BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15742
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GDH|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
Length = 241
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 135/217 (62%), Gaps = 32/217 (14%)
Query: 110 VPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVID 169
+P EI A P L KY+ QRY +SR+D+GI +D E
Sbjct: 22 LPPEIAAVPELAKYWAQRYRLFSRFDDGIKLDRE-------------------------- 55
Query: 170 GWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRL 226
GW+SVTPEK+A+HIA R S DVV+D FCG GGNTIQFA +VI+IDIDP K+ L
Sbjct: 56 GWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIAL 115
Query: 227 AQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQG 285
A++NA VYG++ KI+FI GDF LA L+ DVVFLSPPWGGP+YA + +F I +
Sbjct: 116 ARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFDIRTMMSPD- 174
Query: 286 GGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKG 322
G +F++++ I+ N+ Y+LPR +D+ ++ +G G
Sbjct: 175 -GFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGG 210
>pdb|3EGI|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|D Chain D, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
Length = 206
Score = 167 bits (423), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 121/196 (61%), Gaps = 32/196 (16%)
Query: 131 WSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKAS 190
+SR+D+GI +D E GW+SVTPEK+A+HIA R S
Sbjct: 8 FSRFDDGIKLDRE--------------------------GWFSVTPEKIAEHIAGRVSQS 41
Query: 191 ---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 247
DVV+D FCG GGNTIQFA +VI+IDIDP K+ LA++NA VYG++ KI+FI GDF
Sbjct: 42 FKCDVVVDAFCGVGGNTIQFALTGXRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDF 101
Query: 248 FALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQGGGRRLFQVARGISPNVGYYLP 306
LA L+ DVVFLSPPWGGP+YA + +F I G +F++++ I+ N+ Y+LP
Sbjct: 102 LLLASFLKADVVFLSPPWGGPDYATAETFDIRTXXSPD--GFEIFRLSKKITNNIVYFLP 159
Query: 307 RTSDVFEIFHDSGKKG 322
R +D+ ++ +G G
Sbjct: 160 RNADIDQVASLAGPGG 175
>pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys
pdb|2ZZN|B Chain B, The Complex Structure Of Atrm5 And Trnacys
pdb|3AY0|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
pdb|3AY0|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
Length = 336
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 182 HIASRCKASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSH 238
I + +DVV+D F G G F+ C+ K+ +IDI+P + L + N + + H
Sbjct: 188 RIMKKVSLNDVVVDMFAGVG----PFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEH 243
Query: 239 KIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGG 286
KI I D + ++G+ V ++ P ++ + I E+GG
Sbjct: 244 KIIPILSDVREV--DVKGNRVIMNLPKFAHKFIDKALDI----VEEGG 285
>pdb|2ZZM|A Chain A, The Complex Structure Of Atrm5 And Trnaleu
Length = 336
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 182 HIASRCKASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSH 238
I + +DVV+D F G G F+ C+ K+ +IDI+P + L N + + H
Sbjct: 188 RIMKKVSLNDVVVDMFAGVG----PFSIACKNAKKIYAIDINPHAIELLXKNIKLNKLEH 243
Query: 239 KIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGG 286
KI I D + ++G+ V ++ P ++ + I E+GG
Sbjct: 244 KIIPILSDVREV--DVKGNRVIMNLPKFAHKFIDKALDI----VEEGG 285
>pdb|2YX1|A Chain A, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
pdb|2YX1|B Chain B, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
Length = 336
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 182 HIASRCKASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSH 238
I + +DVV+D F G G F+ C+ K+ +IDI+P + L + N + + H
Sbjct: 188 RIXKKVSLNDVVVDXFAGVG----PFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEH 243
Query: 239 KIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGG 286
KI I D + ++G+ V + P ++ + I E+GG
Sbjct: 244 KIIPILSDVREV--DVKGNRVIXNLPKFAHKFIDKALDI----VEEGG 285
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
+DV +D CG GG T++ A ++V +ID +P + + N +G+ + +GD
Sbjct: 34 NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEXNLQRHGLGDNVTLXEGD 90
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 193 VIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP 252
V+D CG G T++ A +V+ +D+ LR+A+ A + KI+F+QGD +A
Sbjct: 45 VLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF 102
Query: 253 SLQGDVV 259
+ D V
Sbjct: 103 KNEFDAV 109
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
Length = 299
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 184 ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDID 220
A++ K+SD+V++ CG G T++ + +KVI+IDID
Sbjct: 37 AAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDID 73
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKI 240
+ +A + D V+D G G I + K + +DIDP L A+ NA GV +
Sbjct: 112 KALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGV--RP 169
Query: 241 QFIQGDFFALAP 252
+F++G A P
Sbjct: 170 RFLEGSLEAALP 181
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKI 240
+ +A + D V+D G G I + K + +DIDP L A+ NA GV +
Sbjct: 112 KALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGV--RP 169
Query: 241 QFIQGDFFALAP 252
+F++G A P
Sbjct: 170 RFLEGSLEAALP 181
>pdb|3LDU|A Chain A, The Crystal Structure Of A Possible Methylase From
Clostridium Difficile 630
Length = 385
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYAR 272
K+ DID + +A+ NA + GV I+F GD + + +PP+G E
Sbjct: 259 KIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYG--ERLE 316
Query: 273 SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFE 313
S+ ++ E G R + N YYL + + FE
Sbjct: 317 DKDSVKQLYKELGYAFRKLK-------NWSYYLITSYEDFE 350
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG 245
DVV+D CG GG T++ A C+ V +ID + + + N + + + + Q I+G
Sbjct: 37 DVVVDVGCGSGGXTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKN-CQIIKG 90
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 193 VIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
V++ CG G T+ A ++ SIDI P L A+ N G+ + ++F+Q + F+L
Sbjct: 41 VLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIFSL 99
>pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine.
pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine
Length = 433
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 171 WYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHN 230
W V PE D V+D FCG G T+ A V+ ++ PA + Q N
Sbjct: 281 WLDVQPE-------------DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQN 327
Query: 231 ASVYGVSH 238
A + G+ +
Sbjct: 328 ARLNGLQN 335
>pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster
Containing E. Coli 23s Ribosomal Rna 5-Methyluridine
Methyltransferase
Length = 433
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 171 WYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHN 230
W V PE D V+D FCG G T+ A V+ ++ PA + Q N
Sbjct: 281 WLDVQPE-------------DRVLDLFCGXGNFTLPLATQAASVVGVEGVPALVEKGQQN 327
Query: 231 ASVYGVSH 238
A + G+ +
Sbjct: 328 ARLNGLQN 335
>pdb|1WS6|A Chain A, The Structure Of Thermus Thermphillus Hb8 Hypothetical
Protein Ttha0928
Length = 171
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 194 IDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS 253
+D F G G ++ A+ + + ++ DP +RL + N G+ ++ + + F
Sbjct: 46 LDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAK 105
Query: 254 LQGD---VVFLSPPW 265
QG+ V F +PP+
Sbjct: 106 AQGERFTVAFXAPPY 120
>pdb|3TLJ|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TLJ|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TM4|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM4|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM5|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
pdb|3TM5|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
Length = 373
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 193 VIDGFCGCGGNTIQFA--AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
V+D CG G I+ A ++I I+ L A+ NA GV KI+FIQGD L
Sbjct: 221 VLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL 280
Query: 251 APSLQG-DVVFLSPPWG 266
+ + D + P+G
Sbjct: 281 SQYVDSVDFAISNLPYG 297
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHK 239
I + + D ++D CG G +++ A+ V IDI+ +RLA+ A G++ K
Sbjct: 24 IHNYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQK 80
>pdb|3A25|A Chain A, Crystal Structure Of P. Horikoshii Tyw2 In Complex With
Adomet
pdb|3A26|A Chain A, Crystal Structure Of P. Horikoshii Tyw2 In Complex With
Mesado
Length = 301
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 12/141 (8%)
Query: 175 TPEKVAQHI--ASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNA 231
+P V + + A K ++V+D F G G ++ A + KVI+I+ DP + N
Sbjct: 132 SPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENI 191
Query: 232 SVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSI---------DNIFP 282
+ V ++ D D + + E+ + SI N P
Sbjct: 192 HLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVRTHEFIPKALSIAKDGAIIHYHNTVP 251
Query: 283 EQGGGRRLFQVARGISPNVGY 303
E+ R F+ + I+ GY
Sbjct: 252 EKLMPREPFETFKRITKEYGY 272
>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx
pdb|3S1L|B Chain B, Crystal Structure Of Apo-Form Furx
pdb|3S1L|C Chain C, Crystal Structure Of Apo-Form Furx
pdb|3S1L|D Chain D, Crystal Structure Of Apo-Form Furx
pdb|3S2E|A Chain A, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|B Chain B, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|C Chain C, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|D Chain D, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|E Chain E, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|F Chain F, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|G Chain G, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|H Chain H, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2F|A Chain A, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|B Chain B, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|C Chain C, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|D Chain D, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|E Chain E, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|F Chain F, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|G Chain G, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|H Chain H, Crystal Structure Of Furx Nadh:furfural
pdb|3S2G|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2I|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
Length = 340
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 192 VVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQH 229
VVI G G G +Q+A A+ +V ++DID AKL LA+
Sbjct: 170 VVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR 208
>pdb|3LCC|A Chain A, Structure Of A Sam-Dependent Halide Methyltransferase From
Arabidopsis Thaliana
Length = 235
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 198 CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQ---FIQGDFFALAPSL 254
CG G + + A+ + V+ +DI + L A YG S K + F++ D F P+
Sbjct: 75 CGGGHDVVAMASPERFVVGLDISESALAKANET---YGSSPKAEYFSFVKEDVFTWRPTE 131
Query: 255 QGDVVF 260
D++F
Sbjct: 132 LFDLIF 137
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYG--VSHKIQFIQG 245
+ +DVV++ G G T++ +KV++ ++DP +A+ + V G V+ K+Q + G
Sbjct: 27 RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPR--LVAELHKRVQGTPVASKLQVLVG 84
Query: 246 D 246
D
Sbjct: 85 D 85
>pdb|2Q2B|A Chain A, Crystal Structure Of The C-Terminal Domain Of Mouse
Acyl-Coa Thioesterase 7
pdb|2Q2B|B Chain B, Crystal Structure Of The C-Terminal Domain Of Mouse
Acyl-Coa Thioesterase 7
Length = 179
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 315 FHDSGKKGSFISLTGRQMFSPSQDME 340
FHD +KG I+++GR F+ ++ ME
Sbjct: 79 FHDKIRKGCVITISGRMTFTSNKSME 104
>pdb|3K6R|A Chain A, Crystal Structure Of Putative Transferase Ph0793 From
Pyrococcus Horikoshii
Length = 278
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 12/141 (8%)
Query: 175 TPEKVAQHI--ASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNA 231
+P V + + A K ++V+D F G G ++ A + KVI+I+ DP + N
Sbjct: 109 SPANVKERVRXAKVAKPDELVVDXFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENI 168
Query: 232 SVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSI---------DNIFP 282
+ V + D D + E+ + SI N P
Sbjct: 169 HLNKVEDRXSAYNXDNRDFPGENIADRILXGYVVRTHEFIPKALSIAKDGAIIHYHNTVP 228
Query: 283 EQGGGRRLFQVARGISPNVGY 303
E+ R F+ + I+ GY
Sbjct: 229 EKLXPREPFETFKRITKEYGY 249
>pdb|2QQ2|A Chain A, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|B Chain B, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|C Chain C, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|D Chain D, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|E Chain E, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|F Chain F, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|G Chain G, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|H Chain H, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|I Chain I, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|J Chain J, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|K Chain K, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|L Chain L, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
Length = 193
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 315 FHDSGKKGSFISLTGRQMFSPSQDME 340
FHD +KG I+++GR F+ ++ ME
Sbjct: 95 FHDKIRKGCVITISGRMTFTSNKSME 120
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 172 YSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQK---VISIDIDPAKLRLAQ 228
YS P A+ K + V+D GG + Q AA + +++ +I P + ++
Sbjct: 88 YSQEPSAXIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQXKGKGLLVTNEIFPKRAKILS 147
Query: 229 HNASVYGVSHKI 240
N +GVS+ I
Sbjct: 148 ENIERWGVSNAI 159
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGD 246
K ++ V+D G G FA +KV++ D+ L++A+ A + G H +++++QGD
Sbjct: 36 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVAR--AFIEGNGHQQVEYVQGD 93
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQK---VISIDIDPAKLRLAQHNASVYGVSHK 239
+A K ++V D GG T A + + + + D+D +LR + N S GV +
Sbjct: 112 VALDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVIYAFDVDENRLRETRLNLSRLGVLNV 171
Query: 240 IQFIQGDFFALAPSLQGDVVFLSPPWGG 267
I F +++ D + L P G
Sbjct: 172 ILFHSSSLHIGELNVEFDKILLDAPCTG 199
>pdb|3NJR|A Chain A, Crystal Structure Of C-Terminal Domain Of Precorrin-6y
C5,15- Methyltransferase From Rhodobacter Capsulatus
pdb|3NJR|B Chain B, Crystal Structure Of C-Terminal Domain Of Precorrin-6y
C5,15- Methyltransferase From Rhodobacter Capsulatus
Length = 204
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 37/77 (48%)
Query: 169 DGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 228
DG + +P + A + +++ D G G ++++ + I+I+ ++ Q
Sbjct: 35 DGQITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQ 94
Query: 229 HNASVYGVSHKIQFIQG 245
N YG+S +++ +QG
Sbjct: 95 KNIDTYGLSPRMRAVQG 111
>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|B Chain B, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|C Chain C, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|D Chain D, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|E Chain E, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|F Chain F, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|G Chain G, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|H Chain H, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
Length = 342
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 192 VVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQ 228
V I G G G +Q+A A+ V +IDID AKL LA+
Sbjct: 174 VAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR 211
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 185 SRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 244
+ C+A V+D G G + F+ Q+ I +D + +A A GV + ++F Q
Sbjct: 17 AECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEXVEVASSFAQEKGVEN-VRFQQ 75
Query: 245 G 245
G
Sbjct: 76 G 76
>pdb|2E7I|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7I|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
Length = 371
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 132 SRYDEGILMDEESWYS--VTPEKVAQHIASRCKAS--DVVIDGWYSVTPEKVAQHIASRC 187
++ D ++MDE YS V E+ +IA K D Y++TPE AQ I
Sbjct: 90 AKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPD------YAITPENFAQTIEETK 143
Query: 188 KASDVVI------DGFCGCGGNTIQFAAVCQK 213
K +VV+ DG G + + A VC +
Sbjct: 144 KRGEVVLALITYPDGNYGNLPDVKKIAKVCSE 175
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 146 YSVTPEKVAQHIASRCKASDVVI------DGWYSVTPEKVAQHIASRCKASDV 192
Y++TPE AQ I K +VV+ DG Y P+ + IA C DV
Sbjct: 128 YAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD--VKKIAKVCSEYDV 178
>pdb|2XPN|A Chain A, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From
Encephalitozoon Cuniculi, Form I
pdb|2XPO|A Chain A, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From
Encephalitozoon Cuniculi, Form Ii
pdb|2XPO|C Chain C, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From
Encephalitozoon Cuniculi, Form Ii
pdb|2XPP|A Chain A, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From
Encephalitozoon Cuniculi, Form Iii
Length = 145
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 105 GDLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKAS 164
G +ENV EEI ++ ++K Q+ L DEGIL + + W P+K +I R +
Sbjct: 36 GKIENV-EEI-SDILMSKALQESLL-----DEGILDEIKGWLEPLPDKSMPNIKIRKRLL 88
Query: 165 DVV 167
DV+
Sbjct: 89 DVL 91
>pdb|2XPL|A Chain A, Crystal Structure Of Iws1(Spn1) Conserved Domain From
Encephalitozoon Cuniculi
pdb|2XPL|B Chain B, Crystal Structure Of Iws1(Spn1) Conserved Domain From
Encephalitozoon Cuniculi
Length = 148
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 105 GDLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKAS 164
G +ENV EEI ++ ++K Q+ L DEGIL + + W P+K +I R +
Sbjct: 39 GKIENV-EEI-SDILMSKALQESLL-----DEGILDEIKGWLEPLPDKSMPNIKIRKRLL 91
Query: 165 DVV 167
DV+
Sbjct: 92 DVL 94
>pdb|2GYA|C Chain C, Structure Of The 50s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYC|C Chain C, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 198
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 4 KKVLEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQDILI 46
K +L ++ QD LI + ++ K+L L+D+A +D+LI
Sbjct: 106 KSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLI 148
>pdb|1P85|C Chain C, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
State Of E. Coli 70s Ribosome
pdb|1P86|C Chain C, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2AW4|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2AWB|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes And Is
Described In Remark 400.
pdb|1VS6|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|1VS8|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2T|E Chain E, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2V|E Chain E, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2J28|E Chain E, Model Of E. Coli Srp Bound To 70s Rncs
pdb|2QOV|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The First 70s Ribosome.
The Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|2QOX|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The Second 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QOZ|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
First 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QP1|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QAM|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The First 70s Ribosome, With
Neomycin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QAO|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBA|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The First 70s Ribosome, With
Gentamicin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBC|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBE|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
First 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QBG|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QBI|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The First 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2QBK|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The Second 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4L|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The First 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
pdb|2Z4N|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The Second 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
pdb|2VHM|E Chain E, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 1 Of 4)
pdb|2VHN|E Chain E, Structure Of Pdf Binding Helix In Complex With The
Ribosome. (Part 2 Of 4)
pdb|2RDO|E Chain E, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
pdb|3DF2|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 50s Subunit Of The First 70s Ribosome. The
Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|3DF4|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 50s Subunit Of The Second 70s Ribosome. The
Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|3BBX|E Chain E, The Hsp15 Protein Fitted Into The Low Resolution Cryo-Em
Map 50s.Nc-Trna.Hsp15 Complex
pdb|3FIK|E Chain E, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 50s Subunit.
pdb|3E1B|1 Chain 1, Structure Of The 50s Subunit Of E. Coli Ribosome In
Pre-Accommodation State
pdb|3E1D|1 Chain 1, Structure Of The 50s Subunit Of E. Coli Ribosome In
Post-Accommodation State
pdb|3I1N|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1P|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1R|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1T|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I20|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I22|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KCR|E Chain E, Ribosome-Secy Complex. This Entry 3kcr Contains 50s
Ribosomal Subnit. The 30s Ribosomal Subunit Can Be Found
In Pdb Entry 3kc4
pdb|2WWQ|E Chain E, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 50s, The P-Site
Trna And The Tnac Leader Peptide (Part 2 Of 2).
pdb|1VT2|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3ORB|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The First
70s Ribosome Bound To Cem-101.
pdb|3OFQ|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OFR|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
First 70s Ribosome With Erthromycin Bound.
pdb|3OFC|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The First 70s Ribosome With Chloramphenicol Bound.
pdb|3OFD|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The Second 70s Ribosome.
pdb|3OFZ|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
First 70s Ribosome Bound To Clindamycin.
pdb|3OG0|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OAS|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OAT|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of The
First 70s Ribosome With Telithromycin Bound.
pdb|3IZT|F Chain F, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A
Near-Cognate Codon.
pdb|3IZU|F Chain F, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A Cognate
Codon
pdb|3J01|E Chain E, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|3R8S|E Chain E, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3R8T|E Chain E, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3SGF|E Chain E, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOS|E Chain E, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|3J0T|F Chain F, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0W|F Chain F, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0Y|F Chain F, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J11|F Chain F, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 3 Of The Six
Classes)
pdb|3J12|F Chain F, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J14|F Chain F, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 6 Of The Six
Classes)
pdb|3J19|E Chain E, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(50s Subunit)
pdb|4GAR|E Chain E, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAU|E Chain E, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 201
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 4 KKVLEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQDILI 46
K +L ++ QD LI + ++ K+L L+D+A +D+LI
Sbjct: 106 KSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLI 148
>pdb|1Z90|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|1Z90|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
Length = 469
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 294 ARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQD 338
++G + G+Y P DVF +SGK +F+S +F + D
Sbjct: 178 SKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSD 222
>pdb|2ICX|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICX|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICY|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
pdb|2ICY|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
Length = 469
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 294 ARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQD 338
++G + G+Y P DVF +SGK +F+S +F + D
Sbjct: 178 SKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSD 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,222,995
Number of Sequences: 62578
Number of extensions: 427739
Number of successful extensions: 983
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 948
Number of HSP's gapped (non-prelim): 45
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)