SSIDWAYD-NGIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLGLKTIMEH 398
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET:
CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Length = 403
Score = 86.0 bits (213), Expect = 2e-21
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 62 ASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIARE 113
DW IKY+++ ELRD G GFLLPAS I+P +E+ A+ I
Sbjct: 348 GVIDWTYN-QGIKYSFSFELRDTGRRGFLLPASQIIPTAQETWLALLTIMEH 398
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant
inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP:
c.56.5.1
Length = 312
Score = 83.2 bits (206), Expect = 1e-20
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 62 ASDDWAKGVAKIKYTYTIELR--DKGNYGFLLPASHILPVGRESLAAIKAIARE 113
+S+D+A + + +YT EL G GF LP +I V RE+ I AR
Sbjct: 254 SSEDYAHSI-GVPLSYTYELPGLSSGWDGFHLPPQYIEQVCRETWEGIVVGARR 306
>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase
inhibitor, hydrolase/hydrolase inhibitor complex; HET:
GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1
Length = 303
Score = 81.3 bits (201), Expect = 7e-20
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 63 SDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIARE 113
S DW+ IKY++ ELRD G YGFLLPA ILP E+ +KAI
Sbjct: 248 SIDWSYDY-GIKYSFAFELRDTGRYGFLLPARQILPTAEETWLGLKAIMEH 297
>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase,
hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB: 1cpx_A
1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P 1elm_P
1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A* 3fvl_A*
3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...
Length = 307
Score = 80.9 bits (200), Expect = 7e-20
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 62 ASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIARE 113
S DW+ IKY++T ELRD G YGFLLPAS I+P +E+ + I
Sbjct: 253 GSIDWSYN-QGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTIMEH 303
>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa}
SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A*
2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A*
2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A*
2pjc_A* 1zli_A ...
Length = 306
Score = 80.5 bits (199), Expect = 1e-19
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 62 ASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIARE 113
SDDWA IKY++T ELRDKG YGF+LP S I E++ AIK +
Sbjct: 251 GSDDWAYD-QGIKYSFTFELRDKGRYGFILPESQIQATCEETMLAIKYVTNY 301
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 78.0 bits (192), Expect = 2e-18
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 62 ASDDWAKGVAKIKYTYTIEL---RDKGNY-GFLLPASHILPVGRESLAAIKAIARE 113
+ D+A ++YT EL R+ + GFL+ I G E+ IK AR
Sbjct: 365 GASDYAMQA-AAPFSYTYELPAYRNSVWFDGFLVDPDFIEQAGFETWEGIKVGARA 419
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris}
PDB: 1obr_A 3qnv_A
Length = 323
Score = 75.8 bits (187), Expect = 7e-18
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 62 ASDDWAKGVAKIKYTYTIELRDKGNY-GFLLPASHILPVGRESLAAIKAIARE 113
DDWA G + +T E+ GF P I + A+ +A +
Sbjct: 260 GMDDWAYGQH-KIFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEAVLYVAEK 311
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 39.1 bits (91), Expect = 9e-05
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 63 SDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVG-RESLAAIKAIARE 113
D+ + + TIEL PA+ LP + + A++ + R+
Sbjct: 289 MQDFNYAFSNC-FELTIEL-----SCCKYPAASTLPQEWQRNKASLLQLLRQ 334
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 36.9 bits (85), Expect = 6e-04
Identities = 6/51 (11%), Positives = 13/51 (25%), Gaps = 5/51 (9%)
Query: 63 SDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIARE 113
D+ + T+EL P + + A+ +
Sbjct: 273 MQDFNYLHTNC-FEITLELSC----DKFPPEEELQREWLGNKEALIQFLEQ 318
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 36.0 bits (83), Expect = 0.001
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 5/52 (9%)
Query: 62 ASDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILPVGRESLAAIKAIARE 113
DW + TIEL A + ++ ++ ++
Sbjct: 252 GMQDWNYLNT-NCFEVTIELGC----VKYPKAEELPKYWEQNRRSLLQFIKQ 298
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 35.8 bits (82), Expect = 0.002
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 6/36 (16%)
Query: 63 SDDWAKGVAKIKYTYTIELRDKGNYGFLLPASHILP 98
D+ A+ + T+EL P LP
Sbjct: 248 MQDYNYIWAQC-FEITLELSCCK-----YPREEKLP 277
>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
structural genomics, joint CENT structural genomics,
JCSG; 2.39A {Shewanella denitrificans}
Length = 395
Score = 29.4 bits (65), Expect = 0.21
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 11/58 (18%)
Query: 65 DWAKGVAK--IKYTYTIELRDKGN-------YGFLLPASHILPVGRESLAAIKAIARE 113
VA + T+E+ K N G+ + G SL A++A+ +
Sbjct: 337 VACNWVANTFKCLSNTLEMPFKDNANLADPFQGW--SPERSVYFGEASLIAMRAVIDK 392
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.30
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 24/66 (36%)
Query: 17 PKSDNYFQLPLCLGNLYKV----MRKKGLIERLTCFRQFKFLLFVLHSWASDDWAKGVAK 72
P D YF Y ++ ER+T FR FL F + + K
Sbjct: 467 PYLDQYF---------YSHIGHHLKNIEHPERMTLFRM-VFLDF--------RFLE--QK 506
Query: 73 IKYTYT 78
I++ T
Sbjct: 507 IRHDST 512
Score = 28.3 bits (62), Expect = 0.58
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 23/87 (26%)
Query: 15 LSPKSDNYFQLPLCLGNLYKVMRKKGLIERLTCFRQFKFLLFVLHSWASDD-WAKGVA-- 71
+ +SD+ + L + ++ +R RL + ++ L VL +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELR------RLLKSKPYENCLLVL-----LNVQNAKAWNA 261
Query: 72 -----KIKYTYTIELRDKGNYGFLLPA 93
KI T T R K FL A
Sbjct: 262 FNLSCKILLT-T---RFKQVTDFLSAA 284
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 25.6 bits (57), Expect = 2.4
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 3 NVPQFPKSRFRVLSPKSDNYFQLPLCLGNLY 33
+ + FRV S + ++ L G L+
Sbjct: 29 ELTELVPRLFRVASKDRGDLLEVNLQNGILF 59
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 178
Score = 25.8 bits (56), Expect = 3.3
Identities = 6/20 (30%), Positives = 6/20 (30%)
Query: 46 TCFRQFKFLLFVLHSWASDD 65
R K L LH S
Sbjct: 50 VKARDRKLLAIYLHHDESVL 69
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Mus musculus}
Length = 125
Score = 25.3 bits (56), Expect = 3.6
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 3 NVPQFPKSRFRVLSPKSDNYFQLPLCLGNLY 33
++ + ++LS + QL GNL
Sbjct: 37 SLRELITRGAQILSKGNKQLLQLEQKSGNLL 67
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 25.9 bits (57), Expect = 3.8
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 45 LTCFRQFKFLLFVLHSWASDDWAKG 69
L + + L H W +D +G
Sbjct: 345 LYYLPEVEVLGIDYHDWIADPLFEG 369
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 25.9 bits (57), Expect = 3.9
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 52 KFLLFVLHSWASDDWAKG 69
+ +++ W S++W +G
Sbjct: 376 EPVVYYESDWGSEEWTRG 393
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 5.2
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 32 LYKVMRKKGLIERLTCF 48
++ ++ KGLI F
Sbjct: 1743 AFEDLKSKGLIPADATF 1759
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 24.8 bits (55), Expect = 9.1
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 68 KGVAKIKYTYTIELRDKGNYGFLLPASHIL 97
A +T+ DKG LL A HI+
Sbjct: 123 NIKASFVDEHTVRGVDKGGKATLLSAEHIV 152
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 24.5 bits (53), Expect = 9.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 56 FVLHSWASDDWAKG 69
V H+W D++AKG
Sbjct: 415 LVFHNWVKDEFAKG 428
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.142 0.443
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,778,481
Number of extensions: 92932
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 32
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.5 bits)