Query psy15742
Match_columns 342
No_of_seqs 432 out of 3392
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 20:13:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2730|consensus 99.9 1.2E-26 2.7E-31 196.9 8.0 189 109-322 37-231 (263)
2 PRK03522 rumB 23S rRNA methylu 99.9 2.8E-22 6E-27 187.4 15.3 132 189-342 173-309 (315)
3 PRK13168 rumA 23S rRNA m(5)U19 99.9 1.5E-22 3.3E-27 197.6 13.9 152 170-342 273-437 (443)
4 TIGR02085 meth_trns_rumB 23S r 99.9 2.9E-22 6.2E-27 191.2 14.6 153 169-342 208-369 (374)
5 PF09445 Methyltransf_15: RNA 99.9 2.4E-22 5.3E-27 167.6 11.7 124 192-317 2-131 (163)
6 COG2265 TrmA SAM-dependent met 99.9 6.3E-22 1.4E-26 190.3 13.6 154 170-341 269-432 (432)
7 PRK05031 tRNA (uracil-5-)-meth 99.9 9.2E-22 2E-26 186.9 13.9 153 169-342 182-356 (362)
8 PF05958 tRNA_U5-meth_tr: tRNA 99.9 6.7E-22 1.5E-26 187.0 11.7 152 169-342 172-346 (352)
9 TIGR02143 trmA_only tRNA (urac 99.9 2.1E-21 4.5E-26 183.8 14.2 152 169-342 173-347 (353)
10 TIGR00479 rumA 23S rRNA (uraci 99.8 5.7E-20 1.2E-24 179.1 15.9 153 169-340 267-431 (431)
11 COG1092 Predicted SAM-dependen 99.8 2.3E-18 5E-23 162.7 10.4 117 190-312 218-341 (393)
12 PF10672 Methyltrans_SAM: S-ad 99.7 7.1E-17 1.5E-21 147.1 5.7 137 190-335 124-273 (286)
13 PRK11783 rlmL 23S rRNA m(2)G24 99.7 1E-15 2.2E-20 157.1 13.8 145 190-339 539-693 (702)
14 KOG2187|consensus 99.7 5.5E-16 1.2E-20 147.5 10.8 154 170-341 359-534 (534)
15 PF01170 UPF0020: Putative RNA 99.6 6.2E-15 1.3E-19 126.6 13.7 125 187-318 26-162 (179)
16 COG4123 Predicted O-methyltran 99.6 4.5E-15 9.7E-20 131.6 11.8 141 190-331 45-196 (248)
17 PF13659 Methyltransf_26: Meth 99.6 1.7E-15 3.6E-20 120.8 8.0 79 190-268 1-83 (117)
18 PF05175 MTS: Methyltransferas 99.6 9.4E-15 2E-19 124.6 12.9 79 189-268 31-111 (170)
19 COG0116 Predicted N6-adenine-s 99.6 5.1E-15 1.1E-19 138.1 10.0 151 136-312 157-349 (381)
20 PRK14966 unknown domain/N5-glu 99.6 3E-14 6.5E-19 135.4 15.0 93 175-269 237-333 (423)
21 COG2230 Cfa Cyclopropane fatty 99.6 8.3E-15 1.8E-19 132.2 10.5 137 103-270 13-152 (283)
22 COG2263 Predicted RNA methylas 99.6 1.2E-14 2.6E-19 122.1 10.7 75 190-268 46-121 (198)
23 PRK15128 23S rRNA m(5)C1962 me 99.6 1.3E-14 2.7E-19 139.1 12.0 142 189-336 220-379 (396)
24 PHA03412 putative methyltransf 99.6 1.8E-14 3.8E-19 126.8 11.7 113 190-312 50-167 (241)
25 COG2890 HemK Methylase of poly 99.6 1.2E-14 2.7E-19 133.2 11.1 91 177-269 97-190 (280)
26 TIGR00536 hemK_fam HemK family 99.6 8.2E-14 1.8E-18 128.5 15.7 80 191-270 116-197 (284)
27 TIGR03533 L3_gln_methyl protei 99.5 5.6E-14 1.2E-18 129.4 12.8 81 189-269 121-203 (284)
28 TIGR01177 conserved hypothetic 99.5 1.1E-13 2.5E-18 130.2 14.3 130 187-326 180-312 (329)
29 PRK01544 bifunctional N5-gluta 99.5 1.4E-13 3.1E-18 136.1 15.3 81 190-270 139-221 (506)
30 PRK11805 N5-glutamine S-adenos 99.5 2E-13 4.3E-18 127.0 14.8 79 191-269 135-215 (307)
31 PRK10909 rsmD 16S rRNA m(2)G96 99.5 8E-14 1.7E-18 121.3 11.5 78 189-267 53-133 (199)
32 PF02353 CMAS: Mycolic acid cy 99.5 5.1E-14 1.1E-18 128.5 9.5 132 105-267 5-139 (273)
33 COG1041 Predicted DNA modifica 99.5 7.8E-14 1.7E-18 128.5 10.0 135 186-329 194-330 (347)
34 PF12847 Methyltransf_18: Meth 99.5 3.4E-13 7.3E-18 106.5 11.0 75 189-263 1-78 (112)
35 TIGR00537 hemK_rel_arch HemK-r 99.5 1.5E-12 3.2E-17 112.0 15.9 142 189-333 19-169 (179)
36 TIGR03704 PrmC_rel_meth putati 99.5 7.1E-13 1.5E-17 119.9 14.5 76 190-269 87-167 (251)
37 COG2264 PrmA Ribosomal protein 99.5 2E-13 4.3E-18 124.3 10.3 142 169-328 142-287 (300)
38 TIGR00095 RNA methyltransferas 99.5 3E-13 6.5E-18 117.1 10.7 80 189-268 49-134 (189)
39 PRK14967 putative methyltransf 99.5 5.2E-13 1.1E-17 118.9 12.1 81 187-269 34-115 (223)
40 PRK15001 SAM-dependent 23S rib 99.4 5.6E-13 1.2E-17 126.5 11.3 80 190-269 229-312 (378)
41 PF03602 Cons_hypoth95: Conser 99.4 3.8E-13 8.3E-18 115.7 9.0 81 189-269 42-128 (183)
42 PHA03411 putative methyltransf 99.4 6.1E-13 1.3E-17 119.8 10.4 75 190-270 65-141 (279)
43 smart00650 rADc Ribosomal RNA 99.4 2.4E-12 5.2E-17 109.6 13.6 78 188-268 12-90 (169)
44 KOG2904|consensus 99.4 1.3E-12 2.8E-17 115.4 11.6 118 176-293 130-263 (328)
45 PRK04338 N(2),N(2)-dimethylgua 99.4 5.8E-13 1.3E-17 127.1 9.6 124 190-338 58-184 (382)
46 TIGR03534 RF_mod_PrmC protein- 99.4 2E-12 4.3E-17 116.9 12.3 79 190-269 88-168 (251)
47 COG2813 RsmC 16S RNA G1207 met 99.4 1.5E-12 3.3E-17 117.9 10.8 77 190-268 159-237 (300)
48 KOG3420|consensus 99.4 6.2E-13 1.3E-17 106.6 7.1 79 189-269 48-128 (185)
49 PF06325 PrmA: Ribosomal prote 99.4 1.1E-12 2.3E-17 120.6 9.2 93 169-264 141-234 (295)
50 PRK14968 putative methyltransf 99.4 1.3E-11 2.8E-16 106.5 15.6 145 188-332 22-176 (188)
51 TIGR00138 gidB 16S rRNA methyl 99.4 5.1E-12 1.1E-16 108.7 12.5 73 190-263 43-117 (181)
52 PTZ00338 dimethyladenosine tra 99.4 1.4E-11 3.1E-16 113.6 15.7 81 188-269 35-115 (294)
53 COG2227 UbiG 2-polyprenyl-3-me 99.4 1.1E-12 2.3E-17 114.8 7.7 100 189-305 59-159 (243)
54 PRK09489 rsmC 16S ribosomal RN 99.4 1.4E-11 3.1E-16 116.1 15.4 75 190-267 197-273 (342)
55 COG0742 N6-adenine-specific me 99.4 6.4E-12 1.4E-16 106.7 11.3 78 190-267 44-126 (187)
56 PRK11727 23S rRNA mA1618 methy 99.4 1.2E-11 2.5E-16 114.9 13.9 115 155-269 61-203 (321)
57 PF13847 Methyltransf_31: Meth 99.4 5.3E-12 1.1E-16 105.5 10.4 79 189-268 3-86 (152)
58 TIGR00477 tehB tellurite resis 99.4 8.9E-12 1.9E-16 108.6 12.2 133 190-328 31-168 (195)
59 PRK11783 rlmL 23S rRNA m(2)G24 99.4 1.6E-12 3.4E-17 133.6 8.7 80 189-268 190-316 (702)
60 PRK09328 N5-glutamine S-adenos 99.4 7.4E-12 1.6E-16 114.8 12.3 80 189-269 108-189 (275)
61 PRK11207 tellurite resistance 99.4 8.8E-12 1.9E-16 108.8 12.0 79 189-268 30-108 (197)
62 PRK00107 gidB 16S rRNA methylt 99.3 1.6E-11 3.4E-16 106.0 13.3 77 185-262 41-119 (187)
63 TIGR00446 nop2p NOL1/NOP2/sun 99.3 8.4E-12 1.8E-16 113.9 12.2 85 187-272 69-157 (264)
64 PRK14904 16S rRNA methyltransf 99.3 1.5E-11 3.2E-16 120.4 13.0 85 187-272 248-335 (445)
65 PF02475 Met_10: Met-10+ like- 99.3 1E-11 2.2E-16 107.9 9.8 84 186-269 98-183 (200)
66 PLN02672 methionine S-methyltr 99.3 2.8E-11 6E-16 127.2 14.7 81 190-270 119-218 (1082)
67 PRK00274 ksgA 16S ribosomal RN 99.3 4.2E-11 9E-16 109.8 14.0 77 188-268 41-118 (272)
68 KOG3926|consensus 99.3 4.1E-12 8.8E-17 111.3 6.5 61 4-64 94-154 (332)
69 COG2226 UbiE Methylase involve 99.3 5E-12 1.1E-16 112.2 7.2 79 189-270 51-132 (238)
70 TIGR00406 prmA ribosomal prote 99.3 4E-11 8.7E-16 110.8 13.5 92 172-264 142-234 (288)
71 PRK14896 ksgA 16S ribosomal RN 99.3 7.6E-11 1.6E-15 107.2 15.1 77 188-268 28-104 (258)
72 PRK14903 16S rRNA methyltransf 99.3 2.9E-11 6.3E-16 117.6 12.3 86 186-272 234-324 (431)
73 TIGR03840 TMPT_Se_Te thiopurin 99.3 5.7E-11 1.2E-15 104.8 12.5 143 188-333 33-191 (213)
74 TIGR00080 pimt protein-L-isoas 99.3 3.4E-11 7.3E-16 106.6 11.0 79 187-266 75-157 (215)
75 PRK11705 cyclopropane fatty ac 99.3 4.3E-11 9.4E-16 114.6 12.5 153 101-291 107-265 (383)
76 PRK15451 tRNA cmo(5)U34 methyl 99.3 3.2E-11 7E-16 109.0 10.4 84 184-268 51-138 (247)
77 PRK11036 putative S-adenosyl-L 99.3 4.1E-11 8.8E-16 108.9 11.1 81 188-268 43-125 (255)
78 PLN02396 hexaprenyldihydroxybe 99.3 2.2E-11 4.8E-16 113.6 9.3 147 189-337 131-297 (322)
79 PLN02244 tocopherol O-methyltr 99.2 3.6E-11 7.8E-16 113.7 10.9 80 188-267 117-198 (340)
80 KOG1271|consensus 99.2 1.9E-10 4.2E-15 95.9 13.0 136 190-333 68-209 (227)
81 PRK14901 16S rRNA methyltransf 99.2 8.9E-11 1.9E-15 114.6 12.4 85 187-272 250-342 (434)
82 PRK10901 16S rRNA methyltransf 99.2 1E-10 2.2E-15 113.9 12.7 81 187-269 242-327 (427)
83 PRK00517 prmA ribosomal protei 99.2 1.2E-10 2.5E-15 105.6 12.2 85 173-264 103-188 (250)
84 TIGR00563 rsmB ribosomal RNA s 99.2 1.2E-10 2.5E-15 113.6 12.9 90 187-276 236-330 (426)
85 PRK13944 protein-L-isoaspartat 99.2 2.7E-10 5.9E-15 100.0 13.8 79 188-266 71-153 (205)
86 PF03848 TehB: Tellurite resis 99.2 1.2E-10 2.5E-15 100.3 10.5 73 190-264 31-103 (192)
87 PRK12335 tellurite resistance 99.2 9.4E-11 2E-15 108.3 10.5 77 190-268 121-197 (287)
88 COG2242 CobL Precorrin-6B meth 99.2 2.9E-10 6.4E-15 96.2 11.7 75 187-262 32-109 (187)
89 PF01209 Ubie_methyltran: ubiE 99.2 1.2E-10 2.6E-15 104.1 9.8 74 188-262 46-123 (233)
90 PRK14902 16S rRNA methyltransf 99.2 2E-10 4.3E-15 112.5 12.1 83 187-270 248-335 (444)
91 TIGR02021 BchM-ChlM magnesium 99.2 2.7E-10 5.8E-15 101.1 11.2 73 188-262 54-126 (219)
92 TIGR02752 MenG_heptapren 2-hep 99.1 4.4E-10 9.5E-15 100.4 11.9 80 188-268 44-127 (231)
93 PRK08287 cobalt-precorrin-6Y C 99.1 9.7E-10 2.1E-14 95.1 13.7 75 188-264 30-106 (187)
94 TIGR00740 methyltransferase, p 99.1 5.4E-10 1.2E-14 100.5 11.4 80 187-267 51-134 (239)
95 PRK13942 protein-L-isoaspartat 99.1 7.3E-10 1.6E-14 97.8 11.9 76 187-263 74-153 (212)
96 TIGR00755 ksgA dimethyladenosi 99.1 1.4E-09 3E-14 98.7 14.0 77 188-268 28-107 (253)
97 TIGR03587 Pse_Me-ase pseudamin 99.1 3.5E-10 7.5E-15 99.2 9.7 79 184-268 38-118 (204)
98 PRK00121 trmB tRNA (guanine-N( 99.1 3.3E-10 7.1E-15 99.3 9.4 75 189-264 40-120 (202)
99 TIGR02469 CbiT precorrin-6Y C5 99.1 1.9E-09 4.2E-14 86.2 13.1 76 188-264 18-97 (124)
100 PF13649 Methyltransf_25: Meth 99.1 2.1E-10 4.5E-15 89.0 7.1 67 193-261 1-73 (101)
101 PRK00377 cbiT cobalt-precorrin 99.1 8.2E-10 1.8E-14 96.5 11.7 77 187-263 38-119 (198)
102 PF02384 N6_Mtase: N-6 DNA Met 99.1 2.7E-10 5.8E-15 106.5 8.9 82 189-270 46-140 (311)
103 COG0030 KsgA Dimethyladenosine 99.1 2.1E-09 4.5E-14 96.4 13.7 79 188-269 29-109 (259)
104 PRK13255 thiopurine S-methyltr 99.1 9.3E-10 2E-14 97.4 11.4 139 188-332 36-193 (218)
105 PLN02233 ubiquinone biosynthes 99.1 3.7E-10 7.9E-15 102.9 9.0 80 188-267 72-157 (261)
106 PRK10258 biotin biosynthesis p 99.1 6.4E-10 1.4E-14 100.7 10.6 74 189-268 42-116 (251)
107 PRK00312 pcm protein-L-isoaspa 99.1 1.4E-09 3.1E-14 96.0 12.2 78 188-266 77-155 (212)
108 PLN02781 Probable caffeoyl-CoA 99.1 7.1E-10 1.5E-14 99.3 10.3 86 178-264 58-153 (234)
109 PRK14103 trans-aconitate 2-met 99.1 5E-10 1.1E-14 101.7 9.2 73 188-268 28-102 (255)
110 COG2520 Predicted methyltransf 99.1 4.8E-10 1E-14 104.3 9.1 84 183-266 182-267 (341)
111 PRK01683 trans-aconitate 2-met 99.1 7.7E-10 1.7E-14 100.6 10.3 75 188-268 30-106 (258)
112 COG4106 Tam Trans-aconitate me 99.1 5E-10 1.1E-14 96.0 8.3 100 190-310 31-134 (257)
113 PF07021 MetW: Methionine bios 99.1 7.9E-10 1.7E-14 94.1 9.5 74 181-262 5-82 (193)
114 PLN02476 O-methyltransferase 99.0 4.6E-10 1E-14 102.1 7.8 88 177-265 107-204 (278)
115 TIGR00091 tRNA (guanine-N(7)-) 99.0 7.5E-10 1.6E-14 96.4 8.8 110 190-307 17-132 (194)
116 PLN02585 magnesium protoporphy 99.0 1.4E-09 3E-14 101.3 10.9 74 189-264 144-221 (315)
117 PTZ00098 phosphoethanolamine N 99.0 8E-10 1.7E-14 100.8 8.8 78 187-267 50-129 (263)
118 COG2518 Pcm Protein-L-isoaspar 99.0 5.2E-09 1.1E-13 90.5 13.0 75 187-262 70-145 (209)
119 KOG1270|consensus 99.0 1.6E-10 3.5E-15 101.9 2.9 76 190-267 90-170 (282)
120 PRK11873 arsM arsenite S-adeno 99.0 3.6E-09 7.8E-14 97.0 11.9 80 187-267 75-158 (272)
121 PLN02336 phosphoethanolamine N 99.0 1.1E-09 2.5E-14 108.2 9.0 80 187-268 264-345 (475)
122 KOG3191|consensus 99.0 3.1E-09 6.7E-14 88.8 9.9 81 190-272 44-127 (209)
123 PRK05785 hypothetical protein; 99.0 2.1E-09 4.4E-14 95.9 9.6 70 188-266 50-121 (226)
124 smart00828 PKS_MT Methyltransf 99.0 7.8E-10 1.7E-14 98.3 6.9 75 192-266 2-78 (224)
125 PRK07580 Mg-protoporphyrin IX 99.0 3.4E-09 7.4E-14 94.5 10.7 76 188-265 62-137 (230)
126 PRK07402 precorrin-6B methylas 99.0 7.3E-09 1.6E-13 90.3 11.8 75 188-263 39-117 (196)
127 PRK10742 putative methyltransf 99.0 3.6E-09 7.7E-14 94.0 9.7 82 188-269 85-178 (250)
128 PF08241 Methyltransf_11: Meth 99.0 2E-09 4.4E-14 81.6 7.1 69 194-266 1-71 (95)
129 PRK14121 tRNA (guanine-N(7)-)- 99.0 4.5E-09 9.8E-14 99.7 10.8 74 190-264 123-201 (390)
130 PF01596 Methyltransf_3: O-met 98.9 3E-09 6.4E-14 93.1 8.7 75 190-264 46-130 (205)
131 PRK04457 spermidine synthase; 98.9 8.4E-09 1.8E-13 94.0 11.9 107 188-305 65-175 (262)
132 PRK00811 spermidine synthase; 98.9 8.1E-09 1.8E-13 95.1 11.1 76 188-263 75-158 (283)
133 COG2519 GCD14 tRNA(1-methylade 98.9 4.8E-09 1E-13 92.7 9.0 78 187-264 92-172 (256)
134 PRK15068 tRNA mo(5)U34 methylt 98.9 3.6E-09 7.8E-14 99.2 8.2 102 189-292 122-225 (322)
135 PRK04266 fibrillarin; Provisio 98.9 2.5E-08 5.5E-13 88.7 12.9 75 187-264 70-150 (226)
136 PF01135 PCMT: Protein-L-isoas 98.9 1E-08 2.3E-13 89.9 10.3 78 187-265 70-151 (209)
137 PRK06922 hypothetical protein; 98.9 5E-09 1.1E-13 104.5 9.1 77 189-267 418-499 (677)
138 PRK11933 yebU rRNA (cytosine-C 98.9 1.6E-08 3.4E-13 98.9 12.5 86 186-272 110-200 (470)
139 TIGR02081 metW methionine bios 98.9 1.1E-08 2.3E-13 89.1 10.0 80 182-269 6-89 (194)
140 PRK13943 protein-L-isoaspartat 98.9 1.5E-08 3.2E-13 94.7 11.2 74 188-262 79-156 (322)
141 PF05401 NodS: Nodulation prot 98.9 5.2E-09 1.1E-13 89.4 7.2 70 191-263 45-114 (201)
142 TIGR00308 TRM1 tRNA(guanine-26 98.9 1.7E-08 3.6E-13 96.2 11.0 74 191-266 46-124 (374)
143 TIGR02987 met_A_Alw26 type II 98.9 1E-08 2.2E-13 102.6 9.9 80 190-270 32-127 (524)
144 TIGR01983 UbiG ubiquinone bios 98.8 1.3E-08 2.8E-13 90.4 9.4 77 190-267 46-124 (224)
145 KOG2671|consensus 98.8 2.3E-09 4.9E-14 97.7 4.3 85 185-269 204-298 (421)
146 PRK11188 rrmJ 23S rRNA methylt 98.8 2.2E-08 4.8E-13 88.2 10.5 125 187-328 49-188 (209)
147 PF05724 TPMT: Thiopurine S-me 98.8 2.1E-08 4.5E-13 88.7 10.0 145 188-335 36-196 (218)
148 PRK00216 ubiE ubiquinone/menaq 98.8 1.1E-08 2.5E-13 91.4 8.3 75 189-263 51-129 (239)
149 PLN03075 nicotianamine synthas 98.8 4.2E-08 9E-13 89.9 12.0 77 189-266 123-205 (296)
150 TIGR00452 methyltransferase, p 98.8 2.8E-08 6E-13 92.5 10.7 101 189-291 121-223 (314)
151 PRK01581 speE spermidine synth 98.8 4.2E-08 9E-13 92.0 11.2 119 177-305 138-266 (374)
152 PRK11088 rrmA 23S rRNA methylt 98.8 2E-08 4.3E-13 92.1 8.9 80 177-262 72-158 (272)
153 COG4122 Predicted O-methyltran 98.8 3E-08 6.4E-13 87.0 9.5 84 179-263 50-140 (219)
154 PF08704 GCD14: tRNA methyltra 98.8 6.2E-08 1.4E-12 86.9 11.8 78 187-264 38-122 (247)
155 PRK06202 hypothetical protein; 98.8 2E-08 4.3E-13 89.9 8.7 78 188-269 59-143 (232)
156 PLN02490 MPBQ/MSBQ methyltrans 98.8 5.4E-08 1.2E-12 91.4 11.5 76 188-267 112-190 (340)
157 TIGR03438 probable methyltrans 98.8 7.3E-08 1.6E-12 89.7 12.2 70 181-250 55-127 (301)
158 KOG1540|consensus 98.8 2E-08 4.2E-13 88.4 7.7 82 189-272 100-192 (296)
159 PRK04148 hypothetical protein; 98.8 5.1E-08 1.1E-12 78.8 9.5 67 190-264 17-87 (134)
160 PLN02589 caffeoyl-CoA O-methyl 98.8 2.9E-08 6.3E-13 89.2 8.9 86 178-264 69-165 (247)
161 PRK03612 spermidine synthase; 98.8 4.2E-08 9.2E-13 97.8 10.8 80 187-266 295-384 (521)
162 KOG0820|consensus 98.8 6.3E-08 1.4E-12 86.0 10.4 82 187-269 56-137 (315)
163 PRK05134 bifunctional 3-demeth 98.8 5.1E-08 1.1E-12 87.2 10.1 78 189-268 48-127 (233)
164 cd02440 AdoMet_MTases S-adenos 98.8 4.1E-08 8.9E-13 74.6 8.1 75 192-267 1-78 (107)
165 TIGR02072 BioC biotin biosynth 98.7 6.4E-08 1.4E-12 86.4 10.5 74 190-268 35-111 (240)
166 COG2521 Predicted archaeal met 98.7 1.6E-08 3.5E-13 87.7 5.7 82 187-268 132-218 (287)
167 PRK13256 thiopurine S-methyltr 98.7 3E-07 6.5E-12 81.4 13.8 138 189-331 43-199 (226)
168 PF05971 Methyltransf_10: Prot 98.7 6E-08 1.3E-12 88.8 9.4 80 190-269 103-191 (299)
169 PRK08317 hypothetical protein; 98.7 4.2E-08 9.2E-13 87.5 8.3 80 187-268 17-100 (241)
170 COG0144 Sun tRNA and rRNA cyto 98.7 1.7E-07 3.7E-12 89.0 12.6 93 184-277 151-251 (355)
171 TIGR00438 rrmJ cell division p 98.7 1.2E-07 2.6E-12 82.0 10.0 65 187-263 30-106 (188)
172 PF08242 Methyltransf_12: Meth 98.7 1.2E-09 2.6E-14 84.2 -2.4 74 194-268 1-79 (99)
173 PLN02336 phosphoethanolamine N 98.7 7.1E-08 1.5E-12 95.5 9.3 78 189-269 37-117 (475)
174 PF13489 Methyltransf_23: Meth 98.7 9E-08 1.9E-12 80.0 8.3 74 183-267 16-90 (161)
175 TIGR02716 C20_methyl_CrtF C-20 98.6 1.4E-07 3.1E-12 87.9 9.9 74 187-262 147-222 (306)
176 PLN02366 spermidine synthase 98.6 2.1E-07 4.5E-12 86.5 10.5 78 187-264 89-174 (308)
177 KOG1499|consensus 98.6 1.1E-07 2.4E-12 87.6 8.5 73 189-262 60-134 (346)
178 COG0286 HsdM Type I restrictio 98.6 1.7E-07 3.8E-12 92.6 10.0 99 174-272 169-281 (489)
179 TIGR00417 speE spermidine synt 98.6 3.2E-07 6.9E-12 84.1 9.9 77 189-265 72-155 (270)
180 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 1.8E-07 3.8E-12 82.7 7.8 73 189-264 39-115 (223)
181 KOG1500|consensus 98.6 2.3E-07 5E-12 84.6 8.0 75 189-264 177-252 (517)
182 PRK00050 16S rRNA m(4)C1402 me 98.5 2E-07 4.4E-12 85.7 7.8 77 188-267 18-102 (296)
183 PF08003 Methyltransf_9: Prote 98.5 3.2E-07 6.9E-12 83.5 8.6 139 189-329 115-270 (315)
184 smart00138 MeTrc Methyltransfe 98.5 4.4E-07 9.5E-12 82.8 9.6 74 189-262 99-210 (264)
185 PF02390 Methyltransf_4: Putat 98.5 6E-07 1.3E-11 78.1 9.3 109 191-308 19-134 (195)
186 PF05185 PRMT5: PRMT5 arginine 98.5 6.9E-07 1.5E-11 87.1 10.6 75 190-264 187-267 (448)
187 PLN02823 spermine synthase 98.5 1.2E-06 2.5E-11 82.4 11.2 78 187-264 101-185 (336)
188 PTZ00146 fibrillarin; Provisio 98.5 7.5E-07 1.6E-11 81.5 9.2 75 187-264 130-211 (293)
189 PF00398 RrnaAD: Ribosomal RNA 98.5 6.6E-07 1.4E-11 81.6 8.5 76 189-267 30-109 (262)
190 COG4076 Predicted RNA methylas 98.4 2.6E-07 5.6E-12 77.7 5.1 69 191-261 34-102 (252)
191 PF10294 Methyltransf_16: Puta 98.4 8.9E-07 1.9E-11 75.6 8.4 77 188-265 44-130 (173)
192 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.4 8.2E-07 1.8E-11 81.8 8.5 90 187-277 83-178 (283)
193 KOG1541|consensus 98.4 6.2E-07 1.4E-11 77.4 6.8 66 190-261 51-118 (270)
194 KOG1663|consensus 98.3 3.5E-06 7.5E-11 73.5 9.4 85 178-263 63-157 (237)
195 KOG4300|consensus 98.3 1.9E-06 4.1E-11 73.8 6.8 70 191-261 78-151 (252)
196 COG0220 Predicted S-adenosylme 98.2 8.2E-06 1.8E-10 72.4 9.4 107 191-307 50-164 (227)
197 COG3897 Predicted methyltransf 98.2 2.5E-06 5.5E-11 72.4 5.4 70 189-262 79-149 (218)
198 KOG3010|consensus 98.2 7.5E-07 1.6E-11 78.0 1.9 92 190-281 34-126 (261)
199 PF11599 AviRa: RRNA methyltra 98.1 3.2E-05 7E-10 66.7 11.0 80 190-269 52-182 (246)
200 KOG2915|consensus 98.1 2.4E-05 5.2E-10 69.8 10.5 78 187-264 103-186 (314)
201 PF01564 Spermine_synth: Sperm 98.1 1.4E-05 3E-10 72.2 9.3 108 187-305 74-189 (246)
202 COG2384 Predicted SAM-dependen 98.1 5.3E-05 1.2E-09 65.9 11.9 80 182-261 9-91 (226)
203 KOG1661|consensus 98.1 1.7E-05 3.7E-10 68.2 8.6 85 178-262 71-169 (237)
204 PF04445 SAM_MT: Putative SAM- 98.1 1.2E-05 2.7E-10 71.1 7.9 79 191-269 77-165 (234)
205 PF13679 Methyltransf_32: Meth 98.1 2E-05 4.2E-10 65.0 8.2 74 188-261 24-105 (141)
206 TIGR00478 tly hemolysin TlyA f 98.0 8.1E-06 1.8E-10 72.6 6.0 38 189-226 75-113 (228)
207 PF04816 DUF633: Family of unk 98.0 1.9E-05 4.1E-10 69.1 8.1 69 193-261 1-72 (205)
208 KOG2899|consensus 98.0 2.1E-05 4.5E-10 69.1 7.8 45 190-234 59-105 (288)
209 PF08123 DOT1: Histone methyla 98.0 3E-05 6.5E-10 67.9 8.7 77 187-263 40-130 (205)
210 COG4976 Predicted methyltransf 98.0 5.7E-06 1.2E-10 72.0 3.5 131 191-332 127-268 (287)
211 COG3129 Predicted SAM-dependen 98.0 1.1E-05 2.5E-10 70.1 5.3 80 189-268 78-166 (292)
212 PF03291 Pox_MCEL: mRNA cappin 97.9 2.8E-05 6.2E-10 73.0 7.9 78 189-266 62-156 (331)
213 TIGR01444 fkbM_fam methyltrans 97.9 3.5E-05 7.5E-10 63.3 7.3 58 192-250 1-60 (143)
214 PRK01544 bifunctional N5-gluta 97.9 0.0001 2.3E-09 73.4 12.0 112 189-309 347-464 (506)
215 PRK11524 putative methyltransf 97.9 3.5E-05 7.7E-10 71.1 8.1 58 176-233 194-252 (284)
216 PF01861 DUF43: Protein of unk 97.9 8.8E-05 1.9E-09 65.6 10.1 77 189-268 44-125 (243)
217 PRK11760 putative 23S rRNA C24 97.9 3.5E-05 7.6E-10 71.7 7.7 70 187-264 209-279 (357)
218 PF01555 N6_N4_Mtase: DNA meth 97.9 5.3E-05 1.2E-09 66.9 8.0 54 176-229 177-231 (231)
219 TIGR00006 S-adenosyl-methyltra 97.8 0.00011 2.3E-09 68.0 9.8 74 188-263 19-100 (305)
220 cd00315 Cyt_C5_DNA_methylase C 97.8 4.7E-05 1E-09 69.9 7.3 74 192-272 2-79 (275)
221 PF02005 TRM: N2,N2-dimethylgu 97.8 6.9E-05 1.5E-09 71.7 8.1 79 189-268 49-133 (377)
222 PRK13699 putative methylase; P 97.8 0.0001 2.2E-09 65.7 8.2 59 176-234 149-208 (227)
223 PRK00536 speE spermidine synth 97.7 0.00048 1E-08 62.5 11.4 76 187-264 70-148 (262)
224 PF02527 GidB: rRNA small subu 97.7 0.0002 4.4E-09 61.6 8.3 69 192-261 51-121 (184)
225 COG4262 Predicted spermidine s 97.7 0.00015 3.2E-09 67.4 7.4 109 187-305 287-405 (508)
226 KOG2078|consensus 97.6 3.6E-05 7.8E-10 72.6 3.1 68 184-251 244-312 (495)
227 PF00891 Methyltransf_2: O-met 97.6 0.00021 4.5E-09 64.3 7.9 64 188-261 99-164 (241)
228 COG3963 Phospholipid N-methylt 97.6 0.00027 5.8E-09 58.8 7.6 73 189-267 48-129 (194)
229 COG0421 SpeE Spermidine syntha 97.6 0.0003 6.5E-09 64.5 8.7 102 191-305 78-188 (282)
230 KOG1975|consensus 97.6 0.00014 3E-09 66.5 6.2 86 182-267 110-208 (389)
231 TIGR00497 hsdM type I restrict 97.6 0.00029 6.3E-09 70.3 9.1 93 175-267 199-305 (501)
232 COG0357 GidB Predicted S-adeno 97.5 0.0004 8.7E-09 61.0 7.7 71 190-261 68-141 (215)
233 KOG1122|consensus 97.5 0.00045 9.7E-09 65.4 8.4 85 187-272 239-329 (460)
234 PF07091 FmrO: Ribosomal RNA m 97.5 0.00042 9E-09 61.8 7.7 83 177-261 93-177 (251)
235 COG1867 TRM1 N2,N2-dimethylgua 97.4 0.00051 1.1E-08 64.2 7.8 77 190-268 53-133 (380)
236 PF00145 DNA_methylase: C-5 cy 97.3 0.00063 1.4E-08 63.6 7.4 102 192-304 2-108 (335)
237 PF01728 FtsJ: FtsJ-like methy 97.2 0.00036 7.8E-09 59.8 4.3 62 190-263 24-99 (181)
238 COG0293 FtsJ 23S rRNA methylas 97.2 0.0023 5E-08 55.5 9.2 134 187-337 43-191 (205)
239 KOG1227|consensus 97.2 0.00016 3.6E-09 65.4 1.9 73 189-261 194-268 (351)
240 KOG4058|consensus 97.2 0.0011 2.3E-08 54.1 6.2 77 174-251 56-135 (199)
241 TIGR00675 dcm DNA-methyltransf 97.2 0.0012 2.6E-08 61.9 7.3 73 193-272 1-76 (315)
242 PF06080 DUF938: Protein of un 97.1 0.0022 4.8E-08 55.7 8.3 91 178-268 13-115 (204)
243 PHA01634 hypothetical protein 97.1 0.0024 5.2E-08 50.7 7.4 69 190-262 29-99 (156)
244 PF12147 Methyltransf_20: Puta 97.1 0.0052 1.1E-07 55.9 10.6 78 189-266 135-220 (311)
245 KOG2361|consensus 97.1 0.0014 3.1E-08 57.8 6.7 68 192-261 74-150 (264)
246 KOG2912|consensus 97.1 0.0031 6.6E-08 57.7 8.8 74 195-268 106-191 (419)
247 PF01795 Methyltransf_5: MraW 97.0 0.0031 6.7E-08 58.4 8.2 75 188-264 19-102 (310)
248 PF09243 Rsm22: Mitochondrial 96.9 0.0042 9E-08 57.0 8.5 73 190-262 34-109 (274)
249 COG0270 Dcm Site-specific DNA 96.9 0.0037 7.9E-08 59.0 8.2 77 190-272 3-84 (328)
250 PF05219 DREV: DREV methyltran 96.9 0.005 1.1E-07 55.2 8.1 85 167-261 66-157 (265)
251 COG0275 Predicted S-adenosylme 96.8 0.0078 1.7E-07 55.0 9.4 73 188-262 22-103 (314)
252 PF05148 Methyltransf_8: Hypot 96.8 0.0012 2.6E-08 57.3 3.9 92 188-297 71-163 (219)
253 PLN02232 ubiquinone biosynthes 96.7 0.0033 7.1E-08 52.9 5.2 48 215-262 1-51 (160)
254 PF13578 Methyltransf_24: Meth 96.6 0.0007 1.5E-08 52.6 0.9 70 194-264 1-78 (106)
255 KOG1501|consensus 96.6 0.0039 8.4E-08 59.4 5.9 58 192-249 69-127 (636)
256 PF05891 Methyltransf_PK: AdoM 96.6 0.0058 1.3E-07 53.5 6.2 132 190-335 56-207 (218)
257 TIGR03439 methyl_EasF probable 96.5 0.012 2.6E-07 55.0 8.6 70 181-250 68-144 (319)
258 KOG3045|consensus 96.5 0.0016 3.4E-08 58.0 2.2 82 170-271 162-244 (325)
259 COG1568 Predicted methyltransf 96.4 0.0073 1.6E-07 54.4 6.0 76 190-267 153-233 (354)
260 KOG2940|consensus 96.4 0.0066 1.4E-07 53.2 5.3 80 190-272 73-154 (325)
261 PF03059 NAS: Nicotianamine sy 96.3 0.013 2.8E-07 53.5 7.3 74 190-263 121-200 (276)
262 COG1189 Predicted rRNA methyla 96.3 0.0024 5.1E-08 56.4 2.2 74 189-268 79-157 (245)
263 PRK10458 DNA cytosine methylas 96.2 0.019 4.2E-07 56.4 8.3 80 190-272 88-186 (467)
264 PRK10611 chemotaxis methyltran 96.2 0.0081 1.8E-07 55.3 5.3 103 190-305 116-260 (287)
265 PF03141 Methyltransf_29: Puta 96.1 0.015 3.2E-07 56.8 7.0 95 191-305 119-217 (506)
266 KOG1253|consensus 96.1 0.0027 5.9E-08 61.4 2.0 80 188-268 108-195 (525)
267 PF01739 CheR: CheR methyltran 96.1 0.0091 2E-07 51.9 4.8 72 190-261 32-142 (196)
268 PF01269 Fibrillarin: Fibrilla 96.0 0.1 2.2E-06 45.9 10.9 75 187-264 71-152 (229)
269 COG0863 DNA modification methy 95.8 0.033 7.1E-07 51.5 7.8 57 178-234 211-267 (302)
270 COG0500 SmtA SAM-dependent met 95.8 0.066 1.4E-06 42.7 8.7 72 193-266 52-130 (257)
271 KOG2198|consensus 95.7 0.04 8.6E-07 51.8 7.6 91 178-269 144-250 (375)
272 KOG1269|consensus 95.1 0.053 1.1E-06 51.7 6.3 79 183-261 104-184 (364)
273 COG1352 CheR Methylase of chem 95.0 0.053 1.2E-06 49.4 5.9 103 190-305 97-239 (268)
274 PF10237 N6-adenineMlase: Prob 94.8 0.12 2.5E-06 43.5 7.0 85 171-266 6-97 (162)
275 KOG4589|consensus 94.8 0.072 1.6E-06 45.4 5.6 66 187-264 67-145 (232)
276 PF06962 rRNA_methylase: Putat 94.7 0.1 2.2E-06 42.6 6.3 55 213-267 1-58 (140)
277 KOG3115|consensus 94.7 0.045 9.7E-07 47.3 4.3 63 191-253 62-132 (249)
278 PF02086 MethyltransfD12: D12 94.7 0.059 1.3E-06 48.6 5.4 51 178-228 7-59 (260)
279 PF07757 AdoMet_MTase: Predict 94.4 0.034 7.5E-07 43.0 2.6 32 190-221 59-90 (112)
280 PF07942 N2227: N2227-like pro 94.2 0.24 5.2E-06 45.2 8.2 40 190-229 57-96 (270)
281 COG1889 NOP1 Fibrillarin-like 93.4 0.51 1.1E-05 40.9 8.2 75 187-264 74-154 (231)
282 PF04989 CmcI: Cephalosporin h 93.3 0.22 4.8E-06 43.4 6.0 73 190-264 33-120 (206)
283 KOG1709|consensus 92.9 0.77 1.7E-05 40.2 8.6 73 188-262 100-176 (271)
284 COG2961 ComJ Protein involved 92.8 0.6 1.3E-05 41.7 7.9 79 187-269 87-170 (279)
285 KOG3178|consensus 92.7 0.6 1.3E-05 43.8 8.3 65 190-261 178-242 (342)
286 KOG2360|consensus 92.7 0.28 6E-06 46.5 6.1 84 188-272 212-301 (413)
287 PF07279 DUF1442: Protein of u 92.6 1.1 2.3E-05 39.3 9.2 74 190-263 42-123 (218)
288 PF04378 RsmJ: Ribosomal RNA s 91.7 0.32 6.8E-06 43.7 5.1 73 194-269 62-139 (245)
289 KOG2651|consensus 91.5 0.57 1.2E-05 44.3 6.6 41 189-229 153-194 (476)
290 PRK11524 putative methyltransf 91.4 0.11 2.4E-06 47.9 1.9 30 238-267 7-39 (284)
291 COG2933 Predicted SAM-dependen 91.3 0.57 1.2E-05 42.2 6.1 71 185-263 207-278 (358)
292 KOG3987|consensus 91.2 0.059 1.3E-06 46.7 -0.1 64 166-229 85-152 (288)
293 PF04672 Methyltransf_19: S-ad 91.1 0.4 8.6E-06 43.6 5.1 59 191-250 70-133 (267)
294 PRK13699 putative methylase; P 90.4 0.13 2.9E-06 45.7 1.4 27 240-266 2-31 (227)
295 KOG2352|consensus 90.3 3 6.5E-05 40.9 10.5 78 183-262 41-121 (482)
296 KOG3924|consensus 90.0 0.52 1.1E-05 44.8 4.9 88 177-264 179-281 (419)
297 KOG2793|consensus 89.6 1.7 3.7E-05 39.1 7.8 77 190-267 87-175 (248)
298 COG0338 Dam Site-specific DNA 88.8 0.93 2E-05 41.5 5.6 91 219-317 142-237 (274)
299 PF03686 UPF0146: Uncharacteri 88.4 1.3 2.8E-05 35.5 5.4 71 182-265 7-81 (127)
300 KOG2920|consensus 88.2 0.46 9.9E-06 43.3 3.2 36 189-224 116-152 (282)
301 KOG0919|consensus 87.6 0.33 7.2E-06 43.0 1.8 82 190-277 3-91 (338)
302 PF10354 DUF2431: Domain of un 87.6 4.8 0.0001 33.9 8.9 133 198-338 3-163 (166)
303 PF02254 TrkA_N: TrkA-N domain 87.5 1.5 3.4E-05 34.0 5.6 60 197-264 3-71 (116)
304 KOG0822|consensus 87.5 1.2 2.6E-05 44.0 5.7 71 191-262 369-446 (649)
305 PF02636 Methyltransf_28: Puta 87.0 1.9 4.2E-05 38.8 6.6 43 191-233 20-72 (252)
306 PF11968 DUF3321: Putative met 86.4 1 2.2E-05 39.5 4.2 55 191-262 53-111 (219)
307 PF05050 Methyltransf_21: Meth 86.4 1.9 4.1E-05 35.5 5.8 53 195-247 1-61 (167)
308 KOG2798|consensus 85.9 2.3 4.9E-05 39.5 6.2 39 190-228 151-189 (369)
309 KOG1201|consensus 84.3 4.9 0.00011 37.1 7.7 71 189-262 37-121 (300)
310 KOG3350|consensus 84.1 7.3 0.00016 33.1 8.0 75 184-270 68-150 (217)
311 KOG3201|consensus 83.9 1.1 2.3E-05 37.6 2.9 72 190-261 30-109 (201)
312 PRK06194 hypothetical protein; 83.7 7.2 0.00016 35.3 8.9 75 190-267 6-95 (287)
313 PTZ00357 methyltransferase; Pr 83.6 2.8 6.1E-05 42.9 6.3 71 192-262 703-799 (1072)
314 COG3392 Adenine-specific DNA m 83.5 1.1 2.5E-05 40.3 3.2 38 183-220 21-58 (330)
315 KOG0024|consensus 83.4 2.3 5.1E-05 39.6 5.3 43 187-229 167-212 (354)
316 PF07669 Eco57I: Eco57I restri 83.4 0.64 1.4E-05 36.0 1.5 15 255-269 2-16 (106)
317 PRK07523 gluconate 5-dehydroge 82.8 9.8 0.00021 33.8 9.2 74 190-266 10-98 (255)
318 PRK08213 gluconate 5-dehydroge 82.7 7.8 0.00017 34.5 8.6 73 190-265 12-99 (259)
319 KOG1596|consensus 82.2 2.2 4.8E-05 38.0 4.5 75 187-264 154-235 (317)
320 PRK12826 3-ketoacyl-(acyl-carr 82.1 11 0.00023 33.1 9.2 75 190-267 6-95 (251)
321 PRK05854 short chain dehydroge 82.0 11 0.00025 34.8 9.6 75 190-265 14-103 (313)
322 TIGR00571 dam DNA adenine meth 81.7 3.4 7.3E-05 37.7 5.7 85 239-327 155-243 (266)
323 PRK05867 short chain dehydroge 81.6 9.8 0.00021 33.8 8.7 74 190-266 9-97 (253)
324 COG1565 Uncharacterized conser 81.5 15 0.00033 34.8 10.0 45 190-234 78-132 (370)
325 COG1064 AdhP Zn-dependent alco 81.1 3.4 7.3E-05 39.0 5.6 71 186-264 163-238 (339)
326 KOG1331|consensus 80.6 0.85 1.8E-05 41.6 1.3 71 189-268 45-116 (293)
327 COG1743 Adenine-specific DNA m 80.4 2 4.3E-05 44.4 4.0 43 190-232 91-133 (875)
328 PRK07063 short chain dehydroge 79.9 13 0.00029 33.0 9.1 74 190-264 7-95 (260)
329 PRK06949 short chain dehydroge 79.8 15 0.00032 32.6 9.3 73 190-265 9-96 (258)
330 PRK06172 short chain dehydroge 79.7 14 0.0003 32.7 9.1 73 190-265 7-94 (253)
331 PRK06124 gluconate 5-dehydroge 79.5 16 0.00034 32.4 9.3 74 190-266 11-99 (256)
332 PRK07454 short chain dehydroge 79.3 17 0.00038 31.8 9.5 73 190-265 6-93 (241)
333 PRK05876 short chain dehydroge 79.2 15 0.00032 33.4 9.2 74 190-266 6-94 (275)
334 PRK12939 short chain dehydroge 78.9 11 0.00025 33.0 8.2 72 190-264 7-93 (250)
335 PRK07890 short chain dehydroge 78.8 13 0.00028 32.9 8.6 72 190-264 5-91 (258)
336 PRK08217 fabG 3-ketoacyl-(acyl 78.7 13 0.00028 32.7 8.5 73 190-265 5-92 (253)
337 PRK06197 short chain dehydroge 78.4 17 0.00036 33.5 9.4 75 190-265 16-105 (306)
338 PRK08339 short chain dehydroge 78.3 17 0.00038 32.6 9.3 73 190-264 8-94 (263)
339 KOG1562|consensus 78.3 3 6.6E-05 38.3 4.1 76 187-262 119-202 (337)
340 PRK07576 short chain dehydroge 78.2 17 0.00037 32.6 9.2 72 190-264 9-95 (264)
341 PRK09291 short chain dehydroge 78.2 15 0.00033 32.5 8.8 72 191-265 3-83 (257)
342 PRK07666 fabG 3-ketoacyl-(acyl 78.2 18 0.0004 31.6 9.3 73 190-265 7-94 (239)
343 PRK07814 short chain dehydroge 78.0 14 0.0003 33.1 8.5 72 190-264 10-96 (263)
344 COG3510 CmcI Cephalosporin hyd 77.7 3.6 7.9E-05 35.5 4.2 55 190-250 70-130 (237)
345 PRK06139 short chain dehydroge 77.5 17 0.00036 34.2 9.2 73 190-265 7-94 (330)
346 PRK07102 short chain dehydroge 77.2 15 0.00033 32.2 8.5 72 192-265 3-86 (243)
347 COG1062 AdhC Zn-dependent alco 76.8 5.5 0.00012 37.5 5.5 45 186-230 182-229 (366)
348 PRK07097 gluconate 5-dehydroge 76.8 19 0.00041 32.2 9.1 75 190-266 10-98 (265)
349 PRK08862 short chain dehydroge 76.6 17 0.00037 32.0 8.5 72 190-263 5-91 (227)
350 PRK05866 short chain dehydroge 76.4 21 0.00045 32.8 9.4 73 190-265 40-127 (293)
351 COG1255 Uncharacterized protei 76.4 9.1 0.0002 30.1 5.7 62 191-264 15-80 (129)
352 PRK07062 short chain dehydroge 76.2 20 0.00044 31.9 9.1 75 190-265 8-97 (265)
353 PRK08703 short chain dehydroge 76.0 17 0.00038 31.8 8.5 73 190-264 6-96 (239)
354 PRK08251 short chain dehydroge 75.3 23 0.00051 31.1 9.2 75 190-265 2-91 (248)
355 PRK08945 putative oxoacyl-(acy 74.9 21 0.00045 31.4 8.8 73 190-264 12-101 (247)
356 PRK07478 short chain dehydroge 74.8 24 0.00052 31.2 9.2 73 190-265 6-93 (254)
357 COG0338 Dam Site-specific DNA 74.8 2.1 4.5E-05 39.2 2.2 50 176-226 12-61 (274)
358 PRK07904 short chain dehydroge 74.7 16 0.00034 32.7 7.9 75 189-265 7-97 (253)
359 PRK07035 short chain dehydroge 74.6 26 0.00056 30.9 9.3 73 190-265 8-95 (252)
360 PRK07109 short chain dehydroge 74.4 23 0.00049 33.3 9.2 73 190-265 8-95 (334)
361 PRK09496 trkA potassium transp 74.2 9.4 0.0002 37.3 6.8 67 190-264 231-306 (453)
362 cd08283 FDH_like_1 Glutathione 73.8 7.2 0.00016 37.4 5.8 44 187-230 182-228 (386)
363 PRK08589 short chain dehydroge 73.7 24 0.00052 31.8 9.0 73 190-266 6-93 (272)
364 PRK07774 short chain dehydroge 73.1 22 0.00048 31.2 8.5 74 190-266 6-94 (250)
365 PF11899 DUF3419: Protein of u 73.1 12 0.00026 36.1 6.9 47 187-233 33-79 (380)
366 PRK12429 3-hydroxybutyrate deh 72.7 20 0.00044 31.5 8.2 73 190-265 4-91 (258)
367 PRK06125 short chain dehydroge 72.7 29 0.00064 30.7 9.2 74 190-265 7-91 (259)
368 PLN03209 translocon at the inn 72.4 17 0.00037 36.9 8.2 74 189-263 79-167 (576)
369 PRK06720 hypothetical protein; 72.0 38 0.00083 28.4 9.2 74 190-265 16-103 (169)
370 KOG2352|consensus 71.8 1.9 4E-05 42.3 1.1 73 189-262 295-377 (482)
371 PRK09242 tropinone reductase; 71.7 34 0.00073 30.3 9.4 75 190-265 9-98 (257)
372 PRK08277 D-mannonate oxidoredu 71.7 31 0.00067 31.0 9.2 73 190-265 10-97 (278)
373 TIGR00571 dam DNA adenine meth 71.6 6.8 0.00015 35.7 4.8 49 177-227 12-61 (266)
374 PRK09424 pntA NAD(P) transhydr 71.5 8.2 0.00018 38.7 5.6 41 189-229 164-206 (509)
375 PRK13394 3-hydroxybutyrate deh 71.0 22 0.00048 31.4 8.0 73 190-265 7-94 (262)
376 PRK07326 short chain dehydroge 71.0 21 0.00046 31.0 7.8 70 190-263 6-90 (237)
377 PRK03659 glutathione-regulated 69.9 9.7 0.00021 39.1 6.0 59 198-264 406-473 (601)
378 TIGR03206 benzo_BadH 2-hydroxy 69.8 47 0.001 29.0 9.8 74 190-266 3-91 (250)
379 PRK08085 gluconate 5-dehydroge 69.6 37 0.0008 30.0 9.1 73 190-265 9-96 (254)
380 PF02737 3HCDH_N: 3-hydroxyacy 69.6 25 0.00054 29.9 7.6 119 193-331 2-139 (180)
381 PRK08303 short chain dehydroge 69.6 28 0.00061 32.2 8.6 71 190-263 8-103 (305)
382 PRK06940 short chain dehydroge 69.5 24 0.00051 32.0 7.9 70 192-265 4-86 (275)
383 PRK07791 short chain dehydroge 69.3 32 0.00068 31.4 8.8 73 190-265 6-102 (286)
384 PRK12384 sorbitol-6-phosphate 69.2 38 0.00081 30.0 9.1 75 191-266 3-92 (259)
385 PRK06113 7-alpha-hydroxysteroi 68.9 40 0.00086 29.8 9.2 74 190-266 11-99 (255)
386 PRK10904 DNA adenine methylase 68.5 11 0.00025 34.3 5.6 29 239-267 157-186 (271)
387 PRK06196 oxidoreductase; Provi 68.5 31 0.00066 31.9 8.6 69 190-265 26-109 (315)
388 PRK01747 mnmC bifunctional tRN 68.2 26 0.00056 36.4 8.8 73 191-263 59-174 (662)
389 PRK06914 short chain dehydroge 68.1 32 0.00068 30.9 8.5 76 190-266 3-92 (280)
390 PRK08340 glucose-1-dehydrogena 68.0 34 0.00074 30.4 8.6 70 192-265 2-86 (259)
391 PRK10669 putative cation:proto 67.8 11 0.00024 38.2 5.9 59 198-264 423-490 (558)
392 cd05188 MDR Medium chain reduc 67.5 9.3 0.0002 33.8 4.8 42 188-229 133-176 (271)
393 KOG2356|consensus 67.5 2.7 5.9E-05 38.5 1.2 50 211-269 144-198 (366)
394 PRK05650 short chain dehydroge 67.5 27 0.00058 31.3 7.8 71 192-265 2-87 (270)
395 KOG1099|consensus 67.4 4.7 0.0001 35.8 2.6 63 190-264 42-124 (294)
396 PLN02989 cinnamyl-alcohol dehy 67.2 23 0.00049 32.8 7.5 74 190-264 5-86 (325)
397 cd05564 PTS_IIB_chitobiose_lic 67.2 8.9 0.00019 29.0 3.8 53 196-266 4-57 (96)
398 KOG1098|consensus 67.0 6.5 0.00014 39.8 3.7 35 187-221 42-79 (780)
399 PRK07677 short chain dehydroge 66.9 33 0.00071 30.3 8.2 71 191-264 2-87 (252)
400 PRK12481 2-deoxy-D-gluconate 3 66.6 36 0.00078 30.1 8.4 71 190-265 8-93 (251)
401 COG0569 TrkA K+ transport syst 66.5 19 0.00042 31.8 6.5 57 199-262 7-73 (225)
402 KOG0821|consensus 65.9 15 0.00034 32.4 5.4 77 190-268 51-142 (326)
403 PF03721 UDPG_MGDP_dh_N: UDP-g 65.6 6.4 0.00014 33.8 3.1 25 204-228 16-40 (185)
404 PF02086 MethyltransfD12: D12 65.6 9.8 0.00021 34.0 4.5 48 218-271 144-193 (260)
405 PRK07533 enoyl-(acyl carrier p 65.1 37 0.0008 30.3 8.2 73 190-265 10-98 (258)
406 PRK07024 short chain dehydroge 64.9 36 0.00078 30.2 8.1 70 191-264 3-87 (257)
407 PF05206 TRM13: Methyltransfer 64.7 24 0.00051 32.1 6.7 63 187-250 16-85 (259)
408 PF00107 ADH_zinc_N: Zinc-bind 64.7 8.5 0.00018 30.2 3.5 31 199-229 1-32 (130)
409 COG1063 Tdh Threonine dehydrog 64.6 14 0.00029 35.1 5.4 43 189-231 168-213 (350)
410 PRK03562 glutathione-regulated 64.5 13 0.00029 38.2 5.7 62 191-262 401-471 (621)
411 PRK08643 acetoin reductase; Va 64.4 42 0.00092 29.6 8.4 72 191-265 3-89 (256)
412 PLN02662 cinnamyl-alcohol dehy 63.7 26 0.00056 32.2 7.1 74 190-264 4-85 (322)
413 PRK06181 short chain dehydroge 63.5 40 0.00086 29.9 8.1 69 192-263 3-86 (263)
414 KOG0725|consensus 63.4 58 0.0013 29.7 9.2 78 190-267 8-101 (270)
415 PRK05565 fabG 3-ketoacyl-(acyl 62.6 38 0.00083 29.5 7.7 74 190-266 5-94 (247)
416 PLN02780 ketoreductase/ oxidor 62.4 35 0.00077 31.8 7.8 75 190-265 53-142 (320)
417 KOG2782|consensus 62.2 5.1 0.00011 35.2 1.9 80 189-269 43-132 (303)
418 PRK05786 fabG 3-ketoacyl-(acyl 62.2 48 0.001 28.7 8.3 71 190-264 5-90 (238)
419 TIGR01963 PHB_DH 3-hydroxybuty 62.2 46 0.001 29.1 8.2 71 192-265 3-88 (255)
420 PRK10904 DNA adenine methylase 62.2 10 0.00022 34.7 3.9 49 177-227 15-63 (271)
421 PRK07453 protochlorophyllide o 62.1 53 0.0012 30.3 8.9 73 190-265 6-93 (322)
422 PRK06200 2,3-dihydroxy-2,3-dih 62.0 53 0.0011 29.2 8.6 70 190-265 6-90 (263)
423 COG4017 Uncharacterized protei 62.0 16 0.00034 31.6 4.6 43 189-231 44-87 (254)
424 PRK09496 trkA potassium transp 61.9 25 0.00054 34.3 6.9 60 198-264 6-74 (453)
425 PRK06114 short chain dehydroge 61.1 62 0.0013 28.6 8.9 74 190-266 8-97 (254)
426 PLN02253 xanthoxin dehydrogena 60.7 58 0.0013 29.2 8.7 72 190-265 18-104 (280)
427 PF05063 MT-A70: MT-A70 ; Int 60.7 4.7 0.0001 34.2 1.4 15 256-270 1-15 (176)
428 PRK05855 short chain dehydroge 60.6 36 0.00077 34.1 8.0 73 190-265 315-402 (582)
429 PRK12743 oxidoreductase; Provi 60.3 62 0.0014 28.6 8.8 74 190-266 2-91 (256)
430 PF05575 V_cholerae_RfbT: Vibr 60.2 11 0.00024 31.7 3.5 64 181-246 71-136 (286)
431 PRK05875 short chain dehydroge 60.1 56 0.0012 29.2 8.5 74 190-264 7-95 (276)
432 PRK06935 2-deoxy-D-gluconate 3 60.1 60 0.0013 28.7 8.6 73 190-266 15-102 (258)
433 PRK05717 oxidoreductase; Valid 60.0 51 0.0011 29.1 8.1 71 190-266 10-95 (255)
434 PRK05872 short chain dehydroge 60.0 43 0.00093 30.6 7.8 72 190-265 9-95 (296)
435 PF00106 adh_short: short chai 60.0 36 0.00079 27.6 6.7 72 193-267 3-92 (167)
436 PRK08993 2-deoxy-D-gluconate 3 59.6 54 0.0012 29.0 8.2 71 190-265 10-95 (253)
437 PRK12823 benD 1,6-dihydroxycyc 59.6 64 0.0014 28.5 8.7 71 190-264 8-93 (260)
438 PRK08265 short chain dehydroge 59.3 59 0.0013 28.9 8.5 70 190-265 6-90 (261)
439 PRK05599 hypothetical protein; 59.3 50 0.0011 29.2 7.9 71 193-265 3-87 (246)
440 TIGR03201 dearomat_had 6-hydro 59.3 21 0.00046 33.5 5.8 43 187-229 164-208 (349)
441 PRK07066 3-hydroxybutyryl-CoA 59.1 1E+02 0.0023 28.9 10.2 41 191-231 8-50 (321)
442 TIGR00853 pts-lac PTS system, 58.7 18 0.00039 27.3 4.2 56 192-266 5-61 (95)
443 PRK05653 fabG 3-ketoacyl-(acyl 58.4 60 0.0013 28.1 8.2 74 190-266 5-93 (246)
444 PRK01438 murD UDP-N-acetylmura 57.9 62 0.0014 31.9 9.1 69 190-264 16-87 (480)
445 cd08237 ribitol-5-phosphate_DH 57.8 21 0.00045 33.5 5.4 43 187-229 161-207 (341)
446 KOG0022|consensus 57.3 26 0.00057 32.8 5.6 46 184-229 187-235 (375)
447 PF01234 NNMT_PNMT_TEMT: NNMT/ 57.2 10 0.00023 34.3 3.0 43 189-231 56-99 (256)
448 PRK07231 fabG 3-ketoacyl-(acyl 57.0 38 0.00083 29.6 6.8 72 190-265 5-91 (251)
449 cd08254 hydroxyacyl_CoA_DH 6-h 56.9 26 0.00056 32.3 5.8 43 187-229 163-207 (338)
450 PRK06182 short chain dehydroge 56.8 58 0.0013 29.1 8.0 69 190-267 3-86 (273)
451 PRK07831 short chain dehydroge 56.8 83 0.0018 27.9 9.0 75 190-265 17-107 (262)
452 PF02719 Polysacc_synt_2: Poly 56.6 31 0.00067 31.9 6.1 73 196-268 3-90 (293)
453 PRK06701 short chain dehydroge 56.5 73 0.0016 29.0 8.7 73 190-265 46-134 (290)
454 cd00401 AdoHcyase S-adenosyl-L 56.3 35 0.00076 33.2 6.7 53 177-229 186-243 (413)
455 TIGR01832 kduD 2-deoxy-D-gluco 56.2 80 0.0017 27.6 8.7 72 190-266 5-91 (248)
456 PRK07041 short chain dehydroge 55.4 62 0.0013 27.9 7.8 65 198-265 4-79 (230)
457 PRK07060 short chain dehydroge 55.2 76 0.0016 27.6 8.4 69 190-266 9-88 (245)
458 PRK08293 3-hydroxybutyryl-CoA 54.4 1.7E+02 0.0037 26.7 10.7 40 192-231 5-46 (287)
459 PLN02668 indole-3-acetate carb 54.2 8.3 0.00018 37.1 2.0 20 190-209 64-83 (386)
460 PRK08628 short chain dehydroge 53.8 83 0.0018 27.7 8.4 72 190-265 7-93 (258)
461 TIGR02822 adh_fam_2 zinc-bindi 53.5 31 0.00067 32.2 5.8 44 186-229 162-207 (329)
462 PF05711 TylF: Macrocin-O-meth 53.4 39 0.00084 30.5 6.0 73 190-262 75-184 (248)
463 KOG1205|consensus 53.3 74 0.0016 29.3 7.9 78 190-267 12-103 (282)
464 PRK09072 short chain dehydroge 53.1 79 0.0017 28.0 8.2 72 190-265 5-90 (263)
465 PRK07806 short chain dehydroge 53.1 81 0.0017 27.5 8.2 73 190-265 6-94 (248)
466 PRK08226 short chain dehydroge 53.1 99 0.0021 27.3 8.9 72 190-265 6-92 (263)
467 PRK10310 PTS system galactitol 53.0 46 0.001 25.0 5.6 55 196-267 7-62 (94)
468 PRK09186 flagellin modificatio 53.0 78 0.0017 27.7 8.1 73 190-263 4-91 (256)
469 PRK12935 acetoacetyl-CoA reduc 52.9 1.2E+02 0.0026 26.4 9.3 74 190-266 6-95 (247)
470 PRK14106 murD UDP-N-acetylmura 52.7 61 0.0013 31.6 7.9 71 190-265 5-78 (450)
471 PRK09880 L-idonate 5-dehydroge 52.6 30 0.00066 32.3 5.6 41 189-229 169-212 (343)
472 PRK07074 short chain dehydroge 52.2 1E+02 0.0022 27.1 8.8 70 191-265 3-87 (257)
473 PRK07832 short chain dehydroge 52.0 71 0.0015 28.6 7.8 67 198-265 7-88 (272)
474 PRK07889 enoyl-(acyl carrier p 51.9 54 0.0012 29.2 6.9 71 190-265 7-95 (256)
475 PRK08415 enoyl-(acyl carrier p 51.7 99 0.0022 27.9 8.7 73 190-265 5-93 (274)
476 PRK08594 enoyl-(acyl carrier p 51.7 75 0.0016 28.3 7.8 72 190-265 7-97 (257)
477 PRK07201 short chain dehydroge 51.4 87 0.0019 32.1 9.2 74 190-266 371-459 (657)
478 PRK06079 enoyl-(acyl carrier p 50.9 72 0.0016 28.2 7.5 72 190-266 7-94 (252)
479 PRK06057 short chain dehydroge 50.7 78 0.0017 27.9 7.7 68 190-265 7-89 (255)
480 PRK08690 enoyl-(acyl carrier p 50.3 84 0.0018 28.0 7.9 74 190-266 6-95 (261)
481 cd08261 Zn_ADH7 Alcohol dehydr 50.3 19 0.00042 33.3 3.8 44 186-229 156-201 (337)
482 PLN02740 Alcohol dehydrogenase 49.9 32 0.0007 32.8 5.4 44 186-229 195-241 (381)
483 PRK08278 short chain dehydroge 49.6 1E+02 0.0022 27.6 8.4 74 190-266 6-101 (273)
484 PRK07825 short chain dehydroge 49.4 98 0.0021 27.6 8.3 69 190-265 5-88 (273)
485 TIGR01289 LPOR light-dependent 49.3 1.1E+02 0.0023 28.4 8.6 73 190-265 3-91 (314)
486 TIGR02632 RhaD_aldol-ADH rhamn 49.0 1.1E+02 0.0023 32.0 9.3 74 190-265 414-503 (676)
487 PF01555 N6_N4_Mtase: DNA meth 49.0 5.3 0.00012 34.6 -0.2 48 256-305 1-54 (231)
488 PRK06138 short chain dehydroge 48.9 95 0.0021 27.1 8.0 73 190-266 5-92 (252)
489 PRK13656 trans-2-enoyl-CoA red 48.9 2.6E+02 0.0057 27.1 11.8 78 189-269 40-145 (398)
490 PRK07067 sorbitol dehydrogenas 48.9 80 0.0017 27.8 7.5 70 190-265 6-90 (257)
491 PRK09590 celB cellobiose phosp 48.8 47 0.001 25.6 5.1 51 196-264 6-59 (104)
492 PRK12744 short chain dehydroge 48.7 1.2E+02 0.0026 26.6 8.7 73 190-265 8-99 (257)
493 PF06460 NSP13: Coronavirus NS 48.7 38 0.00083 30.7 5.1 114 188-320 60-184 (299)
494 TIGR02622 CDP_4_6_dhtase CDP-g 48.6 53 0.0011 30.8 6.6 71 190-264 4-84 (349)
495 PRK06505 enoyl-(acyl carrier p 48.6 1.1E+02 0.0024 27.5 8.5 73 190-265 7-95 (271)
496 COG1748 LYS9 Saccharopine dehy 48.6 57 0.0012 31.5 6.7 70 192-268 3-82 (389)
497 cd05278 FDH_like Formaldehyde 48.6 22 0.00048 33.0 4.0 44 186-229 164-210 (347)
498 COG5379 BtaA S-adenosylmethion 48.6 56 0.0012 30.3 6.2 47 188-234 62-108 (414)
499 PRK07984 enoyl-(acyl carrier p 48.5 1E+02 0.0022 27.6 8.2 74 190-266 6-95 (262)
500 PRK12829 short chain dehydroge 48.2 81 0.0018 27.7 7.5 71 190-265 11-96 (264)
No 1
>KOG2730|consensus
Probab=99.93 E-value=1.2e-26 Score=196.94 Aligned_cols=189 Identities=49% Similarity=0.859 Sum_probs=167.5
Q ss_pred CCChhhhcCcchhHHhhccchhhhccCcccccCCccccccCHHHHHHHHHHHhhcccccccCCCCCCHHHHHHHHHHhcC
Q psy15742 109 NVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCK 188 (342)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~~ 188 (342)
..+.....+|.+.+||.+|+.+|+++|+++.++.++|+++||+.++..++.++...+
T Consensus 37 ~~~~~~~~~p~l~kywk~ryrlfsrfd~gi~md~e~wfsvTpe~ia~~iA~~v~~~~----------------------- 93 (263)
T KOG2730|consen 37 IESSKPAKNPELFKYWKNRYRLFSRFDSGIYMDREGWFSVTPEKIAEHIANRVVACM----------------------- 93 (263)
T ss_pred ccccccCCChHHHHHHHHHHHHHHhhccceeecccceEEeccHHHHHHHHHHHHHhc-----------------------
Confidence 334556677899999999999999999999999999999999999999988875332
Q ss_pred CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC-----CCccEEEEcC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-----LQGDVVFLSP 263 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~-----~~~D~Ii~nP 263 (342)
....|+|.+||.|+.++.+|..+..|++||+||.-+.+|++|++.+|++++++|++||+++.... ..+|.|+..|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 24589999999999999999999999999999999999999999999999999999999987532 2467999999
Q ss_pred CCCCCcccc-ccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCc
Q psy15742 264 PWGGPEYAR-SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKG 322 (342)
Q Consensus 264 P~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 322 (342)
||++++|.. ..+|+..+.++ .+..++....+++++..+++|+|....+++.+..+..
T Consensus 174 pwggp~y~~~~~~DL~~~~~p--~~~~~fk~s~kispnv~~flprntdv~qls~~~~~~~ 231 (263)
T KOG2730|consen 174 PWGGPSYLRADVYDLETHLKP--MGTKIFKSSLKISPNVAYFLPRNTDVNQLARLARKVL 231 (263)
T ss_pred CCCCcchhhhhhhhhhhhcch--hHHHHHHhhhhcCcchhhhCCcchhHHHHHHhcCccc
Confidence 999999887 78899888877 5778999999999999999999999999998865543
No 2
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.89 E-value=2.8e-22 Score=187.39 Aligned_cols=132 Identities=22% Similarity=0.311 Sum_probs=104.5
Q ss_pred CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEEcCCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPPWG 266 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~nPP~~ 266 (342)
++.+|||+|||+|.+++.+|+.+.+|+|+|+|+.+++.|++|++.+|+ ++++|+++|+.++.. ...||+|++|||+.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 467999999999999999999999999999999999999999999999 589999999987652 34799999999987
Q ss_pred CCccccccccccccCcCCCCchhhhHhhhccCCCceeec---CCCCCHHHHHHhhCCCcEEEEecccCCCCCCCccccC
Q psy15742 267 GPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL---PRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQDMETV 342 (342)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~l~~~~~~~~~i~~i~~~~~fp~t~h~e~~ 342 (342)
+... .+.+......++.+.++ |.+.. +++..+ .+|++..+++.||||+|+|+|+|
T Consensus 252 G~~~------------------~~~~~l~~~~~~~ivyvsc~p~t~~-rd~~~l--~~y~~~~~~~~DmFP~T~HvE~v 309 (315)
T PRK03522 252 GIGK------------------ELCDYLSQMAPRFILYSSCNAQTMA-KDLAHL--PGYRIERVQLFDMFPHTAHYEVL 309 (315)
T ss_pred CccH------------------HHHHHHHHcCCCeEEEEECCcccch-hHHhhc--cCcEEEEEEEeccCCCCCeEEEE
Confidence 6521 22223333344444444 33333 335444 79999999999999999999986
No 3
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.89 E-value=1.5e-22 Score=197.58 Aligned_cols=152 Identities=21% Similarity=0.274 Sum_probs=118.0
Q ss_pred CCCCCCH---HHHHHHHHHhc--CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy15742 170 GWYSVTP---EKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 244 (342)
Q Consensus 170 ~~~~~~~---e~~~~~i~~~~--~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~ 244 (342)
+||+.++ +.+.+.+.+.+ .++.+|||+|||+|.+++.+|+.+.+|+|+|+|+.|++.|++|++.+++. ++++++
T Consensus 273 ~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~ 351 (443)
T PRK13168 273 DFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLD-NVTFYH 351 (443)
T ss_pred CeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEE
Confidence 4566665 56666666655 36789999999999999999998889999999999999999999999984 799999
Q ss_pred ccccccCC-----CCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec---CCCCCHHHHHH
Q psy15742 245 GDFFALAP-----SLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL---PRTSDVFEIFH 316 (342)
Q Consensus 245 ~D~~~~~~-----~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~l~~ 316 (342)
+|+.+... +.+||+|++||||.+.. ..++......++.+.++ |.++.+ ++..
T Consensus 352 ~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~-------------------~~~~~l~~~~~~~ivyvSCnp~tlaR-Dl~~ 411 (443)
T PRK13168 352 ANLEEDFTDQPWALGGFDKVLLDPPRAGAA-------------------EVMQALAKLGPKRIVYVSCNPATLAR-DAGV 411 (443)
T ss_pred eChHHhhhhhhhhcCCCCEEEECcCCcChH-------------------HHHHHHHhcCCCeEEEEEeChHHhhc-cHHH
Confidence 99976532 34799999999998752 11122333344444444 333333 4666
Q ss_pred hhCCCcEEEEecccCCCCCCCccccC
Q psy15742 317 DSGKKGSFISLTGRQMFSPSQDMETV 342 (342)
Q Consensus 317 ~~~~~~~i~~i~~~~~fp~t~h~e~~ 342 (342)
+...||++..++++||||+|+|+|+|
T Consensus 412 L~~~gY~l~~i~~~DmFP~T~HvE~v 437 (443)
T PRK13168 412 LVEAGYRLKRAGMLDMFPHTGHVESM 437 (443)
T ss_pred HhhCCcEEEEEEEeccCCCCCcEEEE
Confidence 66789999999999999999999986
No 4
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.88 E-value=2.9e-22 Score=191.24 Aligned_cols=153 Identities=18% Similarity=0.289 Sum_probs=115.6
Q ss_pred cCCCCCCH---HHHHHHHHHhc--CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q psy15742 169 DGWYSVTP---EKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI 243 (342)
Q Consensus 169 ~~~~~~~~---e~~~~~i~~~~--~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~ 243 (342)
.+||+.+. +.+.+.+...+ .++.+|||+|||+|.+++.+|..+.+|+|+|+|+.+++.|++|++.++++ +++++
T Consensus 208 ~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~ 286 (374)
T TIGR02085 208 QSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLD-NLSFA 286 (374)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEE
Confidence 45677766 34444444443 24679999999999999999988899999999999999999999999984 89999
Q ss_pred EccccccCC--CCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCC-CC-HHHHHHhhC
Q psy15742 244 QGDFFALAP--SLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRT-SD-VFEIFHDSG 319 (342)
Q Consensus 244 ~~D~~~~~~--~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~l~~~~~ 319 (342)
++|+.++.. ..+||+|++||||.|... .+++......++.+.+++.+ .+ .+++..+
T Consensus 287 ~~d~~~~~~~~~~~~D~vi~DPPr~G~~~------------------~~l~~l~~~~p~~ivyvsc~p~TlaRDl~~L-- 346 (374)
T TIGR02085 287 ALDSAKFATAQMSAPELVLVNPPRRGIGK------------------ELCDYLSQMAPKFILYSSCNAQTMAKDIAEL-- 346 (374)
T ss_pred ECCHHHHHHhcCCCCCEEEECCCCCCCcH------------------HHHHHHHhcCCCeEEEEEeCHHHHHHHHHHh--
Confidence 999987653 246999999999876521 22233334555555555333 22 2335555
Q ss_pred CCcEEEEecccCCCCCCCccccC
Q psy15742 320 KKGSFISLTGRQMFSPSQDMETV 342 (342)
Q Consensus 320 ~~~~i~~i~~~~~fp~t~h~e~~ 342 (342)
.||++..+++.||||+|+|+|+|
T Consensus 347 ~gy~l~~~~~~DmFPqT~HvE~v 369 (374)
T TIGR02085 347 SGYQIERVQLFDMFPHTSHYEVL 369 (374)
T ss_pred cCceEEEEEEeccCCCCCcEEEE
Confidence 68999999999999999999986
No 5
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.88 E-value=2.4e-22 Score=167.58 Aligned_cols=124 Identities=52% Similarity=0.937 Sum_probs=98.5
Q ss_pred eEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCC----ccEEEEcCCCCC
Q psy15742 192 VVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ----GDVVFLSPPWGG 267 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~----~D~Ii~nPP~~~ 267 (342)
.|+|++||.|+.++++|+.+.+|+++|+|+..++.|++|++.+|+.++++++++|+.+...... +|+|+++|||+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWGG 81 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWGG 81 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BSS
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCCC
Confidence 6999999999999999999999999999999999999999999998899999999998864333 899999999999
Q ss_pred Ccccc-ccccc-cccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHh
Q psy15742 268 PEYAR-SSFSI-DNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHD 317 (342)
Q Consensus 268 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~ 317 (342)
++|.. ..+++ ..+.|- ++..+++..+.++++++++||+|++..++..+
T Consensus 82 p~Y~~~~~fdL~~~~~p~--~~~~l~~~~~~~t~nv~l~LPRn~dl~ql~~~ 131 (163)
T PF09445_consen 82 PSYSKKDVFDLEKSMQPF--NLEDLLKAARKITPNVVLFLPRNSDLNQLSQL 131 (163)
T ss_dssp GGGGGSSSB-TTTSSSS----HHHHHHHHHHH-S-EEEEEETTB-HHHHHHT
T ss_pred ccccccCccCHHHccCCC--CHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHH
Confidence 99987 67888 444464 67788899999999999999999999999977
No 6
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=6.3e-22 Score=190.29 Aligned_cols=154 Identities=24% Similarity=0.409 Sum_probs=121.2
Q ss_pred CCCCCCH---HHHHHHHHHhcC--CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy15742 170 GWYSVTP---EKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 244 (342)
Q Consensus 170 ~~~~~~~---e~~~~~i~~~~~--~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~ 244 (342)
.||++++ +.+.+++.+.+. ++++++|++||.|++++.+|+...+|+|+|+++++++.|++|++.||+. |++|+.
T Consensus 269 sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~ 347 (432)
T COG2265 269 SFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID-NVEFIA 347 (432)
T ss_pred CceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEe
Confidence 5677766 456666666665 5679999999999999999999999999999999999999999999995 599999
Q ss_pred ccccccCCC----CCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCC-HHHHHHhhC
Q psy15742 245 GDFFALAPS----LQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSD-VFEIFHDSG 319 (342)
Q Consensus 245 ~D~~~~~~~----~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~ 319 (342)
+|+.++... ..+|+|+.|||+.|.+. ..+..+.+...+.++|+.++-.+ .+++..+..
T Consensus 348 ~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~-----------------~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~~ 410 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVVDPPRAGADR-----------------EVLKQLAKLKPKRIVYVSCNPATLARDLAILAS 410 (432)
T ss_pred CCHHHHhhhccccCCCCEEEECCCCCCCCH-----------------HHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh
Confidence 999988633 37899999999998841 12223333334445555522222 334777778
Q ss_pred CCcEEEEecccCCCCCCCcccc
Q psy15742 320 KKGSFISLTGRQMFSPSQDMET 341 (342)
Q Consensus 320 ~~~~i~~i~~~~~fp~t~h~e~ 341 (342)
.++++.++.++||||+|+|+|+
T Consensus 411 ~gy~i~~v~~~DmFP~T~HvE~ 432 (432)
T COG2265 411 TGYEIERVQPFDMFPHTHHVEA 432 (432)
T ss_pred CCeEEEEEEEeccCCCccccCC
Confidence 8999999999999999999996
No 7
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.87 E-value=9.2e-22 Score=186.87 Aligned_cols=153 Identities=17% Similarity=0.255 Sum_probs=115.0
Q ss_pred cCCCCCCH---HHHHHHHHHhcCC-CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy15742 169 DGWYSVTP---EKVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 244 (342)
Q Consensus 169 ~~~~~~~~---e~~~~~i~~~~~~-~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~ 244 (342)
.+||+.++ +.+.+.+.+.+.. +.++||+|||+|.+++.+++.+.+|+|+|.|+.+++.|++|+..+|++ ++++++
T Consensus 182 ~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~ 260 (362)
T PRK05031 182 NSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGID-NVQIIR 260 (362)
T ss_pred CCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEE
Confidence 45777774 5677777766643 357999999999999999988889999999999999999999999984 899999
Q ss_pred ccccccCC-----------------CCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCC
Q psy15742 245 GDFFALAP-----------------SLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPR 307 (342)
Q Consensus 245 ~D~~~~~~-----------------~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (342)
+|+.++.+ ..+||+|++||||.|... .++..... .+.++|+.+.
T Consensus 261 ~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~------------------~~l~~l~~-~~~ivyvSC~ 321 (362)
T PRK05031 261 MSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDD------------------ETLKLVQA-YERILYISCN 321 (362)
T ss_pred CCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcH------------------HHHHHHHc-cCCEEEEEeC
Confidence 99987531 125899999999876521 12222222 3444554422
Q ss_pred CCC-HHHHHHhhCCCcEEEEecccCCCCCCCccccC
Q psy15742 308 TSD-VFEIFHDSGKKGSFISLTGRQMFSPSQDMETV 342 (342)
Q Consensus 308 ~~~-~~~l~~~~~~~~~i~~i~~~~~fp~t~h~e~~ 342 (342)
-.+ .+++..+. .+|++..+++.||||+|+|+|+|
T Consensus 322 p~tlarDl~~L~-~gY~l~~v~~~DmFPqT~HvE~v 356 (362)
T PRK05031 322 PETLCENLETLS-QTHKVERFALFDQFPYTHHMECG 356 (362)
T ss_pred HHHHHHHHHHHc-CCcEEEEEEEcccCCCCCcEEEE
Confidence 222 33455554 48999999999999999999986
No 8
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.87 E-value=6.7e-22 Score=187.01 Aligned_cols=152 Identities=25% Similarity=0.430 Sum_probs=102.0
Q ss_pred cCCCCCCH---HHHHHHHHHhcCC-CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy15742 169 DGWYSVTP---EKVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 244 (342)
Q Consensus 169 ~~~~~~~~---e~~~~~i~~~~~~-~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~ 244 (342)
.+||++++ +.+++.+.+.++. +..+||++||+|++++.+|..+.+|+|||+++.+++.|++|++.|++ ++++|++
T Consensus 172 ~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~ 250 (352)
T PF05958_consen 172 GSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIR 250 (352)
T ss_dssp TS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE
T ss_pred CcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEE
Confidence 45666665 4555666666653 34899999999999999999999999999999999999999999999 4899999
Q ss_pred ccccccCC-----------------CCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec--
Q psy15742 245 GDFFALAP-----------------SLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL-- 305 (342)
Q Consensus 245 ~D~~~~~~-----------------~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-- 305 (342)
+++.++.. ...+|+|+.|||+.|.+. .+++..... +.++|+.
T Consensus 251 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~------------------~~~~~~~~~-~~ivYvSCn 311 (352)
T PF05958_consen 251 GDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDE------------------KVIELIKKL-KRIVYVSCN 311 (352)
T ss_dssp --SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCH------------------HHHHHHHHS-SEEEEEES-
T ss_pred eeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchH------------------HHHHHHhcC-CeEEEEECC
Confidence 88765421 126899999999999842 222333333 5566665
Q ss_pred CCCCCHHHHHHhhCCCcEEEEecccCCCCCCCccccC
Q psy15742 306 PRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQDMETV 342 (342)
Q Consensus 306 ~~~~~~~~l~~~~~~~~~i~~i~~~~~fp~t~h~e~~ 342 (342)
|.++ .+++..+. .+|++..+.++||||+|+|+|+|
T Consensus 312 P~tl-aRDl~~L~-~~y~~~~v~~~DmFP~T~HvE~v 346 (352)
T PF05958_consen 312 PATL-ARDLKILK-EGYKLEKVQPVDMFPQTHHVETV 346 (352)
T ss_dssp HHHH-HHHHHHHH-CCEEEEEEEEE-SSTTSS--EEE
T ss_pred HHHH-HHHHHHHh-hcCEEEEEEEeecCCCCCcEEEE
Confidence 3333 33355554 69999999999999999999985
No 9
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.86 E-value=2.1e-21 Score=183.79 Aligned_cols=152 Identities=15% Similarity=0.248 Sum_probs=113.7
Q ss_pred cCCCCCCH---HHHHHHHHHhcC-CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy15742 169 DGWYSVTP---EKVAQHIASRCK-ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 244 (342)
Q Consensus 169 ~~~~~~~~---e~~~~~i~~~~~-~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~ 244 (342)
.+||+.++ +.+++.+.+... .+.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.|++|++.++++ ++++++
T Consensus 173 ~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~ 251 (353)
T TIGR02143 173 NSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNID-NVQIIR 251 (353)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEE
Confidence 45676665 556666666654 2347999999999999999998889999999999999999999999984 799999
Q ss_pred ccccccCCC-----------------CCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec--
Q psy15742 245 GDFFALAPS-----------------LQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL-- 305 (342)
Q Consensus 245 ~D~~~~~~~-----------------~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-- 305 (342)
+|+.++... ..||+|++|||+.|... .+++.... .+.++|+.
T Consensus 252 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~------------------~~l~~l~~-~~~ivYvsC~ 312 (353)
T TIGR02143 252 MSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDP------------------DTCKLVQA-YERILYISCN 312 (353)
T ss_pred cCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcH------------------HHHHHHHc-CCcEEEEEcC
Confidence 999875421 13899999999876521 22222222 34445544
Q ss_pred CCCCCHHHHHHhhCCCcEEEEecccCCCCCCCccccC
Q psy15742 306 PRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQDMETV 342 (342)
Q Consensus 306 ~~~~~~~~l~~~~~~~~~i~~i~~~~~fp~t~h~e~~ 342 (342)
|.++ .+++..+. .+|++..++++||||+|+|+|+|
T Consensus 313 p~tl-aRDl~~L~-~~Y~l~~v~~~DmFP~T~HvE~v 347 (353)
T TIGR02143 313 PETL-KANLEQLS-ETHRVERFALFDQFPYTHHMECG 347 (353)
T ss_pred HHHH-HHHHHHHh-cCcEEEEEEEcccCCCCCcEEEE
Confidence 2222 23355554 55999999999999999999986
No 10
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.83 E-value=5.7e-20 Score=179.11 Aligned_cols=153 Identities=20% Similarity=0.394 Sum_probs=115.7
Q ss_pred cCCCCCCHH---HHHHHHHHhc--CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q psy15742 169 DGWYSVTPE---KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI 243 (342)
Q Consensus 169 ~~~~~~~~e---~~~~~i~~~~--~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~ 243 (342)
..||+.+++ .+.+.+...+ .++.+|||+|||+|.+++.+|+.+.+|+|+|+|+.+++.|++|++.+++ ++++++
T Consensus 267 ~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~ 345 (431)
T TIGR00479 267 RDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-ANVEFL 345 (431)
T ss_pred CceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEE
Confidence 457777764 4455555544 4667999999999999999999888999999999999999999999998 489999
Q ss_pred EccccccCC-----CCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCC--CHHHHHH
Q psy15742 244 QGDFFALAP-----SLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTS--DVFEIFH 316 (342)
Q Consensus 244 ~~D~~~~~~-----~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~l~~ 316 (342)
++|+.+..+ ...||+|++|||+.+... .+++......++.+.+++.+- -..++..
T Consensus 346 ~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~~------------------~~l~~l~~l~~~~ivyvsc~p~tlard~~~ 407 (431)
T TIGR00479 346 AGTLETVLPKQPWAGQIPDVLLLDPPRKGCAA------------------EVLRTIIELKPERIVYVSCNPATLARDLEF 407 (431)
T ss_pred eCCHHHHHHHHHhcCCCCCEEEECcCCCCCCH------------------HHHHHHHhcCCCEEEEEcCCHHHHHHHHHH
Confidence 999976532 346999999999876421 222222334455555543332 1234556
Q ss_pred hhCCCcEEEEecccCCCCCCCccc
Q psy15742 317 DSGKKGSFISLTGRQMFSPSQDME 340 (342)
Q Consensus 317 ~~~~~~~i~~i~~~~~fp~t~h~e 340 (342)
+...+|++..+.+.||||+|+|+|
T Consensus 408 l~~~gy~~~~~~~~DmFP~T~HvE 431 (431)
T TIGR00479 408 LCKEGYGITWVQPVDMFPHTAHVE 431 (431)
T ss_pred HHHCCeeEEEEEEeccCCCCCCCC
Confidence 667789999999999999999998
No 11
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.76 E-value=2.3e-18 Score=162.67 Aligned_cols=117 Identities=25% Similarity=0.296 Sum_probs=93.7
Q ss_pred CCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccC-----CCCCccEEEEc
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA-----PSLQGDVVFLS 262 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~-----~~~~~D~Ii~n 262 (342)
|++|||++|+||++++++|..|+ +||+||+|..++++|++|++.||++ +++.|+++|+++++ ...+||+||+|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 89999999999999999999866 9999999999999999999999985 57899999999987 23489999999
Q ss_pred CCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHH
Q psy15742 263 PPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVF 312 (342)
Q Consensus 263 PP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (342)
|| ++.+..........+ -...+..+...+++++.+++++|....
T Consensus 298 PP----sF~r~k~~~~~~~rd--y~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 298 PP----SFARSKKQEFSAQRD--YKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred Cc----ccccCcccchhHHHH--HHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 99 776633333222222 112556677788888888887666544
No 12
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.66 E-value=7.1e-17 Score=147.13 Aligned_cols=137 Identities=24% Similarity=0.368 Sum_probs=90.6
Q ss_pred CCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccC----CCCCccEEEEcC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA----PSLQGDVVFLSP 263 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~----~~~~~D~Ii~nP 263 (342)
|++|||++|.||+++++++..| .+|++||.|..++++|++|++.||++ ++++++++|+++++ ..++||+||+||
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 8899999999999999999885 58999999999999999999999986 68999999999865 245899999999
Q ss_pred CCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCC---HHHHHH---hhCCCcEEEEec-ccCCCCC
Q psy15742 264 PWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSD---VFEIFH---DSGKKGSFISLT-GRQMFSP 335 (342)
Q Consensus 264 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~l~~---~~~~~~~i~~i~-~~~~fp~ 335 (342)
| ++.+..+++.+-++. .+..+...+.+++.+++++++. ...+.+ ...+.+++.+.. ...-||.
T Consensus 204 P----sF~k~~~~~~~~y~~-----L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~~~~~~~~~~p~df~~ 273 (286)
T PF10672_consen 204 P----SFAKSKFDLERDYKK-----LLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAREVEFIERLGQPPDFPD 273 (286)
T ss_dssp S----SEESSTCEHHHHHHH-----HHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHHCEEEEEEE-------
T ss_pred C----CCCCCHHHHHHHHHH-----HHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCccceEeeeecccccccc
Confidence 9 777766665544433 4555666777887777644442 222222 223455555443 3334655
No 13
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.65 E-value=1e-15 Score=157.05 Aligned_cols=145 Identities=18% Similarity=0.215 Sum_probs=98.1
Q ss_pred CCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccCC--CCCccEEEEcCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALAP--SLQGDVVFLSPPW 265 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~~--~~~~D~Ii~nPP~ 265 (342)
|.+|||+|||||++++.+++.| .+|+++|+|+.+++.|++|++.||+. ++++++++|+.+++. ..+||+||+||||
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 7899999999999999999985 57999999999999999999999996 589999999988752 4589999999998
Q ss_pred CCCcccc-ccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHH--HHHhhCCCcEEEEecccC---CCCCCCcc
Q psy15742 266 GGPEYAR-SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFE--IFHDSGKKGSFISLTGRQ---MFSPSQDM 339 (342)
Q Consensus 266 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--l~~~~~~~~~i~~i~~~~---~fp~t~h~ 339 (342)
....... ...+....++. .+....+.+.+++.+++..+..... .......++.+..+.... -||.+..+
T Consensus 619 f~~~~~~~~~~~~~~~y~~-----l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~Dhp~~~~~ 693 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVA-----LIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITAKTLPPDFARNPKI 693 (702)
T ss_pred CCCCCccchhhhHHHHHHH-----HHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEecCCCCCCCCCCccc
Confidence 7542110 11111111121 3333455677777777744444221 222223345554444333 26655543
No 14
>KOG2187|consensus
Probab=99.65 E-value=5.5e-16 Score=147.54 Aligned_cols=154 Identities=21% Similarity=0.325 Sum_probs=110.9
Q ss_pred CCCCCCH---HHHHHHHHHh--cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy15742 170 GWYSVTP---EKVAQHIASR--CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 244 (342)
Q Consensus 170 ~~~~~~~---e~~~~~i~~~--~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~ 244 (342)
.||+.++ |.+-..+.+. ++.+..++|++||||.+++.+|+...+|+||++++.+++.|+.|++.||++ |.+|++
T Consensus 359 AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~ 437 (534)
T KOG2187|consen 359 AFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIV 437 (534)
T ss_pred hhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCcc-ceeeee
Confidence 4666655 4445555554 356789999999999999999999999999999999999999999999995 899999
Q ss_pred ccccccCCC------CCcc-EEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCC--HHHHH
Q psy15742 245 GDFFALAPS------LQGD-VVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSD--VFEIF 315 (342)
Q Consensus 245 ~D~~~~~~~------~~~D-~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~l~ 315 (342)
|-+++..+. ..-+ ++++|||+.|.+.. .+..+.....+..+.|.+.|-. ..++.
T Consensus 438 gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~-----------------~ik~l~~~~~~~rlvyvSCn~~t~ar~v~ 500 (534)
T KOG2187|consen 438 GQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMK-----------------VIKALRAYKNPRRLVYVSCNPHTAARNVI 500 (534)
T ss_pred cchhhccchhcccCCCCCceEEEECCCcccccHH-----------------HHHHHHhccCccceEEEEcCHHHhhhhHH
Confidence 977665421 1345 88999999887531 2222222332333333333333 23333
Q ss_pred Hhh--------CCCcEEEEecccCCCCCCCcccc
Q psy15742 316 HDS--------GKKGSFISLTGRQMFSPSQDMET 341 (342)
Q Consensus 316 ~~~--------~~~~~i~~i~~~~~fp~t~h~e~ 341 (342)
.++ ...|++..+.+.|+||+|+|+|+
T Consensus 501 ~lc~~~~~~~~~g~fr~~~~~~VDlfP~T~h~E~ 534 (534)
T KOG2187|consen 501 DLCSSPKYRLKKGFFRLVKAVGVDLFPHTPHCEM 534 (534)
T ss_pred HhhcCccccccccccceeeeeecccCCCCCcCCC
Confidence 333 23578999999999999999995
No 15
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.63 E-value=6.2e-15 Score=126.59 Aligned_cols=125 Identities=28% Similarity=0.433 Sum_probs=92.0
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh--CCE---------EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCC
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV--CQK---------VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSL 254 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~---------v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~ 254 (342)
.+++..|+|++||+|++.+++|.. ... ++|+|+++.+++.|+.|++..|+.+.+.+.+.|+.+++ ..+
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 346889999999999999999886 333 78999999999999999999999888999999999998 667
Q ss_pred CccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhh
Q psy15742 255 QGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDS 318 (342)
Q Consensus 255 ~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~ 318 (342)
.+|+|++||||+... ....+..++++. .+.++.+.+.+..++.++.+....+.....
T Consensus 106 ~~d~IvtnPPyG~r~--~~~~~~~~ly~~-----~~~~~~~~l~~~~v~l~~~~~~~~~~~~~~ 162 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRL--GSKKDLEKLYRQ-----FLRELKRVLKPRAVFLTTSNRELEKALGLK 162 (179)
T ss_dssp BSCEEEEE--STTSH--CHHHHHHHHHHH-----HHHHHHCHSTTCEEEEEESCCCHHHHHTST
T ss_pred CCCEEEECcchhhhc--cCHHHHHHHHHH-----HHHHHHHHCCCCEEEEEECCHHHHHHhcch
Confidence 899999999999763 222334455554 444555557777788888888887776653
No 16
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.61 E-value=4.5e-15 Score=131.65 Aligned_cols=141 Identities=16% Similarity=0.132 Sum_probs=102.0
Q ss_pred CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC---CCCccEEEEcCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---SLQGDVVFLSPP 264 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~---~~~~D~Ii~nPP 264 (342)
..+|||+|||+|.+++.+|++ ..+++|||+++++.+.|++|++.++++++++++++|+.++.+ ..+||+|+||||
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 679999999999999999987 389999999999999999999999999999999999998863 236999999999
Q ss_pred CCCCcccc---ccccccccCcCCCCchhhhHhhh-ccCCCc-eeecCCCCCHHHHHHhhCC-CcEEEEecccC
Q psy15742 265 WGGPEYAR---SSFSIDNIFPEQGGGRRLFQVAR-GISPNV-GYYLPRTSDVFEIFHDSGK-KGSFISLTGRQ 331 (342)
Q Consensus 265 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~l~~~~~~~~l~~~~~~-~~~i~~i~~~~ 331 (342)
|...+... ...++.+....+ ....++..+. .+.+++ +.++.+--+..++..++.. ++.+..++...
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~-~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V~ 196 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITL-DLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVY 196 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcC-CHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEEEec
Confidence 99876541 233333333321 1223343333 344444 4455666666666766655 55555555443
No 17
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.61 E-value=1.7e-15 Score=120.76 Aligned_cols=79 Identities=30% Similarity=0.518 Sum_probs=70.1
Q ss_pred CCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPPW 265 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nPP~ 265 (342)
|.+|||+|||+|.+++.+++.+ .+++|+|+|+.++++|+.|+..+++.++++++++|+.+.. +..+||+|++||||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 4589999999999999999987 9999999999999999999999999788999999998875 56799999999999
Q ss_pred CCC
Q psy15742 266 GGP 268 (342)
Q Consensus 266 ~~~ 268 (342)
...
T Consensus 81 ~~~ 83 (117)
T PF13659_consen 81 GPR 83 (117)
T ss_dssp TSB
T ss_pred ccc
Confidence 864
No 18
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.61 E-value=9.4e-15 Score=124.61 Aligned_cols=79 Identities=30% Similarity=0.519 Sum_probs=68.7
Q ss_pred CCCeEEeccCCCcHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 266 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~~--~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~ 266 (342)
++.+|||+|||+|.+++.+++.+. +|+++|+|+.+++.|++|++.+++++ ++++.+|+.+..+..+||+|++|||++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchh
Confidence 477999999999999999999843 59999999999999999999999964 999999999887778999999999976
Q ss_pred CC
Q psy15742 267 GP 268 (342)
Q Consensus 267 ~~ 268 (342)
..
T Consensus 110 ~~ 111 (170)
T PF05175_consen 110 AG 111 (170)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 19
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.59 E-value=5.1e-15 Score=138.06 Aligned_cols=151 Identities=23% Similarity=0.355 Sum_probs=108.7
Q ss_pred cccccCCccccccCHHHHHHHHHHHhhcccccccCCCCCCHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCC---
Q psy15742 136 EGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ--- 212 (342)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~--- 212 (342)
+|-.++.++|+..... ..+.+.++.......+|.. +..++|+.||+|++.+++|..+.
T Consensus 157 tG~sLhkRGyR~~~g~---ApLketLAaAil~lagw~~----------------~~pl~DPmCGSGTi~IEAAl~~~niA 217 (381)
T COG0116 157 TGDSLHKRGYRVYDGP---APLKETLAAAILLLAGWKP----------------DEPLLDPMCGSGTILIEAALIAANIA 217 (381)
T ss_pred CCcchhhccccccCCC---CCchHHHHHHHHHHcCCCC----------------CCccccCCCCccHHHHHHHHhccccC
Confidence 6678889999865432 2333333322222334443 67899999999999999998753
Q ss_pred --------------------------------------EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC-
Q psy15742 213 --------------------------------------KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS- 253 (342)
Q Consensus 213 --------------------------------------~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~- 253 (342)
.++|+|+|+.+++.|+.|++..|+.+.|+|.++|+.++.+.
T Consensus 218 Pg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~ 297 (381)
T COG0116 218 PGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL 297 (381)
T ss_pred CccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC
Confidence 37799999999999999999999999999999999998765
Q ss_pred CCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHH
Q psy15742 254 LQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVF 312 (342)
Q Consensus 254 ~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (342)
..+|+||+||||+.. ......+..+++. ....+.+.+.....+++..+-...
T Consensus 298 ~~~gvvI~NPPYGeR--lg~~~~v~~LY~~-----fg~~lk~~~~~ws~~v~tt~e~~~ 349 (381)
T COG0116 298 EEYGVVISNPPYGER--LGSEALVAKLYRE-----FGRTLKRLLAGWSRYVFTTSEDLL 349 (381)
T ss_pred CcCCEEEeCCCcchh--cCChhhHHHHHHH-----HHHHHHHHhcCCceEEEEccHHHH
Confidence 789999999999965 3333445556554 333444556666666664444433
No 20
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.58 E-value=3e-14 Score=135.41 Aligned_cols=93 Identities=24% Similarity=0.353 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-
Q psy15742 175 TPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA- 251 (342)
Q Consensus 175 ~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~- 251 (342)
.++.+++.+...++++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|++.++. +++++++|+.+..
T Consensus 237 eTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l 314 (423)
T PRK14966 237 ETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDM 314 (423)
T ss_pred cHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcccc
Confidence 347888888887777789999999999999999875 67999999999999999999998886 7999999997642
Q ss_pred -CCCCccEEEEcCCCCCCc
Q psy15742 252 -PSLQGDVVFLSPPWGGPE 269 (342)
Q Consensus 252 -~~~~~D~Ii~nPP~~~~~ 269 (342)
...+||+|++||||....
T Consensus 315 ~~~~~FDLIVSNPPYI~~~ 333 (423)
T PRK14966 315 PSEGKWDIIVSNPPYIENG 333 (423)
T ss_pred ccCCCccEEEECCCCCCcc
Confidence 245799999999998654
No 21
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=8.3e-15 Score=132.21 Aligned_cols=137 Identities=13% Similarity=0.176 Sum_probs=105.8
Q ss_pred ccCCCCCCChhhhcCcchhHHhhccchhhhccCcccccCCccccccCHHHHHHHHHHHhhcccccccCCCCCCHHHHHHH
Q psy15742 103 DLGDLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQH 182 (342)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~ 182 (342)
......++..+|+.++++++.|.++...++. .+|......+.+.....+ +.
T Consensus 13 ~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Ysc----------ayf~~~~~tL~eAQ~~k~-------------------~~ 63 (283)
T COG2230 13 KRRAAENIQAHYDLSNDFYRLFLDPSMTYSC----------AYFEDPDMTLEEAQRAKL-------------------DL 63 (283)
T ss_pred ccchhhhhhhHhhcchHHHHHhcCCCCceee----------EEeCCCCCChHHHHHHHH-------------------HH
Confidence 3455668889999999999999999887775 333222111111111111 23
Q ss_pred HHHh--cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEE
Q psy15742 183 IASR--CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVV 259 (342)
Q Consensus 183 i~~~--~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~I 259 (342)
+++. +++|.+|||+|||+|.+++++|+. +.+|+|+++|+++.+.+++.++..|++++++++..|..++.+ .||.|
T Consensus 64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e--~fDrI 141 (283)
T COG2230 64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE--PFDRI 141 (283)
T ss_pred HHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc--cccee
Confidence 3333 578999999999999999999998 899999999999999999999999998899999999999854 49999
Q ss_pred EEcCCCCCCcc
Q psy15742 260 FLSPPWGGPEY 270 (342)
Q Consensus 260 i~nPP~~~~~~ 270 (342)
++=-.|.....
T Consensus 142 vSvgmfEhvg~ 152 (283)
T COG2230 142 VSVGMFEHVGK 152 (283)
T ss_pred eehhhHHHhCc
Confidence 99777666543
No 22
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.2e-14 Score=122.14 Aligned_cols=75 Identities=29% Similarity=0.462 Sum_probs=68.2
Q ss_pred CCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP 268 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~ 268 (342)
|.+|+|+|||||.+++.++.. +.+|+|+|+|+++++.++.|+.+.+ +++.|+.+|+.++ .+.+|.+++||||+..
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~~--~~~~dtvimNPPFG~~ 121 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSDF--RGKFDTVIMNPPFGSQ 121 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhhc--CCccceEEECCCCccc
Confidence 678999999999999999987 5899999999999999999999843 5899999999988 5679999999999965
No 23
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.58 E-value=1.3e-14 Score=139.09 Aligned_cols=142 Identities=18% Similarity=0.188 Sum_probs=95.4
Q ss_pred CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccC-----CCCCccEEEE
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA-----PSLQGDVVFL 261 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~-----~~~~~D~Ii~ 261 (342)
++.+|||+|||||++++.++.. +.+|+++|+|+.+++.|++|++.||++ ++++++++|+.+++ ...+||+||+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 3789999999999999988776 459999999999999999999999985 47999999999875 2358999999
Q ss_pred cCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCC---CCHHH-------HHHhhCCCcEEEEecccC
Q psy15742 262 SPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRT---SDVFE-------IFHDSGKKGSFISLTGRQ 331 (342)
Q Consensus 262 nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~-------l~~~~~~~~~i~~i~~~~ 331 (342)
||||...+. .++...... -...+......+.+++.+++.++ ..... .+...++.++++....++
T Consensus 300 DPP~f~~~k----~~l~~~~~~--y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~~~~~~ 373 (396)
T PRK15128 300 DPPKFVENK----SQLMGACRG--YKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQA 373 (396)
T ss_pred CCCCCCCCh----HHHHHHHHH--HHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEEcCCC
Confidence 999854431 111111110 00022233445566666665333 22222 223345677777766554
Q ss_pred C-CCCC
Q psy15742 332 M-FSPS 336 (342)
Q Consensus 332 ~-fp~t 336 (342)
. ||..
T Consensus 374 ~DhP~~ 379 (396)
T PRK15128 374 ADHPVI 379 (396)
T ss_pred CCCCCC
Confidence 3 4433
No 24
>PHA03412 putative methyltransferase; Provisional
Probab=99.57 E-value=1.8e-14 Score=126.85 Aligned_cols=113 Identities=16% Similarity=0.302 Sum_probs=80.8
Q ss_pred CCeEEeccCCCcHHHHHHHHh-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV-----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP 264 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~-----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP 264 (342)
+.+|||+|||+|.+++.+++. ..+|+|+|+|+.++++|++|.. ++.++++|+.......+||+||+|||
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECCC
Confidence 669999999999999999874 3589999999999999998863 57899999987655568999999999
Q ss_pred CCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHH
Q psy15742 265 WGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVF 312 (342)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (342)
|......... .. .....-...++..+..+.+.+.+++|.++--+
T Consensus 124 Y~~~~~~d~~---ar-~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~ 167 (241)
T PHA03412 124 FGKIKTSDFK---GK-YTGAEFEYKVIERASQIARQGTFIIPQMSANF 167 (241)
T ss_pred CCCccccccC---Cc-ccccHHHHHHHHHHHHHcCCCEEEeCcccccC
Confidence 9975421110 00 00000112344444456777777888776444
No 25
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.2e-14 Score=133.17 Aligned_cols=91 Identities=27% Similarity=0.389 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCCCC-eEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC
Q psy15742 177 EKVAQHIASRCKASD-VVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS 253 (342)
Q Consensus 177 e~~~~~i~~~~~~~~-~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~ 253 (342)
+.+++.+........ +|||+|||||.+++.+|..+ .+|+|+|+|+.+++.|++|+..+|+ .++.++.+|+++....
T Consensus 97 e~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~ 175 (280)
T COG2890 97 ELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRG 175 (280)
T ss_pred HHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCC
Confidence 444454433332223 69999999999999999985 4999999999999999999999998 6788888898887655
Q ss_pred CCccEEEEcCCCCCCc
Q psy15742 254 LQGDVVFLSPPWGGPE 269 (342)
Q Consensus 254 ~~~D~Ii~nPP~~~~~ 269 (342)
+||+|++||||-..+
T Consensus 176 -~fDlIVsNPPYip~~ 190 (280)
T COG2890 176 -KFDLIVSNPPYIPAE 190 (280)
T ss_pred -ceeEEEeCCCCCCCc
Confidence 899999999999875
No 26
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.56 E-value=8.2e-14 Score=128.51 Aligned_cols=80 Identities=28% Similarity=0.434 Sum_probs=71.5
Q ss_pred CeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742 191 DVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP 268 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~ 268 (342)
.+|||+|||+|.+++.++.. ..+|+|+|+|+.+++.|++|++.+++.++++++++|+.+..+..+||+|++||||...
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 68999999999999999986 4699999999999999999999999866799999999876554589999999999876
Q ss_pred cc
Q psy15742 269 EY 270 (342)
Q Consensus 269 ~~ 270 (342)
+.
T Consensus 196 ~~ 197 (284)
T TIGR00536 196 ED 197 (284)
T ss_pred ch
Confidence 43
No 27
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.55 E-value=5.6e-14 Score=129.42 Aligned_cols=81 Identities=28% Similarity=0.448 Sum_probs=72.5
Q ss_pred CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 266 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~ 266 (342)
++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|++.+++.++++++++|+.+..+..+||+|++||||.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 3568999999999999999986 57999999999999999999999998778999999998765555899999999998
Q ss_pred CCc
Q psy15742 267 GPE 269 (342)
Q Consensus 267 ~~~ 269 (342)
..+
T Consensus 201 ~~~ 203 (284)
T TIGR03533 201 DAE 203 (284)
T ss_pred Ccc
Confidence 754
No 28
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.54 E-value=1.1e-13 Score=130.19 Aligned_cols=130 Identities=25% Similarity=0.378 Sum_probs=93.9
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEcCCC
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPPW 265 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nPP~ 265 (342)
++++.+|||+|||||++++.++..+.+++|+|+|+.|++.|+.|++.+|++ ++.++++|+.+.+. ...||+|++||||
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~-~i~~~~~D~~~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE-DFFVKRGDATKLPLSSESVDAIATDPPY 258 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC-CCeEEecchhcCCcccCCCCEEEECCCC
Confidence 567889999999999999999888999999999999999999999999986 48999999998763 4689999999999
Q ss_pred CCCccccccccccccCcCCCCchhhhHhhhccCCC--ceeecCCCCCHHHHHHhhCCCcEEEE
Q psy15742 266 GGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPN--VGYYLPRTSDVFEIFHDSGKKGSFIS 326 (342)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~l~~~~~~~~~i~~ 326 (342)
+....... .....+... .+.+..+.+.++ .++.+|.......+.+. .|+ +..
T Consensus 259 g~~~~~~~-~~~~~l~~~-----~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~~~--~g~-i~~ 312 (329)
T TIGR01177 259 GRSTTAAG-DGLESLYER-----SLEEFHEVLKSEGWIVYAVPTRIDLESLAED--AFR-VVK 312 (329)
T ss_pred cCcccccC-CchHHHHHH-----HHHHHHHHccCCcEEEEEEcCCCCHHHHHhh--cCc-chh
Confidence 87542211 001111121 333444555554 44555776666655444 345 443
No 29
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.53 E-value=1.4e-13 Score=136.13 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=72.4
Q ss_pred CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG 267 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~ 267 (342)
+.+|||+|||+|.+++.++.. +.+|+|+|+|+.+++.|+.|+..+++.++++++++|+.+..+..+||+|++||||..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 468999999999999999875 679999999999999999999999987789999999887655568999999999998
Q ss_pred Ccc
Q psy15742 268 PEY 270 (342)
Q Consensus 268 ~~~ 270 (342)
.+.
T Consensus 219 ~~~ 221 (506)
T PRK01544 219 HSE 221 (506)
T ss_pred chh
Confidence 654
No 30
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.53 E-value=2e-13 Score=126.98 Aligned_cols=79 Identities=28% Similarity=0.455 Sum_probs=71.6
Q ss_pred CeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742 191 DVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP 268 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~ 268 (342)
.+|||+|||+|.+++.++.. +.+|+|+|+|+.+++.|++|++.+++.++++++++|+.+..+..+||+|++||||.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 68999999999999999987 5799999999999999999999999876899999999876655689999999999876
Q ss_pred c
Q psy15742 269 E 269 (342)
Q Consensus 269 ~ 269 (342)
+
T Consensus 215 ~ 215 (307)
T PRK11805 215 E 215 (307)
T ss_pred c
Confidence 4
No 31
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.53 E-value=8e-14 Score=121.33 Aligned_cols=78 Identities=15% Similarity=0.306 Sum_probs=67.6
Q ss_pred CCCeEEeccCCCcHHHHHHHH-hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEEcCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAA-VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPPW 265 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~-~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~nPP~ 265 (342)
++.+|||+|||+|.+++.++. .+.+|+++|.++.+++.|++|++.+++. +++++++|+.++.+ ...||+|++||||
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 467999999999999997544 4689999999999999999999999984 79999999987652 3469999999998
Q ss_pred CC
Q psy15742 266 GG 267 (342)
Q Consensus 266 ~~ 267 (342)
..
T Consensus 132 ~~ 133 (199)
T PRK10909 132 RK 133 (199)
T ss_pred CC
Confidence 64
No 32
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.51 E-value=5.1e-14 Score=128.52 Aligned_cols=132 Identities=15% Similarity=0.212 Sum_probs=84.9
Q ss_pred CCCCCCChhhhcCcchhHHhhccchhhhccCcccccCCccccccCHHHHHHHHHHHhhcccccccCCCCCCHHHHHHHHH
Q psy15742 105 GDLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIA 184 (342)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~i~ 184 (342)
++..++..+|+.+++++..|.++...++. ++|....+.+.+.....+ +.++
T Consensus 5 ~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~----------~~~~~~~~~Le~AQ~~k~-------------------~~~~ 55 (273)
T PF02353_consen 5 QSRENISAHYDLGNDFYRLFLDPTMKYSC----------AYFDEGDDTLEEAQERKL-------------------DLLC 55 (273)
T ss_dssp --HHHHHHHHTS-HHHHTTTS-TT---S--------------SSTT--HHHHHHHHH-------------------HHHH
T ss_pred hHHHHHHHHcCCcHHHHHHhcCCCCCCCC----------eecCCchhhHHHHHHHHH-------------------HHHH
Confidence 34445667899999999999998776664 233222232323222222 3444
Q ss_pred Hh--cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742 185 SR--CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL 261 (342)
Q Consensus 185 ~~--~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~ 261 (342)
+. +++|.+|||+|||+|++++.+|+. |.+|+|+++|+++.+.|++.++..|+++++++..+|..++.. +||.|++
T Consensus 56 ~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--~fD~IvS 133 (273)
T PF02353_consen 56 EKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--KFDRIVS 133 (273)
T ss_dssp TTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEE
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC--CCCEEEE
Confidence 43 568999999999999999999998 999999999999999999999999998899999999998754 8999998
Q ss_pred cCCCCC
Q psy15742 262 SPPWGG 267 (342)
Q Consensus 262 nPP~~~ 267 (342)
=-.+.+
T Consensus 134 i~~~Eh 139 (273)
T PF02353_consen 134 IEMFEH 139 (273)
T ss_dssp ESEGGG
T ss_pred Eechhh
Confidence 544443
No 33
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.50 E-value=7.8e-14 Score=128.45 Aligned_cols=135 Identities=23% Similarity=0.332 Sum_probs=96.5
Q ss_pred hcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccccC-CCCCccEEEEcC
Q psy15742 186 RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG-DFFALA-PSLQGDVVFLSP 263 (342)
Q Consensus 186 ~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~-D~~~~~-~~~~~D~Ii~nP 263 (342)
.+++|+.|||++||||++.+++...|.+++|+|++..|++-|+.|++.++++ ...+... |+.+.+ ++..+|.|++||
T Consensus 194 ~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 194 RVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred ccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCCCCCccceEEecC
Confidence 4568999999999999999999999999999999999999999999999985 5656555 998887 334699999999
Q ss_pred CCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEEecc
Q psy15742 264 PWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTG 329 (342)
Q Consensus 264 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~ 329 (342)
||+..+..+ ...+.+++.. .+-.....+.+++.+.++...... ......++.+.....
T Consensus 273 PYGrst~~~-~~~l~~Ly~~-----~le~~~evLk~gG~~vf~~p~~~~--~~~~~~~f~v~~~~~ 330 (347)
T COG1041 273 PYGRSTKIK-GEGLDELYEE-----ALESASEVLKPGGRIVFAAPRDPR--HELEELGFKVLGRFT 330 (347)
T ss_pred CCCcccccc-cccHHHHHHH-----HHHHHHHHhhcCcEEEEecCCcch--hhHhhcCceEEEEEE
Confidence 999876433 2223444443 333444455555656554443222 223335666664443
No 34
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.48 E-value=3.4e-13 Score=106.46 Aligned_cols=75 Identities=33% Similarity=0.462 Sum_probs=67.0
Q ss_pred CCCeEEeccCCCcHHHHHHHH--hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc-cccCCCCCccEEEEcC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF-FALAPSLQGDVVFLSP 263 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~--~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~-~~~~~~~~~D~Ii~nP 263 (342)
|+.+|||+|||+|.+++.+++ .+.+|+|+|+|+.+++.|++++...+..++++++++|+ .......+||+|+++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 477999999999999999999 59999999999999999999997788778999999999 4444455799999976
No 35
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.48 E-value=1.5e-12 Score=111.98 Aligned_cols=142 Identities=18% Similarity=0.203 Sum_probs=93.9
Q ss_pred CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP 268 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~ 268 (342)
++.+|||+|||+|.++..++..+.+|+|+|+|+.+++.+++|++.+++ +++++.+|+.+... .+||+|++||||+..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGVR-GKFDVILFNPPYLPL 95 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccccC-CcccEEEECCCCCCC
Confidence 356899999999999999999877999999999999999999998887 68999999987654 489999999999865
Q ss_pred ccccccccccccCcC-CCCc-----hhhhHhhhccCCCceeec--CCCCCHHHHHHhh-CCCcEEEEecccCCC
Q psy15742 269 EYARSSFSIDNIFPE-QGGG-----RRLFQVARGISPNVGYYL--PRTSDVFEIFHDS-GKKGSFISLTGRQMF 333 (342)
Q Consensus 269 ~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~l--~~~~~~~~l~~~~-~~~~~i~~i~~~~~f 333 (342)
.......+..+.... ..++ ..+..+.+.+.+++.+.+ +......++...+ ..++.+..+....+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~ 169 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGLF 169 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeecC
Confidence 322111111011000 0011 123344455666665544 3333244444333 457777766655543
No 36
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.48 E-value=7.1e-13 Score=119.93 Aligned_cols=76 Identities=29% Similarity=0.434 Sum_probs=65.2
Q ss_pred CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC---CCCccEEEEcCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---SLQGDVVFLSPP 264 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~---~~~~D~Ii~nPP 264 (342)
+.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|++.++ ++++++|+.+..+ .++||+|++|||
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPP 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAP 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCC
Confidence 458999999999999999875 5699999999999999999998876 3789999887543 247999999999
Q ss_pred CCCCc
Q psy15742 265 WGGPE 269 (342)
Q Consensus 265 ~~~~~ 269 (342)
|...+
T Consensus 163 y~~~~ 167 (251)
T TIGR03704 163 YVPTD 167 (251)
T ss_pred CCCch
Confidence 98653
No 37
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2e-13 Score=124.31 Aligned_cols=142 Identities=18% Similarity=0.148 Sum_probs=101.8
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q psy15742 169 DGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 247 (342)
Q Consensus 169 ~~~~~~~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~ 247 (342)
++..++|+..+++++.++..+|.+|||+|||||.+++.+++. +.+|+|+|+||.+++.|++|++.|+++..++....+.
T Consensus 142 GTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~ 221 (300)
T COG2264 142 GTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLL 221 (300)
T ss_pred CCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccc
Confidence 677888999999999999999999999999999999999998 4569999999999999999999999964344445555
Q ss_pred cccCCCCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHH--HHHHhh-CCCcEE
Q psy15742 248 FALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVF--EIFHDS-GKKGSF 324 (342)
Q Consensus 248 ~~~~~~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~l~~~~-~~~~~i 324 (342)
...+...+||+|++|-= ... +.. ..-+....+.+++.+.++.-..-. .+.... ..++.+
T Consensus 222 ~~~~~~~~~DvIVANIL-A~v--------l~~---------La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v 283 (300)
T COG2264 222 LEVPENGPFDVIVANIL-AEV--------LVE---------LAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEV 283 (300)
T ss_pred hhhcccCcccEEEehhh-HHH--------HHH---------HHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeE
Confidence 55555579999999742 110 001 122345556666666665543322 222222 457776
Q ss_pred EEec
Q psy15742 325 ISLT 328 (342)
Q Consensus 325 ~~i~ 328 (342)
..+.
T Consensus 284 ~~~~ 287 (300)
T COG2264 284 VEVL 287 (300)
T ss_pred eEEE
Confidence 6543
No 38
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.47 E-value=3e-13 Score=117.14 Aligned_cols=80 Identities=13% Similarity=0.169 Sum_probs=69.9
Q ss_pred CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----C-CCccEEEEc
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----S-LQGDVVFLS 262 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----~-~~~D~Ii~n 262 (342)
++.+|||+|||+|.++++++.+| .+|+++|.++.+++.+++|++.+++.++++++++|+.++.. . ..||+|+.|
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 37799999999999999999985 58999999999999999999999987689999999977532 1 248999999
Q ss_pred CCCCCC
Q psy15742 263 PPWGGP 268 (342)
Q Consensus 263 PP~~~~ 268 (342)
|||...
T Consensus 129 PPy~~~ 134 (189)
T TIGR00095 129 PPFFNG 134 (189)
T ss_pred cCCCCC
Confidence 999753
No 39
>PRK14967 putative methyltransferase; Provisional
Probab=99.46 E-value=5.2e-13 Score=118.86 Aligned_cols=81 Identities=27% Similarity=0.321 Sum_probs=71.5
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW 265 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~ 265 (342)
+.++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.+++.|++|++.+++ +++++++|+.+..+..+||+|++||||
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~fD~Vi~npPy 111 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRPFDVVVSNPPY 111 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCCeeEEEECCCC
Confidence 3567899999999999999999875 4999999999999999999998887 689999999886666789999999999
Q ss_pred CCCc
Q psy15742 266 GGPE 269 (342)
Q Consensus 266 ~~~~ 269 (342)
....
T Consensus 112 ~~~~ 115 (223)
T PRK14967 112 VPAP 115 (223)
T ss_pred CCCC
Confidence 8653
No 40
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.44 E-value=5.6e-13 Score=126.48 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=70.1
Q ss_pred CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS--HKIQFIQGDFFALAPSLQGDVVFLSPPW 265 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~--~~i~~~~~D~~~~~~~~~~D~Ii~nPP~ 265 (342)
+.+|||+|||+|.+++.+++. ..+|+++|.|+.+++.|++|++.++.. .+++++.+|+.+..+..+||+|++||||
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPf 308 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF 308 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCc
Confidence 458999999999999999987 579999999999999999999988753 3789999999876555689999999999
Q ss_pred CCCc
Q psy15742 266 GGPE 269 (342)
Q Consensus 266 ~~~~ 269 (342)
+...
T Consensus 309 h~~~ 312 (378)
T PRK15001 309 HQQH 312 (378)
T ss_pred ccCc
Confidence 8653
No 41
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.44 E-value=3.8e-13 Score=115.68 Aligned_cols=81 Identities=23% Similarity=0.463 Sum_probs=65.5
Q ss_pred CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEEc
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLS 262 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~n 262 (342)
+|.+|||++||||.++++++.+ +.+|+.||.|+.++...++|++..++.++++++++|+.... ...+||+|++|
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 3789999999999999999887 57999999999999999999999998777999999987654 35689999999
Q ss_pred CCCCCCc
Q psy15742 263 PPWGGPE 269 (342)
Q Consensus 263 PP~~~~~ 269 (342)
|||....
T Consensus 122 PPY~~~~ 128 (183)
T PF03602_consen 122 PPYAKGL 128 (183)
T ss_dssp -STTSCH
T ss_pred CCcccch
Confidence 9998764
No 42
>PHA03411 putative methyltransferase; Provisional
Probab=99.44 E-value=6.1e-13 Score=119.78 Aligned_cols=75 Identities=21% Similarity=0.399 Sum_probs=65.7
Q ss_pred CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG 267 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~ 267 (342)
+.+|||+|||+|.+++.++.. +.+|+|+|+|+.+++.|++|+ .+++++++|+.++....+||+|++||||+.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESNEKFDVVISNPPFGK 138 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcccCCCcEEEEcCCccc
Confidence 568999999999999988775 579999999999999999874 268899999998876668999999999998
Q ss_pred Ccc
Q psy15742 268 PEY 270 (342)
Q Consensus 268 ~~~ 270 (342)
.+.
T Consensus 139 l~~ 141 (279)
T PHA03411 139 INT 141 (279)
T ss_pred cCc
Confidence 643
No 43
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.43 E-value=2.4e-12 Score=109.61 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=68.2
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEcCCCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPPWG 266 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nPP~~ 266 (342)
.++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.+++|+.. . ++++++++|+.++.. ...||.|++||||+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~-~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--A-DNLTVIHGDALKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--C-CCEEEEECchhcCCccccCCCEEEECCCcc
Confidence 3577999999999999999999888999999999999999999854 2 479999999998863 33699999999998
Q ss_pred CC
Q psy15742 267 GP 268 (342)
Q Consensus 267 ~~ 268 (342)
..
T Consensus 89 ~~ 90 (169)
T smart00650 89 IS 90 (169)
T ss_pred cH
Confidence 53
No 44
>KOG2904|consensus
Probab=99.43 E-value=1.3e-12 Score=115.40 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcC-----CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc-
Q psy15742 176 PEKVAQHIASRCK-----ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF- 247 (342)
Q Consensus 176 ~e~~~~~i~~~~~-----~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~- 247 (342)
+|+.++++...++ .+..++|+|||+|.+++.++.. -..|+++|.|+.++..|.+|++++++.+.+.+++-++
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me 209 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIME 209 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccc
Confidence 4677777666543 4568999999999999999886 5789999999999999999999999998898885543
Q ss_pred ---cccC--CCCCccEEEEcCCCCCCcccc-ccccccccCcC--CCCchhhhHh
Q psy15742 248 ---FALA--PSLQGDVVFLSPPWGGPEYAR-SSFSIDNIFPE--QGGGRRLFQV 293 (342)
Q Consensus 248 ---~~~~--~~~~~D~Ii~nPP~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~ 293 (342)
.+.. ..+++|++++||||...+... ....+..+.|. ++||....+.
T Consensus 210 ~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~ 263 (328)
T KOG2904|consen 210 SDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDN 263 (328)
T ss_pred cccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHH
Confidence 3322 346899999999999875533 22333344433 2445444433
No 45
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.42 E-value=5.8e-13 Score=127.09 Aligned_cols=124 Identities=21% Similarity=0.216 Sum_probs=94.8
Q ss_pred CCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEcCCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPPWG 266 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nPP~~ 266 (342)
+.+|||++||+|.+++.+|... .+|+++|+|+.+++.+++|++.|+++ +++++++|+..++. ...||+|++||| +
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~-G 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF-G 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC-C
Confidence 4689999999999999998863 48999999999999999999999984 67899999987664 467999999998 2
Q ss_pred CCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEEecccCCCCCCCc
Q psy15742 267 GPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQD 338 (342)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~~~~fp~t~h 338 (342)
... ..+-.......++.+++++ ..++..+.+. +....+.+.++||+...
T Consensus 136 s~~------------------~~l~~al~~~~~~gilyvS----AtD~~~L~g~-y~~~~~~~yd~fP~~~~ 184 (382)
T PRK04338 136 SPA------------------PFLDSAIRSVKRGGLLCVT----ATDTAPLCGA-YPKSCLRKYGAVPLKTE 184 (382)
T ss_pred CcH------------------HHHHHHHHHhcCCCEEEEE----ecCchhhcCC-ChHHHHHHhcCcccCCc
Confidence 211 0112223444555566553 4455566554 88999999999998653
No 46
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.41 E-value=2e-12 Score=116.89 Aligned_cols=79 Identities=28% Similarity=0.456 Sum_probs=71.2
Q ss_pred CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG 267 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~ 267 (342)
+.+|||+|||+|.++..++.. ..+++|+|+|+.+++.|+.|+..+++. +++++++|+.+..+..+||+|++||||..
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCCceeEEEECCCCCc
Confidence 458999999999999999986 679999999999999999999999984 79999999988666678999999999987
Q ss_pred Cc
Q psy15742 268 PE 269 (342)
Q Consensus 268 ~~ 269 (342)
.+
T Consensus 167 ~~ 168 (251)
T TIGR03534 167 EA 168 (251)
T ss_pred hh
Confidence 54
No 47
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.5e-12 Score=117.88 Aligned_cols=77 Identities=19% Similarity=0.344 Sum_probs=68.6
Q ss_pred CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG 267 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~ 267 (342)
+.+|+|+|||.|.+++.+|+. ..+++-+|+|..+++.|+.|+..|+++ +..++..|..+.... +||.|++||||+.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~v~~-kfd~IisNPPfh~ 236 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEPVEG-KFDLIISNPPFHA 236 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEecccccccc-cccEEEeCCCccC
Confidence 449999999999999999998 469999999999999999999999995 337888888877665 9999999999996
Q ss_pred C
Q psy15742 268 P 268 (342)
Q Consensus 268 ~ 268 (342)
.
T Consensus 237 G 237 (300)
T COG2813 237 G 237 (300)
T ss_pred C
Confidence 5
No 48
>KOG3420|consensus
Probab=99.40 E-value=6.2e-13 Score=106.55 Aligned_cols=79 Identities=30% Similarity=0.531 Sum_probs=70.1
Q ss_pred CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG 266 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~ 266 (342)
.|+.++|+|||+|.+++.++-. ...|+|+|+++++++.+++|+....+ ++.+.++|+.+.. ..+.||.+++||||+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecCCCC
Confidence 4789999999999999777765 67899999999999999999999888 6799999999876 446899999999999
Q ss_pred CCc
Q psy15742 267 GPE 269 (342)
Q Consensus 267 ~~~ 269 (342)
...
T Consensus 126 Tk~ 128 (185)
T KOG3420|consen 126 TKK 128 (185)
T ss_pred ccc
Confidence 763
No 49
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.39 E-value=1.1e-12 Score=120.57 Aligned_cols=93 Identities=27% Similarity=0.264 Sum_probs=74.1
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q psy15742 169 DGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 247 (342)
Q Consensus 169 ~~~~~~~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~ 247 (342)
+...++|+..+++.+.....+|.+|||+|||||.+++.+++. +.+|+|+|+|+.+++.|++|++.||+.+++.+. ..
T Consensus 141 GTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~ 218 (295)
T PF06325_consen 141 GTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LS 218 (295)
T ss_dssp -SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CT
T ss_pred cCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Ee
Confidence 455666788999999999999999999999999999999998 458999999999999999999999998766553 22
Q ss_pred cccCCCCCccEEEEcCC
Q psy15742 248 FALAPSLQGDVVFLSPP 264 (342)
Q Consensus 248 ~~~~~~~~~D~Ii~nPP 264 (342)
.+. ...+||+|++|--
T Consensus 219 ~~~-~~~~~dlvvANI~ 234 (295)
T PF06325_consen 219 EDL-VEGKFDLVVANIL 234 (295)
T ss_dssp SCT-CCS-EEEEEEES-
T ss_pred ccc-ccccCCEEEECCC
Confidence 222 2378999999744
No 50
>PRK14968 putative methyltransferase; Provisional
Probab=99.39 E-value=1.3e-11 Score=106.45 Aligned_cols=145 Identities=21% Similarity=0.240 Sum_probs=96.7
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEccccccCCCCCccEEEEcCCCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHK-IQFIQGDFFALAPSLQGDVVFLSPPWG 266 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~-i~~~~~D~~~~~~~~~~D~Ii~nPP~~ 266 (342)
.++.+|||+|||+|.++..++..+.+++|+|+|+.+++.+++|+..+++.++ +.++++|+.+......||+|++||||.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL 101 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence 4577999999999999999999899999999999999999999999887433 899999988766555899999999997
Q ss_pred CCcccccccc-ccccCcC-CCCc----hhhhHhhhccCCCceee--cCCCCCHHHHHHhh-CCCcEEEEecccCC
Q psy15742 267 GPEYARSSFS-IDNIFPE-QGGG----RRLFQVARGISPNVGYY--LPRTSDVFEIFHDS-GKKGSFISLTGRQM 332 (342)
Q Consensus 267 ~~~~~~~~~~-~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~--l~~~~~~~~l~~~~-~~~~~i~~i~~~~~ 332 (342)
.........+ ....... ..+. ..+..+.+.+.+++.++ .+.......+...+ ..++++..+....+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 176 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKF 176 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeeccc
Confidence 6431111000 0000000 0000 02344445555555433 24444555555554 34777776665544
No 51
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.39 E-value=5.1e-12 Score=108.69 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=65.7
Q ss_pred CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP 263 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP 263 (342)
+.+|||+|||+|.+++.++.. +.+|+|+|.|+.+++.+++|++.++++ +++++++|+.++....+||+|+++.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~~~~fD~I~s~~ 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQHEEQFDVITSRA 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccccCCccEEEehh
Confidence 779999999999999998875 468999999999999999999999984 6999999999876567899999985
No 52
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.38 E-value=1.4e-11 Score=113.60 Aligned_cols=81 Identities=25% Similarity=0.296 Sum_probs=72.3
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG 267 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~ 267 (342)
.++++|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++..++..++++++++|+.+... ..||.|++|+||..
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~~d~VvaNlPY~I 113 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFDVCVANVPYQI 113 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cccCEEEecCCccc
Confidence 45789999999999999999998889999999999999999999887755689999999988643 36899999999987
Q ss_pred Cc
Q psy15742 268 PE 269 (342)
Q Consensus 268 ~~ 269 (342)
.+
T Consensus 114 st 115 (294)
T PTZ00338 114 SS 115 (294)
T ss_pred Cc
Confidence 74
No 53
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.38 E-value=1.1e-12 Score=114.83 Aligned_cols=100 Identities=26% Similarity=0.223 Sum_probs=79.9
Q ss_pred CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC-CCccEEEEcCCCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-LQGDVVFLSPPWGG 267 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~-~~~D~Ii~nPP~~~ 267 (342)
+|.+|||+|||-|.++..+|+.|.+|+|+|+++.+++.|+..+...|+ ++++.+..+.++... ++||+|+|.---.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVlE- 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVLE- 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHHH-
Confidence 488999999999999999999999999999999999999999999998 588889888888644 7999999943222
Q ss_pred CccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742 268 PEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL 305 (342)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (342)
-.|+ ....+..|...+.|++..++
T Consensus 136 ------------Hv~d--p~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 136 ------------HVPD--PESFLRACAKLVKPGGILFL 159 (243)
T ss_pred ------------ccCC--HHHHHHHHHHHcCCCcEEEE
Confidence 2222 22355556666666666665
No 54
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.37 E-value=1.4e-11 Score=116.07 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=66.1
Q ss_pred CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG 267 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~ 267 (342)
..+|||+|||+|.+++.+++. ..+|+++|+|+.+++.|+.|++.+++ ..+++.+|+.... .++||+|++||||+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~~-~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSDI-KGRFDMIISNPPFHD 273 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEccccccc-CCCccEEEECCCccC
Confidence 458999999999999999987 46899999999999999999999998 4578888987654 468999999999985
No 55
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.36 E-value=6.4e-12 Score=106.74 Aligned_cols=78 Identities=21% Similarity=0.398 Sum_probs=70.3
Q ss_pred CCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCC--CccEEEEcCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSL--QGDVVFLSPP 264 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~--~~D~Ii~nPP 264 (342)
|.++||+++|||.++++++.+ +.+++.||.|..++...++|++..++..+.+++..|+..++ ... .||+|++|||
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP 123 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP 123 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC
Confidence 789999999999999999988 78999999999999999999999998789999999999664 222 4999999999
Q ss_pred CCC
Q psy15742 265 WGG 267 (342)
Q Consensus 265 ~~~ 267 (342)
|+.
T Consensus 124 y~~ 126 (187)
T COG0742 124 YAK 126 (187)
T ss_pred Ccc
Confidence 984
No 56
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.36 E-value=1.2e-11 Score=114.92 Aligned_cols=115 Identities=21% Similarity=0.193 Sum_probs=81.8
Q ss_pred HHHHHHhhcccccccCCCCCC-------H--HHHHHHHHHh--------cC--CCCeEEeccCCCcHHHHHHHHh--CCE
Q psy15742 155 QHIASRCKASDVVIDGWYSVT-------P--EKVAQHIASR--------CK--ASDVVIDGFCGCGGNTIQFAAV--CQK 213 (342)
Q Consensus 155 ~~i~~~~~~~~~~~~~~~~~~-------~--e~~~~~i~~~--------~~--~~~~vLDlgcGtG~~~~~~a~~--~~~ 213 (342)
..+...+...+|++..|.-+. | ..-+.++... ++ .+.++||+|||+|.+...++.. +.+
T Consensus 61 ~~LnkalL~~~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~ 140 (321)
T PRK11727 61 KALNKALLAHFYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWR 140 (321)
T ss_pred HHHHHHHHHHhcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCE
Confidence 345555555667777775432 1 2222333222 22 4579999999999888777664 789
Q ss_pred EEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEE-ccccccC-----CCCCccEEEEcCCCCCCc
Q psy15742 214 VISIDIDPAKLRLAQHNASVY-GVSHKIQFIQ-GDFFALA-----PSLQGDVVFLSPPWGGPE 269 (342)
Q Consensus 214 v~gvD~s~~~l~~a~~n~~~~-gl~~~i~~~~-~D~~~~~-----~~~~~D~Ii~nPP~~~~~ 269 (342)
++|+|+|+.+++.|+.|++.+ ++.++++++. .|..++. +...||+|+|||||....
T Consensus 141 ~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 141 FVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASA 203 (321)
T ss_pred EEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcc
Confidence 999999999999999999999 8988888864 3332221 345899999999999754
No 57
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.35 E-value=5.3e-12 Score=105.52 Aligned_cols=79 Identities=28% Similarity=0.405 Sum_probs=68.8
Q ss_pred CCCeEEeccCCCcHHHHHHHH-h--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccEEEEcC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAA-V--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSP 263 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~-~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~Ii~nP 263 (342)
++.+|||+|||+|.++..++. . +.+++|+|+|+.+++.|+.+++..+++ +++|+++|+.++... ..||+|++++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcC
Confidence 477999999999999999994 3 689999999999999999999999996 899999999996522 6899999998
Q ss_pred CCCCC
Q psy15742 264 PWGGP 268 (342)
Q Consensus 264 P~~~~ 268 (342)
+++..
T Consensus 82 ~l~~~ 86 (152)
T PF13847_consen 82 VLHHF 86 (152)
T ss_dssp TGGGT
T ss_pred chhhc
Confidence 87443
No 58
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.35 E-value=8.9e-12 Score=108.64 Aligned_cols=133 Identities=15% Similarity=0.073 Sum_probs=89.3
Q ss_pred CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCCc
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE 269 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~~ 269 (342)
+.+|||+|||+|.+++.+|+.+.+|+|+|+|+.+++.++++++.+++ ++++..+|+.......+||+|+++.+++..+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~~ 108 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNEDYDFIFSTVVFMFLQ 108 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCCCCEEEEecccccCC
Confidence 56999999999999999999999999999999999999999988887 4788888886554445799999999987553
Q ss_pred ccc---ccccccccCcCCCCch-hhhHhhhccC-CCceeecCCCCCHHHHHHhhCCCcEEEEec
Q psy15742 270 YAR---SSFSIDNIFPEQGGGR-RLFQVARGIS-PNVGYYLPRTSDVFEIFHDSGKKGSFISLT 328 (342)
Q Consensus 270 ~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~ 328 (342)
... ....+.+++++ ||. .+......-. +.. ...+......++...+. ++++....
T Consensus 109 ~~~~~~~l~~~~~~Lkp--gG~lli~~~~~~~~~~~~-~~~~~~~~~~el~~~f~-~~~~~~~~ 168 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRP--GGYNLIVAAMDTADYPCH-MPFSFTFKEDELRQYYA-DWELLKYN 168 (195)
T ss_pred HHHHHHHHHHHHHHhCC--CcEEEEEEecccCCCCCC-CCcCccCCHHHHHHHhC-CCeEEEee
Confidence 211 22233444544 443 3332221110 100 01122345666766654 46666554
No 59
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.35 E-value=1.6e-12 Score=133.64 Aligned_cols=80 Identities=30% Similarity=0.451 Sum_probs=70.0
Q ss_pred CCCeEEeccCCCcHHHHHHHHhC--------------------------------------------CEEEEEeCCHHHH
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVC--------------------------------------------QKVISIDIDPAKL 224 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~--------------------------------------------~~v~gvD~s~~~l 224 (342)
++..++|++||+|++.+++|..+ .+++|+|+|+.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46799999999999999998631 2689999999999
Q ss_pred HHHHHHHHHcCCCCcEEEEEccccccCCC---CCccEEEEcCCCCCC
Q psy15742 225 RLAQHNASVYGVSHKIQFIQGDFFALAPS---LQGDVVFLSPPWGGP 268 (342)
Q Consensus 225 ~~a~~n~~~~gl~~~i~~~~~D~~~~~~~---~~~D~Ii~nPP~~~~ 268 (342)
+.|+.|+..+|+.+.+++.++|+.+.... +++|+|++||||+..
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r 316 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGER 316 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCc
Confidence 99999999999987899999999887532 469999999999965
No 60
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.35 E-value=7.4e-12 Score=114.83 Aligned_cols=80 Identities=29% Similarity=0.476 Sum_probs=69.4
Q ss_pred CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 266 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~ 266 (342)
++.+|||+|||+|.+++.++.. ..+++|+|+|+.+++.|++|+. ++...+++++++|+.+..+..+||+|++||||.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 4679999999999999999987 4899999999999999999998 333458999999997765556899999999998
Q ss_pred CCc
Q psy15742 267 GPE 269 (342)
Q Consensus 267 ~~~ 269 (342)
..+
T Consensus 187 ~~~ 189 (275)
T PRK09328 187 PEA 189 (275)
T ss_pred Ccc
Confidence 754
No 61
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.35 E-value=8.8e-12 Score=108.85 Aligned_cols=79 Identities=16% Similarity=0.113 Sum_probs=69.4
Q ss_pred CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP 268 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~ 268 (342)
++.+|||+|||+|.++..+|+.+.+|+|+|+|+.+++.|++++...++. ++++..+|+.+.....+||+|+++-.++..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 108 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFDGEYDFILSTVVLMFL 108 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcCCCcCEEEEecchhhC
Confidence 3679999999999999999999999999999999999999999988884 689999999876545679999998776543
No 62
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.35 E-value=1.6e-11 Score=106.00 Aligned_cols=77 Identities=21% Similarity=0.181 Sum_probs=68.2
Q ss_pred HhcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742 185 SRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262 (342)
Q Consensus 185 ~~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n 262 (342)
..++++.+|||+|||+|..++.+++. +.+|+|+|.|+.+++.|++|++.++++ +++++++|+.+.....+||+|+++
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~ 119 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSR 119 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEc
Confidence 34556889999999999999999874 689999999999999999999999985 599999999887665689999996
No 63
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.35 E-value=8.4e-12 Score=113.87 Aligned_cols=85 Identities=19% Similarity=0.251 Sum_probs=73.0
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS 262 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n 262 (342)
.++|.+|||+|||+|+.+..++.. ...|+++|+++.+++.+++|++.+|+. +++++++|+..+. ....||.|++|
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCEEEEc
Confidence 456889999999999999999875 358999999999999999999999984 7999999987754 23469999999
Q ss_pred CCCCCCcccc
Q psy15742 263 PPWGGPEYAR 272 (342)
Q Consensus 263 PP~~~~~~~~ 272 (342)
||+.+.....
T Consensus 148 ~Pcsg~G~~~ 157 (264)
T TIGR00446 148 APCSGEGVIR 157 (264)
T ss_pred CCCCCCcccc
Confidence 9999875444
No 64
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=1.5e-11 Score=120.40 Aligned_cols=85 Identities=26% Similarity=0.402 Sum_probs=74.7
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP 263 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP 263 (342)
..+|.+|||+|||+|+.+..+++. +.+|+|+|+|+.+++.+++|++..|+. +++++++|+.++.+...||+|++||
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~fD~Vl~D~ 326 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQPDAILLDA 326 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCCCEEEEcC
Confidence 457889999999999999988874 468999999999999999999999984 7999999999877667899999999
Q ss_pred CCCCCcccc
Q psy15742 264 PWGGPEYAR 272 (342)
Q Consensus 264 P~~~~~~~~ 272 (342)
|+.+.....
T Consensus 327 Pcsg~g~~~ 335 (445)
T PRK14904 327 PCTGTGVLG 335 (445)
T ss_pred CCCCcchhh
Confidence 998875443
No 65
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.31 E-value=1e-11 Score=107.88 Aligned_cols=84 Identities=26% Similarity=0.425 Sum_probs=64.5
Q ss_pred hcCCCCeEEeccCCCcHHHHHHHH--hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742 186 RCKASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP 263 (342)
Q Consensus 186 ~~~~~~~vLDlgcGtG~~~~~~a~--~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP 263 (342)
.+++|..|+|++||.|.+++.+|+ .+..|+++|++|.+++++++|++.|++.+++..+++|+.++++...+|.|++|.
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l 177 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL 177 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--
T ss_pred cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC
Confidence 346789999999999999999999 588999999999999999999999999888999999999998778999999999
Q ss_pred CCCCCc
Q psy15742 264 PWGGPE 269 (342)
Q Consensus 264 P~~~~~ 269 (342)
|-....
T Consensus 178 p~~~~~ 183 (200)
T PF02475_consen 178 PESSLE 183 (200)
T ss_dssp TSSGGG
T ss_pred hHHHHH
Confidence 955443
No 66
>PLN02672 methionine S-methyltransferase
Probab=99.31 E-value=2.8e-11 Score=127.24 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=70.0
Q ss_pred CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCC---------------CcEEEEEccccccCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS---------------HKIQFIQGDFFALAP 252 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~---------------~~i~~~~~D~~~~~~ 252 (342)
+.+|+|+|||+|.+++.+++. ..+|+|+|+|+.+++.|++|++.|+++ ++++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999999999986 369999999999999999999987642 479999999988764
Q ss_pred C--CCccEEEEcCCCCCCcc
Q psy15742 253 S--LQGDVVFLSPPWGGPEY 270 (342)
Q Consensus 253 ~--~~~D~Ii~nPP~~~~~~ 270 (342)
. .+||+||+||||.....
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e 218 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPN 218 (1082)
T ss_pred ccCCceEEEEECCCcCCCcc
Confidence 3 36999999999997643
No 67
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.30 E-value=4.2e-11 Score=109.78 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=66.3
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC-CccEEEEcCCCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL-QGDVVFLSPPWG 266 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~-~~D~Ii~nPP~~ 266 (342)
.++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++.. ++++++++|+.++.... .+|.|++||||.
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQPLKVVANLPYN 116 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcCcceEEEeCCcc
Confidence 4578999999999999999999888999999999999999988742 47999999999875332 259999999997
Q ss_pred CC
Q psy15742 267 GP 268 (342)
Q Consensus 267 ~~ 268 (342)
..
T Consensus 117 is 118 (272)
T PRK00274 117 IT 118 (272)
T ss_pred ch
Confidence 75
No 68
>KOG3926|consensus
Probab=99.30 E-value=4.1e-12 Score=111.30 Aligned_cols=61 Identities=25% Similarity=0.234 Sum_probs=56.0
Q ss_pred hhhHhHHHHHHHHHhccccCccchhHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy15742 4 KKVLEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQDILITYKLSTLSGCAQKVLFNI 64 (342)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~~ 64 (342)
+..--|||+|+|++++|+|||||.|||+||||||+|+..|+.++++++++|+|++++-..+
T Consensus 94 rrFnyickllqliak~ql~sLsg~Aqknll~ile~v~~kv~ddqqn~~~irdL~q~l~~~l 154 (332)
T KOG3926|consen 94 RRFNYICKLLQLIAKSQLTSLSGSAQKNLLNILEKVVSKVLDDQQNPRLIRDLLQKLEHIL 154 (332)
T ss_pred HHHHHHHHHHHHHHHccCCCCchHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 4455699999999999999999999999999999999999999999999999999994433
No 69
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=5e-12 Score=112.22 Aligned_cols=79 Identities=29% Similarity=0.466 Sum_probs=70.0
Q ss_pred CCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW 265 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~ 265 (342)
+|.+|||+|||||-+++.+++.. .+|+|+|+|+.|++.|++.+...|..+ ++|+++|+.+++ ++.+||+|.+. |
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~--f 127 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTIS--F 127 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEee--e
Confidence 58999999999999999999984 899999999999999999999888754 999999999998 77899999993 4
Q ss_pred CCCcc
Q psy15742 266 GGPEY 270 (342)
Q Consensus 266 ~~~~~ 270 (342)
+-.+.
T Consensus 128 glrnv 132 (238)
T COG2226 128 GLRNV 132 (238)
T ss_pred hhhcC
Confidence 44443
No 70
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.29 E-value=4e-11 Score=110.80 Aligned_cols=92 Identities=25% Similarity=0.207 Sum_probs=75.9
Q ss_pred CCCCHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q psy15742 172 YSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250 (342)
Q Consensus 172 ~~~~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~ 250 (342)
.+++...+++.+.....++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.+++.|++|+..+++..++.+..+|....
T Consensus 142 ~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~ 221 (288)
T TIGR00406 142 THPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP 221 (288)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc
Confidence 4455666677777777788999999999999999998874 589999999999999999999999876788887774433
Q ss_pred CCCCCccEEEEcCC
Q psy15742 251 APSLQGDVVFLSPP 264 (342)
Q Consensus 251 ~~~~~~D~Ii~nPP 264 (342)
...+||+|++|..
T Consensus 222 -~~~~fDlVvan~~ 234 (288)
T TIGR00406 222 -IEGKADVIVANIL 234 (288)
T ss_pred -cCCCceEEEEecC
Confidence 3458999999865
No 71
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.29 E-value=7.6e-11 Score=107.25 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=67.6
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG 267 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~ 267 (342)
.++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++.. . ++++++++|+.+... ..||.|++||||..
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~-~~~d~Vv~NlPy~i 103 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDL-PEFNKVVSNLPYQI 103 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCc-hhceEEEEcCCccc
Confidence 4578999999999999999999988999999999999999998854 2 489999999998653 25899999999986
Q ss_pred C
Q psy15742 268 P 268 (342)
Q Consensus 268 ~ 268 (342)
.
T Consensus 104 ~ 104 (258)
T PRK14896 104 S 104 (258)
T ss_pred C
Confidence 4
No 72
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=2.9e-11 Score=117.63 Aligned_cols=86 Identities=23% Similarity=0.283 Sum_probs=74.7
Q ss_pred hcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEE
Q psy15742 186 RCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVF 260 (342)
Q Consensus 186 ~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii 260 (342)
...+|.+|||+|||+|+.+.+++.. +.+|+++|+|+.+++.+++|+++.|+. +++++++|+.++. ..++||.|+
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl 312 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRIL 312 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEE
Confidence 3457889999999999999999875 579999999999999999999999984 6999999998764 245799999
Q ss_pred EcCCCCCCcccc
Q psy15742 261 LSPPWGGPEYAR 272 (342)
Q Consensus 261 ~nPP~~~~~~~~ 272 (342)
+|||+.+.....
T Consensus 313 ~DaPCsg~G~~~ 324 (431)
T PRK14903 313 VDAPCTSLGTAR 324 (431)
T ss_pred ECCCCCCCcccc
Confidence 999998876544
No 73
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.27 E-value=5.7e-11 Score=104.76 Aligned_cols=143 Identities=17% Similarity=0.158 Sum_probs=92.2
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcC-----------CCCcEEEEEccccccCC--CC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYG-----------VSHKIQFIQGDFFALAP--SL 254 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~g-----------l~~~i~~~~~D~~~~~~--~~ 254 (342)
+++.+|||+|||.|..++.+|++|..|+|+|+|+.+++.+........ -..+++++++|++++.. ..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 357799999999999999999999999999999999998644221100 01368999999998763 35
Q ss_pred CccEEEEcCCCCCCcccc---ccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEEecccC
Q psy15742 255 QGDVVFLSPPWGGPEYAR---SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQ 331 (342)
Q Consensus 255 ~~D~Ii~nPP~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~~~ 331 (342)
.||.|+-.--+....... ....+.+++++ ||..++.+........ ---|...+..++..++.+.+.+..+....
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp--gG~~ll~~~~~~~~~~-~gpp~~~~~~eL~~~f~~~~~i~~~~~~~ 189 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPP--GARQLLITLDYDQSEM-AGPPFSVSPAEVEALYGGHYEIELLESRD 189 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCC--CCeEEEEEEEcCCCCC-CCcCCCCCHHHHHHHhcCCceEEEEeecc
Confidence 688887654443332111 22344555655 5543333222111110 00123466778888887788888887777
Q ss_pred CC
Q psy15742 332 MF 333 (342)
Q Consensus 332 ~f 333 (342)
.+
T Consensus 190 ~~ 191 (213)
T TIGR03840 190 VL 191 (213)
T ss_pred cc
Confidence 66
No 74
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.27 E-value=3.4e-11 Score=106.61 Aligned_cols=79 Identities=19% Similarity=0.142 Sum_probs=68.4
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEc
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLS 262 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~n 262 (342)
++++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|++|++.+|+ ++++++++|+.+..+ ..+||+|+++
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCCCEEEEc
Confidence 3468899999999999999999873 3599999999999999999999998 589999999987543 3589999999
Q ss_pred CCCC
Q psy15742 263 PPWG 266 (342)
Q Consensus 263 PP~~ 266 (342)
++..
T Consensus 154 ~~~~ 157 (215)
T TIGR00080 154 AAGP 157 (215)
T ss_pred CCcc
Confidence 8754
No 75
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.27 E-value=4.3e-11 Score=114.61 Aligned_cols=153 Identities=16% Similarity=0.127 Sum_probs=102.4
Q ss_pred ccccCCCCCCChhhhcCcchhHHhhccchhhhccCcccccCCccccccCHHHHHHHHHHHhhcccccccCCCCCCHHHHH
Q psy15742 101 QEDLGDLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVA 180 (342)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~ 180 (342)
.+..++..++..+|+..++++..|.++...++. ++|... +.+.......+
T Consensus 107 n~~~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~----------g~~~~~-~~L~~Aq~~k~------------------- 156 (383)
T PRK11705 107 QSKKRAWIVGKEHYDLGNDLFEAMLDPRMQYSC----------GYWKDA-DTLEEAQEAKL------------------- 156 (383)
T ss_pred CChhhHHHhhhhhcCCcHHHHHHhcCCCCcccc----------cccCCC-CCHHHHHHHHH-------------------
Confidence 445567778888999999999988887554443 222111 11111111111
Q ss_pred HHHHHh--cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCcc
Q psy15742 181 QHIASR--CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD 257 (342)
Q Consensus 181 ~~i~~~--~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D 257 (342)
+.+.+. ++++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|++++. ++ ++++..+|+.+. .++||
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l--~~~fD 230 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL--NGQFD 230 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc--CCCCC
Confidence 222222 357889999999999999999986 7899999999999999999984 44 588899998776 45899
Q ss_pred EEEEcCCCCCCccc---cccccccccCcCCCCchhhh
Q psy15742 258 VVFLSPPWGGPEYA---RSSFSIDNIFPEQGGGRRLF 291 (342)
Q Consensus 258 ~Ii~nPP~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 291 (342)
.|++...+...... .....+.+++++ ||..++
T Consensus 231 ~Ivs~~~~ehvg~~~~~~~l~~i~r~Lkp--GG~lvl 265 (383)
T PRK11705 231 RIVSVGMFEHVGPKNYRTYFEVVRRCLKP--DGLFLL 265 (383)
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCC--CcEEEE
Confidence 99998776654221 122334455655 454333
No 76
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.26 E-value=3.2e-11 Score=109.04 Aligned_cols=84 Identities=21% Similarity=0.271 Sum_probs=71.3
Q ss_pred HHhcCCCCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEE
Q psy15742 184 ASRCKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVV 259 (342)
Q Consensus 184 ~~~~~~~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~I 259 (342)
...++++.+|||+|||+|..+..+++. +.+++|+|+|+.|++.|++++..++...+++++++|+.+.+.. .+|+|
T Consensus 51 ~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~v 129 (247)
T PRK15451 51 ERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE-NASMV 129 (247)
T ss_pred HHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC-CCCEE
Confidence 344567889999999999999988872 5799999999999999999999888867899999999887543 59999
Q ss_pred EEcCCCCCC
Q psy15742 260 FLSPPWGGP 268 (342)
Q Consensus 260 i~nPP~~~~ 268 (342)
+++...+..
T Consensus 130 v~~~~l~~l 138 (247)
T PRK15451 130 VLNFTLQFL 138 (247)
T ss_pred ehhhHHHhC
Confidence 998776544
No 77
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.25 E-value=4.1e-11 Score=108.88 Aligned_cols=81 Identities=23% Similarity=0.269 Sum_probs=71.3
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEEcCCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPW 265 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~nPP~ 265 (342)
.++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...|+.++++++++|+.++. ...+||+|+++..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 3467999999999999999999999999999999999999999999988778999999998764 35689999998776
Q ss_pred CCC
Q psy15742 266 GGP 268 (342)
Q Consensus 266 ~~~ 268 (342)
+..
T Consensus 123 ~~~ 125 (255)
T PRK11036 123 EWV 125 (255)
T ss_pred Hhh
Confidence 543
No 78
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.25 E-value=2.2e-11 Score=113.60 Aligned_cols=147 Identities=15% Similarity=0.047 Sum_probs=96.9
Q ss_pred CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGG 267 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~~ 267 (342)
++.+|||+|||+|.++..+++.+.+|+|+|.++.+++.|+.++...+...+++++++|+.+++ ..++||+|++.--..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 467999999999999999998899999999999999999999877665558999999998875 4468999998544443
Q ss_pred Ccc-ccccccccccCcCCCCchhhhHhhh-----------------ccCCCceeecCCCCCHHHHHHhh-CCCcEEEEec
Q psy15742 268 PEY-ARSSFSIDNIFPEQGGGRRLFQVAR-----------------GISPNVGYYLPRTSDVFEIFHDS-GKKGSFISLT 328 (342)
Q Consensus 268 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~l~~~~-~~~~~i~~i~ 328 (342)
... ......+.+++++ ||..++.... ...+.......+-.+..++..++ ..|+++.++.
T Consensus 211 v~d~~~~L~~l~r~LkP--GG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 211 VANPAEFCKSLSALTIP--NGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred cCCHHHHHHHHHHHcCC--CcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 321 1133344455544 4443322111 00111111111223455666554 3578888887
Q ss_pred ccCCCCCCC
Q psy15742 329 GRQMFSPSQ 337 (342)
Q Consensus 329 ~~~~fp~t~ 337 (342)
+....|.+.
T Consensus 289 G~~~~p~~~ 297 (322)
T PLN02396 289 GFVYNPITG 297 (322)
T ss_pred eeEEcCcCC
Confidence 777666543
No 79
>PLN02244 tocopherol O-methyltransferase
Probab=99.25 E-value=3.6e-11 Score=113.65 Aligned_cols=80 Identities=25% Similarity=0.292 Sum_probs=70.4
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW 265 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~ 265 (342)
+++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..++.++++++++|+.+.+ ++++||+|++.-..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 45789999999999999999986 78999999999999999999999998778999999998875 55789999996554
Q ss_pred CC
Q psy15742 266 GG 267 (342)
Q Consensus 266 ~~ 267 (342)
.+
T Consensus 197 ~h 198 (340)
T PLN02244 197 EH 198 (340)
T ss_pred hc
Confidence 43
No 80
>KOG1271|consensus
Probab=99.24 E-value=1.9e-10 Score=95.93 Aligned_cols=136 Identities=21% Similarity=0.145 Sum_probs=91.4
Q ss_pred CCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG 266 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~ 266 (342)
..+|||+|||.|.+...+++.+ ...+|+|.|+.+++.|+..++..++++.|+|.+.|+.+.. ..++||+|.----|.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 3499999999999999999974 3489999999999999999999999877999999998743 334666655422222
Q ss_pred CCcccccccccc-ccCcCCCCchhhhHhhhccCC-CceeecCCCCCHHHHHHhhCC-CcEEEEecccCCC
Q psy15742 267 GPEYARSSFSID-NIFPEQGGGRRLFQVARGISP-NVGYYLPRTSDVFEIFHDSGK-KGSFISLTGRQMF 333 (342)
Q Consensus 267 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~l~~~~~~-~~~i~~i~~~~~f 333 (342)
..+..+....-+ .++- .. .-+.+++ +++...+.|++..++.+.+.. ++.+....|.+.|
T Consensus 148 AisLs~d~~~~r~~~Y~------d~--v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~~~tvp~ptF 209 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYL------DS--VEKLLSPGGIFVITSCNFTKDELVEEFENFNFEYLSTVPTPTF 209 (227)
T ss_pred eeecCCCCcccceeeeh------hh--HhhccCCCcEEEEEecCccHHHHHHHHhcCCeEEEEeeccceE
Confidence 222111000000 1111 11 1122334 444455999999999987654 4777777777654
No 81
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=8.9e-11 Score=114.58 Aligned_cols=85 Identities=22% Similarity=0.334 Sum_probs=73.2
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----CCCccE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----SLQGDV 258 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----~~~~D~ 258 (342)
.++|.+|||+|||+|+.+..+++. ..+|+++|+++.+++.+++|++.+|+. +++++++|+.+... .++||.
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCCE
Confidence 356889999999999999999886 358999999999999999999999995 69999999987641 357999
Q ss_pred EEEcCCCCCCcccc
Q psy15742 259 VFLSPPWGGPEYAR 272 (342)
Q Consensus 259 Ii~nPP~~~~~~~~ 272 (342)
|++|||+.+.....
T Consensus 329 Vl~DaPCSg~G~~~ 342 (434)
T PRK14901 329 ILLDAPCSGLGTLH 342 (434)
T ss_pred EEEeCCCCcccccc
Confidence 99999998864433
No 82
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=1e-10 Score=113.92 Aligned_cols=81 Identities=25% Similarity=0.374 Sum_probs=70.7
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFL 261 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~ 261 (342)
..+|.+|||+|||+|+.+..+++.+ .+|+|+|+|+.+++.+++|++.+|+ +++++++|+.+.. ...+||.|++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEEE
Confidence 4578899999999999999999873 5999999999999999999999998 4789999998753 2457999999
Q ss_pred cCCCCCCc
Q psy15742 262 SPPWGGPE 269 (342)
Q Consensus 262 nPP~~~~~ 269 (342)
|||+.+..
T Consensus 320 D~Pcs~~G 327 (427)
T PRK10901 320 DAPCSATG 327 (427)
T ss_pred CCCCCccc
Confidence 99998753
No 83
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.22 E-value=1.2e-10 Score=105.57 Aligned_cols=85 Identities=28% Similarity=0.401 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC
Q psy15742 173 SVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA 251 (342)
Q Consensus 173 ~~~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~ 251 (342)
+.++..+++.+.....++.+|||+|||+|.+++.+++.+. +|+|+|+|+.+++.|++|++.+++.+++.+..+|.
T Consensus 103 h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~---- 178 (250)
T PRK00517 103 HPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL---- 178 (250)
T ss_pred CHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC----
Confidence 3344556666666667789999999999999998888754 59999999999999999999999854555544432
Q ss_pred CCCCccEEEEcCC
Q psy15742 252 PSLQGDVVFLSPP 264 (342)
Q Consensus 252 ~~~~~D~Ii~nPP 264 (342)
+||+|++|..
T Consensus 179 ---~fD~Vvani~ 188 (250)
T PRK00517 179 ---KADVIVANIL 188 (250)
T ss_pred ---CcCEEEEcCc
Confidence 7999999854
No 84
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.22 E-value=1.2e-10 Score=113.56 Aligned_cols=90 Identities=20% Similarity=0.283 Sum_probs=72.9
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFL 261 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~ 261 (342)
..+|.+|||+|||+|+.+..+++. ..+|+|+|+++.+++.+++|++.+|+..++.+..+|..... +..+||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 356889999999999999999986 37999999999999999999999998534455778876543 3457999999
Q ss_pred cCCCCCCcccccccc
Q psy15742 262 SPPWGGPEYARSSFS 276 (342)
Q Consensus 262 nPP~~~~~~~~~~~~ 276 (342)
|||+.+.....+..+
T Consensus 316 DaPcSg~G~~~~~p~ 330 (426)
T TIGR00563 316 DAPCSATGVIRRHPD 330 (426)
T ss_pred cCCCCCCcccccCcc
Confidence 999998765443333
No 85
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=2.7e-10 Score=100.05 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=68.4
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP 263 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nP 263 (342)
+++.+|||+|||+|..+..+++. +.+|+|+|+++.+++.|++|+..+++.++++++.+|+.+.. ...+||+|+++-
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 150 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTA 150 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEcc
Confidence 45789999999999999988875 36999999999999999999999998667999999998754 345899999987
Q ss_pred CCC
Q psy15742 264 PWG 266 (342)
Q Consensus 264 P~~ 266 (342)
+..
T Consensus 151 ~~~ 153 (205)
T PRK13944 151 AAS 153 (205)
T ss_pred Ccc
Confidence 643
No 86
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.20 E-value=1.2e-10 Score=100.31 Aligned_cols=73 Identities=23% Similarity=0.252 Sum_probs=61.9
Q ss_pred CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP 264 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP 264 (342)
+.++||+|||.|..++++|+.|..|+++|.|+.+++.+++.++..++ +++..+.|+.+......||+|++.--
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~~~~~yD~I~st~v 103 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFDFPEEYDFIVSTVV 103 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS-TTTEEEEEEESS
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhccccCCcCEEEEEEE
Confidence 55999999999999999999999999999999999999999999998 59999999988876678999998533
No 87
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.20 E-value=9.4e-11 Score=108.33 Aligned_cols=77 Identities=19% Similarity=0.123 Sum_probs=68.3
Q ss_pred CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP 268 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~ 268 (342)
+.+|||+|||+|.+++.+++.|.+|+|+|+|+.+++.++++++.+++ ++++...|+.......+||+|++...++..
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhhhC
Confidence 45999999999999999999999999999999999999999999888 689999998776556689999998776544
No 88
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.18 E-value=2.9e-10 Score=96.16 Aligned_cols=75 Identities=31% Similarity=0.502 Sum_probs=68.1
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC-CccEEEEc
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL-QGDVVFLS 262 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~-~~D~Ii~n 262 (342)
+.++++++|+|||||++++++|.. ..+|+++|.++++++..++|+++.|+ +|++++.+|+.+.+++. ++|.||+.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~~~~daiFIG 109 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDLPSPDAIFIG 109 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCCCCCCEEEEC
Confidence 457899999999999999999954 68999999999999999999999997 69999999999987654 69999994
No 89
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.18 E-value=1.2e-10 Score=104.10 Aligned_cols=74 Identities=35% Similarity=0.509 Sum_probs=56.1
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS 262 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n 262 (342)
.+|.+|||+|||||.++..+++. ..+|+|+|+|+.|++.|++++...+.. +++++++|+.+++ ++++||+|++.
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~ 123 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCS 123 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHH
Confidence 35789999999999999999886 368999999999999999999988874 8999999999987 56799999983
No 90
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=2e-10 Score=112.52 Aligned_cols=83 Identities=28% Similarity=0.392 Sum_probs=72.2
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFL 261 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~ 261 (342)
.+++.+|||+|||+|+.++.+++. ..+|+|+|+++.+++.+++|++.+|+. +++++++|+.+... ...||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAEKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcccCCEEEE
Confidence 356789999999999999999875 468999999999999999999999985 59999999987642 257999999
Q ss_pred cCCCCCCcc
Q psy15742 262 SPPWGGPEY 270 (342)
Q Consensus 262 nPP~~~~~~ 270 (342)
|||+.+...
T Consensus 327 D~Pcsg~G~ 335 (444)
T PRK14902 327 DAPCSGLGV 335 (444)
T ss_pred cCCCCCCee
Confidence 999987643
No 91
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.16 E-value=2.7e-10 Score=101.11 Aligned_cols=73 Identities=25% Similarity=0.333 Sum_probs=65.4
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n 262 (342)
.++.+|||+|||+|.++..++..+.+|+|+|+|+.+++.|++++...+..+++++.++|+.+.. .+||+|++.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~ 126 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCM 126 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEh
Confidence 3578999999999999999998888999999999999999999988877568999999998765 689999874
No 92
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.14 E-value=4.4e-10 Score=100.43 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=68.8
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP 263 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nP 263 (342)
+++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++ ++++++++|+.+.+ ++.+||+|+++.
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCCCccEEEEec
Confidence 45789999999999999999875 36999999999999999999988887 58999999998865 456899999987
Q ss_pred CCCCC
Q psy15742 264 PWGGP 268 (342)
Q Consensus 264 P~~~~ 268 (342)
+++..
T Consensus 123 ~l~~~ 127 (231)
T TIGR02752 123 GLRNV 127 (231)
T ss_pred ccccC
Confidence 66543
No 93
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.14 E-value=9.7e-10 Score=95.08 Aligned_cols=75 Identities=25% Similarity=0.383 Sum_probs=64.4
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP 264 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP 264 (342)
.++.+|||+|||+|.+++.+++. ..+|+++|+|+.+++.|++|++.+++. +++++++|+.... ..+||+|+++..
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~~-~~~~D~v~~~~~ 106 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIEL-PGKADAIFIGGS 106 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhhc-CcCCCEEEECCC
Confidence 45789999999999999999986 469999999999999999999999884 7999999985433 357999999754
No 94
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.12 E-value=5.4e-10 Score=100.49 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=67.3
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n 262 (342)
.+++.+|||+|||+|..+..+++. +.+++|+|+|+.|++.|++++...+...+++++++|+.+.+.. .+|+|+++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~ 129 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILN 129 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeee
Confidence 356789999999999999999874 5789999999999999999998777655899999999887543 58999986
Q ss_pred CCCCC
Q psy15742 263 PPWGG 267 (342)
Q Consensus 263 PP~~~ 267 (342)
-..+.
T Consensus 130 ~~l~~ 134 (239)
T TIGR00740 130 FTLQF 134 (239)
T ss_pred cchhh
Confidence 65544
No 95
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.12 E-value=7.3e-10 Score=97.83 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=66.2
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS 262 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n 262 (342)
++++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++|++.+|+ ++++++++|+.... +...||+|+++
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCcCEEEEC
Confidence 356889999999999999998876 26999999999999999999999988 48999999987654 45689999986
Q ss_pred C
Q psy15742 263 P 263 (342)
Q Consensus 263 P 263 (342)
-
T Consensus 153 ~ 153 (212)
T PRK13942 153 A 153 (212)
T ss_pred C
Confidence 4
No 96
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.12 E-value=1.4e-09 Score=98.74 Aligned_cols=77 Identities=23% Similarity=0.282 Sum_probs=66.5
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCcc---EEEEcCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD---VVFLSPP 264 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D---~Ii~nPP 264 (342)
.++.+|||+|||+|.++..+++.+..|+++|+|+.+++.++.++.. .++++++++|+.+.+.. .+| .|++|+|
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~-~~d~~~~vvsNlP 103 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP-DFPKQLKVVSNLP 103 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-HcCCcceEEEcCC
Confidence 3578999999999999999999988899999999999999988753 24799999999887533 466 9999999
Q ss_pred CCCC
Q psy15742 265 WGGP 268 (342)
Q Consensus 265 ~~~~ 268 (342)
|+..
T Consensus 104 y~i~ 107 (253)
T TIGR00755 104 YNIS 107 (253)
T ss_pred hhhH
Confidence 9865
No 97
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.11 E-value=3.5e-10 Score=99.23 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=65.0
Q ss_pred HHhcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742 184 ASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL 261 (342)
Q Consensus 184 ~~~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~ 261 (342)
...++++.+|||+|||+|..+..+++. +.+++|+|+|+.+++.|+++.. ++.+.++|+.+..++++||+|++
T Consensus 38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~~~~~~sfD~V~~ 111 (204)
T TIGR03587 38 LNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFDPFKDNFFDLVLT 111 (204)
T ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccCCCCCCCEEEEEE
Confidence 334566789999999999999999886 6899999999999999998752 46788999888446679999999
Q ss_pred cCCCCCC
Q psy15742 262 SPPWGGP 268 (342)
Q Consensus 262 nPP~~~~ 268 (342)
+--..+.
T Consensus 112 ~~vL~hl 118 (204)
T TIGR03587 112 KGVLIHI 118 (204)
T ss_pred CChhhhC
Confidence 7665544
No 98
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.11 E-value=3.3e-10 Score=99.31 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=64.8
Q ss_pred CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc-cccC---CCCCccEEEEc
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF-FALA---PSLQGDVVFLS 262 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~-~~~~---~~~~~D~Ii~n 262 (342)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|+++++.+++ ++++++++|+ ..+. +.+.||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 3679999999999999999876 56899999999999999999999887 5799999999 4432 35689999997
Q ss_pred CC
Q psy15742 263 PP 264 (342)
Q Consensus 263 PP 264 (342)
.|
T Consensus 119 ~~ 120 (202)
T PRK00121 119 FP 120 (202)
T ss_pred CC
Confidence 55
No 99
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.11 E-value=1.9e-09 Score=86.15 Aligned_cols=76 Identities=33% Similarity=0.455 Sum_probs=64.7
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEEcC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSP 263 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~nP 263 (342)
+++.+|+|+|||+|.++..+++. +.+|+|+|+|+.+++.+++|++.+++. +++++.+|+.... ...+||+|+++.
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEEECC
Confidence 35679999999999999999986 468999999999999999999988874 7899999977533 235899999975
Q ss_pred C
Q psy15742 264 P 264 (342)
Q Consensus 264 P 264 (342)
+
T Consensus 97 ~ 97 (124)
T TIGR02469 97 S 97 (124)
T ss_pred c
Confidence 4
No 100
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.11 E-value=2.1e-10 Score=89.02 Aligned_cols=67 Identities=34% Similarity=0.453 Sum_probs=58.2
Q ss_pred EEeccCCCcHHHHHHHHhC-----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEE
Q psy15742 193 VIDGFCGCGGNTIQFAAVC-----QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFL 261 (342)
Q Consensus 193 vLDlgcGtG~~~~~~a~~~-----~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~ 261 (342)
|||+|||+|..+..+++.. .+++|+|+|+.|++.++++....+. +++++++|+.+++ ..++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999999874 8999999999999999999988776 7899999999876 4559999999
No 101
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.11 E-value=8.2e-10 Score=96.49 Aligned_cols=77 Identities=26% Similarity=0.440 Sum_probs=66.4
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFL 261 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~ 261 (342)
+.++.+|||+|||+|.+++.+++. +.+|+++|+++.+++.|++|++.+++.++++++++|+.+..+ ...||.|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 346889999999999999999874 468999999999999999999999966789999999987542 357999999
Q ss_pred cC
Q psy15742 262 SP 263 (342)
Q Consensus 262 nP 263 (342)
+.
T Consensus 118 ~~ 119 (198)
T PRK00377 118 GG 119 (198)
T ss_pred CC
Confidence 65
No 102
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.10 E-value=2.7e-10 Score=106.53 Aligned_cols=82 Identities=32% Similarity=0.541 Sum_probs=61.6
Q ss_pred CCCeEEeccCCCcHHHHHHHH---------hCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccccCC---CCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAA---------VCQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFALAP---SLQ 255 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~---------~~~~v~gvD~s~~~l~~a~~n~~~~gl~~-~i~~~~~D~~~~~~---~~~ 255 (342)
++.+|+|++||+|++.+.+.+ ....++|+|+++.++..|+.|+..+|... +..+..+|.+.... ...
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 125 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQK 125 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 467899999999999999876 25789999999999999999998887643 34688999876543 358
Q ss_pred ccEEEEcCCCCCCcc
Q psy15742 256 GDVVFLSPPWGGPEY 270 (342)
Q Consensus 256 ~D~Ii~nPP~~~~~~ 270 (342)
||+|++||||+...+
T Consensus 126 ~D~ii~NPPf~~~~~ 140 (311)
T PF02384_consen 126 FDVIIGNPPFGSKEW 140 (311)
T ss_dssp EEEEEEE--CTCES-
T ss_pred cccccCCCCcccccc
Confidence 999999999998733
No 103
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=2.1e-09 Score=96.38 Aligned_cols=79 Identities=19% Similarity=0.188 Sum_probs=69.7
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC--CccEEEEcCCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL--QGDVVFLSPPW 265 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~--~~D~Ii~nPP~ 265 (342)
.+++.|||+|+|.|.++..+++.+.+|+++|+|+.+++..++.... .++++++++|+.+..... .++.|++|.||
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~---~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY 105 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP---YDNLTVINGDALKFDFPSLAQPYKVVANLPY 105 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc---ccceEEEeCchhcCcchhhcCCCEEEEcCCC
Confidence 4578999999999999999999999999999999999999988752 258999999999886443 68999999999
Q ss_pred CCCc
Q psy15742 266 GGPE 269 (342)
Q Consensus 266 ~~~~ 269 (342)
...+
T Consensus 106 ~Iss 109 (259)
T COG0030 106 NISS 109 (259)
T ss_pred cccH
Confidence 8875
No 104
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.09 E-value=9.3e-10 Score=97.40 Aligned_cols=139 Identities=17% Similarity=0.155 Sum_probs=86.3
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCcEEEEEccccccCCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV--------------SHKIQFIQGDFFALAPS 253 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl--------------~~~i~~~~~D~~~~~~~ 253 (342)
+++.+|||+|||.|..++.+|..|.+|+|||+|+.+++.+.. .+++ ..++++.++|++++.+.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 346799999999999999999999999999999999998743 2222 24789999999988533
Q ss_pred --CCccEEEEcCCCCCCccc---cccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEEec
Q psy15742 254 --LQGDVVFLSPPWGGPEYA---RSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLT 328 (342)
Q Consensus 254 --~~~D~Ii~nPP~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~ 328 (342)
..||.|+----+...... .....+.+++++ ||..++..... .+...---|...+..++..++.+.+.+..+.
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p--gG~~~l~~~~~-~~~~~~gPp~~~~~~el~~~~~~~~~i~~~~ 189 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPA--GCRGLLVTLDY-PQEELAGPPFSVSDEEVEALYAGCFEIELLE 189 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC--CCeEEEEEEEe-CCccCCCCCCCCCHHHHHHHhcCCceEEEee
Confidence 478888843222221111 122334455554 43211111111 1111000133456777888876668887776
Q ss_pred ccCC
Q psy15742 329 GRQM 332 (342)
Q Consensus 329 ~~~~ 332 (342)
....
T Consensus 190 ~~~~ 193 (218)
T PRK13255 190 RQDV 193 (218)
T ss_pred eccc
Confidence 5543
No 105
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.09 E-value=3.7e-10 Score=102.94 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=64.4
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHHHH--cCCCCcEEEEEccccccC-CCCCccEEEE
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASV--YGVSHKIQFIQGDFFALA-PSLQGDVVFL 261 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~-~--~~v~gvD~s~~~l~~a~~n~~~--~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~ 261 (342)
+++.+|||+|||||.++..+++. + .+|+|+|+|++|++.|+++... .+..++++++++|+.+++ ++++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 45789999999999999999875 3 5899999999999999887642 222247999999999876 5568999999
Q ss_pred cCCCCC
Q psy15742 262 SPPWGG 267 (342)
Q Consensus 262 nPP~~~ 267 (342)
+--++.
T Consensus 152 ~~~l~~ 157 (261)
T PLN02233 152 GYGLRN 157 (261)
T ss_pred eccccc
Confidence 655443
No 106
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.09 E-value=6.4e-10 Score=100.72 Aligned_cols=74 Identities=19% Similarity=0.247 Sum_probs=62.6
Q ss_pred CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGG 267 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~~ 267 (342)
++.+|||+|||+|.++..++..+.+|+|+|+|+.+++.|+.+.. ...++++|+.+++ ++.+||+|+++.+++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLAVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence 36789999999999999998888999999999999999998753 3468899998865 4568999999988654
Q ss_pred C
Q psy15742 268 P 268 (342)
Q Consensus 268 ~ 268 (342)
.
T Consensus 116 ~ 116 (251)
T PRK10258 116 C 116 (251)
T ss_pred c
Confidence 3
No 107
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.08 E-value=1.4e-09 Score=95.98 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=67.8
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG 266 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~ 266 (342)
+++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|++|++.+++. +++++.+|..+.. ...+||+|+++.+..
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~I~~~~~~~ 155 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAYAPFDRILVTAAAP 155 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcCCCcCEEEEccCch
Confidence 45789999999999999988887679999999999999999999999884 6999999987654 346899999987654
No 108
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.08 E-value=7.1e-10 Score=99.33 Aligned_cols=86 Identities=20% Similarity=0.200 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--
Q psy15742 178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-- 252 (342)
Q Consensus 178 ~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-- 252 (342)
.++..+.+..+ +.+|||+|||+|..++.++.. +.+|+++|+++++++.|++|++.+|+.++++++.+|+.+.++
T Consensus 58 ~~L~~l~~~~~-~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 58 LFLSMLVKIMN-AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQL 136 (234)
T ss_pred HHHHHHHHHhC-CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence 34444444443 669999999999998888775 569999999999999999999999998899999999987642
Q ss_pred -----CCCccEEEEcCC
Q psy15742 253 -----SLQGDVVFLSPP 264 (342)
Q Consensus 253 -----~~~~D~Ii~nPP 264 (342)
..+||+|++|.+
T Consensus 137 ~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 137 LNNDPKPEFDFAFVDAD 153 (234)
T ss_pred HhCCCCCCCCEEEECCC
Confidence 358999999965
No 109
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.07 E-value=5e-10 Score=101.71 Aligned_cols=73 Identities=22% Similarity=0.223 Sum_probs=63.6
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW 265 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~ 265 (342)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++ +++++++|+.++.+.++||+|+++..+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~fD~v~~~~~l 99 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDTDVVVSNAAL 99 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCceEEEEehhh
Confidence 35789999999999999999987 67999999999999999763 468999999887666799999999988
Q ss_pred CCC
Q psy15742 266 GGP 268 (342)
Q Consensus 266 ~~~ 268 (342)
+..
T Consensus 100 ~~~ 102 (255)
T PRK14103 100 QWV 102 (255)
T ss_pred hhC
Confidence 765
No 110
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.07 E-value=4.8e-10 Score=104.30 Aligned_cols=84 Identities=27% Similarity=0.407 Sum_probs=75.3
Q ss_pred HHHhcCCCCeEEeccCCCcHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC-CCccEEE
Q psy15742 183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-LQGDVVF 260 (342)
Q Consensus 183 i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~-v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~-~~~D~Ii 260 (342)
+.....+|.+|+|++||.|.+++.+|+.+.. |+++|+||.+++..++|++.|++.+.+..+++|+.+..+. +.+|-|+
T Consensus 182 va~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 182 VAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred HHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEE
Confidence 3444566999999999999999999998655 9999999999999999999999987799999999999866 7899999
Q ss_pred EcCCCC
Q psy15742 261 LSPPWG 266 (342)
Q Consensus 261 ~nPP~~ 266 (342)
++-|..
T Consensus 262 m~~p~~ 267 (341)
T COG2520 262 MGLPKS 267 (341)
T ss_pred eCCCCc
Confidence 998854
No 111
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.07 E-value=7.7e-10 Score=100.58 Aligned_cols=75 Identities=24% Similarity=0.338 Sum_probs=65.5
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW 265 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~ 265 (342)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++. .+++++.+|+.++.+..+||+|+++..+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~fD~v~~~~~l 103 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQALDLIFANASL 103 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCCccEEEEccCh
Confidence 45789999999999999999986 679999999999999999875 2688999999887666799999999888
Q ss_pred CCC
Q psy15742 266 GGP 268 (342)
Q Consensus 266 ~~~ 268 (342)
+..
T Consensus 104 ~~~ 106 (258)
T PRK01683 104 QWL 106 (258)
T ss_pred hhC
Confidence 755
No 112
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.07 E-value=5e-10 Score=96.01 Aligned_cols=100 Identities=23% Similarity=0.296 Sum_probs=80.1
Q ss_pred CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG 267 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~ 267 (342)
..+|.|+|||+|..+..++++ +..++|+|.|++|++.|+..+ .+++|..+|+.++.+....|++++|--++
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p~~~~dllfaNAvlq- 103 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKPEQPTDLLFANAVLQ- 103 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCCCCccchhhhhhhhh-
Confidence 568999999999999999998 889999999999999997765 37999999999999888999999986654
Q ss_pred CccccccccccccCcCCCCchhhhHhhhccCCCceeec--CCCCC
Q psy15742 268 PEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL--PRTSD 310 (342)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ 310 (342)
|+|+ ....+-.....+.+++++-+ |.|..
T Consensus 104 ------------Wlpd--H~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 104 ------------WLPD--HPELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred ------------hccc--cHHHHHHHHHhhCCCceEEEECCCccC
Confidence 3343 34455556666677666655 66553
No 113
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.07 E-value=7.9e-10 Score=94.13 Aligned_cols=74 Identities=28% Similarity=0.313 Sum_probs=62.2
Q ss_pred HHHHHhcCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCc
Q psy15742 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQG 256 (342)
Q Consensus 181 ~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~ 256 (342)
+.|.+.+++|.+|||+|||.|.+...+... +...+|+|+|++.+..|..+ | +.++++|+.+-+ ++.+|
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~d~sF 76 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFPDQSF 76 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCCCCCc
Confidence 456667788999999999999999999875 88999999999998777654 4 569999998765 56799
Q ss_pred cEEEEc
Q psy15742 257 DVVFLS 262 (342)
Q Consensus 257 D~Ii~n 262 (342)
|.||++
T Consensus 77 D~VIls 82 (193)
T PF07021_consen 77 DYVILS 82 (193)
T ss_pred cEEehH
Confidence 999994
No 114
>PLN02476 O-methyltransferase
Probab=99.05 E-value=4.6e-10 Score=102.09 Aligned_cols=88 Identities=17% Similarity=0.165 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-
Q psy15742 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP- 252 (342)
Q Consensus 177 e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~- 252 (342)
..++..+.+..+ +++|||+|||+|..++++|+. +.+|+++|.++++.+.|++|++.+|+.++++++.+|+.+.++
T Consensus 107 g~lL~~L~~~~~-ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~ 185 (278)
T PLN02476 107 AQLLAMLVQILG-AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKS 185 (278)
T ss_pred HHHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence 345555555554 569999999999999999985 467999999999999999999999998899999999987642
Q ss_pred ------CCCccEEEEcCCC
Q psy15742 253 ------SLQGDVVFLSPPW 265 (342)
Q Consensus 253 ------~~~~D~Ii~nPP~ 265 (342)
.++||+||+|++-
T Consensus 186 l~~~~~~~~FD~VFIDa~K 204 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDADK 204 (278)
T ss_pred HHhcccCCCCCEEEECCCH
Confidence 2589999999983
No 115
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.04 E-value=7.5e-10 Score=96.40 Aligned_cols=110 Identities=20% Similarity=0.200 Sum_probs=80.6
Q ss_pred CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEEEcC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSP 263 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii~nP 263 (342)
+.++||+|||+|.++..+|+. ..+++|+|+++.+++.|+.++...++. +++++++|+.+.+ +.+.+|.|++|+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 568999999999999999987 678999999999999999999999884 8999999998653 345899999997
Q ss_pred CCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCC
Q psy15742 264 PWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPR 307 (342)
Q Consensus 264 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (342)
|-.... ......++.. ...+..+.+.+.+++.+++..
T Consensus 96 pdpw~k---~~h~~~r~~~----~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 96 PDPWPK---KRHNKRRITQ----PHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCcCCC---CCccccccCC----HHHHHHHHHHhCCCCEEEEEe
Confidence 521110 0001111111 114555677777777776633
No 116
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.04 E-value=1.4e-09 Score=101.29 Aligned_cols=74 Identities=27% Similarity=0.167 Sum_probs=62.3
Q ss_pred CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV----SHKIQFIQGDFFALAPSLQGDVVFLSPP 264 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl----~~~i~~~~~D~~~~~~~~~~D~Ii~nPP 264 (342)
++.+|||+|||+|.+++.+++.+.+|+|+|+|+.|++.|++|+...+. ..+++|..+|+.++ +++||+|++.-.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEcCE
Confidence 467999999999999999999999999999999999999999876532 13678999998665 468999987533
No 117
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.03 E-value=8e-10 Score=100.83 Aligned_cols=78 Identities=21% Similarity=0.214 Sum_probs=64.9
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCC
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP 264 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP 264 (342)
++++.+|||+|||+|..+..++.. +.+|+|+|+|+.+++.|+++... .+++.++++|+.+.+ ++.+||+|++...
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~ 126 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMIYSRDA 126 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEEEEhhh
Confidence 457889999999999999999875 77999999999999999998753 247999999998764 4568999999655
Q ss_pred CCC
Q psy15742 265 WGG 267 (342)
Q Consensus 265 ~~~ 267 (342)
+.+
T Consensus 127 l~h 129 (263)
T PTZ00098 127 ILH 129 (263)
T ss_pred HHh
Confidence 433
No 118
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.2e-09 Score=90.49 Aligned_cols=75 Identities=20% Similarity=0.174 Sum_probs=68.1
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS 262 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n 262 (342)
++++.+|||+|||+|+.+.-+|+.+.+|+++|..++..+.|++|++..|.. |+.++++|...-. +..+||.|+..
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~aPyD~I~Vt 145 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEEAPYDRIIVT 145 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCCCCcCEEEEe
Confidence 457999999999999999999999779999999999999999999999995 6999999988765 44799999985
No 119
>KOG1270|consensus
Probab=99.00 E-value=1.6e-10 Score=101.92 Aligned_cols=76 Identities=20% Similarity=0.196 Sum_probs=61.2
Q ss_pred CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEEccccccCCCCCccEEEEcCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH-----KIQFIQGDFFALAPSLQGDVVFLSPP 264 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~-----~i~~~~~D~~~~~~~~~~D~Ii~nPP 264 (342)
|.+|||+|||+|.++..+|+.|..|+|||.++.+++.|++........+ ++++.+.|+.... +.||.|+|.--
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHHH
Confidence 5789999999999999999999999999999999999999955443322 3667777777663 35999999544
Q ss_pred CCC
Q psy15742 265 WGG 267 (342)
Q Consensus 265 ~~~ 267 (342)
+.+
T Consensus 168 leH 170 (282)
T KOG1270|consen 168 LEH 170 (282)
T ss_pred HHH
Confidence 443
No 120
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.00 E-value=3.6e-09 Score=97.00 Aligned_cols=80 Identities=28% Similarity=0.268 Sum_probs=67.8
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS 262 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~-~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n 262 (342)
++++.+|||+|||+|..++.+++. + .+|+|+|+++.+++.|++|....++ ++++++.+|+.+++ +++.||+|+++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEc
Confidence 456889999999999988877765 3 4799999999999999999998888 48999999998765 45689999998
Q ss_pred CCCCC
Q psy15742 263 PPWGG 267 (342)
Q Consensus 263 PP~~~ 267 (342)
--++.
T Consensus 154 ~v~~~ 158 (272)
T PRK11873 154 CVINL 158 (272)
T ss_pred CcccC
Confidence 65543
No 121
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.00 E-value=1.1e-09 Score=108.20 Aligned_cols=80 Identities=24% Similarity=0.287 Sum_probs=67.2
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCC
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP 264 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP 264 (342)
++++.+|||+|||+|..++.+++. +.+|+|+|+|+.+++.|++|.. +...+++|+++|+.+.+ ++++||+|++.-.
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~ 341 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSRDT 341 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEECCc
Confidence 456789999999999999999886 7899999999999999999876 33347999999998765 4568999999765
Q ss_pred CCCC
Q psy15742 265 WGGP 268 (342)
Q Consensus 265 ~~~~ 268 (342)
+...
T Consensus 342 l~h~ 345 (475)
T PLN02336 342 ILHI 345 (475)
T ss_pred cccc
Confidence 5443
No 122
>KOG3191|consensus
Probab=98.99 E-value=3.1e-09 Score=88.80 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=72.4
Q ss_pred CCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 266 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~ 266 (342)
..-++|+|||+|..+-++++. .....++|+||.+++...+.++.|+. +++.++.|...-...++.|+++.||||-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEECCCcC
Confidence 567999999999999999986 45678999999999999999999998 7899999999888778999999999999
Q ss_pred CCcccc
Q psy15742 267 GPEYAR 272 (342)
Q Consensus 267 ~~~~~~ 272 (342)
..+..+
T Consensus 122 pt~~~~ 127 (209)
T KOG3191|consen 122 PTSDEE 127 (209)
T ss_pred cCCccc
Confidence 876543
No 123
>PRK05785 hypothetical protein; Provisional
Probab=98.99 E-value=2.1e-09 Score=95.90 Aligned_cols=70 Identities=24% Similarity=0.230 Sum_probs=58.3
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW 265 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~ 265 (342)
.++.+|||+|||||.++..+++. +.+|+|+|+|++|++.|+.+. .++++|+.+++ ++++||+|++.-..
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~~d~sfD~v~~~~~l 120 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPFRDKSFDVVMSSFAL 120 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCCCCCCEEEEEecChh
Confidence 44779999999999999999987 689999999999999998641 35788988876 56789999996544
Q ss_pred C
Q psy15742 266 G 266 (342)
Q Consensus 266 ~ 266 (342)
+
T Consensus 121 ~ 121 (226)
T PRK05785 121 H 121 (226)
T ss_pred h
Confidence 3
No 124
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.99 E-value=7.8e-10 Score=98.33 Aligned_cols=75 Identities=20% Similarity=0.218 Sum_probs=65.3
Q ss_pred eEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742 192 VVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 266 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~ 266 (342)
+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|+.++...|+.++++++.+|+.+.+..++||+|++.-.++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHH
Confidence 6999999999999999886 47899999999999999999999998888999999997655445899999854443
No 125
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.98 E-value=3.4e-09 Score=94.45 Aligned_cols=76 Identities=26% Similarity=0.299 Sum_probs=65.1
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW 265 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~ 265 (342)
.++.+|||+|||+|.++..+++.+..|+|+|+|+.+++.|+++....+..+++++..+|+.. ..+.||+|++.-.+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l 137 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchh
Confidence 35679999999999999999988888999999999999999999888875689999999533 24679999986554
No 126
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.96 E-value=7.3e-09 Score=90.30 Aligned_cols=75 Identities=21% Similarity=0.302 Sum_probs=62.1
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEEcC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSP 263 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~nP 263 (342)
+++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|++.+++ ++++++.+|+.+..+ ...+|.++++.
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 35789999999999999999865 57999999999999999999999998 479999999875321 12467777753
No 127
>PRK10742 putative methyltransferase; Provisional
Probab=98.96 E-value=3.6e-09 Score=93.98 Aligned_cols=82 Identities=21% Similarity=0.336 Sum_probs=71.0
Q ss_pred CCCC--eEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc------C--CCCcEEEEEccccccCC--CCC
Q psy15742 188 KASD--VVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY------G--VSHKIQFIQGDFFALAP--SLQ 255 (342)
Q Consensus 188 ~~~~--~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~------g--l~~~i~~~~~D~~~~~~--~~~ 255 (342)
++|. +|||+++|+|..++.++..|+.|+++|.|+......++|++.. + +..+++++++|..+++. ...
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~ 164 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPR 164 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCC
Confidence 4555 8999999999999999999989999999999999999999884 2 22479999999998863 237
Q ss_pred ccEEEEcCCCCCCc
Q psy15742 256 GDVVFLSPPWGGPE 269 (342)
Q Consensus 256 ~D~Ii~nPP~~~~~ 269 (342)
||+|++||||....
T Consensus 165 fDVVYlDPMfp~~~ 178 (250)
T PRK10742 165 PQVVYLDPMFPHKQ 178 (250)
T ss_pred CcEEEECCCCCCCc
Confidence 99999999999864
No 128
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.96 E-value=2e-09 Score=81.55 Aligned_cols=69 Identities=30% Similarity=0.320 Sum_probs=56.9
Q ss_pred EeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742 194 IDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG 266 (342)
Q Consensus 194 LDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~ 266 (342)
||+|||+|..+..+++. +.+++|+|+|+.+++.++++.... ++.++++|+.+++ ++++||+|++.--++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCcccccccccccccccee
Confidence 79999999999999999 999999999999999999988654 4569999999987 667999999964443
No 129
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.95 E-value=4.5e-09 Score=99.65 Aligned_cols=74 Identities=19% Similarity=0.252 Sum_probs=66.6
Q ss_pred CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---CCCCCccEEEEcCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGDVVFLSPP 264 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~---~~~~~~D~Ii~nPP 264 (342)
+..+||+|||+|.+++.+|+. ...++|+|+++.+++.|.+++..+|+. ++.++++|+..+ .+++++|.|+++.|
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 568999999999999999987 679999999999999999999999984 799999998654 36679999999876
No 130
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.95 E-value=3e-09 Score=93.11 Aligned_cols=75 Identities=27% Similarity=0.388 Sum_probs=66.1
Q ss_pred CCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-------CCCccEE
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-------SLQGDVV 259 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-------~~~~D~I 259 (342)
..+||++|||+|..++++|+. +.+|+++|.+++..+.|++|++..|+.++++++.+|+.+.++ .++||+|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 569999999999999999985 679999999999999999999999998899999999987642 2479999
Q ss_pred EEcCC
Q psy15742 260 FLSPP 264 (342)
Q Consensus 260 i~nPP 264 (342)
|+|-.
T Consensus 126 FiDa~ 130 (205)
T PF01596_consen 126 FIDAD 130 (205)
T ss_dssp EEEST
T ss_pred EEccc
Confidence 99865
No 131
>PRK04457 spermidine synthase; Provisional
Probab=98.95 E-value=8.4e-09 Score=93.97 Aligned_cols=107 Identities=10% Similarity=0.138 Sum_probs=78.3
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEEcC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSP 263 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~nP 263 (342)
+++.+|||+|||+|.++..+++. +.+++++|+|+.+++.|++++...+..++++++.+|+.++.. ..+||+|++|.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 34678999999999999999876 678999999999999999998766554689999999987652 34799999984
Q ss_pred CCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742 264 PWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL 305 (342)
Q Consensus 264 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (342)
|....... .+. ....+..+...+.+++++.+
T Consensus 145 -~~~~~~~~------~l~----t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 145 -FDGEGIID------ALC----TQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred -CCCCCCcc------ccC----cHHHHHHHHHhcCCCcEEEE
Confidence 33221110 011 01244556666777777765
No 132
>PRK00811 spermidine synthase; Provisional
Probab=98.92 E-value=8.1e-09 Score=95.15 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=64.4
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC--C--CCcEEEEEccccccCC--CCCccEE
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V--SHKIQFIQGDFFALAP--SLQGDVV 259 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~g--l--~~~i~~~~~D~~~~~~--~~~~D~I 259 (342)
+++.+||++|||+|..+..+++. ..+|++||+|+.+++.|++++...+ . +++++++.+|+.++.. .++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45679999999999999999886 4689999999999999999986532 2 3589999999988763 4689999
Q ss_pred EEcC
Q psy15742 260 FLSP 263 (342)
Q Consensus 260 i~nP 263 (342)
++|.
T Consensus 155 i~D~ 158 (283)
T PRK00811 155 IVDS 158 (283)
T ss_pred EECC
Confidence 9984
No 133
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=4.8e-09 Score=92.75 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=71.6
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP 263 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP 263 (342)
+.+|.+|+|.|.|+|.++.++|.. -.+|+++|+.++.++.|++|++..|+.+++++..+|+.+......||.||+|-
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDm 171 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDL 171 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcC
Confidence 567999999999999999999974 36999999999999999999999999877999999999887666999999998
Q ss_pred C
Q psy15742 264 P 264 (342)
Q Consensus 264 P 264 (342)
|
T Consensus 172 p 172 (256)
T COG2519 172 P 172 (256)
T ss_pred C
Confidence 8
No 134
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.91 E-value=3.6e-09 Score=99.21 Aligned_cols=102 Identities=16% Similarity=0.131 Sum_probs=70.8
Q ss_pred CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG 267 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~ 267 (342)
+|.+|||+|||+|.++..++..+ ..|+|+|.|+.++..++......+...++.++.+|+.+++....||+|++.--.++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~H 201 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYH 201 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhhc
Confidence 47899999999999999999874 57999999999987655443333333479999999988876678999998533322
Q ss_pred C-ccccccccccccCcCCCCchhhhH
Q psy15742 268 P-EYARSSFSIDNIFPEQGGGRRLFQ 292 (342)
Q Consensus 268 ~-~~~~~~~~~~~~~~~~~~~~~~~~ 292 (342)
. +.......+.+.+++ ||..+++
T Consensus 202 ~~dp~~~L~~l~~~Lkp--GG~lvl~ 225 (322)
T PRK15068 202 RRSPLDHLKQLKDQLVP--GGELVLE 225 (322)
T ss_pred cCCHHHHHHHHHHhcCC--CcEEEEE
Confidence 2 222233334455544 4544443
No 135
>PRK04266 fibrillarin; Provisional
Probab=98.90 E-value=2.5e-08 Score=88.70 Aligned_cols=75 Identities=16% Similarity=0.094 Sum_probs=61.4
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVF 260 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii 260 (342)
++++.+|||+|||+|.++..+++. ...|+|+|+++.|++.+.++++.. .++.++.+|+.+.. ...+||+|+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D~i~ 146 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVDVIY 146 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCCEEE
Confidence 357889999999999999999987 368999999999999888887653 37899999987521 124699999
Q ss_pred EcCC
Q psy15742 261 LSPP 264 (342)
Q Consensus 261 ~nPP 264 (342)
+|-+
T Consensus 147 ~d~~ 150 (226)
T PRK04266 147 QDVA 150 (226)
T ss_pred ECCC
Confidence 8755
No 136
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.90 E-value=1e-08 Score=89.92 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=63.8
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS 262 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~-~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n 262 (342)
+++|.+|||+|||||..+..++.. + .+|+++|.++...+.|++|++..+.. ++.++++|..... ...+||.|+++
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~~apfD~I~v~ 148 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPEEAPFDRIIVT 148 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGGG-SEEEEEES
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccccCCCcCEEEEe
Confidence 567999999999999999999986 3 47999999999999999999999984 8999999987654 44689999997
Q ss_pred CCC
Q psy15742 263 PPW 265 (342)
Q Consensus 263 PP~ 265 (342)
...
T Consensus 149 ~a~ 151 (209)
T PF01135_consen 149 AAV 151 (209)
T ss_dssp SBB
T ss_pred ecc
Confidence 654
No 137
>PRK06922 hypothetical protein; Provisional
Probab=98.89 E-value=5e-09 Score=104.47 Aligned_cols=77 Identities=18% Similarity=0.181 Sum_probs=66.0
Q ss_pred CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSP 263 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nP 263 (342)
++.+|||+|||+|.++..+++. +.+++|+|+|+.|++.|+.+....+. ++.++++|+.+++ ++++||+|++++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEEEch
Confidence 5779999999999999888875 67999999999999999998876654 6889999998754 456899999998
Q ss_pred CCCC
Q psy15742 264 PWGG 267 (342)
Q Consensus 264 P~~~ 267 (342)
+++.
T Consensus 496 vLH~ 499 (677)
T PRK06922 496 ILHE 499 (677)
T ss_pred HHHh
Confidence 8764
No 138
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.89 E-value=1.6e-08 Score=98.91 Aligned_cols=86 Identities=22% Similarity=0.272 Sum_probs=73.7
Q ss_pred hcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEE
Q psy15742 186 RCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVF 260 (342)
Q Consensus 186 ~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii 260 (342)
..++|.+|||+|||.|+-+.++|.. ...++++|+++..++..++|+++.|+. ++.+.+.|...+. ....||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEE
Confidence 3467899999999999999999885 358999999999999999999999994 7899999987653 234799999
Q ss_pred EcCCCCCCcccc
Q psy15742 261 LSPPWGGPEYAR 272 (342)
Q Consensus 261 ~nPP~~~~~~~~ 272 (342)
+|+|+++.....
T Consensus 189 vDaPCSG~G~~r 200 (470)
T PRK11933 189 LDAPCSGEGTVR 200 (470)
T ss_pred EcCCCCCCcccc
Confidence 999999875444
No 139
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.89 E-value=1.1e-08 Score=89.08 Aligned_cols=80 Identities=23% Similarity=0.190 Sum_probs=63.0
Q ss_pred HHHHhcCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---CCCCCcc
Q psy15742 182 HIASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGD 257 (342)
Q Consensus 182 ~i~~~~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~---~~~~~~D 257 (342)
.+...++++.+|||+|||+|.++..+++. +..++|+|+|+.+++.|+.+ +++++++|+.+. .++.+||
T Consensus 6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD 77 (194)
T TIGR02081 6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFD 77 (194)
T ss_pred HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcC
Confidence 34445567889999999999999988765 66889999999999888642 467888888752 2356899
Q ss_pred EEEEcCCCCCCc
Q psy15742 258 VVFLSPPWGGPE 269 (342)
Q Consensus 258 ~Ii~nPP~~~~~ 269 (342)
+|+++.+++...
T Consensus 78 ~Vi~~~~l~~~~ 89 (194)
T TIGR02081 78 YVILSQTLQATR 89 (194)
T ss_pred EEEEhhHhHcCc
Confidence 999998887653
No 140
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.88 E-value=1.5e-08 Score=94.68 Aligned_cols=74 Identities=23% Similarity=0.317 Sum_probs=64.4
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEc
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLS 262 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~n 262 (342)
+++.+|||+|||+|.++..+++.. ..|+|+|+++++++.|++|++.+|+ +++.++++|+.+..+ ...||+|+++
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEEEC
Confidence 457899999999999999999863 3699999999999999999999998 479999999876643 3579999996
No 141
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.87 E-value=5.2e-09 Score=89.39 Aligned_cols=70 Identities=26% Similarity=0.445 Sum_probs=56.2
Q ss_pred CeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742 191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP 263 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP 263 (342)
.++||+|||.|.++..+|..+.+++++|+|+.+++.|++++. +. ++++++++|+.+..+.++||+|++.-
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~--~~-~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA--GL-PHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT--T--SSEEEEES-TTT---SS-EEEEEEES
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC--CC-CCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 589999999999999999999999999999999999999987 33 48999999999988889999999853
No 142
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.86 E-value=1.7e-08 Score=96.16 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=66.1
Q ss_pred CeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccEEEEcCCC
Q psy15742 191 DVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSPPW 265 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~Ii~nPP~ 265 (342)
-+|||++||+|..++.+++. ..+|+++|+|+.+++.+++|++.|++. +++++++|+..++.. .+||+|++|| |
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 48999999999999999986 378999999999999999999999984 789999999987642 5799999999 5
Q ss_pred C
Q psy15742 266 G 266 (342)
Q Consensus 266 ~ 266 (342)
+
T Consensus 124 G 124 (374)
T TIGR00308 124 G 124 (374)
T ss_pred C
Confidence 4
No 143
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.85 E-value=1e-08 Score=102.61 Aligned_cols=80 Identities=21% Similarity=0.262 Sum_probs=62.4
Q ss_pred CCeEEeccCCCcHHHHHHHHhC----------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc----C--CC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVC----------QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL----A--PS 253 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~----------~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~----~--~~ 253 (342)
+.+|+|++||+|.+.+.++... ..++|+|+++.++..|+.|+...+. ..+.+.+.|.... . ..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeeccccccccccccccc
Confidence 4589999999999999987641 5789999999999999999987762 2456666665432 1 12
Q ss_pred CCccEEEEcCCCCCCcc
Q psy15742 254 LQGDVVFLSPPWGGPEY 270 (342)
Q Consensus 254 ~~~D~Ii~nPP~~~~~~ 270 (342)
+.||+|+.||||+....
T Consensus 111 ~~fD~IIgNPPy~~~k~ 127 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKP 127 (524)
T ss_pred CcccEEEeCCCccccCc
Confidence 47999999999998643
No 144
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.85 E-value=1.3e-08 Score=90.36 Aligned_cols=77 Identities=23% Similarity=0.157 Sum_probs=66.0
Q ss_pred CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccEEEEcCCCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSPPWGG 267 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~Ii~nPP~~~ 267 (342)
+.+|||+|||+|.++..+++.+.+++|+|.++.+++.++.++...+.. ++++..+|+.+++.. .+||+|+++-.++.
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 679999999999999999888888999999999999999999887763 689999998877533 68999999765544
No 145
>KOG2671|consensus
Probab=98.85 E-value=2.3e-09 Score=97.74 Aligned_cols=85 Identities=31% Similarity=0.441 Sum_probs=72.0
Q ss_pred HhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHH-------HHHHHHHHcCCCC-cEEEEEccccccC--CCC
Q psy15742 185 SRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR-------LAQHNASVYGVSH-KIQFIQGDFFALA--PSL 254 (342)
Q Consensus 185 ~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~-------~a~~n~~~~gl~~-~i~~~~~D~~~~~--~~~ 254 (342)
+.+++|+-|+|++.|||++.+.+|..|..|+|.|+|-.+++ -.+.|++.+|..+ -+.++.+|..+.+ .+.
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~ 283 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNL 283 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcc
Confidence 45678999999999999999999999999999999999887 3578889999643 3567888887765 455
Q ss_pred CccEEEEcCCCCCCc
Q psy15742 255 QGDVVFLSPPWGGPE 269 (342)
Q Consensus 255 ~~D~Ii~nPP~~~~~ 269 (342)
.||.|+|||||+...
T Consensus 284 ~fDaIvcDPPYGVRe 298 (421)
T KOG2671|consen 284 KFDAIVCDPPYGVRE 298 (421)
T ss_pred eeeEEEeCCCcchhh
Confidence 899999999999764
No 146
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.84 E-value=2.2e-08 Score=88.15 Aligned_cols=125 Identities=18% Similarity=0.103 Sum_probs=77.1
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---------CCCC
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---------APSL 254 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~---------~~~~ 254 (342)
++++.+|||+|||+|.++..+++. ...|+|+|+++ + +.. .+++++++|+.+. ....
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCCChHHHHHHHHHhCCC
Confidence 456889999999999999999886 25899999998 1 123 3689999999874 2456
Q ss_pred CccEEEEcC-CCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec--CCCCCHHHHHHhhCCCcEEEEec
Q psy15742 255 QGDVVFLSP-PWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL--PRTSDVFEIFHDSGKKGSFISLT 328 (342)
Q Consensus 255 ~~D~Ii~nP-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~l~~~~~~~~~i~~i~ 328 (342)
.||+|++|+ |....+. ..+.....-. ....+..+.+.+.+++.+++ .......++...+...+.-.++.
T Consensus 117 ~~D~V~S~~~~~~~g~~---~~d~~~~~~~--~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~ 188 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTP---AVDIPRAMYL--VELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVR 188 (209)
T ss_pred CCCEEecCCCCccCCCh---HHHHHHHHHH--HHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEE
Confidence 899999986 3221110 0111000000 01134445556666665554 44445555566655566555543
No 147
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.84 E-value=2.1e-08 Score=88.73 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=87.9
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH-c------CC----CCcEEEEEccccccCCC--C
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASV-Y------GV----SHKIQFIQGDFFALAPS--L 254 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~-~------gl----~~~i~~~~~D~~~~~~~--~ 254 (342)
+++.+||.+|||.|.....+|..|.+|+|+|+|+.+++.+.+.... . +. .+++++.++|++++.+. +
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 4567999999999999999999999999999999999998432221 1 10 24689999999998644 3
Q ss_pred CccEEEEcCCCCCCcccc---ccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEEecccC
Q psy15742 255 QGDVVFLSPPWGGPEYAR---SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQ 331 (342)
Q Consensus 255 ~~D~Ii~nPP~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~~~ 331 (342)
+||+|+=---+.-..... ....+..++++ |+..++-... ......--=|-.....++..++.+++++..+...+
T Consensus 116 ~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p--~g~~lLi~l~-~~~~~~~GPPf~v~~~ev~~l~~~~f~i~~l~~~~ 192 (218)
T PF05724_consen 116 KFDLIYDRTFLCALPPEMRERYAQQLASLLKP--GGRGLLITLE-YPQGEMEGPPFSVTEEEVRELFGPGFEIEELEEED 192 (218)
T ss_dssp SEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE--EEEEEEEEEE-S-CSCSSSSS----HHHHHHHHTTTEEEEEEEEEE
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHHhCC--CCcEEEEEEE-cCCcCCCCcCCCCCHHHHHHHhcCCcEEEEEeccc
Confidence 799998643333221111 22233445544 3331111111 11100001133556788889999999999888877
Q ss_pred CCCC
Q psy15742 332 MFSP 335 (342)
Q Consensus 332 ~fp~ 335 (342)
..+.
T Consensus 193 ~~~~ 196 (218)
T PF05724_consen 193 SIEE 196 (218)
T ss_dssp -TTT
T ss_pred cccc
Confidence 6655
No 148
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.83 E-value=1.1e-08 Score=91.35 Aligned_cols=75 Identities=29% Similarity=0.455 Sum_probs=64.9
Q ss_pred CCCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP 263 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nP 263 (342)
++.+|||+|||+|.++..++..+ .+++|+|+++.+++.+++++..++...++.++.+|+.+.+ +.+.||+|+++-
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence 46799999999999999998874 8999999999999999999987766567999999998865 345899999853
No 149
>PLN03075 nicotianamine synthase; Provisional
Probab=98.83 E-value=4.2e-08 Score=89.91 Aligned_cols=77 Identities=23% Similarity=0.185 Sum_probs=62.2
Q ss_pred CCCeEEeccCCCcHH-HHHHHH-h--CCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccccccCC-CCCccEEEEc
Q psy15742 189 ASDVVIDGFCGCGGN-TIQFAA-V--CQKVISIDIDPAKLRLAQHNASV-YGVSHKIQFIQGDFFALAP-SLQGDVVFLS 262 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~-~~~~a~-~--~~~v~gvD~s~~~l~~a~~n~~~-~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~n 262 (342)
++++|+|+|||.|.+ ++.++. . +.+++|+|+|+++++.|++++.. .++.++++|..+|+.+... ...||+|+++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 478999999997744 444443 2 56899999999999999999964 7887789999999998653 3689999998
Q ss_pred CCCC
Q psy15742 263 PPWG 266 (342)
Q Consensus 263 PP~~ 266 (342)
--+
T Consensus 203 -ALi 205 (296)
T PLN03075 203 -ALV 205 (296)
T ss_pred -ccc
Confidence 433
No 150
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.82 E-value=2.8e-08 Score=92.53 Aligned_cols=101 Identities=12% Similarity=0.035 Sum_probs=70.4
Q ss_pred CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG 267 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~ 267 (342)
+|++|||+|||+|.++..++..+ ..|+|+|.|+.++..++...+..+...++.+..+++.+++....||+|++.--..+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLYH 200 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhhc
Confidence 57899999999999999988775 57999999999997765433332323478889999988876568999998754433
Q ss_pred C-ccccccccccccCcCCCCchhhh
Q psy15742 268 P-EYARSSFSIDNIFPEQGGGRRLF 291 (342)
Q Consensus 268 ~-~~~~~~~~~~~~~~~~~~~~~~~ 291 (342)
. +.......+.+.+++ ||..++
T Consensus 201 ~~dp~~~L~el~r~Lkp--GG~Lvl 223 (314)
T TIGR00452 201 RKSPLEHLKQLKHQLVI--KGELVL 223 (314)
T ss_pred cCCHHHHHHHHHHhcCC--CCEEEE
Confidence 3 222233444555655 454443
No 151
>PRK01581 speE spermidine synthase; Validated
Probab=98.80 E-value=4.2e-08 Score=92.01 Aligned_cols=119 Identities=15% Similarity=0.147 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHH--H---HcCC-CCcEEEEEcccc
Q psy15742 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNA--S---VYGV-SHKIQFIQGDFF 248 (342)
Q Consensus 177 e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~--~---~~gl-~~~i~~~~~D~~ 248 (342)
|.++.-.......+.+||++|||+|..+..+.+. ..+|++||+|+++++.|+... . ...+ +++++++.+|+.
T Consensus 138 E~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~ 217 (374)
T PRK01581 138 EALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAK 217 (374)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHH
Confidence 4444544444556679999999999999888886 379999999999999999631 1 1122 358999999999
Q ss_pred ccC--CCCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742 249 ALA--PSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL 305 (342)
Q Consensus 249 ~~~--~~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (342)
++. ...+||+|++|+|-.... ....+. ....+..+.+.+.++++++.
T Consensus 218 ~fL~~~~~~YDVIIvDl~DP~~~------~~~~Ly----T~EFy~~~~~~LkPgGV~V~ 266 (374)
T PRK01581 218 EFLSSPSSLYDVIIIDFPDPATE------LLSTLY----TSELFARIATFLTEDGAFVC 266 (374)
T ss_pred HHHHhcCCCccEEEEcCCCcccc------chhhhh----HHHHHHHHHHhcCCCcEEEE
Confidence 876 235799999998732110 001111 11244456667777777766
No 152
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.79 E-value=2e-08 Score=92.14 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcC-CCCeEEeccCCCcHHHHHHHHh-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q psy15742 177 EKVAQHIASRCK-ASDVVIDGFCGCGGNTIQFAAV-----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250 (342)
Q Consensus 177 e~~~~~i~~~~~-~~~~vLDlgcGtG~~~~~~a~~-----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~ 250 (342)
+.+.+.+...++ ++.+|||+|||+|.++..+++. +..++|+|+|+.+++.|+++. .++.+..+|+.++
T Consensus 72 ~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l 145 (272)
T PRK11088 72 DAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL 145 (272)
T ss_pred HHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC
Confidence 344444444433 4568999999999999998865 247999999999999998763 3688999999887
Q ss_pred C-CCCCccEEEEc
Q psy15742 251 A-PSLQGDVVFLS 262 (342)
Q Consensus 251 ~-~~~~~D~Ii~n 262 (342)
+ ++++||+|++.
T Consensus 146 p~~~~sfD~I~~~ 158 (272)
T PRK11088 146 PFADQSLDAIIRI 158 (272)
T ss_pred CCcCCceeEEEEe
Confidence 5 45689999973
No 153
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.79 E-value=3e-08 Score=87.00 Aligned_cols=84 Identities=18% Similarity=0.285 Sum_probs=70.5
Q ss_pred HHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccccCC--
Q psy15742 179 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ-GDFFALAP-- 252 (342)
Q Consensus 179 ~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~-~D~~~~~~-- 252 (342)
++..+.+.. ++++||++|++.|..++++|.. ..+++++|.++++.+.|++|+++.|+.+++.++. +|+.+...
T Consensus 50 ~L~~L~~~~-~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219)
T COG4122 50 LLRLLARLS-GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219)
T ss_pred HHHHHHHhc-CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence 333444333 5679999999999999999986 4689999999999999999999999988899999 59888764
Q ss_pred -CCCccEEEEcC
Q psy15742 253 -SLQGDVVFLSP 263 (342)
Q Consensus 253 -~~~~D~Ii~nP 263 (342)
.++||+||+|-
T Consensus 129 ~~~~fDliFIDa 140 (219)
T COG4122 129 LDGSFDLVFIDA 140 (219)
T ss_pred cCCCccEEEEeC
Confidence 37999999973
No 154
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.79 E-value=6.2e-08 Score=86.88 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=64.3
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-C---CCCccEE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P---SLQGDVV 259 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~---~~~~D~I 259 (342)
+.+|.+|+|.|.|+|.++..+++. ..+|+.+|..++..+.|++|++.+|+.+++++.+.|+.+.- + +..+|.|
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence 568999999999999999999986 46999999999999999999999999889999999996421 1 3579999
Q ss_pred EEcCC
Q psy15742 260 FLSPP 264 (342)
Q Consensus 260 i~nPP 264 (342)
|+|-|
T Consensus 118 fLDlp 122 (247)
T PF08704_consen 118 FLDLP 122 (247)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 99998
No 155
>PRK06202 hypothetical protein; Provisional
Probab=98.79 E-value=2e-08 Score=89.88 Aligned_cols=78 Identities=26% Similarity=0.220 Sum_probs=59.4
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEE
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVF 260 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~------~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii 260 (342)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+.+....+ +++...|..... ++.+||+|+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccCCCccEEE
Confidence 35679999999999999888752 2589999999999999998865443 455555444333 456899999
Q ss_pred EcCCCCCCc
Q psy15742 261 LSPPWGGPE 269 (342)
Q Consensus 261 ~nPP~~~~~ 269 (342)
++-.++...
T Consensus 135 ~~~~lhh~~ 143 (232)
T PRK06202 135 SNHFLHHLD 143 (232)
T ss_pred ECCeeecCC
Confidence 998777653
No 156
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.78 E-value=5.4e-08 Score=91.40 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=63.5
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP 264 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP 264 (342)
+++.+|||+|||+|.++..+++. +.+++++|.|+.+++.|+++... .+++++.+|+.+.+ +++.||+|+++..
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~ 187 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcCh
Confidence 35779999999999999988875 57999999999999999998642 36789999998865 4568999999876
Q ss_pred CCC
Q psy15742 265 WGG 267 (342)
Q Consensus 265 ~~~ 267 (342)
.+.
T Consensus 188 L~~ 190 (340)
T PLN02490 188 IEY 190 (340)
T ss_pred hhh
Confidence 654
No 157
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.78 E-value=7.3e-08 Score=89.66 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=56.9
Q ss_pred HHHHHhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q psy15742 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250 (342)
Q Consensus 181 ~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~ 250 (342)
+.+.+.++++.+|||+|||||..+..+++. +.+++|+|+|++|++.|++++......-++.++++|+.+.
T Consensus 55 ~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 55 DEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred HHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 444555667789999999999999999887 5799999999999999999987643212678899999874
No 158
>KOG1540|consensus
Probab=98.78 E-value=2e-08 Score=88.44 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=70.0
Q ss_pred CCCeEEeccCCCcHHHHHHHHh--C------CEEEEEeCCHHHHHHHHHHHHHcCCCCc--EEEEEccccccC-CCCCcc
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV--C------QKVISIDIDPAKLRLAQHNASVYGVSHK--IQFIQGDFFALA-PSLQGD 257 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~--~------~~v~gvD~s~~~l~~a~~n~~~~gl~~~--i~~~~~D~~~~~-~~~~~D 257 (342)
++.++||++||||-++..+.+. . .+|+.+|+|+.|+..+++++.+.++.+. +.|+++|+.+++ ++..||
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D 179 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD 179 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence 4789999999999999999875 3 6899999999999999999988777544 999999999998 677999
Q ss_pred EEEEcCCCCCCcccc
Q psy15742 258 VVFLSPPWGGPEYAR 272 (342)
Q Consensus 258 ~Ii~nPP~~~~~~~~ 272 (342)
..++ .|+..+...
T Consensus 180 ~yTi--afGIRN~th 192 (296)
T KOG1540|consen 180 AYTI--AFGIRNVTH 192 (296)
T ss_pred eEEE--ecceecCCC
Confidence 9998 677665443
No 159
>PRK04148 hypothetical protein; Provisional
Probab=98.77 E-value=5.1e-08 Score=78.80 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=56.8
Q ss_pred CCeEEeccCCCcH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccEEE-EcCC
Q psy15742 190 SDVVIDGFCGCGG-NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVF-LSPP 264 (342)
Q Consensus 190 ~~~vLDlgcGtG~-~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~Ii-~nPP 264 (342)
+.+++|+|||+|. ++..+++.|..|+|+|+|+.+++.|+++ .++++.+|+++...+ ..+|+|. +.||
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~~a~liysirpp 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYKNAKLIYSIRPP 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHhcCCEEEEeCCC
Confidence 5789999999996 8989998899999999999999888776 257999999987533 4799998 5677
No 160
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.77 E-value=2.9e-08 Score=89.21 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=72.8
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--
Q psy15742 178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-- 252 (342)
Q Consensus 178 ~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-- 252 (342)
.++..+.+..+ ..+||++|+++|..++++|+. +.+++++|.+++..+.|+.|++..|+.++++++.+|+.+.++
T Consensus 69 ~lL~~l~~~~~-ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l 147 (247)
T PLN02589 69 QFLNMLLKLIN-AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQM 147 (247)
T ss_pred HHHHHHHHHhC-CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHH
Confidence 55555555554 458999999999999999975 569999999999999999999999998899999999988652
Q ss_pred ------CCCccEEEEcCC
Q psy15742 253 ------SLQGDVVFLSPP 264 (342)
Q Consensus 253 ------~~~~D~Ii~nPP 264 (342)
.++||+||+|--
T Consensus 148 ~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 148 IEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred HhccccCCcccEEEecCC
Confidence 258999999855
No 161
>PRK03612 spermidine synthase; Provisional
Probab=98.76 E-value=4.2e-08 Score=97.82 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=64.8
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHHHHc-----CC-CCcEEEEEccccccC--CCCCc
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV-C-QKVISIDIDPAKLRLAQHNASVY-----GV-SHKIQFIQGDFFALA--PSLQG 256 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~-~-~~v~gvD~s~~~l~~a~~n~~~~-----gl-~~~i~~~~~D~~~~~--~~~~~ 256 (342)
.+++++|||+|||+|..+.++++. . .+|+++|+|+++++.|++|.... .+ +++++++.+|+.++. ...+|
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 345779999999999999999887 3 69999999999999999954211 22 248999999999865 23589
Q ss_pred cEEEEcCCCC
Q psy15742 257 DVVFLSPPWG 266 (342)
Q Consensus 257 D~Ii~nPP~~ 266 (342)
|+|++|+|..
T Consensus 375 DvIi~D~~~~ 384 (521)
T PRK03612 375 DVIIVDLPDP 384 (521)
T ss_pred CEEEEeCCCC
Confidence 9999999853
No 162
>KOG0820|consensus
Probab=98.76 E-value=6.3e-08 Score=86.00 Aligned_cols=82 Identities=24% Similarity=0.316 Sum_probs=72.1
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 266 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~ 266 (342)
+++++.||++|.|||.++..+.+.|.+|+++|+|+.|+....+..+-...++..+++.||++.... ..||.+|+|-||.
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-PRFDGCVSNLPYQ 134 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-cccceeeccCCcc
Confidence 567899999999999999999999999999999999999999888744445789999999998742 3699999999998
Q ss_pred CCc
Q psy15742 267 GPE 269 (342)
Q Consensus 267 ~~~ 269 (342)
..+
T Consensus 135 ISS 137 (315)
T KOG0820|consen 135 ISS 137 (315)
T ss_pred ccC
Confidence 764
No 163
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.76 E-value=5.1e-08 Score=87.23 Aligned_cols=78 Identities=27% Similarity=0.196 Sum_probs=66.8
Q ss_pred CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEEcCCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWG 266 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~nPP~~ 266 (342)
++.+|||+|||+|.++..+++.+.+++++|+++.+++.|+.++...+. +++++.+|+.+.+ ..+.||+|+++-.+.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 477999999999999999998888999999999999999999987776 6788888888765 446899999976655
Q ss_pred CC
Q psy15742 267 GP 268 (342)
Q Consensus 267 ~~ 268 (342)
..
T Consensus 126 ~~ 127 (233)
T PRK05134 126 HV 127 (233)
T ss_pred cc
Confidence 43
No 164
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.75 E-value=4.1e-08 Score=74.62 Aligned_cols=75 Identities=28% Similarity=0.437 Sum_probs=63.2
Q ss_pred eEEeccCCCcHHHHHHHH-hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEEcCCCCC
Q psy15742 192 VVIDGFCGCGGNTIQFAA-VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGG 267 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a~-~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~nPP~~~ 267 (342)
+++|+|||+|.++..++. ...+++++|.++.+++.++++....+. .+++++.+|+.+.. ...+||+|++++|+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc-cceEEEEcChhhhccccCCceEEEEEccceee
Confidence 489999999999999988 478999999999999999865444433 47999999999876 3568999999999875
No 165
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.75 E-value=6.4e-08 Score=86.40 Aligned_cols=74 Identities=26% Similarity=0.249 Sum_probs=62.0
Q ss_pred CCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG 266 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~ 266 (342)
+.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++.+.. +++.++.+|+.+.+ ++.+||+|+++-..+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 4689999999999999998873 568999999999999988764 36889999998876 556899999986655
Q ss_pred CC
Q psy15742 267 GP 268 (342)
Q Consensus 267 ~~ 268 (342)
..
T Consensus 110 ~~ 111 (240)
T TIGR02072 110 WC 111 (240)
T ss_pred hc
Confidence 43
No 166
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.73 E-value=1.6e-08 Score=87.74 Aligned_cols=82 Identities=26% Similarity=0.316 Sum_probs=70.5
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccC---CCCCccEEEE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA---PSLQGDVVFL 261 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~---~~~~~D~Ii~ 261 (342)
.+.|.+|||.|.|-|..++.+++.|+ +|+.+|.|+..++.|.-|--..++. ..++++.||+.+.. ++.+||+|+-
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 45699999999999999999999976 9999999999999999887666653 36899999999875 4568999999
Q ss_pred cCCCCCC
Q psy15742 262 SPPWGGP 268 (342)
Q Consensus 262 nPP~~~~ 268 (342)
|||+-..
T Consensus 212 DPPRfS~ 218 (287)
T COG2521 212 DPPRFSL 218 (287)
T ss_pred CCCccch
Confidence 9996543
No 167
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.73 E-value=3e-07 Score=81.41 Aligned_cols=138 Identities=17% Similarity=0.199 Sum_probs=86.7
Q ss_pred CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH------------HcCCCCcEEEEEccccccCC----
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS------------VYGVSHKIQFIQGDFFALAP---- 252 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~------------~~gl~~~i~~~~~D~~~~~~---- 252 (342)
++.+||++|||.|..+.++|..|.+|+|+|+|+.+++.+.+... ... ..+++++++|++++.+
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~-~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK-GDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceec-cCceEEEEccCcCCCccccc
Confidence 46799999999999999999999999999999999999865210 011 1379999999999853
Q ss_pred CCCccEEEEcCCCCCCcccc---ccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEEecc
Q psy15742 253 SLQGDVVFLSPPWGGPEYAR---SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTG 329 (342)
Q Consensus 253 ~~~~D~Ii~nPP~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~ 329 (342)
.+.||+|+----+....... ....+..++++ |+..++-... .... .--=|-.....++..+.++.+.+..+..
T Consensus 122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p--gg~llll~~~-~~~~-~~GPPf~v~~~e~~~lf~~~~~i~~l~~ 197 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN--NTQILLLVME-HDKK-SQTPPYSVTQAELIKNFSAKIKFELIDS 197 (226)
T ss_pred cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC--CcEEEEEEEe-cCCC-CCCCCCcCCHHHHHHhccCCceEEEeee
Confidence 24799976532232221110 22334455554 3322221111 1110 0011334567788888888888877765
Q ss_pred cC
Q psy15742 330 RQ 331 (342)
Q Consensus 330 ~~ 331 (342)
.+
T Consensus 198 ~~ 199 (226)
T PRK13256 198 KQ 199 (226)
T ss_pred cc
Confidence 43
No 168
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.72 E-value=6e-08 Score=88.83 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=50.1
Q ss_pred CCeEEeccCCCcHH-HHHHHH-hCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEcc----ccccC--CCCCccEEE
Q psy15742 190 SDVVIDGFCGCGGN-TIQFAA-VCQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGD----FFALA--PSLQGDVVF 260 (342)
Q Consensus 190 ~~~vLDlgcGtG~~-~~~~a~-~~~~v~gvD~s~~~l~~a~~n~~~~-gl~~~i~~~~~D----~~~~~--~~~~~D~Ii 260 (342)
.-++||+|||...+ .+-.++ .+++++|.|+|+.+++.|++|++.| ++.++|+++... ++... +...||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 45799999998865 333333 3999999999999999999999999 998899998653 33222 234899999
Q ss_pred EcCCCCCCc
Q psy15742 261 LSPPWGGPE 269 (342)
Q Consensus 261 ~nPP~~~~~ 269 (342)
|||||....
T Consensus 183 CNPPFy~s~ 191 (299)
T PF05971_consen 183 CNPPFYSSQ 191 (299)
T ss_dssp E-----SS-
T ss_pred cCCccccCh
Confidence 999999754
No 169
>PRK08317 hypothetical protein; Provisional
Probab=98.72 E-value=4.2e-08 Score=87.47 Aligned_cols=80 Identities=28% Similarity=0.334 Sum_probs=64.7
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS 262 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n 262 (342)
+.++.+|||+|||+|.++..++.. ..+++|+|+|+.+++.|+.+... ...+++++.+|+.+.+ +...||+|+++
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 94 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLPFPDGSFDAVRSD 94 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCCCCCCCceEEEEe
Confidence 345789999999999999999876 36899999999999999998432 2247999999988754 45689999997
Q ss_pred CCCCCC
Q psy15742 263 PPWGGP 268 (342)
Q Consensus 263 PP~~~~ 268 (342)
-.+...
T Consensus 95 ~~~~~~ 100 (241)
T PRK08317 95 RVLQHL 100 (241)
T ss_pred chhhcc
Confidence 666543
No 170
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.7e-07 Score=88.99 Aligned_cols=93 Identities=25% Similarity=0.381 Sum_probs=75.9
Q ss_pred HHhcCCCCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CC-CC
Q psy15742 184 ASRCKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PS-LQ 255 (342)
Q Consensus 184 ~~~~~~~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~-~~ 255 (342)
.-..++|.+|||++++.|+=+.++|.. +..|+++|.|+..++..++|+++.|+. ++..++.|..... .. .+
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccccccCc
Confidence 334567999999999999999999886 345799999999999999999999995 5888898877553 22 25
Q ss_pred ccEEEEcCCCCCCccccccccc
Q psy15742 256 GDVVFLSPPWGGPEYARSSFSI 277 (342)
Q Consensus 256 ~D~Ii~nPP~~~~~~~~~~~~~ 277 (342)
||.|++|+|+++..-..+..++
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~ 251 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDV 251 (355)
T ss_pred CcEEEECCCCCCCcccccCccc
Confidence 9999999999998666544444
No 171
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.69 E-value=1.2e-07 Score=82.01 Aligned_cols=65 Identities=29% Similarity=0.396 Sum_probs=51.2
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---------CCCC
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---------APSL 254 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~---------~~~~ 254 (342)
++++.+|||+|||+|.++..+++. ..+|+|+|+|+.+ +. .+++++++|+.+. .+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhCCC
Confidence 457889999999999999988875 3479999999854 12 3578899998753 2345
Q ss_pred CccEEEEcC
Q psy15742 255 QGDVVFLSP 263 (342)
Q Consensus 255 ~~D~Ii~nP 263 (342)
.||+|++|+
T Consensus 98 ~~D~V~~~~ 106 (188)
T TIGR00438 98 KVDVVMSDA 106 (188)
T ss_pred CccEEEcCC
Confidence 799999985
No 172
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.68 E-value=1.2e-09 Score=84.23 Aligned_cols=74 Identities=22% Similarity=0.239 Sum_probs=48.9
Q ss_pred EeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---CCCCCccEEEEcCCCCCC
Q psy15742 194 IDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGDVVFLSPPWGGP 268 (342)
Q Consensus 194 LDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~---~~~~~~D~Ii~nPP~~~~ 268 (342)
||+|||+|.++..++.. ..+++|+|+|+.|++.|++++...+.. +......+..+. ....+||+|++.--++..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999988 889999999999999999998887652 344444444433 333589999997665544
No 173
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.68 E-value=7.1e-08 Score=95.49 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=63.5
Q ss_pred CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc--C-CCCCccEEEEcCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL--A-PSLQGDVVFLSPPW 265 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~--~-~~~~~D~Ii~nPP~ 265 (342)
++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++.. ++..++++++++|+.+. + +..+||+|+++.++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 467999999999999999999888999999999999876542 23335799999999642 2 45689999999987
Q ss_pred CCCc
Q psy15742 266 GGPE 269 (342)
Q Consensus 266 ~~~~ 269 (342)
+...
T Consensus 114 ~~l~ 117 (475)
T PLN02336 114 MYLS 117 (475)
T ss_pred HhCC
Confidence 7653
No 174
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.67 E-value=9e-08 Score=79.99 Aligned_cols=74 Identities=22% Similarity=0.204 Sum_probs=53.9
Q ss_pred HHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-CCCCCccEEEE
Q psy15742 183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-APSLQGDVVFL 261 (342)
Q Consensus 183 i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~-~~~~~~D~Ii~ 261 (342)
+....+++.+|||+|||+|.++..+++.+.+++|+|+++.+++. . +......+.... .+.++||+|++
T Consensus 16 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~---------~--~~~~~~~~~~~~~~~~~~fD~i~~ 84 (161)
T PF13489_consen 16 LLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK---------R--NVVFDNFDAQDPPFPDGSFDLIIC 84 (161)
T ss_dssp HHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH---------T--TSEEEEEECHTHHCHSSSEEEEEE
T ss_pred HhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh---------h--hhhhhhhhhhhhhccccchhhHhh
Confidence 33334568899999999999999998888899999999999988 1 233333322222 34569999999
Q ss_pred cCCCCC
Q psy15742 262 SPPWGG 267 (342)
Q Consensus 262 nPP~~~ 267 (342)
+--++.
T Consensus 85 ~~~l~~ 90 (161)
T PF13489_consen 85 NDVLEH 90 (161)
T ss_dssp ESSGGG
T ss_pred HHHHhh
Confidence 644433
No 175
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.64 E-value=1.4e-07 Score=87.91 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=63.1
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n 262 (342)
++++.+|||+|||+|.+++.+++. ..+++++|. +.+++.+++|+...|+.++++++.+|+++.... .+|+|++.
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~ 222 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFC 222 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeE
Confidence 356789999999999999999987 578999997 789999999999999988999999999864322 47988763
No 176
>PLN02366 spermidine synthase
Probab=98.63 E-value=2.1e-07 Score=86.53 Aligned_cols=78 Identities=14% Similarity=0.137 Sum_probs=65.0
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccccccCC---CCCccE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY--GV-SHKIQFIQGDFFALAP---SLQGDV 258 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~--gl-~~~i~~~~~D~~~~~~---~~~~D~ 258 (342)
.+++++||++|||.|..+.++++. ..+|+.+|+|+.+++.|++.+... ++ +++++++.+|+.++.. .++||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 355789999999999999999987 468999999999999999988653 23 3589999999987652 458999
Q ss_pred EEEcCC
Q psy15742 259 VFLSPP 264 (342)
Q Consensus 259 Ii~nPP 264 (342)
|++|.+
T Consensus 169 Ii~D~~ 174 (308)
T PLN02366 169 IIVDSS 174 (308)
T ss_pred EEEcCC
Confidence 999865
No 177
>KOG1499|consensus
Probab=98.63 E-value=1.1e-07 Score=87.63 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=65.3
Q ss_pred CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS 262 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n 262 (342)
.++.|||+|||||.+++.+|+. +.+|+|||.|.-+ +.|++.+..|++++.++++.+.+.+.. |..+.|+|++.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSE 134 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeeh
Confidence 4789999999999999999998 6789999998755 999999999999888999999998874 45789999993
No 178
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.62 E-value=1.7e-07 Score=92.58 Aligned_cols=99 Identities=24% Similarity=0.380 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHhcC--CCCeEEeccCCCcHHHHHHHHh-C-----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy15742 174 VTPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV-C-----QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG 245 (342)
Q Consensus 174 ~~~e~~~~~i~~~~~--~~~~vLDlgcGtG~~~~~~a~~-~-----~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~ 245 (342)
.||..+++.+...+. +..+|+|+.||+|++.+.+++. + ..++|.|++++....|+.|+-.+|++.++....+
T Consensus 169 yTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~ 248 (489)
T COG0286 169 YTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHG 248 (489)
T ss_pred CChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccc
Confidence 477788888887765 6779999999999999888775 2 5689999999999999999999999545677788
Q ss_pred cccccC------CCCCccEEEEcCCCCCCcccc
Q psy15742 246 DFFALA------PSLQGDVVFLSPPWGGPEYAR 272 (342)
Q Consensus 246 D~~~~~------~~~~~D~Ii~nPP~~~~~~~~ 272 (342)
|...-+ ....||+|++||||.+..+.+
T Consensus 249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~ 281 (489)
T COG0286 249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGG 281 (489)
T ss_pred ccccCCcccccCCccceeEEEeCCCCCcccccc
Confidence 776554 124799999999998655444
No 179
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.57 E-value=3.2e-07 Score=84.07 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=63.4
Q ss_pred CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccccCC--CCCccEEEE
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALAP--SLQGDVVFL 261 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~g--l-~~~i~~~~~D~~~~~~--~~~~D~Ii~ 261 (342)
.+.+||++|||+|.++..+++. ..+++++|+|+.+++.|++++...+ + .++++++.+|..++.. ..+||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4569999999999999888876 4689999999999999999885542 1 2478999999887642 358999999
Q ss_pred cCCC
Q psy15742 262 SPPW 265 (342)
Q Consensus 262 nPP~ 265 (342)
|++.
T Consensus 152 D~~~ 155 (270)
T TIGR00417 152 DSTD 155 (270)
T ss_pred eCCC
Confidence 9884
No 180
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.57 E-value=1.8e-07 Score=82.71 Aligned_cols=73 Identities=29% Similarity=0.372 Sum_probs=61.3
Q ss_pred CCCeEEeccCCCcHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP 264 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~-~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP 264 (342)
++.+|||+|||+|.++..+++. . .+++|+|+++.+++.++.+.. ..++++++.+|+.+.+ +.+.||+|+++-.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeee
Confidence 4789999999999999999887 3 489999999999999999876 2347899999998875 3458999998543
No 181
>KOG1500|consensus
Probab=98.55 E-value=2.3e-07 Score=84.58 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=67.9
Q ss_pred CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP 264 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP 264 (342)
.++.|+|+|||+|.++..+|.. +.+|++||-|+ |.+.|+.-++.|.+.++|.++.|-+.++.-..+.|+||+.|.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPM 252 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPM 252 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccc
Confidence 4778999999999999999987 68999999885 999999999999998999999999999876668999999876
No 182
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.55 E-value=2e-07 Score=85.73 Aligned_cols=77 Identities=22% Similarity=0.359 Sum_probs=64.3
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCC--CccEE
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSL--QGDVV 259 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~--~~D~I 259 (342)
.++..++|.+||.|+.+..+++.. .+|+|+|.|+.+++.|++++.. .++++++++|+.++. +.+ ++|.|
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~vDgI 94 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKVDGI 94 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCccCEE
Confidence 467899999999999999999873 7899999999999999998865 258999999998764 222 79999
Q ss_pred EEcCCCCC
Q psy15742 260 FLSPPWGG 267 (342)
Q Consensus 260 i~nPP~~~ 267 (342)
++|.=...
T Consensus 95 l~DLGvSs 102 (296)
T PRK00050 95 LLDLGVSS 102 (296)
T ss_pred EECCCccc
Confidence 99865443
No 183
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.54 E-value=3.2e-07 Score=83.54 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=83.7
Q ss_pred CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE-cCCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL-SPPWG 266 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~-nPP~~ 266 (342)
.|++|||+|||.|..+..++.. +..|+|+|.+...+...+--.+..|....+..+-.-+.+++..+.||+|++ --=||
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLYH 194 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLYH 194 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehhc
Confidence 3889999999999999999987 567999999988776544433334443334444345556555678999985 45566
Q ss_pred CCccccccccccccCcCCCCchhhhHhhhcc--------------CCCceeecCCCCCHHHHHHhhC-CCcEEEEecc
Q psy15742 267 GPEYARSSFSIDNIFPEQGGGRRLFQVARGI--------------SPNVGYYLPRTSDVFEIFHDSG-KKGSFISLTG 329 (342)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~l~~~~~-~~~~i~~i~~ 329 (342)
..+.......+...+.. ||..+++....- .-..++|+|+..+.....+.++ ...+++.+++
T Consensus 195 rr~Pl~~L~~Lk~~L~~--gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~ 270 (315)
T PF08003_consen 195 RRSPLDHLKQLKDSLRP--GGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSP 270 (315)
T ss_pred cCCHHHHHHHHHHhhCC--CCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCcc
Confidence 66544444444455544 444444433211 2234666666655554444322 3344444443
No 184
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.53 E-value=4.4e-07 Score=82.82 Aligned_cols=74 Identities=19% Similarity=0.288 Sum_probs=56.1
Q ss_pred CCCeEEeccCCCcH----HHHHHHHh-------CCEEEEEeCCHHHHHHHHHHHH----HcC------------------
Q psy15742 189 ASDVVIDGFCGCGG----NTIQFAAV-------CQKVISIDIDPAKLRLAQHNAS----VYG------------------ 235 (342)
Q Consensus 189 ~~~~vLDlgcGtG~----~~~~~a~~-------~~~v~gvD~s~~~l~~a~~n~~----~~g------------------ 235 (342)
++.+|+|+|||||. +++.+++. ..+|+|+|+|+.|++.|++++- ..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996 45555543 3589999999999999998641 011
Q ss_pred ----CCCcEEEEEccccccCC-CCCccEEEEc
Q psy15742 236 ----VSHKIQFIQGDFFALAP-SLQGDVVFLS 262 (342)
Q Consensus 236 ----l~~~i~~~~~D~~~~~~-~~~~D~Ii~n 262 (342)
+..+++|.++|+.+.++ .++||+|+|.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~cr 210 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCR 210 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEec
Confidence 11368999999998753 6789999993
No 185
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.51 E-value=6e-07 Score=78.11 Aligned_cols=109 Identities=21% Similarity=0.306 Sum_probs=76.9
Q ss_pred CeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEEEcCC
Q psy15742 191 DVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSPP 264 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii~nPP 264 (342)
..+||+|||.|.+.+.+|.. ...++|+|+....+..|...+...++ .|+.++++|+...+ ++++.|.|+++-|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 37999999999999999987 78999999999999999999999999 59999999998743 5678999998766
Q ss_pred CCCCcccccccc-ccccCcCCCCchhhhHhhhccCCCceeecCCC
Q psy15742 265 WGGPEYARSSFS-IDNIFPEQGGGRRLFQVARGISPNVGYYLPRT 308 (342)
Q Consensus 265 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (342)
+.-.+... -.++... ..+..+.+.+.+++.+.+-++
T Consensus 98 ----DPWpK~rH~krRl~~~----~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 98 ----DPWPKKRHHKRRLVNP----EFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp --------SGGGGGGSTTSH----HHHHHHHHHEEEEEEEEEEES
T ss_pred ----CCCcccchhhhhcCCc----hHHHHHHHHcCCCCEEEEEeC
Confidence 43221111 1223321 144455566777777766333
No 186
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.50 E-value=6.9e-07 Score=87.12 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=60.5
Q ss_pred CCeEEeccCCCcHHHHHHHHhC------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVC------QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP 263 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~------~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP 263 (342)
+..|+|+|||+|.++..+++.+ .+|++||.|+.++...++.+..++..++|+++++|+.++....++|+||+-.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 4689999999999998777653 7999999999999888888788999889999999999997666999999965
Q ss_pred C
Q psy15742 264 P 264 (342)
Q Consensus 264 P 264 (342)
-
T Consensus 267 L 267 (448)
T PF05185_consen 267 L 267 (448)
T ss_dssp -
T ss_pred c
Confidence 4
No 187
>PLN02823 spermine synthase
Probab=98.48 E-value=1.2e-06 Score=82.41 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=65.3
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccccCC--CCCccEE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALAP--SLQGDVV 259 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~g--l-~~~i~~~~~D~~~~~~--~~~~D~I 259 (342)
.+...+||.+|+|.|..+.++.+. ..+|+.||+|+..++.|++++..++ + +++++++.+|+.+++. ..+||+|
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 345679999999999999998885 5789999999999999999986542 2 3689999999999863 3589999
Q ss_pred EEcCC
Q psy15742 260 FLSPP 264 (342)
Q Consensus 260 i~nPP 264 (342)
++|.+
T Consensus 181 i~D~~ 185 (336)
T PLN02823 181 IGDLA 185 (336)
T ss_pred EecCC
Confidence 99964
No 188
>PTZ00146 fibrillarin; Provisional
Probab=98.47 E-value=7.5e-07 Score=81.46 Aligned_cols=75 Identities=16% Similarity=0.011 Sum_probs=57.6
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVV 259 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~I 259 (342)
++++.+|||+|||+|.++..++.. ...|+++|+++.+.+.....++.. .++.++.+|+.... ....+|+|
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVDVI 206 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCCEE
Confidence 467899999999999999999987 258999999998665544443322 37889999986431 23479999
Q ss_pred EEcCC
Q psy15742 260 FLSPP 264 (342)
Q Consensus 260 i~nPP 264 (342)
++|-+
T Consensus 207 ~~Dva 211 (293)
T PTZ00146 207 FADVA 211 (293)
T ss_pred EEeCC
Confidence 99875
No 189
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.45 E-value=6.6e-07 Score=81.63 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=65.0
Q ss_pred CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC----CccEEEEcCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL----QGDVVFLSPP 264 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~----~~D~Ii~nPP 264 (342)
++..|+|+|+|+|.++..+++.+.+++++|+|+..++..++... ..++++++.+|+.++.... ....|++|.|
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlP 106 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLP 106 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGGHCSSSEEEEEEEET
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHHhhcCCceEEEEEec
Confidence 58899999999999999999999999999999999999998765 2358999999999986332 6679999999
Q ss_pred CCC
Q psy15742 265 WGG 267 (342)
Q Consensus 265 ~~~ 267 (342)
|..
T Consensus 107 y~i 109 (262)
T PF00398_consen 107 YNI 109 (262)
T ss_dssp GTG
T ss_pred ccc
Confidence 844
No 190
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.45 E-value=2.6e-07 Score=77.73 Aligned_cols=69 Identities=30% Similarity=0.340 Sum_probs=61.8
Q ss_pred CeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742 191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL 261 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~ 261 (342)
+.+.|+|+|+|.++..+|..+.+|++++.+|...+.|.+|+..+|. .+++++.+|+.+..- ...|+|+|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f-e~ADvvic 102 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF-ENADVVIC 102 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc-cccceeHH
Confidence 5899999999999999999999999999999999999999988888 589999999988743 35677776
No 191
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.43 E-value=8.9e-07 Score=75.60 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=52.6
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccccccC-----CCCCccE
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--VSHKIQFIQGDFFALA-----PSLQGDV 258 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~g--l~~~i~~~~~D~~~~~-----~~~~~D~ 258 (342)
.++.+|||+|||+|..++.+++. +.+|+..|.++ .++.++.|++.|+ ..+++++...|+.+.. ...+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 35789999999999999999998 78999999999 9999999999988 5567888888775421 3458999
Q ss_pred EEE-cCCC
Q psy15742 259 VFL-SPPW 265 (342)
Q Consensus 259 Ii~-nPP~ 265 (342)
|+. |-=|
T Consensus 123 IlasDv~Y 130 (173)
T PF10294_consen 123 ILASDVLY 130 (173)
T ss_dssp EEEES--S
T ss_pred EEEecccc
Confidence 985 4444
No 192
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.42 E-value=8.2e-07 Score=81.79 Aligned_cols=90 Identities=26% Similarity=0.365 Sum_probs=74.2
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVF 260 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii 260 (342)
..+|..|||++++.|+-+.++|.. ...++++|+++..+...+.|+++.|+. ++.....|..... ....||.|+
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccccccchhh
Confidence 456889999999999999999886 369999999999999999999999984 7888888988763 334699999
Q ss_pred EcCCCCCCccccccccc
Q psy15742 261 LSPPWGGPEYARSSFSI 277 (342)
Q Consensus 261 ~nPP~~~~~~~~~~~~~ 277 (342)
+|+|+.+.....+..++
T Consensus 162 vDaPCSg~G~i~r~p~~ 178 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDI 178 (283)
T ss_dssp EECSCCCGGGTTTCTTH
T ss_pred cCCCccchhhhhhccch
Confidence 99999997655544443
No 193
>KOG1541|consensus
Probab=98.42 E-value=6.2e-07 Score=77.42 Aligned_cols=66 Identities=23% Similarity=0.209 Sum_probs=54.2
Q ss_pred CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEE
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFL 261 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~ 261 (342)
+.-|||+|||||..+..+...|+..+|+|+|+.|++.|.+.- + .-.++.+|+-+-+ ..+.||.+|+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e----~--egdlil~DMG~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERE----L--EGDLILCDMGEGLPFRPGTFDGVIS 118 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhh----h--hcCeeeeecCCCCCCCCCccceEEE
Confidence 568999999999999888888999999999999999999722 1 1257888887654 4578998886
No 194
>KOG1663|consensus
Probab=98.33 E-value=3.5e-06 Score=73.52 Aligned_cols=85 Identities=21% Similarity=0.254 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---
Q psy15742 178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--- 251 (342)
Q Consensus 178 ~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--- 251 (342)
++++.+.+..+ ++++||+|..||..++..|.. +.+|+++|+++.+.+++.+-.+..|+.++++++++++.+.+
T Consensus 63 ~fl~~li~~~~-ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l 141 (237)
T KOG1663|consen 63 QFLQMLIRLLN-AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL 141 (237)
T ss_pred HHHHHHHHHhC-CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence 33444444444 569999999999999999886 78999999999999999999999999999999999988764
Q ss_pred ----CCCCccEEEEcC
Q psy15742 252 ----PSLQGDVVFLSP 263 (342)
Q Consensus 252 ----~~~~~D~Ii~nP 263 (342)
+.+.||++|.|-
T Consensus 142 ~~~~~~~tfDfaFvDa 157 (237)
T KOG1663|consen 142 LADGESGTFDFAFVDA 157 (237)
T ss_pred HhcCCCCceeEEEEcc
Confidence 346899999974
No 195
>KOG4300|consensus
Probab=98.29 E-value=1.9e-06 Score=73.81 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=60.2
Q ss_pred CeEEeccCCCcHHHHHHHH-hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEE-EEEccccccC--CCCCccEEEE
Q psy15742 191 DVVIDGFCGCGGNTIQFAA-VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQ-FIQGDFFALA--PSLQGDVVFL 261 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~-~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~-~~~~D~~~~~--~~~~~D~Ii~ 261 (342)
..||++|||||..--+.-. .+.+||++|.++.|-++|.+.++.+.- .++. |+.++..+++ +++++|+|++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtVV~ 151 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTVVC 151 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeEEE
Confidence 3689999999998766653 378999999999999999999988743 4676 9999999987 7889999998
No 196
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.21 E-value=8.2e-06 Score=72.42 Aligned_cols=107 Identities=18% Similarity=0.233 Sum_probs=81.8
Q ss_pred CeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEEEcCC
Q psy15742 191 DVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSPP 264 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii~nPP 264 (342)
..+||||||.|.+.+.+|+. ...++|||+....+..|...+...++. |+.++++|+..++ ++++.|-|+++-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 47999999999999999998 678999999999999999999999995 8999999998764 4458999988766
Q ss_pred CCCCcccccccc-ccccC-cCCCCchhhhHhhhccCCCceeecCC
Q psy15742 265 WGGPEYARSSFS-IDNIF-PEQGGGRRLFQVARGISPNVGYYLPR 307 (342)
Q Consensus 265 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (342)
+.-..... -.++. +. .+-.+.+.+.+++.+.+-+
T Consensus 129 ----DPWpKkRH~KRRl~~~~-----fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 ----DPWPKKRHHKRRLTQPE-----FLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred ----CCCCCccccccccCCHH-----HHHHHHHHccCCCEEEEEe
Confidence 33221111 12233 32 5556667777877777733
No 197
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.19 E-value=2.5e-06 Score=72.45 Aligned_cols=70 Identities=27% Similarity=0.326 Sum_probs=63.1
Q ss_pred CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n 262 (342)
.|++|||+|+|+|..++.+++. +..|++.|+++......+.|++.||+ .+.+...|... .+..||+++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g--~~~~~Dl~Lag 149 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG--SPPAFDLLLAG 149 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--CCcceeEEEee
Confidence 4889999999999999999997 67899999999999999999999998 79999999987 45579999863
No 198
>KOG3010|consensus
Probab=98.17 E-value=7.5e-07 Score=78.04 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=62.9
Q ss_pred CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGP 268 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~~~ 268 (342)
-..++|+|||+|-.++.+|....+|+|+|+|++|++.|++.-...-..........+..++. .+.+.|+|++---+|-.
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 34799999999988888888899999999999999998875433222113344444555554 35689999997666655
Q ss_pred ccccccccccccC
Q psy15742 269 EYARSSFSIDNIF 281 (342)
Q Consensus 269 ~~~~~~~~~~~~~ 281 (342)
+..+....+.+++
T Consensus 114 dle~fy~~~~rvL 126 (261)
T KOG3010|consen 114 DLERFYKEAYRVL 126 (261)
T ss_pred chHHHHHHHHHHc
Confidence 4433223333444
No 199
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=98.13 E-value=3.2e-05 Score=66.73 Aligned_cols=80 Identities=25% Similarity=0.388 Sum_probs=52.5
Q ss_pred CCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHH--------------------------------
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASV-------------------------------- 233 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~-------------------------------- 233 (342)
+-+++|++||+|.+.--+... -..|+|.|+|+.+++.|++|+..
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA 131 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA 131 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 458999999999987766543 35799999999999999999861
Q ss_pred ---------cCCCCcEEEEEccccccC------CCCCccEEEEcCCCCCCc
Q psy15742 234 ---------YGVSHKIQFIQGDFFALA------PSLQGDVVFLSPPWGGPE 269 (342)
Q Consensus 234 ---------~gl~~~i~~~~~D~~~~~------~~~~~D~Ii~nPP~~~~~ 269 (342)
.|-.....+.++|++++. .....|+|+.|-||+..+
T Consensus 132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t 182 (246)
T PF11599_consen 132 DRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMT 182 (246)
T ss_dssp HHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSS
T ss_pred HHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccc
Confidence 111224778889998852 233579999999999875
No 200
>KOG2915|consensus
Probab=98.13 E-value=2.4e-05 Score=69.82 Aligned_cols=78 Identities=19% Similarity=0.319 Sum_probs=70.3
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVF 260 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii 260 (342)
+.||.+|++-|+|+|+++.++++. -.+++..|......+.|++-.+.+|+.+++++++-|+...- .+..+|.|+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVF 182 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVF 182 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEE
Confidence 568999999999999999999987 37899999999999999999999999999999999987642 356899999
Q ss_pred EcCC
Q psy15742 261 LSPP 264 (342)
Q Consensus 261 ~nPP 264 (342)
+|-|
T Consensus 183 LDlP 186 (314)
T KOG2915|consen 183 LDLP 186 (314)
T ss_pred EcCC
Confidence 9988
No 201
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.13 E-value=1.4e-05 Score=72.17 Aligned_cols=108 Identities=17% Similarity=0.168 Sum_probs=77.9
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCC---CCcEEEEEccccccCC--CC-CccE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGV---SHKIQFIQGDFFALAP--SL-QGDV 258 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl---~~~i~~~~~D~~~~~~--~~-~~D~ 258 (342)
.+...+||=+|.|.|+.+.++.+.. .+|+.||+|+..++.|++-+..... +++++++.+|+..++. .. +||+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 3457899999999999999998873 7999999999999999998765422 3589999999998762 23 7999
Q ss_pred EEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742 259 VFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL 305 (342)
Q Consensus 259 Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (342)
|++|.+-. .. .... +. ....+..+.+.+++++++.+
T Consensus 154 Ii~D~~dp-~~-----~~~~-l~----t~ef~~~~~~~L~~~Gv~v~ 189 (246)
T PF01564_consen 154 IIVDLTDP-DG-----PAPN-LF----TREFYQLCKRRLKPDGVLVL 189 (246)
T ss_dssp EEEESSST-TS-----CGGG-GS----SHHHHHHHHHHEEEEEEEEE
T ss_pred EEEeCCCC-CC-----Cccc-cc----CHHHHHHHHhhcCCCcEEEE
Confidence 99998731 11 1111 11 12255566778888888876
No 202
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.10 E-value=5.3e-05 Score=65.85 Aligned_cols=80 Identities=19% Similarity=0.162 Sum_probs=69.8
Q ss_pred HHHHhcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccE
Q psy15742 182 HIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDV 258 (342)
Q Consensus 182 ~i~~~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~ 258 (342)
.+...++.+.++.|+||--|.+..++.+. ...++++|+++..++.|.+|+..+++.++++...+|.+.... +..+|+
T Consensus 9 ~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ 88 (226)
T COG2384 9 TVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDV 88 (226)
T ss_pred HHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCE
Confidence 34455566778999999999999999987 678999999999999999999999999999999999987664 347999
Q ss_pred EEE
Q psy15742 259 VFL 261 (342)
Q Consensus 259 Ii~ 261 (342)
|++
T Consensus 89 ivI 91 (226)
T COG2384 89 IVI 91 (226)
T ss_pred EEE
Confidence 988
No 203
>KOG1661|consensus
Probab=98.09 E-value=1.7e-05 Score=68.18 Aligned_cols=85 Identities=15% Similarity=0.116 Sum_probs=69.4
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcC--------C-CCcEEEEE
Q psy15742 178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYG--------V-SHKIQFIQ 244 (342)
Q Consensus 178 ~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~g--------l-~~~i~~~~ 244 (342)
.+++.+...+.+|.++||+|+|||.++..++.. |..+.|||.-++.++.+++|+...- + ..+..++.
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 444666667788999999999999999999865 4556999999999999999997653 1 24688999
Q ss_pred ccccccC-CCCCccEEEEc
Q psy15742 245 GDFFALA-PSLQGDVVFLS 262 (342)
Q Consensus 245 ~D~~~~~-~~~~~D~Ii~n 262 (342)
+|..... +..+||.|.+-
T Consensus 151 GDgr~g~~e~a~YDaIhvG 169 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVG 169 (237)
T ss_pred CCccccCCccCCcceEEEc
Confidence 9998865 45699999984
No 204
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=98.08 E-value=1.2e-05 Score=71.12 Aligned_cols=79 Identities=23% Similarity=0.326 Sum_probs=49.7
Q ss_pred CeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc---CC-----CCcEEEEEccccccCC--CCCccEEE
Q psy15742 191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY---GV-----SHKIQFIQGDFFALAP--SLQGDVVF 260 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~---gl-----~~~i~~~~~D~~~~~~--~~~~D~Ii 260 (342)
.+|||..+|.|..++-+|..|.+|+++|.||-.....++-++.+ .- ..+++++++|..+++. ..+||+|.
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 48999999999999999988999999999998776665544332 11 1379999999999864 46899999
Q ss_pred EcCCCCCCc
Q psy15742 261 LSPPWGGPE 269 (342)
Q Consensus 261 ~nPP~~~~~ 269 (342)
+||.|....
T Consensus 157 ~DPMFp~~~ 165 (234)
T PF04445_consen 157 FDPMFPERK 165 (234)
T ss_dssp E--S-----
T ss_pred ECCCCCCcc
Confidence 999998753
No 205
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.06 E-value=2e-05 Score=64.97 Aligned_cols=74 Identities=27% Similarity=0.296 Sum_probs=59.3
Q ss_pred CCCCeEEeccCCCcHHHHHHHH-----h-CCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccccccCCCCCccEE
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAA-----V-CQKVISIDIDPAKLRLAQHNASVYG--VSHKIQFIQGDFFALAPSLQGDVV 259 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~-----~-~~~v~gvD~s~~~l~~a~~n~~~~g--l~~~i~~~~~D~~~~~~~~~~D~I 259 (342)
.+..+|+|+|||.|.++..++. . +.+|+|+|.++..++.|....+..+ ...+.++..++..+.......+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 3577999999999999999998 4 7899999999999999999998887 445677777777655444455555
Q ss_pred EE
Q psy15742 260 FL 261 (342)
Q Consensus 260 i~ 261 (342)
+.
T Consensus 104 vg 105 (141)
T PF13679_consen 104 VG 105 (141)
T ss_pred EE
Confidence 55
No 206
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.04 E-value=8.1e-06 Score=72.58 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=34.4
Q ss_pred CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHH
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRL 226 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~ 226 (342)
++.++||+|||||.++..+++. +.+|+|+|+++.++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 4779999999999999999998 5789999999988865
No 207
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.03 E-value=1.9e-05 Score=69.10 Aligned_cols=69 Identities=26% Similarity=0.327 Sum_probs=56.6
Q ss_pred EEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCC-ccEEEE
Q psy15742 193 VIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ-GDVVFL 261 (342)
Q Consensus 193 vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~-~D~Ii~ 261 (342)
|.|+||--|.+.+++.+.+ .+++++|+++..++.|++|++.+|+.++++++.+|.++..+.+. .|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEE
Confidence 6899999999999999985 58999999999999999999999998899999999988765554 888887
No 208
>KOG2899|consensus
Probab=98.01 E-value=2.1e-05 Score=69.07 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=41.1
Q ss_pred CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY 234 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~ 234 (342)
+..+||+||-+|.+++.+|+. ...+.|+|||+..++.|++|++..
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 678999999999999999997 678999999999999999998643
No 209
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.00 E-value=3e-05 Score=67.86 Aligned_cols=77 Identities=32% Similarity=0.445 Sum_probs=51.2
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHH-------HcCC-CCcEEEEEccccccCC----
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNAS-------VYGV-SHKIQFIQGDFFALAP---- 252 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~-------~~gl-~~~i~~~~~D~~~~~~---- 252 (342)
+.+++.++|+|||.|...+.+|.. ..+++|||+.+...+.|+.+.+ ..|. ..++++.++|+.+...
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 346889999999999999988876 5569999999999988876543 3344 2478899999876431
Q ss_pred CCCccEEEEcC
Q psy15742 253 SLQGDVVFLSP 263 (342)
Q Consensus 253 ~~~~D~Ii~nP 263 (342)
-...|+|++|-
T Consensus 120 ~s~AdvVf~Nn 130 (205)
T PF08123_consen 120 WSDADVVFVNN 130 (205)
T ss_dssp GHC-SEEEE--
T ss_pred hcCCCEEEEec
Confidence 12579999973
No 210
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.97 E-value=5.7e-06 Score=71.98 Aligned_cols=131 Identities=14% Similarity=0.160 Sum_probs=78.4
Q ss_pred CeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEc--CCC
Q psy15742 191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLS--PPW 265 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~n--PP~ 265 (342)
.++||+|||||..+..+-....+.+|||+|..|++.|.++ |+- -++.++|+..+. ...+||+|++- -||
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eK----g~Y--D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Y 200 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEK----GLY--DTLYVAEAVLFLEDLTQERFDLIVAADVLPY 200 (287)
T ss_pred ceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhc----cch--HHHHHHHHHHHhhhccCCcccchhhhhHHHh
Confidence 6899999999999999988889999999999999998875 331 245566655444 34589999863 344
Q ss_pred CCCcccc-ccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHH----HH-HHhhCCCcEEEEecccCC
Q psy15742 266 GGPEYAR-SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVF----EI-FHDSGKKGSFISLTGRQM 332 (342)
Q Consensus 266 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~l-~~~~~~~~~i~~i~~~~~ 332 (342)
-|. .. ........+.+ ||+..++.-..-..+. +.+-++.+.. -+ ..+...|+.++.+....+
T Consensus 201 lG~--Le~~~~~aa~~L~~--gGlfaFSvE~l~~~~~-f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tti 268 (287)
T COG4976 201 LGA--LEGLFAGAAGLLAP--GGLFAFSVETLPDDGG-FVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTI 268 (287)
T ss_pred hcc--hhhHHHHHHHhcCC--CceEEEEecccCCCCC-eecchhhhhccchHHHHHHHHhcCceEEEeecccc
Confidence 432 11 11222233433 5555444433333333 3331111111 11 123457888888776554
No 211
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.97 E-value=1.1e-05 Score=70.12 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=58.1
Q ss_pred CCCeEEeccCCCcHHHHHH--HHhCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccccc-cC-----CCCCccEE
Q psy15742 189 ASDVVIDGFCGCGGNTIQF--AAVCQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGDFFA-LA-----PSLQGDVV 259 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~--a~~~~~v~gvD~s~~~l~~a~~n~~~~-gl~~~i~~~~~D~~~-~~-----~~~~~D~I 259 (342)
++-++||+|.|.-.+=-.+ ...|.+.+|.|+|+.++..|+.++..| ++...++++...-.+ +. .+..||++
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t 157 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT 157 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence 4557888876654432112 234899999999999999999999998 787677776543222 21 24589999
Q ss_pred EEcCCCCCC
Q psy15742 260 FLSPPWGGP 268 (342)
Q Consensus 260 i~nPP~~~~ 268 (342)
+|||||+..
T Consensus 158 lCNPPFh~s 166 (292)
T COG3129 158 LCNPPFHDS 166 (292)
T ss_pred ecCCCcchh
Confidence 999999975
No 212
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.94 E-value=2.8e-05 Score=73.01 Aligned_cols=78 Identities=23% Similarity=0.320 Sum_probs=54.5
Q ss_pred CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHc---------CCCCcEEEEEcccccc------CC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVY---------GVSHKIQFIQGDFFAL------AP 252 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~---------gl~~~i~~~~~D~~~~------~~ 252 (342)
++.+|||+|||-|+...-+... ...++|+|++...++.|+++.+.. ...-...++.+|++.. .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999999988777766 679999999999999999998321 1112567899998753 12
Q ss_pred C-CCccEEEEcCCCC
Q psy15742 253 S-LQGDVVFLSPPWG 266 (342)
Q Consensus 253 ~-~~~D~Ii~nPP~~ 266 (342)
. ..||+|-|--..|
T Consensus 142 ~~~~FDvVScQFalH 156 (331)
T PF03291_consen 142 RSRKFDVVSCQFALH 156 (331)
T ss_dssp TTS-EEEEEEES-GG
T ss_pred cCCCcceeehHHHHH
Confidence 2 4899999954443
No 213
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.92 E-value=3.5e-05 Score=63.27 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=50.9
Q ss_pred eEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q psy15742 192 VVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~ 250 (342)
+++|+|||+|..+..+++.+ .+++++|.++.+.+.+++|++.++++ ++++++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeCC
Confidence 48999999999999999874 47999999999999999999999884 688888877653
No 214
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.92 E-value=0.0001 Score=73.37 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=82.1
Q ss_pred CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---CCCCCccEEEEcC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGDVVFLSP 263 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~---~~~~~~D~Ii~nP 263 (342)
.+..+||+|||.|.+.+.+|.. ...++|+|+....+..|...+...++ .|+.++++|+..+ .+++++|.|+++-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3568999999999999999987 67899999999999999999888898 4899999887533 3667899999987
Q ss_pred CCCCCccccccc-cccccCcCCCCchhhhHhhhccCCCceeecCCCC
Q psy15742 264 PWGGPEYARSSF-SIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTS 309 (342)
Q Consensus 264 P~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (342)
| +.-.+.. .-.++... ..+....+.+.+++.+.+-++.
T Consensus 426 P----DPWpKkrh~krRl~~~----~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 426 P----DPWIKNKQKKKRIFNK----ERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred C----CCCCCCCCccccccCH----HHHHHHHHhcCCCCEEEEEcCC
Confidence 7 4333111 12233321 1455566677777777764443
No 215
>PRK11524 putative methyltransferase; Provisional
Probab=97.92 E-value=3.5e-05 Score=71.10 Aligned_cols=58 Identities=24% Similarity=0.381 Sum_probs=50.3
Q ss_pred HHHHHHHHHH-hcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH
Q psy15742 176 PEKVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASV 233 (342)
Q Consensus 176 ~e~~~~~i~~-~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~ 233 (342)
|..+++.+.. ...+|+.|||+|||+|+.++.+.+.+.+.+|+|+++++++.|++++..
T Consensus 194 P~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 4566666554 457899999999999999999999999999999999999999999853
No 216
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.92 E-value=8.8e-05 Score=65.63 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=48.1
Q ss_pred CCCeEEeccCCCcHHHHHHHH--hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC---CCccEEEEcC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS---LQGDVVFLSP 263 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~--~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~---~~~D~Ii~nP 263 (342)
.|++||=+|=.-- .++.+|. ...+|+-+|+|+..++..++.++..|+ +++.++.|+.+.+|. ++||++++||
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl--~i~~~~~DlR~~LP~~~~~~fD~f~TDP 120 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL--PIEAVHYDLRDPLPEELRGKFDVFFTDP 120 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEEEE--
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--ceEEEEecccccCCHHHhcCCCEEEeCC
Confidence 3788988874433 3444444 378999999999999999999999999 599999999988754 5899999999
Q ss_pred CCCCC
Q psy15742 264 PWGGP 268 (342)
Q Consensus 264 P~~~~ 268 (342)
||...
T Consensus 121 PyT~~ 125 (243)
T PF01861_consen 121 PYTPE 125 (243)
T ss_dssp -SSHH
T ss_pred CCCHH
Confidence 99753
No 217
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.91 E-value=3.5e-05 Score=71.68 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=55.9
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEcCC
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPP 264 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nPP 264 (342)
+.+|.+++|+||++|+++..+.+.|.+|+|||..+- ..++.. +++++...+|.+.+.+ ...+|+++||--
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l-----~~~L~~---~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPM-----AQSLMD---TGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhc-----CHhhhC---CCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 457899999999999999999999999999996541 122222 2489999999988875 668999999854
No 218
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.86 E-value=5.3e-05 Score=66.88 Aligned_cols=54 Identities=22% Similarity=0.488 Sum_probs=41.3
Q ss_pred HHHHHHHHH-HhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Q psy15742 176 PEKVAQHIA-SRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQH 229 (342)
Q Consensus 176 ~e~~~~~i~-~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~ 229 (342)
|..+++.+. ...++|+.|||++||+|+.++++.+.+.+.+|+|+++.+++.|++
T Consensus 177 P~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 344444444 455789999999999999999999999999999999999999874
No 219
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.85 E-value=0.00011 Score=68.03 Aligned_cols=74 Identities=22% Similarity=0.356 Sum_probs=62.5
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------CCCCccEE
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDVV 259 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~~~~~D~I 259 (342)
++|+.++|..+|.|+.+..+++. ..+|+|+|.|+.+++.|++++..++ ++++++++++.++. ...++|.|
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF~~l~~~l~~~~~~~vDgI 96 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNFANFFEHLDELLVTKIDGI 96 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCHHHHHHHHHhcCCCcccEE
Confidence 46789999999999999999886 4799999999999999999987653 58999999988753 22468999
Q ss_pred EEcC
Q psy15742 260 FLSP 263 (342)
Q Consensus 260 i~nP 263 (342)
+.|-
T Consensus 97 l~DL 100 (305)
T TIGR00006 97 LVDL 100 (305)
T ss_pred EEec
Confidence 9874
No 220
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.83 E-value=4.7e-05 Score=69.92 Aligned_cols=74 Identities=23% Similarity=0.212 Sum_probs=59.1
Q ss_pred eEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC---CCCccEEEEcCCCCC
Q psy15742 192 VVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---SLQGDVVFLSPPWGG 267 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~---~~~~D~Ii~nPP~~~ 267 (342)
+++|++||.|+++..+...|. .+.++|+++.+++..+.|... .++++|+.++.. ...+|+++.+||+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~ 74 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPCQP 74 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCCChh
Confidence 689999999999998887755 468899999999999988731 256778777653 347999999999997
Q ss_pred Ccccc
Q psy15742 268 PEYAR 272 (342)
Q Consensus 268 ~~~~~ 272 (342)
.+..+
T Consensus 75 fS~ag 79 (275)
T cd00315 75 FSIAG 79 (275)
T ss_pred hhHHh
Confidence 65444
No 221
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.80 E-value=6.9e-05 Score=71.65 Aligned_cols=79 Identities=28% Similarity=0.423 Sum_probs=62.3
Q ss_pred CCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccccC--CCCCccEEEEc
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFALA--PSLQGDVVFLS 262 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~-~i~~~~~D~~~~~--~~~~~D~Ii~n 262 (342)
.+-++||..+|||.-++..++. ..+|+..|+|+.+++..++|++.|++++ .+++.+.|+..++ ....||+|=+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 3458999999999999999987 4789999999999999999999999976 6999999998877 56789999999
Q ss_pred CCCCCC
Q psy15742 263 PPWGGP 268 (342)
Q Consensus 263 PP~~~~ 268 (342)
||+.+
T Consensus 129 -PfGSp 133 (377)
T PF02005_consen 129 -PFGSP 133 (377)
T ss_dssp --SS--
T ss_pred -CCCCc
Confidence 56654
No 222
>PRK13699 putative methylase; Provisional
Probab=97.77 E-value=0.0001 Score=65.71 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=49.7
Q ss_pred HHHHHHHHHH-hcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc
Q psy15742 176 PEKVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY 234 (342)
Q Consensus 176 ~e~~~~~i~~-~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~ 234 (342)
|..+++.+.. ..++|+.|||++||+|+.++.+.+.+.+.+|+|++++..+.|.++++..
T Consensus 149 P~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 149 PVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred cHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 4455555443 4568999999999999999999988999999999999999999988654
No 223
>PRK00536 speE spermidine synthase; Provisional
Probab=97.69 E-value=0.00048 Score=62.45 Aligned_cols=76 Identities=9% Similarity=-0.145 Sum_probs=58.5
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccccccCCCCCccEEEEcC
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY--GV-SHKIQFIQGDFFALAPSLQGDVVFLSP 263 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~--gl-~~~i~~~~~D~~~~~~~~~~D~Ii~nP 263 (342)
.+..++||=+|.|.|+.+.++.+...+|+-||+|+..++.+++-+... ++ +++++++.. +.+ ...++||+||+|-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~-~~~~~fDVIIvDs 147 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD-LDIKKYDLIICLQ 147 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-ccCCcCCEEEEcC
Confidence 455789999999999999999998669999999999999999955432 23 357777752 221 1235899999994
Q ss_pred C
Q psy15742 264 P 264 (342)
Q Consensus 264 P 264 (342)
.
T Consensus 148 ~ 148 (262)
T PRK00536 148 E 148 (262)
T ss_pred C
Confidence 4
No 224
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.68 E-value=0.0002 Score=61.56 Aligned_cols=69 Identities=22% Similarity=0.141 Sum_probs=59.7
Q ss_pred eEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742 192 VVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL 261 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~ 261 (342)
+++|+|+|.|.-++.+|-. ..+++.+|.+..-+...+.-....|++ |++++++.+.+.....+||+|++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPEYRESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTTTTT-EEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccccCCCccEEEe
Confidence 8999999999999998875 678999999999999999999999995 89999999999445668999998
No 225
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.65 E-value=0.00015 Score=67.40 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=78.0
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC-----C-CCcEEEEEccccccCC--CCCc
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG-----V-SHKIQFIQGDFFALAP--SLQG 256 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~g-----l-~~~i~~~~~D~~~~~~--~~~~ 256 (342)
++...+||-+|.|.|-...++.+. ..+++-||+||.|++.+++|..... + +.+++++..|+++|.. ...|
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 445678999999999999999887 5799999999999999997764332 2 3589999999999973 3489
Q ss_pred cEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742 257 DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL 305 (342)
Q Consensus 257 D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (342)
|+||.|-| +.. .+.+.+++.. ....-..+++++.+..+.
T Consensus 367 D~vIVDl~----DP~--tps~~rlYS~----eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 367 DVVIVDLP----DPS--TPSIGRLYSV----EFYRLLSRHLAETGLMVV 405 (508)
T ss_pred cEEEEeCC----CCC--CcchhhhhhH----HHHHHHHHhcCcCceEEE
Confidence 99999988 432 2344444321 122333445555555554
No 226
>KOG2078|consensus
Probab=97.62 E-value=3.6e-05 Score=72.63 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=61.8
Q ss_pred HHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEccccccC
Q psy15742 184 ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHK-IQFIQGDFFALA 251 (342)
Q Consensus 184 ~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~-i~~~~~D~~~~~ 251 (342)
....++|..|.|++||.|-+++.+++.+++|++.|++++++++.+.|+..|.+.+. ++....|+.++.
T Consensus 244 sg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 244 SGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred hhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 33567899999999999999999999999999999999999999999999998654 999999988776
No 227
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.62 E-value=0.00021 Score=64.25 Aligned_cols=64 Identities=28% Similarity=0.494 Sum_probs=52.7
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL 261 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~ 261 (342)
.+..+|+|+|+|+|.++..+++. +.+++..|+ |+.++.++. .++++++.+|+++..|. +|++++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P~--~D~~~l 164 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLPV--ADVYLL 164 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCSS--ESEEEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhcc--ccceee
Confidence 34568999999999999999987 789999999 888888888 36999999999965554 999998
No 228
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.61 E-value=0.00027 Score=58.81 Aligned_cols=73 Identities=19% Similarity=0.133 Sum_probs=60.3
Q ss_pred CCCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------CCCCccEE
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDVV 259 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~~~~~D~I 259 (342)
.|..||++|.|||.++-.+.++| ..++++|.|++-.....+... .++++++|+.+.. ....||.|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHHHhhcCCCeeeeE
Confidence 47789999999999999998874 579999999999888776542 5679999998864 34579999
Q ss_pred EEcCCCCC
Q psy15742 260 FLSPPWGG 267 (342)
Q Consensus 260 i~nPP~~~ 267 (342)
||--|.-.
T Consensus 122 iS~lPll~ 129 (194)
T COG3963 122 ISGLPLLN 129 (194)
T ss_pred Eecccccc
Confidence 99988654
No 229
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.60 E-value=0.0003 Score=64.54 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=76.3
Q ss_pred CeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccccCC--CCCccEEEEc-
Q psy15742 191 DVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALAP--SLQGDVVFLS- 262 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~g--l-~~~i~~~~~D~~~~~~--~~~~D~Ii~n- 262 (342)
++||=+|.|.|+.+.++.+.. .+++.||+++..+++|++-+.... . +++++++.+|..++.. ..+||+|++|
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999984 899999999999999999886543 2 3689999999999873 2379999987
Q ss_pred -CCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742 263 -PPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL 305 (342)
Q Consensus 263 -PP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (342)
+|- ++. ...+ .....-.|.+.+.+++++..
T Consensus 158 tdp~-gp~--~~Lf----------t~eFy~~~~~~L~~~Gi~v~ 188 (282)
T COG0421 158 TDPV-GPA--EALF----------TEEFYEGCRRALKEDGIFVA 188 (282)
T ss_pred CCCC-Ccc--cccC----------CHHHHHHHHHhcCCCcEEEE
Confidence 332 221 1111 12244556666777777665
No 230
>KOG1975|consensus
Probab=97.59 E-value=0.00014 Score=66.53 Aligned_cols=86 Identities=23% Similarity=0.242 Sum_probs=65.4
Q ss_pred HHHHhcCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcC-CCC----cEEEEEccccccC----
Q psy15742 182 HIASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYG-VSH----KIQFIQGDFFALA---- 251 (342)
Q Consensus 182 ~i~~~~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~g-l~~----~i~~~~~D~~~~~---- 251 (342)
+|..+.++++.++|+|||-|+..+-+-+. -..++|+|+....++.|+.+.+... ... .+.|+.+|++...
T Consensus 110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred HHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence 44556678889999999999999988776 4679999999999999998876432 111 4789999987542
Q ss_pred ---CCCCccEEEEcCCCCC
Q psy15742 252 ---PSLQGDVVFLSPPWGG 267 (342)
Q Consensus 252 ---~~~~~D~Ii~nPP~~~ 267 (342)
++.+||+|-|--.+|.
T Consensus 190 ~e~~dp~fDivScQF~~HY 208 (389)
T KOG1975|consen 190 LEFKDPRFDIVSCQFAFHY 208 (389)
T ss_pred ccCCCCCcceeeeeeeEee
Confidence 2234999988655554
No 231
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=97.58 E-value=0.00029 Score=70.26 Aligned_cols=93 Identities=22% Similarity=0.315 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHhc----CCCCeEEeccCCCcHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEE
Q psy15742 175 TPEKVAQHIASRC----KASDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFI 243 (342)
Q Consensus 175 ~~e~~~~~i~~~~----~~~~~vLDlgcGtG~~~~~~a~~------~~~v~gvD~s~~~l~~a~~n~~~~gl~~-~i~~~ 243 (342)
+|..+++.+...+ .++..+.|+.||+|++.+...+. ...++|.+..+.+...|+.|+..++..+ .....
T Consensus 199 Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~ 278 (501)
T TIGR00497 199 TPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNII 278 (501)
T ss_pred CcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcc
Confidence 5667777665543 25568999999999999876542 2468999999999999999998887642 33444
Q ss_pred EccccccC---CCCCccEEEEcCCCCC
Q psy15742 244 QGDFFALA---PSLQGDVVFLSPPWGG 267 (342)
Q Consensus 244 ~~D~~~~~---~~~~~D~Ii~nPP~~~ 267 (342)
.+|.+..+ ...+||.|++||||+.
T Consensus 279 ~~dtl~~~d~~~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 279 NADTLTTKEWENENGFEVVVSNPPYSI 305 (501)
T ss_pred cCCcCCCccccccccCCEEeecCCccc
Confidence 56654432 2347999999999986
No 232
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.49 E-value=0.0004 Score=60.95 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=63.0
Q ss_pred CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCC-ccEEEE
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ-GDVVFL 261 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~-~D~Ii~ 261 (342)
+.+++|+|+|.|.-++.+|-. ..+|+-+|.....+...+.-....|+ +|++++++.+.++..... ||+|++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccccccCcEEEe
Confidence 579999999999999998843 56799999999999999999999999 489999999999875555 999998
No 233
>KOG1122|consensus
Probab=97.49 E-value=0.00045 Score=65.43 Aligned_cols=85 Identities=20% Similarity=0.225 Sum_probs=71.2
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC---CCCccEEE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---SLQGDVVF 260 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~---~~~~D~Ii 260 (342)
.++|.+|||+++-.|+=+.++|.. -..|++.|.+...+...+.|+.+.|+. +....+.|..+++. .++||-|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~~~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFPGSFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccCcccceee
Confidence 457999999999999988888764 467999999999999999999999994 67788888877651 12799999
Q ss_pred EcCCCCCCcccc
Q psy15742 261 LSPPWGGPEYAR 272 (342)
Q Consensus 261 ~nPP~~~~~~~~ 272 (342)
+|-|+.|.....
T Consensus 318 LDAPCSGtgvi~ 329 (460)
T KOG1122|consen 318 LDAPCSGTGVIS 329 (460)
T ss_pred ecCCCCCCcccc
Confidence 999999954443
No 234
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.48 E-value=0.00042 Score=61.76 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC
Q psy15742 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL 254 (342)
Q Consensus 177 e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~ 254 (342)
+.+.+.+...+++..+|+|+|||.--+++.+... +..++|+|+|..+++..+.-+...+. +.++...|...-.+..
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~~~~ 170 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDPPKE 170 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSHTTS
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccCCCC
Confidence 4444555555666789999999999999988765 57999999999999999999998887 6788888988776677
Q ss_pred CccEEEE
Q psy15742 255 QGDVVFL 261 (342)
Q Consensus 255 ~~D~Ii~ 261 (342)
..|+.++
T Consensus 171 ~~DlaLl 177 (251)
T PF07091_consen 171 PADLALL 177 (251)
T ss_dssp EESEEEE
T ss_pred CcchhhH
Confidence 7898887
No 235
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00051 Score=64.23 Aligned_cols=77 Identities=27% Similarity=0.381 Sum_probs=64.8
Q ss_pred CCeEEeccCCCcHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccEEEEcCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV-CQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSPPW 265 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~-~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~Ii~nPP~ 265 (342)
+.+|+|..+|||.-++.+|.. +. .|+.-|+||.+++.++.|++.|... +...++.|+..++.. ..||+|=+| ||
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~~~~fd~IDiD-PF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHELHRAFDVIDID-PF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhcCCCccEEecC-CC
Confidence 568999999999999999987 33 7999999999999999999999442 567777998887744 689999999 56
Q ss_pred CCC
Q psy15742 266 GGP 268 (342)
Q Consensus 266 ~~~ 268 (342)
+.+
T Consensus 131 GSP 133 (380)
T COG1867 131 GSP 133 (380)
T ss_pred CCC
Confidence 654
No 236
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.31 E-value=0.00063 Score=63.62 Aligned_cols=102 Identities=23% Similarity=0.325 Sum_probs=67.0
Q ss_pred eEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEEEcCCCC
Q psy15742 192 VVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSPPWG 266 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii~nPP~~ 266 (342)
+++|++||.|+++..+.+.| ..+.++|+++.+.+.-+.|.. ....+|+.++. +. .+|+++.-||+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccCCc
Confidence 68999999999999998886 467899999999999999973 78888988774 22 599999999999
Q ss_pred CCccccccccccccCcCCCCchhhhHhhhccCCCceee
Q psy15742 267 GPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYY 304 (342)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (342)
+.+..+......+-... =...++++.....|..+++
T Consensus 73 ~fS~ag~~~~~~d~r~~--L~~~~~~~v~~~~Pk~~~~ 108 (335)
T PF00145_consen 73 GFSIAGKRKGFDDPRNS--LFFEFLRIVKELKPKYFLL 108 (335)
T ss_dssp TTSTTSTHHCCCCHTTS--HHHHHHHHHHHHS-SEEEE
T ss_pred eEeccccccccccccch--hhHHHHHHHhhccceEEEe
Confidence 87655522221111011 0124555666666655443
No 237
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.23 E-value=0.00036 Score=59.81 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=45.7
Q ss_pred CCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---------C--CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------P--SLQ 255 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---------~--~~~ 255 (342)
+.++||+||++|+++..+.+.+ .+|+|+|+.+. ... .++.++++|+.+.. . ...
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 4799999999999999999886 89999999876 111 35677777765431 1 258
Q ss_pred ccEEEEcC
Q psy15742 256 GDVVFLSP 263 (342)
Q Consensus 256 ~D~Ii~nP 263 (342)
+|+|++|-
T Consensus 92 ~dlv~~D~ 99 (181)
T PF01728_consen 92 FDLVLSDM 99 (181)
T ss_dssp ESEEEE--
T ss_pred cceecccc
Confidence 99999996
No 238
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0023 Score=55.55 Aligned_cols=134 Identities=18% Similarity=0.105 Sum_probs=78.2
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---------CCC
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------PSL 254 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~-~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---------~~~ 254 (342)
+.++.+|+|+||-.|+.+..+++. + ..|+|+|+.|-. .-.++.++++|+++.. ...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHcCCC
Confidence 467899999999999999999987 2 349999998731 1136899999998753 233
Q ss_pred CccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhh-ccCCCceeec--CCCCCHHHHHHhhCCCcEEEEecccC
Q psy15742 255 QGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVAR-GISPNVGYYL--PRTSDVFEIFHDSGKKGSFISLTGRQ 331 (342)
Q Consensus 255 ~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l--~~~~~~~~l~~~~~~~~~i~~i~~~~ 331 (342)
.+|+|++|+.-.... ..++....-. .-.....+++. .+.+++.+.. -..-..+++...+...|+.+.+....
T Consensus 111 ~~DvV~sD~ap~~~g----~~~~Dh~r~~-~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~ 185 (205)
T COG0293 111 PVDVVLSDMAPNTSG----NRSVDHARSM-YLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPK 185 (205)
T ss_pred CcceEEecCCCCcCC----CccccHHHHH-HHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecCc
Confidence 579999986532211 1111111000 00112222222 3333333332 33444555666666677777666655
Q ss_pred CCCCCC
Q psy15742 332 MFSPSQ 337 (342)
Q Consensus 332 ~fp~t~ 337 (342)
-+...+
T Consensus 186 aSR~~S 191 (205)
T COG0293 186 ASRKRS 191 (205)
T ss_pred cccCCC
Confidence 544443
No 239
>KOG1227|consensus
Probab=97.20 E-value=0.00016 Score=65.37 Aligned_cols=73 Identities=23% Similarity=0.366 Sum_probs=64.3
Q ss_pred CCCeEEeccCCCcHHHH-HHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742 189 ASDVVIDGFCGCGGNTI-QFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL 261 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~-~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~ 261 (342)
.+..|.|+++|.|++++ .+... +..|+++|.+|.+++..++|++.|++.++..++.+|.....++...|-|.+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnL 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNL 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheee
Confidence 46789999999999999 44444 788999999999999999999999998888899999988878888888876
No 240
>KOG4058|consensus
Probab=97.19 E-value=0.0011 Score=54.08 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHhc--CCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q psy15742 174 VTPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250 (342)
Q Consensus 174 ~~~e~~~~~i~~~~--~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~ 250 (342)
.+.|++..- .+.+ ++..+.+|+|+|.|.+.+.+++.| ...+|+|+++-.+.+++-.+-+.|+.+...|..-|+.+.
T Consensus 56 AtteQv~nV-LSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 56 ATTEQVENV-LSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred ccHHHHHHH-HHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 344544333 3333 344689999999999999999986 788999999999999999999999988899999999877
Q ss_pred C
Q psy15742 251 A 251 (342)
Q Consensus 251 ~ 251 (342)
.
T Consensus 135 d 135 (199)
T KOG4058|consen 135 D 135 (199)
T ss_pred c
Confidence 5
No 241
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.16 E-value=0.0012 Score=61.91 Aligned_cols=73 Identities=23% Similarity=0.270 Sum_probs=57.7
Q ss_pred EEeccCCCcHHHHHHHHhCCEE-EEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEEcCCCCCCc
Q psy15742 193 VIDGFCGCGGNTIQFAAVCQKV-ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPPWGGPE 269 (342)
Q Consensus 193 vLDlgcGtG~~~~~~a~~~~~v-~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~nPP~~~~~ 269 (342)
|+|++||.|+++..+...|.++ .++|+++.+++.-+.|.. . .++.+|+.++.. -..+|+++..||+.+.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~------~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG------N-KVPFGDITKISPSDIPDFDILLGGFPCQPFS 73 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC------C-CCCccChhhhhhhhCCCcCEEEecCCCcccc
Confidence 5899999999999998877765 579999999999888863 2 445678877642 23689999999998876
Q ss_pred ccc
Q psy15742 270 YAR 272 (342)
Q Consensus 270 ~~~ 272 (342)
..+
T Consensus 74 ~ag 76 (315)
T TIGR00675 74 IAG 76 (315)
T ss_pred hhc
Confidence 444
No 242
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.14 E-value=0.0022 Score=55.66 Aligned_cols=91 Identities=14% Similarity=0.032 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCCCe-EEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---
Q psy15742 178 KVAQHIASRCKASDV-VIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--- 251 (342)
Q Consensus 178 ~~~~~i~~~~~~~~~-vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--- 251 (342)
-+++.+...+++... |||+|||||--+.++|+. .....-.|.++..+.-.+..+...++++-...+.-|+.+..
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~ 92 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW 92 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence 344444555555555 999999999999999997 56778899999998787887777777532334556665542
Q ss_pred ------CCCCccEEEEcCCCCCC
Q psy15742 252 ------PSLQGDVVFLSPPWGGP 268 (342)
Q Consensus 252 ------~~~~~D~Ii~nPP~~~~ 268 (342)
....||.|++---.|..
T Consensus 93 ~~~~~~~~~~~D~i~~~N~lHI~ 115 (204)
T PF06080_consen 93 ELPAPLSPESFDAIFCINMLHIS 115 (204)
T ss_pred ccccccCCCCcceeeehhHHHhc
Confidence 12479999985444443
No 243
>PHA01634 hypothetical protein
Probab=97.12 E-value=0.0024 Score=50.73 Aligned_cols=69 Identities=10% Similarity=0.168 Sum_probs=53.9
Q ss_pred CCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS 262 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n 262 (342)
+++|+|+|++.|..+++++.. +..|++++.++...+..++|++.+.+-++..- .. +|. .-+.||+.++|
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~-~~---eW~~~Y~~~Di~~iD 99 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVM-KG---EWNGEYEDVDIFVMD 99 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceee-cc---cccccCCCcceEEEE
Confidence 789999999999999999887 68899999999999999999988765322211 11 232 23478888886
No 244
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.11 E-value=0.0052 Score=55.91 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=63.6
Q ss_pred CCCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEE
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVF 260 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii 260 (342)
..-+|+|+.||.|.-.+.+... ..+|.-.|.|+..++..++-++..|+.+-++|.++|+++.. .....++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 4568999999999998888765 26899999999999999999999999866699999999863 123567877
Q ss_pred EcCCCC
Q psy15742 261 LSPPWG 266 (342)
Q Consensus 261 ~nPP~~ 266 (342)
+.--|.
T Consensus 215 VsGL~E 220 (311)
T PF12147_consen 215 VSGLYE 220 (311)
T ss_pred Eecchh
Confidence 754443
No 245
>KOG2361|consensus
Probab=97.10 E-value=0.0014 Score=57.77 Aligned_cols=68 Identities=16% Similarity=0.285 Sum_probs=51.7
Q ss_pred eEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-----CCCCCccEEEE
Q psy15742 192 VVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-----APSLQGDVVFL 261 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~-----~~~~~~D~Ii~ 261 (342)
+||++|||.|.....+.+. ...|+++|.|+.+++..+.|..... .++.....|+... +..+++|.|++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEE
Confidence 7999999999999999875 3789999999999999999876443 3555555555432 23457887765
No 246
>KOG2912|consensus
Probab=97.08 E-value=0.0031 Score=57.73 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=56.3
Q ss_pred eccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc--------cCCCCCccEEEEc
Q psy15742 195 DGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA--------LAPSLQGDVVFLS 262 (342)
Q Consensus 195 DlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~--------~~~~~~~D~Ii~n 262 (342)
-+--|||..+++.+.+ ++...++|++.-..+.|..|...+++++.+.+++....+ ..++..||++.||
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 3334566666666553 688999999999999999999999998888887764322 2233469999999
Q ss_pred CCCCCC
Q psy15742 263 PPWGGP 268 (342)
Q Consensus 263 PP~~~~ 268 (342)
|||-..
T Consensus 186 PPFfe~ 191 (419)
T KOG2912|consen 186 PPFFEN 191 (419)
T ss_pred Cchhhc
Confidence 999764
No 247
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.99 E-value=0.0031 Score=58.43 Aligned_cols=75 Identities=24% Similarity=0.387 Sum_probs=57.2
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-------CCCCccE
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDV 258 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-------~~~~~D~ 258 (342)
+++..++|..-|.|+.+..+.+. ..+++|+|.|+.+++.|++++... .+++.++++++.++. ....+|.
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~~dg 96 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINKVDG 96 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-EEE
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCccCE
Confidence 45779999999999999999876 689999999999999999988755 358999999988763 2247999
Q ss_pred EEEcCC
Q psy15742 259 VFLSPP 264 (342)
Q Consensus 259 Ii~nPP 264 (342)
|++|.=
T Consensus 97 iL~DLG 102 (310)
T PF01795_consen 97 ILFDLG 102 (310)
T ss_dssp EEEE-S
T ss_pred EEEccc
Confidence 999843
No 248
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.92 E-value=0.0042 Score=57.03 Aligned_cols=73 Identities=19% Similarity=0.154 Sum_probs=46.1
Q ss_pred CCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n 262 (342)
..+|||+|||+|+....+... -..++++|.|+.|++.++.-++...-.....+......+..+....|+|++.
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s 109 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIAS 109 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEe
Confidence 569999999999876555443 4679999999999999998765432111111111111112222345999984
No 249
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.91 E-value=0.0037 Score=58.96 Aligned_cols=77 Identities=29% Similarity=0.325 Sum_probs=61.7
Q ss_pred CCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC----CccEEEEcCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL----QGDVVFLSPP 264 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~----~~D~Ii~nPP 264 (342)
..+++|++||.|++.+.+...|. -+.++|+++.+++.-+.|... ..++..|+.+..... .+|+++.-||
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence 34799999999999999988764 568999999999998888742 457778887665322 7999999999
Q ss_pred CCCCcccc
Q psy15742 265 WGGPEYAR 272 (342)
Q Consensus 265 ~~~~~~~~ 272 (342)
+.+.+..+
T Consensus 77 CQ~FS~aG 84 (328)
T COG0270 77 CQDFSIAG 84 (328)
T ss_pred CcchhhcC
Confidence 99876655
No 250
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.86 E-value=0.005 Score=55.24 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=56.7
Q ss_pred cccCCCCCCHHHHHHHHHHh-----c-CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q psy15742 167 VIDGWYSVTPEKVAQHIASR-----C-KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKI 240 (342)
Q Consensus 167 ~~~~~~~~~~e~~~~~i~~~-----~-~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i 240 (342)
+.++.|-.+.++..+.+... . ....++||+|+|.|..+..++....+|++.|.|+.|... ++..|.
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~r----L~~kg~---- 137 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWR----LSKKGF---- 137 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHH----HHhCCC----
Confidence 34444555555555554432 1 135689999999999999999998999999999998544 443454
Q ss_pred EEEEccccccC-CCCCccEEEE
Q psy15742 241 QFIQGDFFALA-PSLQGDVVFL 261 (342)
Q Consensus 241 ~~~~~D~~~~~-~~~~~D~Ii~ 261 (342)
+++ |..++. .+.+||+|.|
T Consensus 138 ~vl--~~~~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 138 TVL--DIDDWQQTDFKFDVISC 157 (265)
T ss_pred eEE--ehhhhhccCCceEEEee
Confidence 233 222333 2348999987
No 251
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.85 E-value=0.0078 Score=55.02 Aligned_cols=73 Identities=26% Similarity=0.476 Sum_probs=61.4
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------CCCCccE
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDV 258 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~~~~~D~ 258 (342)
++++..+|..-|.|+.+..+.... .+++|+|.|+.+++.|++.+..++ +++.++++++.++. ...++|-
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~i~~vDG 99 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELGIGKVDG 99 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcCCCceeE
Confidence 457799999999999999998873 679999999999999999998776 58999999887653 2347788
Q ss_pred EEEc
Q psy15742 259 VFLS 262 (342)
Q Consensus 259 Ii~n 262 (342)
|+.|
T Consensus 100 iL~D 103 (314)
T COG0275 100 ILLD 103 (314)
T ss_pred EEEe
Confidence 8776
No 252
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.83 E-value=0.0012 Score=57.27 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=48.8
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG 266 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~ 266 (342)
+++..|.|+|||.+.++..+. .+..|...|+-.. +-.++.+|+.+.| ++...|++|..-.--
T Consensus 71 ~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~----------------n~~Vtacdia~vPL~~~svDv~VfcLSLM 133 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP----------------NPRVTACDIANVPLEDESVDVAVFCLSLM 133 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH---S---EEEEESS-S----------------STTEEES-TTS-S--TT-EEEEEEES---
T ss_pred CCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC----------------CCCEEEecCccCcCCCCceeEEEEEhhhh
Confidence 446689999999999985542 4578999998651 2247789998887 667999999988888
Q ss_pred CCccccccccccccCcCCCCchhhhHhhhcc
Q psy15742 267 GPEYARSSFSIDNIFPEQGGGRRLFQVARGI 297 (342)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (342)
|.++........++++. +|.+.+.+...++
T Consensus 134 GTn~~~fi~EA~RvLK~-~G~L~IAEV~SRf 163 (219)
T PF05148_consen 134 GTNWPDFIREANRVLKP-GGILKIAEVKSRF 163 (219)
T ss_dssp SS-HHHHHHHHHHHEEE-EEEEEEEEEGGG-
T ss_pred CCCcHHHHHHHHheecc-CcEEEEEEecccC
Confidence 88776544444444432 1333444444333
No 253
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.66 E-value=0.0033 Score=52.86 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=38.4
Q ss_pred EEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742 215 ISIDIDPAKLRLAQHNASVYG--VSHKIQFIQGDFFALA-PSLQGDVVFLS 262 (342)
Q Consensus 215 ~gvD~s~~~l~~a~~n~~~~g--l~~~i~~~~~D~~~~~-~~~~~D~Ii~n 262 (342)
+|+|+|++|++.|+++.+..+ ...+++++++|+.+++ ++++||+|++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~ 51 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMG 51 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEec
Confidence 589999999999988765332 2247999999999886 45589999985
No 254
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.63 E-value=0.0007 Score=52.56 Aligned_cols=70 Identities=27% Similarity=0.299 Sum_probs=26.9
Q ss_pred EeccCCCcHHHHHHHHh---C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcCC
Q psy15742 194 IDGFCGCGGNTIQFAAV---C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPP 264 (342)
Q Consensus 194 LDlgcGtG~~~~~~a~~---~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nPP 264 (342)
||+|+..|..+..+++. . .+++++|..+. .+.++++++..++.++++++++|..+.. +..++|+|++|-+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 58999999999888764 2 37999999996 4445555555677678999999997664 2358999999865
No 255
>KOG1501|consensus
Probab=96.62 E-value=0.0039 Score=59.42 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=51.8
Q ss_pred eEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q psy15742 192 VVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 249 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~ 249 (342)
.|||+|+|||.++..+++. +-+|+++|.=..|.+.|++-...+|.+++|+++.--..+
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 6899999999999999987 678999999999999999999999999999888754443
No 256
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.56 E-value=0.0058 Score=53.46 Aligned_cols=132 Identities=11% Similarity=-0.002 Sum_probs=76.5
Q ss_pred CCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC-CCccEEEEcCCCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-LQGDVVFLSPPWGG 267 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~-~~~D~Ii~nPP~~~ 267 (342)
..+.||.|||.|.++-.+... ..+|.-||.++..++.|++.+...+ ..-.++++..+.++.|. .+||+|.+.=--++
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 468999999999999877554 8899999999999999998775421 12467888888888765 69999999311111
Q ss_pred CccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCH-----------------HHHHHhh-CCCcEEEEecc
Q psy15742 268 PEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDV-----------------FEIFHDS-GKKGSFISLTG 329 (342)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------~~l~~~~-~~~~~i~~i~~ 329 (342)
.+. .++ ...+..|...+.+++++++-.|... ..+..++ ..|.+++....
T Consensus 135 LTD----~dl---------v~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 135 LTD----EDL---------VAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEK 201 (218)
T ss_dssp S-H----HHH---------HHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred CCH----HHH---------HHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence 110 111 1144456666666666665222211 1222222 36889999999
Q ss_pred cCCCCC
Q psy15742 330 RQMFSP 335 (342)
Q Consensus 330 ~~~fp~ 335 (342)
+.-||.
T Consensus 202 Q~~fP~ 207 (218)
T PF05891_consen 202 QKGFPK 207 (218)
T ss_dssp -TT--T
T ss_pred ccCCCc
Confidence 988887
No 257
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.53 E-value=0.012 Score=55.02 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=52.1
Q ss_pred HHHHHhcCCCCeEEeccCCCcHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEcccccc
Q psy15742 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFAL 250 (342)
Q Consensus 181 ~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~------~~~v~gvD~s~~~l~~a~~n~~~~gl~~-~i~~~~~D~~~~ 250 (342)
..|...++++..++|+|||+|.-+..+.+. ....+++|+|..+++.+..++.....+. .+.-+++|+.+.
T Consensus 68 ~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 455666777889999999999975554332 4678999999999999999998434321 345589998764
No 258
>KOG3045|consensus
Probab=96.48 E-value=0.0016 Score=58.01 Aligned_cols=82 Identities=21% Similarity=0.203 Sum_probs=59.2
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q psy15742 170 GWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 249 (342)
Q Consensus 170 ~~~~~~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~ 249 (342)
.|-......+++.|..+ +....|.|+|||-+-++. .....|.+.|+-+ .+-.++.+|+.+
T Consensus 162 kWP~nPld~ii~~ik~r-~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------------~~~~V~~cDm~~ 221 (325)
T KOG3045|consen 162 KWPENPLDVIIRKIKRR-PKNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------------VNERVIACDMRN 221 (325)
T ss_pred hCCCChHHHHHHHHHhC-cCceEEEecccchhhhhh---ccccceeeeeeec----------------CCCceeeccccC
Confidence 45554446666666655 344588999999997765 3467899999754 145788999999
Q ss_pred cC-CCCCccEEEEcCCCCCCccc
Q psy15742 250 LA-PSLQGDVVFLSPPWGGPEYA 271 (342)
Q Consensus 250 ~~-~~~~~D~Ii~nPP~~~~~~~ 271 (342)
.+ ++.+.|++|..-...|.+..
T Consensus 222 vPl~d~svDvaV~CLSLMgtn~~ 244 (325)
T KOG3045|consen 222 VPLEDESVDVAVFCLSLMGTNLA 244 (325)
T ss_pred CcCccCcccEEEeeHhhhcccHH
Confidence 87 66799999987777776543
No 259
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.42 E-value=0.0073 Score=54.36 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=64.1
Q ss_pred CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC---CCccEEEEcCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS---LQGDVVFLSPP 264 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~---~~~D~Ii~nPP 264 (342)
|+.|+-+| -.-..++++|.- ..+|.-+|+++..+....+-++..|+ ++++.+.-|..+..|. .+||+++.|||
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp 230 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRKFDVFITDPP 230 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHHHhhCCeeecCch
Confidence 66798888 556667776654 78999999999999999999999999 4799999999988754 48999999999
Q ss_pred CCC
Q psy15742 265 WGG 267 (342)
Q Consensus 265 ~~~ 267 (342)
+.-
T Consensus 231 eTi 233 (354)
T COG1568 231 ETI 233 (354)
T ss_pred hhH
Confidence 753
No 260
>KOG2940|consensus
Probab=96.36 E-value=0.0066 Score=53.23 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=60.0
Q ss_pred CCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGG 267 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~~ 267 (342)
-..++|+|||.|.+...+... ..+++-+|.|..|++.++.. +..++ .+....+|-..++ .++++|+|++.-.-+.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhhhhh
Confidence 347999999999999998766 56889999999999988764 22444 4556667765554 4568999999877666
Q ss_pred Ccccc
Q psy15742 268 PEYAR 272 (342)
Q Consensus 268 ~~~~~ 272 (342)
.+..+
T Consensus 150 ~NdLP 154 (325)
T KOG2940|consen 150 TNDLP 154 (325)
T ss_pred hccCc
Confidence 65444
No 261
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.32 E-value=0.013 Score=53.50 Aligned_cols=74 Identities=30% Similarity=0.331 Sum_probs=46.2
Q ss_pred CCeEEeccCC-CcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEEccccccCC-CCCccEEEEcC
Q psy15742 190 SDVVIDGFCG-CGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNAS-VYGVSHKIQFIQGDFFALAP-SLQGDVVFLSP 263 (342)
Q Consensus 190 ~~~vLDlgcG-tG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~-~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nP 263 (342)
+.+|+=+||| --..++.+++. +..|+++|+|+++++.+++-++ ..|+..+++|+.+|..+... -..||+|+.--
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 3599999999 45566677754 5679999999999999998777 56777789999999987753 35899999853
No 262
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.29 E-value=0.0024 Score=56.41 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=55.8
Q ss_pred CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEE-EEEccccccCC---CCCccEEEEcC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQ-FIQGDFFALAP---SLQGDVVFLSP 263 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~-~~~~D~~~~~~---~~~~D~Ii~nP 263 (342)
+|..+||+|+.||+|+-.+.+. +.+|+|+|.....+.|--++= +++. +...|+..+.+ ....|++++|-
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d------~rV~~~E~tN~r~l~~~~~~~~~d~~v~Dv 152 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND------PRVIVLERTNVRYLTPEDFTEKPDLIVIDV 152 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC------CcEEEEecCChhhCCHHHcccCCCeEEEEe
Confidence 5889999999999999999988 789999999998887754431 2443 34456655432 23689999998
Q ss_pred CCCCC
Q psy15742 264 PWGGP 268 (342)
Q Consensus 264 P~~~~ 268 (342)
.|...
T Consensus 153 SFISL 157 (245)
T COG1189 153 SFISL 157 (245)
T ss_pred ehhhH
Confidence 88754
No 263
>PRK10458 DNA cytosine methylase; Provisional
Probab=96.20 E-value=0.019 Score=56.44 Aligned_cols=80 Identities=20% Similarity=0.147 Sum_probs=58.2
Q ss_pred CCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----------------
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---------------- 252 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~---------------- 252 (342)
.-+++|+|||.|+++..+-..|. .|.++|+++.+.+.-+.|.... +....+.+|+.++..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhhh
Confidence 44899999999999999977654 5688999999988888875211 123445566665531
Q ss_pred --CCCccEEEEcCCCCCCcccc
Q psy15742 253 --SLQGDVVFLSPPWGGPEYAR 272 (342)
Q Consensus 253 --~~~~D~Ii~nPP~~~~~~~~ 272 (342)
...+|+++..||+.+-+..+
T Consensus 165 ~~~p~~DvL~gGpPCQ~FS~AG 186 (467)
T PRK10458 165 QHIPDHDVLLAGFPCQPFSLAG 186 (467)
T ss_pred ccCCCCCEEEEcCCCCccchhc
Confidence 12589999999999766543
No 264
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.19 E-value=0.0081 Score=55.33 Aligned_cols=103 Identities=18% Similarity=0.131 Sum_probs=64.7
Q ss_pred CCeEEeccCCCcHHH----HHHHHh------CCEEEEEeCCHHHHHHHHHHHHH-----------------------cC-
Q psy15742 190 SDVVIDGFCGCGGNT----IQFAAV------CQKVISIDIDPAKLRLAQHNASV-----------------------YG- 235 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~----~~~a~~------~~~v~gvD~s~~~l~~a~~n~~~-----------------------~g- 235 (342)
.-+|+..||+||-=. +.+.+. ..+|+|+|+|+.+++.|++-.-. .|
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999743 333332 25799999999999999876300 01
Q ss_pred ------CCCcEEEEEccccccC--CCCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742 236 ------VSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL 305 (342)
Q Consensus 236 ------l~~~i~~~~~D~~~~~--~~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (342)
+...|+|.+.|+.+.+ +.+.||+|+|---+...+.. . -...+..+...+.|++.+++
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~----~---------~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKT----T---------QERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHH----H---------HHHHHHHHHHHhCCCcEEEE
Confidence 1246788888988743 34689999993222111100 0 01144456666777777766
No 265
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.15 E-value=0.015 Score=56.76 Aligned_cols=95 Identities=25% Similarity=0.238 Sum_probs=56.4
Q ss_pred CeEEeccCCCcHHHHHHHHhCCEEEEE---eCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742 191 DVVIDGFCGCGGNTIQFAAVCQKVISI---DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG 266 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~~~~~v~gv---D~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~ 266 (342)
..+||+|||+|+++.++...+..+.++ |..+..++.|.+. |++.-+. ..-...++ +++.||+|-|.=-.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~--~~~s~rLPfp~~~fDmvHcsrc~- 191 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER----GVPAMIG--VLGSQRLPFPSNAFDMVHCSRCL- 191 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc----Ccchhhh--hhccccccCCccchhhhhccccc-
Confidence 368999999999999999887655444 3444455555433 5532111 11112333 66789999763111
Q ss_pred CCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742 267 GPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL 305 (342)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (342)
-.+.+. +++.+++.-+.+.+++.+++
T Consensus 192 -----------i~W~~~--~g~~l~evdRvLRpGGyfv~ 217 (506)
T PF03141_consen 192 -----------IPWHPN--DGFLLFEVDRVLRPGGYFVL 217 (506)
T ss_pred -----------ccchhc--ccceeehhhhhhccCceEEe
Confidence 112233 45666777777777777766
No 266
>KOG1253|consensus
Probab=96.14 E-value=0.0027 Score=61.41 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=68.8
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEE
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVV 259 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~I 259 (342)
.++-+|||..|+||.-++..|+. ...|++.|.++.+++..+.|++.|++++.++..+.|+.... ....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 34678999999999999999986 56899999999999999999999999888899999987654 23589999
Q ss_pred EEcCCCCCC
Q psy15742 260 FLSPPWGGP 268 (342)
Q Consensus 260 i~nPP~~~~ 268 (342)
=+| ||+..
T Consensus 188 DLD-PyGs~ 195 (525)
T KOG1253|consen 188 DLD-PYGSP 195 (525)
T ss_pred ecC-CCCCc
Confidence 999 56654
No 267
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.07 E-value=0.0091 Score=51.93 Aligned_cols=72 Identities=18% Similarity=0.352 Sum_probs=43.1
Q ss_pred CCeEEeccCCCcHH----HHHHHHh-------CCEEEEEeCCHHHHHHHHHHH--------------HHc-----C----
Q psy15742 190 SDVVIDGFCGCGGN----TIQFAAV-------CQKVISIDIDPAKLRLAQHNA--------------SVY-----G---- 235 (342)
Q Consensus 190 ~~~vLDlgcGtG~~----~~~~a~~-------~~~v~gvD~s~~~l~~a~~n~--------------~~~-----g---- 235 (342)
.-+|+..||+||-= ++.+... ..+|+|.|+|+.+++.|++-. +++ |
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 45899999999974 3333341 258999999999999997532 111 1
Q ss_pred ----CCCcEEEEEccccc-cCCCCCccEEEE
Q psy15742 236 ----VSHKIQFIQGDFFA-LAPSLQGDVVFL 261 (342)
Q Consensus 236 ----l~~~i~~~~~D~~~-~~~~~~~D~Ii~ 261 (342)
+..+++|.+.|+.+ .+..+.||+|+|
T Consensus 112 v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~C 142 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPDPPFGRFDLIFC 142 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S------EEEEEE
T ss_pred EChHHcCceEEEecccCCCCcccCCccEEEe
Confidence 11468899999998 455678999999
No 268
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.01 E-value=0.1 Score=45.92 Aligned_cols=75 Identities=17% Similarity=0.078 Sum_probs=53.9
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVV 259 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~I 259 (342)
+++|.+||-+|+.+|+..-+++.- ...|+|||.|+...+..-.-++.. .|+-.+.+|+.... --...|+|
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhcccccccEE
Confidence 457899999999999999999885 458999999997765555433332 38889999998653 12389999
Q ss_pred EEcCC
Q psy15742 260 FLSPP 264 (342)
Q Consensus 260 i~nPP 264 (342)
++|-+
T Consensus 148 ~~DVa 152 (229)
T PF01269_consen 148 FQDVA 152 (229)
T ss_dssp EEE-S
T ss_pred EecCC
Confidence 99977
No 269
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.84 E-value=0.033 Score=51.46 Aligned_cols=57 Identities=23% Similarity=0.369 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc
Q psy15742 178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY 234 (342)
Q Consensus 178 ~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~ 234 (342)
.+.+.+.....+++.|+|+++|+|+.++.+...+...+|+|+++..++.+.+.+...
T Consensus 211 l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 211 LIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 333444455668999999999999999999888999999999999999999998754
No 270
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.82 E-value=0.066 Score=42.70 Aligned_cols=72 Identities=26% Similarity=0.350 Sum_probs=48.8
Q ss_pred EEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc--cC-CC-CCccEEEEcCCC
Q psy15742 193 VIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA--LA-PS-LQGDVVFLSPPW 265 (342)
Q Consensus 193 vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~--~~-~~-~~~D~Ii~nPP~ 265 (342)
++|+|||+|... .++.. +..++|+|.++.++..++......+. ..+.+..+|... .. .. ..||++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 33333 24899999999999986655433221 116788888776 33 22 379999555443
Q ss_pred C
Q psy15742 266 G 266 (342)
Q Consensus 266 ~ 266 (342)
.
T Consensus 130 ~ 130 (257)
T COG0500 130 H 130 (257)
T ss_pred h
Confidence 3
No 271
>KOG2198|consensus
Probab=95.70 E-value=0.04 Score=51.80 Aligned_cols=91 Identities=23% Similarity=0.303 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCC------EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC
Q psy15742 178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ------KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA 251 (342)
Q Consensus 178 ~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~------~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~ 251 (342)
+++.-+.-.++++.+|||+|+-.|+-++.+.+..+ .|++-|.++..+.+..+.+....- .+..+...|+..++
T Consensus 144 SmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p 222 (375)
T KOG2198|consen 144 SMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFP 222 (375)
T ss_pred hccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceecc
Confidence 34444444567899999999999999988876532 899999999999999998854432 35555665554443
Q ss_pred ----------CCCCccEEEEcCCCCCCc
Q psy15742 252 ----------PSLQGDVVFLSPPWGGPE 269 (342)
Q Consensus 252 ----------~~~~~D~Ii~nPP~~~~~ 269 (342)
....||-|++|-|+.+-.
T Consensus 223 ~~~~~~~~~~~~~~fDrVLvDVPCS~Dg 250 (375)
T KOG2198|consen 223 NIYLKDGNDKEQLKFDRVLVDVPCSGDG 250 (375)
T ss_pred ccccccCchhhhhhcceeEEecccCCCc
Confidence 123799999999999864
No 272
>KOG1269|consensus
Probab=95.06 E-value=0.053 Score=51.67 Aligned_cols=79 Identities=22% Similarity=0.209 Sum_probs=66.0
Q ss_pred HHHhcCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEE
Q psy15742 183 IASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVF 260 (342)
Q Consensus 183 i~~~~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii 260 (342)
+...+.++..++|+|||.|....+.+.. +..++|+|.++..+..+.......++.++..++.+|+.+.+ ++..||.+-
T Consensus 104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~ 183 (364)
T KOG1269|consen 104 LRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVR 183 (364)
T ss_pred HhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEE
Confidence 3444567778999999999999999987 68999999999999988888888888777778888988875 567888886
Q ss_pred E
Q psy15742 261 L 261 (342)
Q Consensus 261 ~ 261 (342)
+
T Consensus 184 ~ 184 (364)
T KOG1269|consen 184 F 184 (364)
T ss_pred E
Confidence 4
No 273
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.00 E-value=0.053 Score=49.41 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=62.0
Q ss_pred CCeEEeccCCCcH----HHHHHHHh-------CCEEEEEeCCHHHHHHHHHHHHH-----cCC-----------------
Q psy15742 190 SDVVIDGFCGCGG----NTIQFAAV-------CQKVISIDIDPAKLRLAQHNASV-----YGV----------------- 236 (342)
Q Consensus 190 ~~~vLDlgcGtG~----~~~~~a~~-------~~~v~gvD~s~~~l~~a~~n~~~-----~gl----------------- 236 (342)
.-+|+-.||+||- +++.+.+. ..+|+|.|+|..+++.|+.-.-. .++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5689999999996 34444332 36899999999999999742211 111
Q ss_pred ------CCcEEEEEccccccC-CCCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742 237 ------SHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL 305 (342)
Q Consensus 237 ------~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (342)
...|.|.+.|+.+-. ..+.||+|+| +.-.-|-.... -...+..+...+.+++++++
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC---RNVLIYFd~~~----------q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC---RNVLIYFDEET----------QERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEE---cceEEeeCHHH----------HHHHHHHHHHHhCCCCEEEE
Confidence 123566666766554 4557999998 22211111000 11134445666777777776
No 274
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=94.81 E-value=0.12 Score=43.54 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=53.5
Q ss_pred CCCCC-HHHHHHHHHHhcCCCCeEEeccCCCcHHHHHH-HHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q psy15742 171 WYSVT-PEKVAQHIASRCKASDVVIDGFCGCGGNTIQF-AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF 248 (342)
Q Consensus 171 ~~~~~-~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~-a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~ 248 (342)
||... .+.+++.+.+...++.+|+-+||=|-...+.- .....+++-.|.|..-- ..| ++ +|+.-|..
T Consensus 6 wYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~--------~~~--~~-~F~fyD~~ 74 (162)
T PF10237_consen 6 WYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFE--------QFG--GD-EFVFYDYN 74 (162)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHH--------hcC--Cc-ceEECCCC
Confidence 44432 24445555555556779998888777666555 11367899999997422 222 23 46666655
Q ss_pred ccC--C---CCCccEEEEcCCCC
Q psy15742 249 ALA--P---SLQGDVVFLSPPWG 266 (342)
Q Consensus 249 ~~~--~---~~~~D~Ii~nPP~~ 266 (342)
+.. + .++||+|++||||-
T Consensus 75 ~p~~~~~~l~~~~d~vv~DPPFl 97 (162)
T PF10237_consen 75 EPEELPEELKGKFDVVVIDPPFL 97 (162)
T ss_pred ChhhhhhhcCCCceEEEECCCCC
Confidence 432 1 35899999999994
No 275
>KOG4589|consensus
Probab=94.76 E-value=0.072 Score=45.45 Aligned_cols=66 Identities=21% Similarity=0.169 Sum_probs=48.2
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-ccccc---------CCC
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG-DFFAL---------APS 253 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~-D~~~~---------~~~ 253 (342)
++++.+|||+||..|..+.-+-+. ...|.|||+-+- . .. ..+.++++ |+.+. +++
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~---p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------E---PP-EGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------c---CC-CCcccccccccCCHHHHHHHHHhCCC
Confidence 467999999999999999887776 468999998541 1 11 24566666 66543 366
Q ss_pred CCccEEEEcCC
Q psy15742 254 LQGDVVFLSPP 264 (342)
Q Consensus 254 ~~~D~Ii~nPP 264 (342)
...|+|++|-.
T Consensus 135 r~VdvVlSDMa 145 (232)
T KOG4589|consen 135 RPVDVVLSDMA 145 (232)
T ss_pred CcccEEEeccC
Confidence 78999999843
No 276
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.72 E-value=0.1 Score=42.64 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=41.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcCCCCC
Q psy15742 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPPWGG 267 (342)
Q Consensus 213 ~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nPP~~~ 267 (342)
+|+|+|+.+++++.++++++..++.+++++++.+-.++. +.+++|+++.|-=|-.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLP 58 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLP 58 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-C
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCC
Confidence 589999999999999999999999888999998766553 3458999999854433
No 277
>KOG3115|consensus
Probab=94.71 E-value=0.045 Score=47.26 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=51.0
Q ss_pred CeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCC------CCcEEEEEccccccCCC
Q psy15742 191 DVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGV------SHKIQFIQGDFFALAPS 253 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl------~~~i~~~~~D~~~~~~~ 253 (342)
-.+.|+|||-|++.+.++.. ..-+.|.|+--...++.+++++..+- -.++.+.+.+++.+.++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn 132 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPN 132 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccc
Confidence 46999999999999999987 56789999988888888888876541 24678888888887654
No 278
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=94.67 E-value=0.059 Score=48.65 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=36.4
Q ss_pred HHHHHHHHhcC--CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHH
Q psy15742 178 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 228 (342)
Q Consensus 178 ~~~~~i~~~~~--~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~ 228 (342)
.++..|.+.++ +..+++|++||+|.++..+...+..|+.-|+++..+...+
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK 59 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence 34566666666 5789999999999999998778899999999998776665
No 279
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.38 E-value=0.034 Score=42.96 Aligned_cols=32 Identities=19% Similarity=0.050 Sum_probs=28.0
Q ss_pred CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCH
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP 221 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~ 221 (342)
...++|+|||.|.+.--+.+.|..-.|+|.-.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 44799999999999988888899999999754
No 280
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.24 E-value=0.24 Score=45.17 Aligned_cols=40 Identities=15% Similarity=-0.009 Sum_probs=36.0
Q ss_pred CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQH 229 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~ 229 (342)
+.+||-+|||.|.++..+|..|..+.|.|.|--|+-..+-
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNF 96 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHH
Confidence 5689999999999999999999999999999999765544
No 281
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.44 E-value=0.51 Score=40.89 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=58.8
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----CCCccEEE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVF 260 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----~~~~D~Ii 260 (342)
+++|.+||=+|+.+|+..-+.+.- ...++|||.|+...+..-.-++.. +|+-.+.+|+..... -...|+|+
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccEEE
Confidence 457999999999999999999886 367999999998876665555443 478889999976431 13699999
Q ss_pred EcCC
Q psy15742 261 LSPP 264 (342)
Q Consensus 261 ~nPP 264 (342)
.|-.
T Consensus 151 ~DVA 154 (231)
T COG1889 151 QDVA 154 (231)
T ss_pred EecC
Confidence 9865
No 282
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.30 E-value=0.22 Score=43.45 Aligned_cols=73 Identities=30% Similarity=0.367 Sum_probs=41.6
Q ss_pred CCeEEeccCCCcHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~------~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---------~~~ 254 (342)
++.|+++|.-.|+.++.+|.. ..+|+|||++...... ...+.+.+.+++++++||..+.. ...
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 569999999999999998863 3799999996543322 22233445569999999987642 122
Q ss_pred CccEEEEcCC
Q psy15742 255 QGDVVFLSPP 264 (342)
Q Consensus 255 ~~D~Ii~nPP 264 (342)
...+|+.|--
T Consensus 111 ~~vlVilDs~ 120 (206)
T PF04989_consen 111 HPVLVILDSS 120 (206)
T ss_dssp SSEEEEESS-
T ss_pred CceEEEECCC
Confidence 4557777644
No 283
>KOG1709|consensus
Probab=92.90 E-value=0.77 Score=40.23 Aligned_cols=73 Identities=12% Similarity=0.122 Sum_probs=54.9
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---CCCCCccEEEEc
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGDVVFLS 262 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~---~~~~~~D~Ii~n 262 (342)
.+|.+||++|-|.|...-.+.+. -..=+-+|..+..++..+++.-.. .+++.+..+-+.+. ++++.||-|+-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEee
Confidence 45889999999999988877665 334466899999998877765332 24777877765554 466789999987
No 284
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=92.77 E-value=0.6 Score=41.68 Aligned_cols=79 Identities=16% Similarity=0.342 Sum_probs=64.5
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-----CCCCCccEEEE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-----APSLQGDVVFL 261 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~-----~~~~~~D~Ii~ 261 (342)
++++.. +..+||+-.++..+.+..-+..++|+.+.-....+.|+. + +.++++.++|-+.. ++..+=-+|++
T Consensus 87 lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~--~-d~~vrv~~~DG~~~l~a~LPP~erRglVLI 162 (279)
T COG2961 87 LNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFA--G-DRRVRVLRGDGFLALKAHLPPKERRGLVLI 162 (279)
T ss_pred hCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhC--C-CcceEEEecCcHHHHhhhCCCCCcceEEEe
Confidence 445544 899999999999998888899999999999999999986 3 24899999998754 34456789999
Q ss_pred cCCCCCCc
Q psy15742 262 SPPWGGPE 269 (342)
Q Consensus 262 nPP~~~~~ 269 (342)
||||...+
T Consensus 163 DPPfE~~~ 170 (279)
T COG2961 163 DPPFELKD 170 (279)
T ss_pred CCCccccc
Confidence 99998764
No 285
>KOG3178|consensus
Probab=92.71 E-value=0.6 Score=43.78 Aligned_cols=65 Identities=22% Similarity=0.362 Sum_probs=54.8
Q ss_pred CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL 261 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~ 261 (342)
-...+|+|.|.|..+-.+.....+|-+++.+..-+-.++.++. .| |+.+-+|.++-.|. -|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P~--~daI~m 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTPK--GDAIWM 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC----cceecccccccCCC--cCeEEE
Confidence 3689999999999999999887789999999999998888875 44 67888999877554 568887
No 286
>KOG2360|consensus
Probab=92.69 E-value=0.28 Score=46.46 Aligned_cols=84 Identities=23% Similarity=0.386 Sum_probs=69.4
Q ss_pred CCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CC--CCccEEEE
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PS--LQGDVVFL 261 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~--~~~D~Ii~ 261 (342)
.+|.+|+|.+|-.|.-+.++|.- -.++.|+|.+....+..+.-++..|.+ .++.+.+|+...+ +. ...-.|++
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t~~~~~~~~v~~iL~ 290 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNTATPEKFRDVTYILV 290 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCCCCcccccceeEEEe
Confidence 46789999999999999998874 468999999999999999999999984 6788899998853 21 24678999
Q ss_pred cCCCCCCcccc
Q psy15742 262 SPPWGGPEYAR 272 (342)
Q Consensus 262 nPP~~~~~~~~ 272 (342)
||+..|.....
T Consensus 291 DpscSgSgm~~ 301 (413)
T KOG2360|consen 291 DPSCSGSGMVS 301 (413)
T ss_pred CCCCCCCcccc
Confidence 99999875444
No 287
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=92.62 E-value=1.1 Score=39.30 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=53.4
Q ss_pred CCeEEeccCCCc----HHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc-cccCCC-CCccEEEE
Q psy15742 190 SDVVIDGFCGCG----GNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF-FALAPS-LQGDVVFL 261 (342)
Q Consensus 190 ~~~vLDlgcGtG----~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~-~~~~~~-~~~D~Ii~ 261 (342)
...+++..|+-| ++++.+|.+ |.++++|-.+++.+...++.+...|+.+.++|+.++. .+..+. ...|+++.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence 346888866543 233444433 8899999999999988999998888876689999885 344433 36899998
Q ss_pred cC
Q psy15742 262 SP 263 (342)
Q Consensus 262 nP 263 (342)
|=
T Consensus 122 Dc 123 (218)
T PF07279_consen 122 DC 123 (218)
T ss_pred eC
Confidence 63
No 288
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=91.71 E-value=0.32 Score=43.72 Aligned_cols=73 Identities=11% Similarity=0.282 Sum_probs=45.4
Q ss_pred EeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-----CCCCCccEEEEcCCCCCC
Q psy15742 194 IDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-----APSLQGDVVFLSPPWGGP 268 (342)
Q Consensus 194 LDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~-----~~~~~~D~Ii~nPP~~~~ 268 (342)
+..+.|+-.++..+.+..-+.+.+|+.++-.+..+.|+... .++++.+.|.++. ++..+=-+|++||||...
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~ 138 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQK 138 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----ST
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCc
Confidence 67888888888888888889999999999999999887642 4899999998874 344567799999999876
Q ss_pred c
Q psy15742 269 E 269 (342)
Q Consensus 269 ~ 269 (342)
+
T Consensus 139 ~ 139 (245)
T PF04378_consen 139 D 139 (245)
T ss_dssp T
T ss_pred h
Confidence 4
No 289
>KOG2651|consensus
Probab=91.52 E-value=0.57 Score=44.35 Aligned_cols=41 Identities=22% Similarity=0.092 Sum_probs=34.9
Q ss_pred CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQH 229 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~ 229 (342)
+-+.++|+|+|-|.++..++-+ +.+|.|||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 4468999999999999999876 9999999999777666654
No 290
>PRK11524 putative methyltransferase; Provisional
Probab=91.41 E-value=0.11 Score=47.93 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=24.9
Q ss_pred CcEEEEEccccccC---CCCCccEEEEcCCCCC
Q psy15742 238 HKIQFIQGDFFALA---PSLQGDVVFLSPPWGG 267 (342)
Q Consensus 238 ~~i~~~~~D~~~~~---~~~~~D~Ii~nPP~~~ 267 (342)
++.+++++|+.+.+ +++++|+|++||||..
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~ 39 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNI 39 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCccc
Confidence 35689999999863 5678999999999974
No 291
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.34 E-value=0.57 Score=42.23 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=57.8
Q ss_pred HhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEcC
Q psy15742 185 SRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSP 263 (342)
Q Consensus 185 ~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nP 263 (342)
+++.+|....|+|+..|+.+..+.+++..|++||.-+- ..++-.. +.++-...|-+++-| ....|..+||-
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~m-----a~sL~dt---g~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPM-----AQSLMDT---GQVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhcceEEEEeccchh-----hhhhhcc---cceeeeeccCcccccCCCCCceEEeeh
Confidence 45678999999999999999999999999999997652 2233333 368889999999976 55899999984
No 292
>KOG3987|consensus
Probab=91.17 E-value=0.059 Score=46.67 Aligned_cols=64 Identities=11% Similarity=0.110 Sum_probs=48.0
Q ss_pred ccccCCCCCCHHHHHHHHHHhc----CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Q psy15742 166 VVIDGWYSVTPEKVAQHIASRC----KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQH 229 (342)
Q Consensus 166 ~~~~~~~~~~~e~~~~~i~~~~----~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~ 229 (342)
.+.++.|-.++++..+.+...- ..+.++||+|+|.|-++..++....+|++.|.|..|....+.
T Consensus 85 lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 85 LGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKK 152 (288)
T ss_pred cccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhh
Confidence 3445556666666666655331 135689999999999999998887889999999999876654
No 293
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=91.13 E-value=0.4 Score=43.56 Aligned_cols=59 Identities=22% Similarity=0.205 Sum_probs=39.0
Q ss_pred CeEEeccCCCc--HHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q psy15742 191 DVVIDGFCGCG--GNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250 (342)
Q Consensus 191 ~~vLDlgcGtG--~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~ 250 (342)
..+||+|||-- ...-+.|+. ..+|+-||.+|-.+..++.-+..+.- +...++++|+.+.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p 133 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDP 133 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-H
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCH
Confidence 58999999943 355666664 78999999999999999988765432 2489999999875
No 294
>PRK13699 putative methylase; Provisional
Probab=90.44 E-value=0.13 Score=45.74 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=23.0
Q ss_pred EEEEEccccccC---CCCCccEEEEcCCCC
Q psy15742 240 IQFIQGDFFALA---PSLQGDVVFLSPPWG 266 (342)
Q Consensus 240 i~~~~~D~~~~~---~~~~~D~Ii~nPP~~ 266 (342)
++++++|+.+.+ ++.++|+|+.||||.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~ 31 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYL 31 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcc
Confidence 368899998763 678999999999996
No 295
>KOG2352|consensus
Probab=90.26 E-value=3 Score=40.92 Aligned_cols=78 Identities=17% Similarity=0.151 Sum_probs=58.4
Q ss_pred HHHhcCCCC-eEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEE
Q psy15742 183 IASRCKASD-VVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVV 259 (342)
Q Consensus 183 i~~~~~~~~-~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~I 259 (342)
+..++.+.. +++-+|||.-.++..+-+. ...|+.+|+|+-.++.....-... ..-.++...|+.... ++.+||+|
T Consensus 41 i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fedESFdiV 118 (482)
T KOG2352|consen 41 IMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFEDESFDIV 118 (482)
T ss_pred HHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCCcceeEE
Confidence 334444555 8999999999999888776 578999999999998776543221 135788999988775 66688888
Q ss_pred EEc
Q psy15742 260 FLS 262 (342)
Q Consensus 260 i~n 262 (342)
+.=
T Consensus 119 Idk 121 (482)
T KOG2352|consen 119 IDK 121 (482)
T ss_pred Eec
Confidence 763
No 296
>KOG3924|consensus
Probab=89.99 E-value=0.52 Score=44.84 Aligned_cols=88 Identities=24% Similarity=0.365 Sum_probs=60.9
Q ss_pred HHHHHHHHH-hcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc-------CC-CCcEEEEEc
Q psy15742 177 EKVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY-------GV-SHKIQFIQG 245 (342)
Q Consensus 177 e~~~~~i~~-~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~-------gl-~~~i~~~~~ 245 (342)
+++.+.+.+ .+++++.+.|+|.|.|.....+|.. ...-+|+++....-+.|..|...+ |- .+.++.+++
T Consensus 179 ~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~g 258 (419)
T KOG3924|consen 179 EQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHG 258 (419)
T ss_pred HHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccc
Confidence 444444443 3568899999999999999888876 456788888777766666665433 33 346888899
Q ss_pred cccccC----CCCCccEEEEcCC
Q psy15742 246 DFFALA----PSLQGDVVFLSPP 264 (342)
Q Consensus 246 D~~~~~----~~~~~D~Ii~nPP 264 (342)
++.+.. -....++|++|--
T Consensus 259 sf~~~~~v~eI~~eatvi~vNN~ 281 (419)
T KOG3924|consen 259 SFLDPKRVTEIQTEATVIFVNNV 281 (419)
T ss_pred ccCCHHHHHHHhhcceEEEEecc
Confidence 887642 1236788888643
No 297
>KOG2793|consensus
Probab=89.65 E-value=1.7 Score=39.12 Aligned_cols=77 Identities=12% Similarity=-0.023 Sum_probs=45.7
Q ss_pred CCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHc-----CCCCcEEEEEccccccCC----CCC-ccE
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVY-----GVSHKIQFIQGDFFALAP----SLQ-GDV 258 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~-----gl~~~i~~~~~D~~~~~~----~~~-~D~ 258 (342)
...||++|+|||..++.+|.. +..|.-.|... .+.....|...+ ++.+.+....-++.+.+. ... +|+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 457999999999999999985 77777777644 444444443333 222244444444433321 113 888
Q ss_pred EEE-cCCCCC
Q psy15742 259 VFL-SPPWGG 267 (342)
Q Consensus 259 Ii~-nPP~~~ 267 (342)
|++ |+=|..
T Consensus 166 ilasDvvy~~ 175 (248)
T KOG2793|consen 166 ILASDVVYEE 175 (248)
T ss_pred EEEeeeeecC
Confidence 885 444433
No 298
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.85 E-value=0.93 Score=41.47 Aligned_cols=91 Identities=19% Similarity=0.215 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCc-cEEEEcCCCCCCcccc--ccccccccCcCCCCchhhhHhh
Q psy15742 219 IDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQG-DVVFLSPPWGGPEYAR--SSFSIDNIFPEQGGGRRLFQVA 294 (342)
Q Consensus 219 ~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~-D~Ii~nPP~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 294 (342)
...+.+..+.+.++ ++++.++|+.+... ..+- |+|++||||.+.+-.. ....-..+.-. ....+.+.+
T Consensus 142 ~~~~~L~~~a~~l~------~~~i~~~df~~v~~~a~~~~dfvY~DPPY~~~s~t~~f~~Y~~~~f~~~--~~~~La~~~ 213 (274)
T COG0338 142 PEEENLKLFAEKLK------NATIENGDFEEVLADADSGDDFVYCDPPYLPLSATSNFTAYGGNGFTED--QHLRLAEVL 213 (274)
T ss_pred chHHHHHHHHHHHh------cCeEEcCCHHHHHhhccCCCcEEEeCCCCCccccccccccccCCCCChH--HHHHHHHHH
Confidence 34455666666654 58999999998864 2344 8999999999864321 11111111111 344667777
Q ss_pred hcc-CCCceeecCCCCCHHHHHHh
Q psy15742 295 RGI-SPNVGYYLPRTSDVFEIFHD 317 (342)
Q Consensus 295 ~~~-~~~~~~~l~~~~~~~~l~~~ 317 (342)
..+ ....+.++-+++.......+
T Consensus 214 ~~l~~~~~i~~~~sn~~~~~~~~l 237 (274)
T COG0338 214 KELEGKRGISVLDSNSDTEETREL 237 (274)
T ss_pred HhccccceEEEecCccchHHHHHH
Confidence 777 66677777666654444443
No 299
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=88.40 E-value=1.3 Score=35.46 Aligned_cols=71 Identities=21% Similarity=0.304 Sum_probs=37.0
Q ss_pred HHHHhcCCCCeEEeccCCCcH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccE
Q psy15742 182 HIASRCKASDVVIDGFCGCGG-NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDV 258 (342)
Q Consensus 182 ~i~~~~~~~~~vLDlgcGtG~-~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~ 258 (342)
.+....+.+ +++++|-|.=. .+..+++.|..|+++|+++. ++. . .+.++..|+++...+ ...|+
T Consensus 7 ~ia~~~~~~-kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-~----g~~~v~DDif~P~l~iY~~a~l 73 (127)
T PF03686_consen 7 YIARLNNYG-KIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-E----GVNFVVDDIFNPNLEIYEGADL 73 (127)
T ss_dssp HHHHHS-SS-EEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEE
T ss_pred HHHHhCCCC-cEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-c----CcceeeecccCCCHHHhcCCcE
Confidence 333333334 99999999655 45555666999999999986 332 3 456899999875311 36899
Q ss_pred EE-EcCCC
Q psy15742 259 VF-LSPPW 265 (342)
Q Consensus 259 Ii-~nPP~ 265 (342)
|. .+||-
T Consensus 74 IYSiRPP~ 81 (127)
T PF03686_consen 74 IYSIRPPP 81 (127)
T ss_dssp EEEES--T
T ss_pred EEEeCCCh
Confidence 98 57883
No 300
>KOG2920|consensus
Probab=88.21 E-value=0.46 Score=43.30 Aligned_cols=36 Identities=19% Similarity=0.102 Sum_probs=32.6
Q ss_pred CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHH
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKL 224 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l 224 (342)
.+++|||+|||+|..++.+...+ ..+...|.|...+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 58899999999999999998885 8899999998887
No 301
>KOG0919|consensus
Probab=87.59 E-value=0.33 Score=43.04 Aligned_cols=82 Identities=20% Similarity=0.264 Sum_probs=53.2
Q ss_pred CCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEEEc
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLS 262 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii~n 262 (342)
.-+|+++..|.|+.-..+-.. +.-|.++|+++.+-+.-..|...+ + ....|+..+. ...++|.+.++
T Consensus 3 pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~-L-----~k~~~I~~lt~kefd~l~~~m~lMS 76 (338)
T KOG0919|consen 3 PLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSN-L-----VKTRNIQSLTVKEFDKLQANMLLMS 76 (338)
T ss_pred ceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcccc-h-----hhccccceeeHhhhhhcccceEeeC
Confidence 458999999999987666543 567889999998887777763211 1 1111222111 23478999999
Q ss_pred CCCCCCccccccccc
Q psy15742 263 PPWGGPEYARSSFSI 277 (342)
Q Consensus 263 PP~~~~~~~~~~~~~ 277 (342)
||+...+..+...|+
T Consensus 77 PpCQPfTRiG~q~D~ 91 (338)
T KOG0919|consen 77 PPCQPFTRIGLQRDT 91 (338)
T ss_pred CCCCchhhhcccccc
Confidence 998876555544443
No 302
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=87.58 E-value=4.8 Score=33.93 Aligned_cols=133 Identities=12% Similarity=0.121 Sum_probs=70.5
Q ss_pred CCCcHH--HHHHHHh---CCEEEE--EeCCHHHHHH---HHHHHHHcCCCCcEEE-EEccccccC-----CCCCccEEEE
Q psy15742 198 CGCGGN--TIQFAAV---CQKVIS--IDIDPAKLRL---AQHNASVYGVSHKIQF-IQGDFFALA-----PSLQGDVVFL 261 (342)
Q Consensus 198 cGtG~~--~~~~a~~---~~~v~g--vD~s~~~l~~---a~~n~~~~gl~~~i~~-~~~D~~~~~-----~~~~~D~Ii~ 261 (342)
+|-|.+ +..+++. +.++++ .|...+..+. +..|++...-. .+.+ ..-|+.++. ....||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~-g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL-GVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc-CCccccCCCCCcccccccccCCcCCEEEE
Confidence 455555 4455554 345554 4544444433 33566544211 2333 344666653 3458999999
Q ss_pred cCCCCCCccccccccc---cccCcCCCCchhhhHhhhccCCCceeec------C-CCCCHHHHHHhhCCCcEEEEecccC
Q psy15742 262 SPPWGGPEYARSSFSI---DNIFPEQGGGRRLFQVARGISPNVGYYL------P-RTSDVFEIFHDSGKKGSFISLTGRQ 331 (342)
Q Consensus 262 nPP~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~-~~~~~~~l~~~~~~~~~i~~i~~~~ 331 (342)
|=|..|.........+ +.++.. .+..+...+.+++.+.+ | ..+.+..++.. .++.+....+++
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~-----Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~--~gl~l~~~~~F~ 154 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRG-----FFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAE--AGLVLVRKVPFD 154 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHH-----HHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHh--cCCEEEEEecCC
Confidence 9998873221112222 223332 33344444555444444 3 44555555544 678888888888
Q ss_pred --CCCCCCc
Q psy15742 332 --MFSPSQD 338 (342)
Q Consensus 332 --~fp~t~h 338 (342)
.||.-.|
T Consensus 155 ~~~ypgY~~ 163 (166)
T PF10354_consen 155 PSDYPGYEH 163 (166)
T ss_pred HHHCCCccc
Confidence 4887655
No 303
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.52 E-value=1.5 Score=33.96 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=43.4
Q ss_pred cCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEEcCC
Q psy15742 197 FCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPP 264 (342)
Q Consensus 197 gcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~nPP 264 (342)
=||.|.++..+++. +..|+.+|.+++.++.++.. .+.++.+|..+.. .-.++|.+++.-+
T Consensus 3 I~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 3 IIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEccC
Confidence 37888999888774 45899999999998777643 2579999998753 2237888887544
No 304
>KOG0822|consensus
Probab=87.48 E-value=1.2 Score=44.01 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=52.9
Q ss_pred CeEEeccCCCcHHHHHHHH---h---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC-CCccEEEEc
Q psy15742 191 DVVIDGFCGCGGNTIQFAA---V---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-LQGDVVFLS 262 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~---~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~-~~~D~Ii~n 262 (342)
.+|+-+|+|-|-+.-...+ . -.++++||.+|.++-..+. ....+-+++++++.+|+..+.+. .+.|++++.
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE 446 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADIIVSE 446 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCchhhccchHHH
Confidence 3678999999987655433 2 4678999999999866554 33334456999999999999864 678888874
No 305
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=86.97 E-value=1.9 Score=38.84 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=34.8
Q ss_pred CeEEeccCCCcHHHHHHHHh----------CCEEEEEeCCHHHHHHHHHHHHH
Q psy15742 191 DVVIDGFCGCGGNTIQFAAV----------CQKVISIDIDPAKLRLAQHNASV 233 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~~----------~~~v~gvD~s~~~l~~a~~n~~~ 233 (342)
-+|+|+|+|+|.++..+.+. ..+++-||.|+.+.+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 58999999999999888764 24799999999998888888765
No 306
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=86.42 E-value=1 Score=39.53 Aligned_cols=55 Identities=22% Similarity=0.149 Sum_probs=40.6
Q ss_pred CeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEEEc
Q psy15742 191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLS 262 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii~n 262 (342)
-++||+||=+..+.+... .-..|+.||+++. .-.+.+.|+++.+ +.++||+|.+.
T Consensus 53 lrlLEVGals~~N~~s~~-~~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~S 111 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS-GWFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLS 111 (219)
T ss_pred ceEEeecccCCCCccccc-CceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEE
Confidence 589999999777655432 2356999999861 3457788998875 34689999885
No 307
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=86.35 E-value=1.9 Score=35.49 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=34.5
Q ss_pred eccCCCc--HHHHHHH--Hh--CCEEEEEeCCHHHHHHHHHH--HHHcCCCCcEEEEEccc
Q psy15742 195 DGFCGCG--GNTIQFA--AV--CQKVISIDIDPAKLRLAQHN--ASVYGVSHKIQFIQGDF 247 (342)
Q Consensus 195 DlgcGtG--~~~~~~a--~~--~~~v~gvD~s~~~l~~a~~n--~~~~gl~~~i~~~~~D~ 247 (342)
|+|++.| .....+. .. +.+|+++|.++..++..+.| +..+...+.+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 6666554 22 67899999999999999999 77665433466665444
No 308
>KOG2798|consensus
Probab=85.89 E-value=2.3 Score=39.48 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=34.2
Q ss_pred CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHH
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 228 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~ 228 (342)
.-+||-+|||.|.++..+|..|..+-|-|.|--|+-...
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~ 189 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSS 189 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHH
Confidence 458999999999999999999999999999988875443
No 309
>KOG1201|consensus
Probab=84.26 E-value=4.9 Score=37.07 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=57.1
Q ss_pred CCCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 189 ASDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 189 ~~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
.|..||=-|.|.|. ++.++|+.+..+...|++....+...+.++..| ++....+|+.+.. +-+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 37788888888875 677788888899999999999998888888776 6888888987652 235
Q ss_pred CccEEEEc
Q psy15742 255 QGDVVFLS 262 (342)
Q Consensus 255 ~~D~Ii~n 262 (342)
..|++|-|
T Consensus 114 ~V~ILVNN 121 (300)
T KOG1201|consen 114 DVDILVNN 121 (300)
T ss_pred CceEEEec
Confidence 78888877
No 310
>KOG3350|consensus
Probab=84.06 E-value=7.3 Score=33.12 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=45.3
Q ss_pred HHhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----CCC
Q psy15742 184 ASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----SLQ 255 (342)
Q Consensus 184 ~~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----~~~ 255 (342)
......+.+|--+.|-|=.+-...-.. ..+|+-.+.+. +...+| -+|+.-|...... ...
T Consensus 68 v~~s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDk--------RFe~yg----~eFvfYDyN~p~dlp~~lk~~ 135 (217)
T KOG3350|consen 68 VEASGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDK--------RFELYG----TEFVFYDYNCPLDLPDELKAH 135 (217)
T ss_pred HhhcccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehh--------hHHhcc----ceeEEeccCCCCCCHHHHHhc
Confidence 333445667777777664411111111 35788888875 344455 3577777765431 247
Q ss_pred ccEEEEcCCCCCCcc
Q psy15742 256 GDVVFLSPPWGGPEY 270 (342)
Q Consensus 256 ~D~Ii~nPP~~~~~~ 270 (342)
||+|++||||-....
T Consensus 136 fdiivaDPPfL~~eC 150 (217)
T KOG3350|consen 136 FDIIVADPPFLSEEC 150 (217)
T ss_pred ccEEEeCCccccchh
Confidence 999999999987654
No 311
>KOG3201|consensus
Probab=83.87 E-value=1.1 Score=37.59 Aligned_cols=72 Identities=11% Similarity=0.023 Sum_probs=46.5
Q ss_pred CCeEEeccCC-CcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEEcccccc---CCCCCccEEEE
Q psy15742 190 SDVVIDGFCG-CGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS--HKIQFIQGDFFAL---APSLQGDVVFL 261 (342)
Q Consensus 190 ~~~vLDlgcG-tG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~--~~i~~~~~D~~~~---~~~~~~D~Ii~ 261 (342)
|.+|+++|.| +|..++.+|.. ...|.-.|-++.+++..++-...|-.+ ..+....-+.... .....||+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 6789999999 55556666655 578999999999998888776555221 1222222222111 12348999997
No 312
>PRK06194 hypothetical protein; Provisional
Probab=83.74 E-value=7.2 Score=35.33 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=50.8
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+.++| +..|+|+++..+++ .|.+|+.+|.+...++.....+...+. ++.++.+|+.+.. ..+
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA--EVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45676 55566777666654 488999999998777666555544343 6788999987642 113
Q ss_pred CccEEEEcCCCCC
Q psy15742 255 QGDVVFLSPPWGG 267 (342)
Q Consensus 255 ~~D~Ii~nPP~~~ 267 (342)
..|+|+.+.-...
T Consensus 83 ~id~vi~~Ag~~~ 95 (287)
T PRK06194 83 AVHLLFNNAGVGA 95 (287)
T ss_pred CCCEEEECCCCCC
Confidence 5799999876543
No 313
>PTZ00357 methyltransferase; Provisional
Probab=83.60 E-value=2.8 Score=42.93 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=48.9
Q ss_pred eEEeccCCCcHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHH---HHcC-----CCCcEEEEEccccccCCC----
Q psy15742 192 VVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNA---SVYG-----VSHKIQFIQGDFFALAPS---- 253 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a~~------~~~v~gvD~s~~~l~~a~~n~---~~~g-----l~~~i~~~~~D~~~~~~~---- 253 (342)
.|+-+|+|-|-+.-...+. ..+|++||.++.++.....+. .... ..+.++++..|+..+...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999986555432 358999999977655554443 2221 124699999999998522
Q ss_pred --------CCccEEEEc
Q psy15742 254 --------LQGDVVFLS 262 (342)
Q Consensus 254 --------~~~D~Ii~n 262 (342)
+++|+||+.
T Consensus 783 s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSE 799 (1072)
T ss_pred cccccccccccceehHh
Confidence 268888873
No 314
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=83.53 E-value=1.1 Score=40.29 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=31.0
Q ss_pred HHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCC
Q psy15742 183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDID 220 (342)
Q Consensus 183 i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s 220 (342)
+......+..+.|+++|||..+..+-+.|..|++-|+-
T Consensus 21 ~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle 58 (330)
T COG3392 21 VKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLE 58 (330)
T ss_pred HhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHH
Confidence 33444567789999999999999999889888888863
No 315
>KOG0024|consensus
Probab=83.42 E-value=2.3 Score=39.58 Aligned_cols=43 Identities=26% Similarity=0.196 Sum_probs=37.1
Q ss_pred cCCCCeEEeccCC-CcHHHHHHHHh--CCEEEEEeCCHHHHHHHHH
Q psy15742 187 CKASDVVIDGFCG-CGGNTIQFAAV--CQKVISIDIDPAKLRLAQH 229 (342)
Q Consensus 187 ~~~~~~vLDlgcG-tG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~ 229 (342)
++.|.+||=+|+| .|..+...|+. +.+|+.+|+++..++.|++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 4579999999999 47777777775 6899999999999999998
No 316
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=83.41 E-value=0.64 Score=36.05 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=13.4
Q ss_pred CccEEEEcCCCCCCc
Q psy15742 255 QGDVVFLSPPWGGPE 269 (342)
Q Consensus 255 ~~D~Ii~nPP~~~~~ 269 (342)
+||+|+.||||....
T Consensus 2 kFD~VIGNPPY~~~~ 16 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIK 16 (106)
T ss_pred CcCEEEECCCChhhc
Confidence 599999999999865
No 317
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=82.80 E-value=9.8 Score=33.77 Aligned_cols=74 Identities=18% Similarity=0.053 Sum_probs=52.7
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.| |+|.++..+++ .|.+|+.++.++..++.....++..|. ++.++.+|+.+.. ..+
T Consensus 10 ~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 10 GRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL--SAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc--eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 56777666 56777777665 488999999998887776666665443 5788889987642 123
Q ss_pred CccEEEEcCCCC
Q psy15742 255 QGDVVFLSPPWG 266 (342)
Q Consensus 255 ~~D~Ii~nPP~~ 266 (342)
..|.+|.+....
T Consensus 87 ~~d~li~~ag~~ 98 (255)
T PRK07523 87 PIDILVNNAGMQ 98 (255)
T ss_pred CCCEEEECCCCC
Confidence 689999887544
No 318
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=82.72 E-value=7.8 Score=34.49 Aligned_cols=73 Identities=16% Similarity=0.128 Sum_probs=52.6
Q ss_pred CCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+.++|=.| |+|.++..+++. |.+|+.++.+...++.....+...+. ++.++.+|+.+.. ..+
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI--DALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 55677666 677777777653 88999999999888777766654443 6788999987642 113
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|.|+.+...
T Consensus 89 ~id~vi~~ag~ 99 (259)
T PRK08213 89 HVDILVNNAGA 99 (259)
T ss_pred CCCEEEECCCC
Confidence 68999998664
No 319
>KOG1596|consensus
Probab=82.23 E-value=2.2 Score=38.04 Aligned_cols=75 Identities=17% Similarity=0.017 Sum_probs=53.1
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVV 259 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~I 259 (342)
+++|.+||=+|+++|+..-+...- ..-|++||.|+..=+..-.-+++ - .|+-.+..|+.... .-.-.|+|
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-R--tNiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-R--TNIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-c--CCceeeeccCCCchheeeeeeeEEEE
Confidence 578999999999999988888775 35699999987654332222211 1 36777888887643 12368999
Q ss_pred EEcCC
Q psy15742 260 FLSPP 264 (342)
Q Consensus 260 i~nPP 264 (342)
|+|-|
T Consensus 231 FaDva 235 (317)
T KOG1596|consen 231 FADVA 235 (317)
T ss_pred eccCC
Confidence 99866
No 320
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=82.09 E-value=11 Score=33.13 Aligned_cols=75 Identities=17% Similarity=-0.017 Sum_probs=51.2
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+.++|=.| |+|.++..+++ .|.+|++++.++..+..+...+...+. ++.++.+|+.+.. .-+
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG--KARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 55677544 56776666654 488999999998777666666654442 5888999987642 013
Q ss_pred CccEEEEcCCCCC
Q psy15742 255 QGDVVFLSPPWGG 267 (342)
Q Consensus 255 ~~D~Ii~nPP~~~ 267 (342)
.+|.|+.++....
T Consensus 83 ~~d~vi~~ag~~~ 95 (251)
T PRK12826 83 RLDILVANAGIFP 95 (251)
T ss_pred CCCEEEECCCCCC
Confidence 6899999875543
No 321
>PRK05854 short chain dehydrogenase; Provisional
Probab=81.99 E-value=11 Score=34.84 Aligned_cols=75 Identities=15% Similarity=-0.017 Sum_probs=50.5
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+++++=.|+ +|+++..+++ .|.+|+.+..+.+..+.+...+....-..++.++.+|+.+.. ..+
T Consensus 14 gk~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 556665555 5566666554 489999999998877776666654322236889999987642 124
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|++|.|.-.
T Consensus 93 ~iD~li~nAG~ 103 (313)
T PRK05854 93 PIHLLINNAGV 103 (313)
T ss_pred CccEEEECCcc
Confidence 68999988643
No 322
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=81.69 E-value=3.4 Score=37.68 Aligned_cols=85 Identities=12% Similarity=0.168 Sum_probs=44.0
Q ss_pred cEEEEEccccccCC-CCCccEEEEcCCCCCCccccc--cccccccCcCCCCchhhhHhhhccCCCc-eeecCCCCCHHHH
Q psy15742 239 KIQFIQGDFFALAP-SLQGDVVFLSPPWGGPEYARS--SFSIDNIFPEQGGGRRLFQVARGISPNV-GYYLPRTSDVFEI 314 (342)
Q Consensus 239 ~i~~~~~D~~~~~~-~~~~D~Ii~nPP~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~l 314 (342)
++++.++|+.+... ...-|+|++||||........ ...-..+... +...+.++...+.... ...++.+ ....+
T Consensus 155 ~v~i~~~Df~~~i~~~~~~dfvYlDPPY~~~~~~~~f~~y~~~~f~~~--dh~~L~~~l~~l~~~~~~~~lS~~-~~~~i 231 (266)
T TIGR00571 155 NTTFLCGSFEKILAMVDDDSFVYCDPPYLPLSATYNFTGYHTNGFDED--EQKRLANFCKSLDERGIKFLLSNS-DSSFT 231 (266)
T ss_pred CCEEEECCHHHHHhhcCCCCEEEECCCCCCCCCCCCccCccCCCCCHH--HHHHHHHHHHHHHhCCCEEEEEeC-CCHHH
Confidence 67899999988753 234579999999964321110 0100111111 2345566666554333 3343333 33334
Q ss_pred HHhhCCCcEEEEe
Q psy15742 315 FHDSGKKGSFISL 327 (342)
Q Consensus 315 ~~~~~~~~~i~~i 327 (342)
.++. .++.+..+
T Consensus 232 ~ely-~~~~~~~~ 243 (266)
T TIGR00571 232 RELY-QGFNVKVV 243 (266)
T ss_pred HHHh-cCCeEEEE
Confidence 4443 56666544
No 323
>PRK05867 short chain dehydrogenase; Provisional
Probab=81.56 E-value=9.8 Score=33.77 Aligned_cols=74 Identities=11% Similarity=-0.078 Sum_probs=51.4
Q ss_pred CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.|++ |+++..++ +.|.+|+.++.+++.++.....+...+ .++.++.+|+.+.. ..+
T Consensus 9 ~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 9 GKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5677777764 44455544 448999999999988877776666554 36788888987642 114
Q ss_pred CccEEEEcCCCC
Q psy15742 255 QGDVVFLSPPWG 266 (342)
Q Consensus 255 ~~D~Ii~nPP~~ 266 (342)
..|.+|.|.-..
T Consensus 86 ~id~lv~~ag~~ 97 (253)
T PRK05867 86 GIDIAVCNAGII 97 (253)
T ss_pred CCCEEEECCCCC
Confidence 789999987543
No 324
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=81.46 E-value=15 Score=34.82 Aligned_cols=45 Identities=9% Similarity=-0.007 Sum_probs=36.5
Q ss_pred CCeEEeccCCCcHHHHHHHHh----------CCEEEEEeCCHHHHHHHHHHHHHc
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV----------CQKVISIDIDPAKLRLAQHNASVY 234 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~----------~~~v~gvD~s~~~l~~a~~n~~~~ 234 (342)
.-.++++|.|+|.++.-+.+. ..++.-||.|++..+.=+++++..
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 457999999999998777542 468999999999888877777644
No 325
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=81.07 E-value=3.4 Score=38.99 Aligned_cols=71 Identities=23% Similarity=0.224 Sum_probs=48.5
Q ss_pred hcCCCCeEEeccCC-CcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc---ccccCCCCCccEEE
Q psy15742 186 RCKASDVVIDGFCG-CGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD---FFALAPSLQGDVVF 260 (342)
Q Consensus 186 ~~~~~~~vLDlgcG-tG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D---~~~~~~~~~~D~Ii 260 (342)
.+++|++|+=.|+| .|..++.+|+. +.+|+++|.+++-.+.|++- |- -.++.+. ..+.... .+|+|+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~~~-~~d~ii 234 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAVKE-IADAII 234 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHhHh-hCcEEE
Confidence 35678888877776 56688888885 99999999999999888764 32 2333322 2222222 399988
Q ss_pred EcCC
Q psy15742 261 LSPP 264 (342)
Q Consensus 261 ~nPP 264 (342)
.--|
T Consensus 235 ~tv~ 238 (339)
T COG1064 235 DTVG 238 (339)
T ss_pred ECCC
Confidence 7655
No 326
>KOG1331|consensus
Probab=80.56 E-value=0.85 Score=41.60 Aligned_cols=71 Identities=18% Similarity=0.067 Sum_probs=50.3
Q ss_pred CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCCC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGG 267 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~~ 267 (342)
.+..++|.|||.|-....- -...++|.|++...+..|++. | ......+|+.+.+ .+..||.+++---.++
T Consensus 45 ~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~~p~~~~s~d~~lsiavihh 115 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALKLPFREESFDAALSIAVIHH 115 (293)
T ss_pred CcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC----C---CceeehhhhhcCCCCCCccccchhhhhhhh
Confidence 4778999999999643211 245799999999988887753 1 2267889999887 4458898876544444
Q ss_pred C
Q psy15742 268 P 268 (342)
Q Consensus 268 ~ 268 (342)
.
T Consensus 116 l 116 (293)
T KOG1331|consen 116 L 116 (293)
T ss_pred h
Confidence 3
No 327
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=80.38 E-value=2 Score=44.45 Aligned_cols=43 Identities=14% Similarity=0.340 Sum_probs=38.4
Q ss_pred CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS 232 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~ 232 (342)
+..++|+++|-|++.+++++.|..|+++|++|.+.-..+.-+.
T Consensus 91 ~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavlE 133 (875)
T COG1743 91 GPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVLE 133 (875)
T ss_pred CCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHHh
Confidence 5689999999999999999999999999999999877766553
No 328
>PRK07063 short chain dehydrogenase; Provisional
Probab=79.88 E-value=13 Score=32.97 Aligned_cols=74 Identities=16% Similarity=0.022 Sum_probs=50.5
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.|++ |+++..+++ .|.+|+.++.++..++.....+...+...++.++.+|+.+.. ..+
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5677766654 555555544 489999999999888777766654222236888999987642 124
Q ss_pred CccEEEEcCC
Q psy15742 255 QGDVVFLSPP 264 (342)
Q Consensus 255 ~~D~Ii~nPP 264 (342)
..|.+|.|.-
T Consensus 86 ~id~li~~ag 95 (260)
T PRK07063 86 PLDVLVNNAG 95 (260)
T ss_pred CCcEEEECCC
Confidence 6899998754
No 329
>PRK06949 short chain dehydrogenase; Provisional
Probab=79.78 E-value=15 Score=32.56 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=50.7
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+++++=.| |+|.++..+++ .|.+|++++.+++.++.....+...+ .++.++.+|+.+.. ..+
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 56677666 66666666654 37899999999988877766665443 36788888886532 123
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|+++.+...
T Consensus 86 ~~d~li~~ag~ 96 (258)
T PRK06949 86 TIDILVNNSGV 96 (258)
T ss_pred CCCEEEECCCC
Confidence 68999987654
No 330
>PRK06172 short chain dehydrogenase; Provisional
Probab=79.68 E-value=14 Score=32.66 Aligned_cols=73 Identities=19% Similarity=0.006 Sum_probs=50.8
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+++++=.|+ +|+++..+++ .|.+|+.++.++..++.+...+...+ .++.++.+|+.+.. ..+
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 557777775 5555555544 48899999999988777666665544 36888999987642 113
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
+.|+|+.+.-+
T Consensus 84 ~id~li~~ag~ 94 (253)
T PRK06172 84 RLDYAFNNAGI 94 (253)
T ss_pred CCCEEEECCCC
Confidence 67999988654
No 331
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=79.48 E-value=16 Score=32.41 Aligned_cols=74 Identities=14% Similarity=0.003 Sum_probs=51.3
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+++++=.| |+|.++..+++ .|.+|+.++.+++.++.....++..+. ++.++.+|+.+.. .-+
T Consensus 11 ~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 11 GQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG--AAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 66777666 45665665544 489999999998887776666665543 6788999987642 113
Q ss_pred CccEEEEcCCCC
Q psy15742 255 QGDVVFLSPPWG 266 (342)
Q Consensus 255 ~~D~Ii~nPP~~ 266 (342)
+.|.++.+.-..
T Consensus 88 ~id~vi~~ag~~ 99 (256)
T PRK06124 88 RLDILVNNVGAR 99 (256)
T ss_pred CCCEEEECCCCC
Confidence 679999886543
No 332
>PRK07454 short chain dehydrogenase; Provisional
Probab=79.33 E-value=17 Score=31.77 Aligned_cols=73 Identities=11% Similarity=-0.098 Sum_probs=49.6
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------CC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------SL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~~ 254 (342)
+++++=.| |+|.++..+++ .|.+|+.++.++...+.....+...+ .++.++.+|+.+... .+
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45666666 46776666654 48899999999877665555554333 368889999876421 13
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|.+|.+.-.
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 58999987654
No 333
>PRK05876 short chain dehydrogenase; Provisional
Probab=79.24 E-value=15 Score=33.36 Aligned_cols=74 Identities=18% Similarity=0.065 Sum_probs=50.4
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.|+ +|+++..+++ .|.+|+.++.++..++.+.+.+...+. ++.++.+|+.+.. ..+
T Consensus 6 ~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 6 GRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 556775555 5556656554 488999999998887766665554443 6788899987642 113
Q ss_pred CccEEEEcCCCC
Q psy15742 255 QGDVVFLSPPWG 266 (342)
Q Consensus 255 ~~D~Ii~nPP~~ 266 (342)
..|++|.|.-..
T Consensus 83 ~id~li~nAg~~ 94 (275)
T PRK05876 83 HVDVVFSNAGIV 94 (275)
T ss_pred CCCEEEECCCcC
Confidence 689999987643
No 334
>PRK12939 short chain dehydrogenase; Provisional
Probab=78.94 E-value=11 Score=33.02 Aligned_cols=72 Identities=17% Similarity=-0.005 Sum_probs=50.0
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------CC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------SL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~~ 254 (342)
+.+++ +..|+|.++..+++ .|.+|++++.+++.+......++..+ .++.++.+|+.+... -+
T Consensus 7 ~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 7 GKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45666 55567777777765 38899999999887776666554433 368899999876421 14
Q ss_pred CccEEEEcCC
Q psy15742 255 QGDVVFLSPP 264 (342)
Q Consensus 255 ~~D~Ii~nPP 264 (342)
..|.|+.+.-
T Consensus 84 ~id~vi~~ag 93 (250)
T PRK12939 84 GLDGLVNNAG 93 (250)
T ss_pred CCCEEEECCC
Confidence 6899988653
No 335
>PRK07890 short chain dehydrogenase; Provisional
Probab=78.80 E-value=13 Score=32.89 Aligned_cols=72 Identities=13% Similarity=-0.002 Sum_probs=49.4
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+++++=.| |+|.++..+++ .|.+|+.++.++...+.....+...+ .++.++..|+.+.. .-+
T Consensus 5 ~k~vlItG-a~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 5 GKVVVVSG-VGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 55677444 56666666554 48999999999987766666555444 36888999987542 114
Q ss_pred CccEEEEcCC
Q psy15742 255 QGDVVFLSPP 264 (342)
Q Consensus 255 ~~D~Ii~nPP 264 (342)
..|.|+.+.-
T Consensus 82 ~~d~vi~~ag 91 (258)
T PRK07890 82 RVDALVNNAF 91 (258)
T ss_pred CccEEEECCc
Confidence 6899998863
No 336
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.66 E-value=13 Score=32.66 Aligned_cols=73 Identities=15% Similarity=0.052 Sum_probs=49.9
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+.++|=.|+ +|.++..+++ .|.+|+.++.++..++.+.+.+...+ .++.++..|+.+.. ..+
T Consensus 5 ~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 5 DKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 567776664 5666666554 47899999999887776666665444 36788889976531 013
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|.||.+...
T Consensus 82 ~id~vi~~ag~ 92 (253)
T PRK08217 82 QLNGLINNAGI 92 (253)
T ss_pred CCCEEEECCCc
Confidence 68999988653
No 337
>PRK06197 short chain dehydrogenase; Provisional
Probab=78.37 E-value=17 Score=33.48 Aligned_cols=75 Identities=15% Similarity=0.014 Sum_probs=50.1
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+++++=.| |+|+++..+++ .|.+|+.++.+++..+.+.+.+....-..++.++.+|+.+.. ..+
T Consensus 16 ~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 94 (306)
T PRK06197 16 GRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP 94 (306)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence 55676544 56777766665 488999999998877666655543211236888999987642 123
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|++|.|.-.
T Consensus 95 ~iD~li~nAg~ 105 (306)
T PRK06197 95 RIDLLINNAGV 105 (306)
T ss_pred CCCEEEECCcc
Confidence 68999988643
No 338
>PRK08339 short chain dehydrogenase; Provisional
Probab=78.30 E-value=17 Score=32.57 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=48.3
Q ss_pred CCeEEeccCCCcHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----------CCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----------PSLQ 255 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~----a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----------~~~~ 255 (342)
++++|=.|++ |+++..+ ++.|.+|+.++.++..++.+.+.+.... ..++.++.+|+.+.. ..+.
T Consensus 8 ~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 8 GKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 5566665554 4445444 4458999999999888877766654321 136888899987642 1146
Q ss_pred ccEEEEcCC
Q psy15742 256 GDVVFLSPP 264 (342)
Q Consensus 256 ~D~Ii~nPP 264 (342)
.|+++.|.-
T Consensus 86 iD~lv~nag 94 (263)
T PRK08339 86 PDIFFFSTG 94 (263)
T ss_pred CcEEEECCC
Confidence 899888753
No 339
>KOG1562|consensus
Probab=78.29 E-value=3 Score=38.34 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=60.9
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc--CCC-CcEEEEEccccccC---CCCCccE
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY--GVS-HKIQFIQGDFFALA---PSLQGDV 258 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~--gl~-~~i~~~~~D~~~~~---~~~~~D~ 258 (342)
+...+.++-+|-|.|++....+++ ..++.-+|++...++..+.-+... |.+ +++.+.-||...+. ..++||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 445679999999999999888876 467889999999999888877543 333 47999999988775 4568999
Q ss_pred EEEc
Q psy15742 259 VFLS 262 (342)
Q Consensus 259 Ii~n 262 (342)
|+.|
T Consensus 199 ii~d 202 (337)
T KOG1562|consen 199 IITD 202 (337)
T ss_pred EEEe
Confidence 9975
No 340
>PRK07576 short chain dehydrogenase; Provisional
Probab=78.24 E-value=17 Score=32.59 Aligned_cols=72 Identities=17% Similarity=0.033 Sum_probs=48.2
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.| |+|+++..+++ .|.+|++++.++..++.....+...+ .++.++.+|+.+.. ..+
T Consensus 9 ~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 9 GKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 55676666 56666665554 48899999999887766555554433 25678888887532 113
Q ss_pred CccEEEEcCC
Q psy15742 255 QGDVVFLSPP 264 (342)
Q Consensus 255 ~~D~Ii~nPP 264 (342)
..|++|.+..
T Consensus 86 ~iD~vi~~ag 95 (264)
T PRK07576 86 PIDVLVSGAA 95 (264)
T ss_pred CCCEEEECCC
Confidence 6799998763
No 341
>PRK09291 short chain dehydrogenase; Provisional
Probab=78.22 E-value=15 Score=32.47 Aligned_cols=72 Identities=13% Similarity=0.038 Sum_probs=48.1
Q ss_pred CeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEE
Q psy15742 191 DVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL 261 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~ 261 (342)
.++|=.|+ +|+++..+++ .|.+|++++.++.............+. ++.++.+|+.+.. .....|++|.
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 35665555 5666665544 488999999988776666555554443 5888889987642 1237899998
Q ss_pred cCCC
Q psy15742 262 SPPW 265 (342)
Q Consensus 262 nPP~ 265 (342)
|.-+
T Consensus 80 ~ag~ 83 (257)
T PRK09291 80 NAGI 83 (257)
T ss_pred CCCc
Confidence 7543
No 342
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.19 E-value=18 Score=31.57 Aligned_cols=73 Identities=12% Similarity=0.022 Sum_probs=50.5
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+.+++=.| |+|.++..+++ .|.+|+.++.++...+.....+...+ .++.++.+|+.+.. ..+
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 44666666 57777777654 48899999999887766555555443 36888899987642 113
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|.||.+...
T Consensus 84 ~id~vi~~ag~ 94 (239)
T PRK07666 84 SIDILINNAGI 94 (239)
T ss_pred CccEEEEcCcc
Confidence 68999988654
No 343
>PRK07814 short chain dehydrogenase; Provisional
Probab=77.98 E-value=14 Score=33.12 Aligned_cols=72 Identities=13% Similarity=0.055 Sum_probs=49.8
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------CC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------SL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~~ 254 (342)
++++|=.| |+|+++..+++ .|.+|++++.+++.++.....+...+ .++.++.+|+.+... -+
T Consensus 10 ~~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 10 DQVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 55676666 56667666654 48899999999887766666554433 367888899876431 13
Q ss_pred CccEEEEcCC
Q psy15742 255 QGDVVFLSPP 264 (342)
Q Consensus 255 ~~D~Ii~nPP 264 (342)
..|+||.+.-
T Consensus 87 ~id~vi~~Ag 96 (263)
T PRK07814 87 RLDIVVNNVG 96 (263)
T ss_pred CCCEEEECCC
Confidence 6899998754
No 344
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=77.65 E-value=3.6 Score=35.46 Aligned_cols=55 Identities=33% Similarity=0.404 Sum_probs=42.6
Q ss_pred CCeEEeccCCCcHHHHHHHHh----C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV----C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~----~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~ 250 (342)
+..|++.|.-.|+.++.+|.. | .+|+++|+|-..++-+... . +++.|++++..+.
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~dp 130 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSSTDP 130 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCCCH
Confidence 458999999999999999874 5 7899999987765443332 2 4788999887764
No 345
>PRK06139 short chain dehydrogenase; Provisional
Probab=77.53 E-value=17 Score=34.20 Aligned_cols=73 Identities=14% Similarity=0.039 Sum_probs=51.5
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.|+ +|+++..+++ .|.+|+.++.+++.++.....++..|. ++.++..|+.+.. ..+
T Consensus 7 ~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 7 GAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA--EVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 456665555 5555555544 589999999999998888777776664 6778888887532 124
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|++|.|.-.
T Consensus 84 ~iD~lVnnAG~ 94 (330)
T PRK06139 84 RIDVWVNNVGV 94 (330)
T ss_pred CCCEEEECCCc
Confidence 78999998654
No 346
>PRK07102 short chain dehydrogenase; Provisional
Probab=77.24 E-value=15 Score=32.23 Aligned_cols=72 Identities=11% Similarity=0.026 Sum_probs=48.6
Q ss_pred eEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--------CCCccEE
Q psy15742 192 VVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--------SLQGDVV 259 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--------~~~~D~I 259 (342)
+++=.| |+|+++..+++ .|.+|++++.+++..+....++...+- .++.++.+|+.+... ...+|.+
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGA-VAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 466444 56777776655 488999999998877655555544322 378899999886531 1257999
Q ss_pred EEcCCC
Q psy15742 260 FLSPPW 265 (342)
Q Consensus 260 i~nPP~ 265 (342)
+.+...
T Consensus 81 v~~ag~ 86 (243)
T PRK07102 81 LIAVGT 86 (243)
T ss_pred EECCcC
Confidence 987654
No 347
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=76.82 E-value=5.5 Score=37.48 Aligned_cols=45 Identities=33% Similarity=0.407 Sum_probs=36.5
Q ss_pred hcCCCCeEEeccCC-CcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHH
Q psy15742 186 RCKASDVVIDGFCG-CGGNTIQFAAV--CQKVISIDIDPAKLRLAQHN 230 (342)
Q Consensus 186 ~~~~~~~vLDlgcG-tG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n 230 (342)
+.++|.+|.=+||| .|..++.-|+. +.+++++|+++..+++|++-
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 45678899999997 56667776765 68999999999999998863
No 348
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=76.79 E-value=19 Score=32.16 Aligned_cols=75 Identities=9% Similarity=-0.036 Sum_probs=51.6
Q ss_pred CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742 190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ 255 (342)
Q Consensus 190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~ 255 (342)
+++++=.|++.|. ++..++..|.+|+.++.++..++.+..+++..+. ++.++.+|+.+.. .-+.
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI--EAHGYVCDVTDEDGVQAMVSQIEKEVGV 87 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 5567777766443 2333444589999999999888777777765543 6888999987642 1146
Q ss_pred ccEEEEcCCCC
Q psy15742 256 GDVVFLSPPWG 266 (342)
Q Consensus 256 ~D~Ii~nPP~~ 266 (342)
.|.++.+.-..
T Consensus 88 id~li~~ag~~ 98 (265)
T PRK07097 88 IDILVNNAGII 98 (265)
T ss_pred CCEEEECCCCC
Confidence 89999887654
No 349
>PRK08862 short chain dehydrogenase; Provisional
Probab=76.56 E-value=17 Score=31.95 Aligned_cols=72 Identities=18% Similarity=0.091 Sum_probs=50.6
Q ss_pred CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC-
Q psy15742 190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL- 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~- 254 (342)
+++++=.|++.|. ++..+++.|.+|+.++.++..++.+.+.+...+. ++..+..|..+.. .-+
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTD--NVYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--CeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 5678877777765 4445556699999999999988877766665553 5666777766532 113
Q ss_pred CccEEEEcC
Q psy15742 255 QGDVVFLSP 263 (342)
Q Consensus 255 ~~D~Ii~nP 263 (342)
..|+++.|.
T Consensus 83 ~iD~li~na 91 (227)
T PRK08862 83 APDVLVNNW 91 (227)
T ss_pred CCCEEEECC
Confidence 789999986
No 350
>PRK05866 short chain dehydrogenase; Provisional
Probab=76.40 E-value=21 Score=32.77 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=50.1
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+.+++=.|+ +|+++..+++ .|.+|+.++.+++.++.....+...+. ++.++.+|+.+.. ..+
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~--~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG--DAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456766665 5566666554 489999999999888776666654443 5778899987642 123
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|+++.+.-.
T Consensus 117 ~id~li~~AG~ 127 (293)
T PRK05866 117 GVDILINNAGR 127 (293)
T ss_pred CCCEEEECCCC
Confidence 68999988643
No 351
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.36 E-value=9.1 Score=30.14 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=43.6
Q ss_pred CeEEeccCCCcH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccEEEE-cCC
Q psy15742 191 DVVIDGFCGCGG-NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFL-SPP 264 (342)
Q Consensus 191 ~~vLDlgcGtG~-~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~Ii~-nPP 264 (342)
++|+++|.|-=. .+-.+++.|..++++|+++. ++. ..++++..|+++..-. ...|+|.+ -||
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~-----~g~~~v~DDitnP~~~iY~~A~lIYSiRpp 80 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP-----EGLRFVVDDITNPNISIYEGADLIYSIRPP 80 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc-----ccceEEEccCCCccHHHhhCccceeecCCC
Confidence 389999888544 45556667999999999986 222 2578999999876321 25788875 344
No 352
>PRK07062 short chain dehydrogenase; Provisional
Probab=76.21 E-value=20 Score=31.93 Aligned_cols=75 Identities=12% Similarity=-0.042 Sum_probs=49.7
Q ss_pred CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+++++=.|++ |+++..++ +.|.+|+.++.+++.++.+.+.+....-..++.++.+|+.+.. ..+
T Consensus 8 ~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 8 GRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 5567766654 45555554 4488999999999888776666554321126778888887642 124
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|.++.|.-.
T Consensus 87 ~id~li~~Ag~ 97 (265)
T PRK07062 87 GVDMLVNNAGQ 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68999988644
No 353
>PRK08703 short chain dehydrogenase; Provisional
Probab=75.99 E-value=17 Score=31.77 Aligned_cols=73 Identities=15% Similarity=0.019 Sum_probs=47.3
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--------------
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------------- 251 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-------------- 251 (342)
+++++=.|| +|+++..+++ .|.+|+.++.++..++.....+...+- ..+.++..|+.+..
T Consensus 6 ~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 6 DKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeecccchHHHHHHHHHHHHH
Confidence 567887774 6666666554 488999999999877766666554432 24556667764321
Q ss_pred CCCCccEEEEcCC
Q psy15742 252 PSLQGDVVFLSPP 264 (342)
Q Consensus 252 ~~~~~D~Ii~nPP 264 (342)
..+..|.|+.+.-
T Consensus 84 ~~~~id~vi~~ag 96 (239)
T PRK08703 84 TQGKLDGIVHCAG 96 (239)
T ss_pred hCCCCCEEEEecc
Confidence 0146799987754
No 354
>PRK08251 short chain dehydrogenase; Provisional
Probab=75.26 E-value=23 Score=31.06 Aligned_cols=75 Identities=9% Similarity=-0.090 Sum_probs=50.6
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.| |+|+++..+++ .+.+|+.++.++..++.....+....-..++.++.+|+.+.. ..+
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34566555 57777777665 378999999999887766665544321236888999987642 123
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|.++.+.-.
T Consensus 81 ~id~vi~~ag~ 91 (248)
T PRK08251 81 GLDRVIVNAGI 91 (248)
T ss_pred CCCEEEECCCc
Confidence 68999988643
No 355
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=74.86 E-value=21 Score=31.42 Aligned_cols=73 Identities=15% Similarity=0.040 Sum_probs=48.7
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-------------C
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------------P 252 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-------------~ 252 (342)
+++++=.| |+|.++..+++ .|.+|++++.++...+.....+...+. .++.++.+|+.... .
T Consensus 12 ~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (247)
T PRK08945 12 DRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTIEEQ 89 (247)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHHHHH
Confidence 56677666 56777766654 378999999998877666666655443 35677777774211 1
Q ss_pred CCCccEEEEcCC
Q psy15742 253 SLQGDVVFLSPP 264 (342)
Q Consensus 253 ~~~~D~Ii~nPP 264 (342)
.++.|.||.+-.
T Consensus 90 ~~~id~vi~~Ag 101 (247)
T PRK08945 90 FGRLDGVLHNAG 101 (247)
T ss_pred hCCCCEEEECCc
Confidence 136899998753
No 356
>PRK07478 short chain dehydrogenase; Provisional
Probab=74.83 E-value=24 Score=31.20 Aligned_cols=73 Identities=19% Similarity=0.017 Sum_probs=50.3
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=. .|+|+++..+++ .|.+|+.++.++..++.+...++..+. ++.++.+|+.+.. ..+
T Consensus 6 ~k~~lIt-Gas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 6 GKVAIIT-GASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG--EAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCEEEEe-CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 4566644 445666555554 488999999999888777766665553 6788889987642 123
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|.+|.|...
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 68999988654
No 357
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=74.82 E-value=2.1 Score=39.18 Aligned_cols=50 Identities=30% Similarity=0.382 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHH
Q psy15742 176 PEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRL 226 (342)
Q Consensus 176 ~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~ 226 (342)
-..++..|.+.++.+.+.+|++||.|.+.+..+.. .+++.-|+++..+..
T Consensus 12 K~~l~~~i~~~lP~~~~y~EPF~GggaV~i~~~~~-~~~i~~Din~~Lvn~ 61 (274)
T COG0338 12 KSKLLDQIIPHLPEGVSYIEPFVGGGAVFINLAAK-KKYILNDINPDLVNL 61 (274)
T ss_pred hHHHHHHHHHhCCCCceeeCCccCcceeeeehhhh-hhhhHhcCCHHHHHH
Confidence 35677888888887679999999999999888765 678889999998743
No 358
>PRK07904 short chain dehydrogenase; Provisional
Probab=74.66 E-value=16 Score=32.67 Aligned_cols=75 Identities=9% Similarity=0.001 Sum_probs=49.7
Q ss_pred CCCeEEeccCCCcHHHHHHHH----h-CCEEEEEeCCHHH-HHHHHHHHHHcCCCCcEEEEEccccccC----------C
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAA----V-CQKVISIDIDPAK-LRLAQHNASVYGVSHKIQFIQGDFFALA----------P 252 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~----~-~~~v~gvD~s~~~-l~~a~~n~~~~gl~~~i~~~~~D~~~~~----------~ 252 (342)
.+.++|=.|+ +|+++..+++ . +.+|+.++.++.. ++.+.+.+...+. .+++++.+|+.+.. .
T Consensus 7 ~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 7 NPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHh
Confidence 4667777776 5566666654 3 4799999988764 6655555655442 26889999986532 1
Q ss_pred CCCccEEEEcCCC
Q psy15742 253 SLQGDVVFLSPPW 265 (342)
Q Consensus 253 ~~~~D~Ii~nPP~ 265 (342)
.+..|+++.+...
T Consensus 85 ~g~id~li~~ag~ 97 (253)
T PRK07904 85 GGDVDVAIVAFGL 97 (253)
T ss_pred cCCCCEEEEeeec
Confidence 2468988887544
No 359
>PRK07035 short chain dehydrogenase; Provisional
Probab=74.56 E-value=26 Score=30.87 Aligned_cols=73 Identities=10% Similarity=-0.030 Sum_probs=48.5
Q ss_pred CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.|++ |.++..++ +.|.+|+.++.++..++...+.+...+. ++.++..|+.+.. .-+
T Consensus 8 ~k~vlItGas-~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 8 GKIALVTGAS-RGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGG--KAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4566666655 45555544 4488999999998877766666654443 5778888886542 113
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
+.|+++.+..+
T Consensus 85 ~id~li~~ag~ 95 (252)
T PRK07035 85 RLDILVNNAAA 95 (252)
T ss_pred CCCEEEECCCc
Confidence 68999987654
No 360
>PRK07109 short chain dehydrogenase; Provisional
Probab=74.42 E-value=23 Score=33.26 Aligned_cols=73 Identities=14% Similarity=-0.046 Sum_probs=51.3
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+.+++=.| |+|+++..+++ .|.+|+.++.++..++...+.+...|. ++.++.+|+.+.. .-+
T Consensus 8 ~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~--~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 8 RQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG--EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 44555555 55666666544 488999999999888877777766554 6888999987642 124
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|++|.|.-.
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 68999988653
No 361
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=74.15 E-value=9.4 Score=37.32 Aligned_cols=67 Identities=15% Similarity=0.031 Sum_probs=45.9
Q ss_pred CCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEE
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVF 260 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii 260 (342)
..+++=+|+ |.++..+++. +..|+.+|.+++.++.++... ..+.++.+|..+.. .-..+|.|+
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~vi 302 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADAFI 302 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCEEE
Confidence 456665555 6666666553 789999999999887766542 14678899986542 223688888
Q ss_pred EcCC
Q psy15742 261 LSPP 264 (342)
Q Consensus 261 ~nPP 264 (342)
+-.|
T Consensus 303 ~~~~ 306 (453)
T PRK09496 303 ALTN 306 (453)
T ss_pred ECCC
Confidence 7655
No 362
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=73.83 E-value=7.2 Score=37.36 Aligned_cols=44 Identities=32% Similarity=0.382 Sum_probs=36.8
Q ss_pred cCCCCeEEeccCCC-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHH
Q psy15742 187 CKASDVVIDGFCGC-GGNTIQFAAV-CQ-KVISIDIDPAKLRLAQHN 230 (342)
Q Consensus 187 ~~~~~~vLDlgcGt-G~~~~~~a~~-~~-~v~gvD~s~~~l~~a~~n 230 (342)
+.++.+||..|||. |..++.+|+. +. .++++|.+++..+.+++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 45788999999987 8888888887 64 699999999998888764
No 363
>PRK08589 short chain dehydrogenase; Validated
Probab=73.72 E-value=24 Score=31.76 Aligned_cols=73 Identities=16% Similarity=0.053 Sum_probs=46.7
Q ss_pred CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.|+ +|+++..++ +.|.+|+.++.+ ..++.....+...+ .++.++.+|+.+.. ..+
T Consensus 6 ~k~vlItGa-s~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 6 NKVAVITGA-STGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 556665555 445555544 458999999998 55554444454443 26788888987642 124
Q ss_pred CccEEEEcCCCC
Q psy15742 255 QGDVVFLSPPWG 266 (342)
Q Consensus 255 ~~D~Ii~nPP~~ 266 (342)
..|++|.|.-+.
T Consensus 82 ~id~li~~Ag~~ 93 (272)
T PRK08589 82 RVDVLFNNAGVD 93 (272)
T ss_pred CcCEEEECCCCC
Confidence 689999987543
No 364
>PRK07774 short chain dehydrogenase; Provisional
Probab=73.09 E-value=22 Score=31.18 Aligned_cols=74 Identities=16% Similarity=0.035 Sum_probs=49.4
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------CC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------SL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~~ 254 (342)
+++++=.| |+|.++..+++ .|.+|+.++.++.........+...+ .++.++..|+.+... .+
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 45666555 66777777765 48899999999876655555544332 256788888876531 13
Q ss_pred CccEEEEcCCCC
Q psy15742 255 QGDVVFLSPPWG 266 (342)
Q Consensus 255 ~~D~Ii~nPP~~ 266 (342)
..|+||.+-.+.
T Consensus 83 ~id~vi~~ag~~ 94 (250)
T PRK07774 83 GIDYLVNNAAIY 94 (250)
T ss_pred CCCEEEECCCCc
Confidence 689999876653
No 365
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=73.09 E-value=12 Score=36.09 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=35.9
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASV 233 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~ 233 (342)
++++++||-|.+|-....-.++....+|++||+||..+...+-++..
T Consensus 33 i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred CCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHHH
Confidence 45688999987765555545555579999999999999888776653
No 366
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=72.71 E-value=20 Score=31.51 Aligned_cols=73 Identities=15% Similarity=0.044 Sum_probs=51.6
Q ss_pred CCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++| +..|+|.++..+++. |.+|++++.++...+.....+...+. ++.++.+|+.+.. ..+
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG--KAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34555 555678888887764 88999999999887776666655443 6888999987542 113
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|+||.+-..
T Consensus 81 ~~d~vi~~a~~ 91 (258)
T PRK12429 81 GVDILVNNAGI 91 (258)
T ss_pred CCCEEEECCCC
Confidence 68999987643
No 367
>PRK06125 short chain dehydrogenase; Provisional
Probab=72.69 E-value=29 Score=30.75 Aligned_cols=74 Identities=11% Similarity=-0.074 Sum_probs=49.6
Q ss_pred CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-------CCCCccE
Q psy15742 190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDV 258 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-------~~~~~D~ 258 (342)
+++++=.|+ +|+++..++ +.|.+|++++.+++..+.+...+....- .++.++.+|+.+.. ..+..|.
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHG-VDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcC-CceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 556766665 555655554 4488999999998877776666654321 36788888886532 1247899
Q ss_pred EEEcCCC
Q psy15742 259 VFLSPPW 265 (342)
Q Consensus 259 Ii~nPP~ 265 (342)
+|.++-.
T Consensus 85 lv~~ag~ 91 (259)
T PRK06125 85 LVNNAGA 91 (259)
T ss_pred EEECCCC
Confidence 9988643
No 368
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=72.43 E-value=17 Score=36.89 Aligned_cols=74 Identities=9% Similarity=0.004 Sum_probs=48.7
Q ss_pred CCCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCC-------CCcEEEEEccccccC----CC
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGV-------SHKIQFIQGDFFALA----PS 253 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl-------~~~i~~~~~D~~~~~----~~ 253 (342)
.|.+|| +..|+|.++..+++ .|.+|++++.+...++.....+...++ ..++.++.+|+.+.. .-
T Consensus 79 ~gKvVL-VTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAF-VAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 455555 45556777777654 488999999998877655544433211 135889999998753 12
Q ss_pred CCccEEEEcC
Q psy15742 254 LQGDVVFLSP 263 (342)
Q Consensus 254 ~~~D~Ii~nP 263 (342)
+..|+||.+-
T Consensus 158 ggiDiVVn~A 167 (576)
T PLN03209 158 GNASVVICCI 167 (576)
T ss_pred cCCCEEEEcc
Confidence 3689999874
No 369
>PRK06720 hypothetical protein; Provisional
Probab=72.02 E-value=38 Score=28.41 Aligned_cols=74 Identities=22% Similarity=0.176 Sum_probs=47.4
Q ss_pred CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742 190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ 255 (342)
Q Consensus 190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~ 255 (342)
+..++-.|.+.|. ++..+++.|.+|+.+|.++..++.+...+...+. ...++..|..+.. .-+.
T Consensus 16 gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~v~~~~~~~G~ 93 (169)
T PRK06720 16 GKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGG--EALFVSYDMEKQGDWQRVISITLNAFSR 93 (169)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5566666665433 2333444589999999998877666555554442 5677888876532 1246
Q ss_pred ccEEEEcCCC
Q psy15742 256 GDVVFLSPPW 265 (342)
Q Consensus 256 ~D~Ii~nPP~ 265 (342)
.|.++.|.-.
T Consensus 94 iDilVnnAG~ 103 (169)
T PRK06720 94 IDMLFQNAGL 103 (169)
T ss_pred CCEEEECCCc
Confidence 8999988543
No 370
>KOG2352|consensus
Probab=71.78 E-value=1.9 Score=42.34 Aligned_cols=73 Identities=15% Similarity=0.164 Sum_probs=52.3
Q ss_pred CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--------CCCCccE
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--------PSLQGDV 258 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--------~~~~~D~ 258 (342)
.+..++-+|-|.|.+...+... ...+++|+++|.+++.|+.+.....- .+..+.-.|..+.. .+..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 4567888899999988777554 47899999999999999998843322 13444445554432 2348999
Q ss_pred EEEc
Q psy15742 259 VFLS 262 (342)
Q Consensus 259 Ii~n 262 (342)
++.|
T Consensus 374 l~~d 377 (482)
T KOG2352|consen 374 LMVD 377 (482)
T ss_pred EEEE
Confidence 9986
No 371
>PRK09242 tropinone reductase; Provisional
Probab=71.65 E-value=34 Score=30.29 Aligned_cols=75 Identities=9% Similarity=-0.025 Sum_probs=50.4
Q ss_pred CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.|++ |+++..++ +.|.+|+.++.+++.++....++....-..++.++.+|+.+.. .-+
T Consensus 9 ~k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5677777664 44444444 3488999999998888777666654421236888899987632 124
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|.++.+.-.
T Consensus 88 ~id~li~~ag~ 98 (257)
T PRK09242 88 GLHILVNNAGG 98 (257)
T ss_pred CCCEEEECCCC
Confidence 68999988754
No 372
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=71.65 E-value=31 Score=30.99 Aligned_cols=73 Identities=14% Similarity=0.000 Sum_probs=48.4
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+++++=.|+ +|+++..+++ .|.+|+.++.++...+...+.+...+. ++.++.+|+.+.. .-+
T Consensus 10 ~k~vlVtGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 10 GKVAVITGG-GGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGG--EALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 455665554 4555555544 488999999998777666665554442 6788899987642 114
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|++|.+...
T Consensus 87 ~id~li~~ag~ 97 (278)
T PRK08277 87 PCDILINGAGG 97 (278)
T ss_pred CCCEEEECCCC
Confidence 68999988653
No 373
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=71.61 E-value=6.8 Score=35.70 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCC-CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHH
Q psy15742 177 EKVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLA 227 (342)
Q Consensus 177 e~~~~~i~~~~~~-~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a 227 (342)
..++..|...++. ..+.+|++||.|++.+.+.. ..++.-|+++..+..-
T Consensus 12 ~~l~~~i~~~~p~~~~~yvEPF~Gggsv~l~~~~--~~~~lND~n~~Li~~~ 61 (266)
T TIGR00571 12 TSLLPEIKKHLPKNFNCLVEPFVGGGAVFFNLNP--KRYLLNDINEDLINLY 61 (266)
T ss_pred HHHHHHHHHhcCcccCEEEEecCCcchhheeecC--cEEEEecCCHHHHHHH
Confidence 4566667777765 46899999999999886643 4578889999887543
No 374
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=71.53 E-value=8.2 Score=38.66 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=34.5
Q ss_pred CCCeEEeccCCC-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q psy15742 189 ASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQH 229 (342)
Q Consensus 189 ~~~~vLDlgcGt-G~~~~~~a~~-~~~v~gvD~s~~~l~~a~~ 229 (342)
++.+|+=+|||. |..++..|+. |..|+++|.+++.++.++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 578999999995 5567777776 8899999999999988776
No 375
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=71.01 E-value=22 Score=31.42 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=50.6
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------CC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------SL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~~ 254 (342)
+.++| +..|+|.++..+++ .|.+|+.++.++...+.+.+.+...+ .++.++.+|+.+... .+
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45666 55666777666654 48899999999987777666665444 367889999876421 13
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|++|.+.-.
T Consensus 84 ~~d~vi~~ag~ 94 (262)
T PRK13394 84 SVDILVSNAGI 94 (262)
T ss_pred CCCEEEECCcc
Confidence 58999887654
No 376
>PRK07326 short chain dehydrogenase; Provisional
Probab=70.95 E-value=21 Score=31.00 Aligned_cols=70 Identities=19% Similarity=0.034 Sum_probs=48.2
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------C-----CC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------P-----SL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~-----~~ 254 (342)
+.+++=.| |+|.++..+++ .|.+|++++.++.........+... .++.++.+|+.+.. . .+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45677666 57777777664 3789999999988776665555432 36888899987542 0 13
Q ss_pred CccEEEEcC
Q psy15742 255 QGDVVFLSP 263 (342)
Q Consensus 255 ~~D~Ii~nP 263 (342)
.+|.||.+.
T Consensus 82 ~~d~vi~~a 90 (237)
T PRK07326 82 GLDVLIANA 90 (237)
T ss_pred CCCEEEECC
Confidence 689988765
No 377
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=69.93 E-value=9.7 Score=39.06 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=43.7
Q ss_pred CCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEEcCC
Q psy15742 198 CGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPP 264 (342)
Q Consensus 198 cGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~nPP 264 (342)
||-|.++..+++. +..++.+|.|++.++.+++ .| ...+.||+.+.. .-.+.|.+++--+
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG----YKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 7777777777653 7899999999999988764 23 568999988752 2237888887544
No 378
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=69.77 E-value=47 Score=29.01 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=50.7
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+.++|=.| |+|.++..+++ .|.+|+.++.++.....+...+...+ .++.++.+|+.+.. ..+
T Consensus 3 ~~~ilItG-as~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 3 DKTAIVTG-GGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 44566555 45666666654 47899999999887777666665443 36888999987542 013
Q ss_pred CccEEEEcCCCC
Q psy15742 255 QGDVVFLSPPWG 266 (342)
Q Consensus 255 ~~D~Ii~nPP~~ 266 (342)
..|++|.+..+.
T Consensus 80 ~~d~vi~~ag~~ 91 (250)
T TIGR03206 80 PVDVLVNNAGWD 91 (250)
T ss_pred CCCEEEECCCCC
Confidence 579999888654
No 379
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=69.63 E-value=37 Score=29.95 Aligned_cols=73 Identities=15% Similarity=0.039 Sum_probs=49.8
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.| |+|+++..+++ .|.+|+.++.++..++.....+...+. ++.++.+|+.+.. ..+
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI--KAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC--eEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 55666655 55666666654 488999999998877776666654442 5778888887642 124
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
.+|.++.+.-.
T Consensus 86 ~id~vi~~ag~ 96 (254)
T PRK08085 86 PIDVLINNAGI 96 (254)
T ss_pred CCCEEEECCCc
Confidence 68999998754
No 380
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=69.60 E-value=25 Score=29.88 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=61.8
Q ss_pred EEeccCCCcH--HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc-------C-CC--------CcEEEEEccccccCCCC
Q psy15742 193 VIDGFCGCGG--NTIQFAAVCQKVISIDIDPAKLRLAQHNASVY-------G-VS--------HKIQFIQGDFFALAPSL 254 (342)
Q Consensus 193 vLDlgcGtG~--~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~-------g-l~--------~~i~~~~~D~~~~~~~~ 254 (342)
|-=+|+|+=+ ++..+|..|.+|+-+|.+++.++.+++.++.. | +. +++. ...|+.+..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~--- 77 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV--- 77 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC---
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh---
Confidence 3345665433 33444556999999999999998888877641 1 11 2343 344555442
Q ss_pred CccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec-CCCCCHHHHHHhhCCCcEEEEecccC
Q psy15742 255 QGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL-PRTSDVFEIFHDSGKKGSFISLTGRQ 331 (342)
Q Consensus 255 ~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~l~~~~~~~~~i~~i~~~~ 331 (342)
..|+|+=.-| .... ++ . ..+.++....+++.++.. .++....+++..+...-+++-+.++.
T Consensus 78 ~adlViEai~----E~l~----~K---~-----~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~ 139 (180)
T PF02737_consen 78 DADLVIEAIP----EDLE----LK---Q-----ELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFN 139 (180)
T ss_dssp TESEEEE-S-----SSHH----HH---H-----HHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-S
T ss_pred hhheehhhcc----ccHH----HH---H-----HHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEeccc
Confidence 5899997666 2211 00 0 022223333444444443 45556777777766666666555553
No 381
>PRK08303 short chain dehydrogenase; Provisional
Probab=69.59 E-value=28 Score=32.18 Aligned_cols=71 Identities=11% Similarity=0.004 Sum_probs=45.2
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCH----------HHHHHHHHHHHHcCCCCcEEEEEccccccC----
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDP----------AKLRLAQHNASVYGVSHKIQFIQGDFFALA---- 251 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~----------~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---- 251 (342)
+++++-.|++.| ++..+++ .|.+|+.++.+. +.++.+.+.+...+ .++.++.+|+.+..
T Consensus 8 ~k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 8 GKVALVAGATRG-AGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG--GRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC--CceEEEEcCCCCHHHHHH
Confidence 567777775544 5555544 488999988763 33444444444444 25778889987642
Q ss_pred -------CCCCccEEEEcC
Q psy15742 252 -------PSLQGDVVFLSP 263 (342)
Q Consensus 252 -------~~~~~D~Ii~nP 263 (342)
..+..|++|.|.
T Consensus 85 ~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHcCCccEEEECC
Confidence 124689999987
No 382
>PRK06940 short chain dehydrogenase; Provisional
Probab=69.50 E-value=24 Score=31.95 Aligned_cols=70 Identities=17% Similarity=0.047 Sum_probs=47.9
Q ss_pred eEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----------CCCCccE
Q psy15742 192 VVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----------PSLQGDV 258 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----------~~~~~D~ 258 (342)
.++=-|+ |+++..+++. |.+|+.+|.++..++.+.+.+...+. ++.++.+|+.+.. ..+..|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF--DVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4444453 5677777664 88999999998877666655554443 6788888987642 1246899
Q ss_pred EEEcCCC
Q psy15742 259 VFLSPPW 265 (342)
Q Consensus 259 Ii~nPP~ 265 (342)
+|.|.-.
T Consensus 80 li~nAG~ 86 (275)
T PRK06940 80 LVHTAGV 86 (275)
T ss_pred EEECCCc
Confidence 9988754
No 383
>PRK07791 short chain dehydrogenase; Provisional
Probab=69.26 E-value=32 Score=31.36 Aligned_cols=73 Identities=19% Similarity=0.031 Sum_probs=46.6
Q ss_pred CCeEEeccCCCcHHHHHH----HHhCCEEEEEeCCH---------HHHHHHHHHHHHcCCCCcEEEEEccccccC-----
Q psy15742 190 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDP---------AKLRLAQHNASVYGVSHKIQFIQGDFFALA----- 251 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~----a~~~~~v~gvD~s~---------~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----- 251 (342)
++++|=.|++.| ++..+ ++.|.+|+.++.+. ..++.+.+.+...+. ++.++.+|+.+..
T Consensus 6 ~k~~lITGas~G-IG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 6 GRVVIVTGAGGG-IGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG--EAVANGDDIADWDGAANL 82 (286)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC--ceEEEeCCCCCHHHHHHH
Confidence 567777776554 44444 44588999888764 555555555544443 6778888987632
Q ss_pred ------CCCCccEEEEcCCC
Q psy15742 252 ------PSLQGDVVFLSPPW 265 (342)
Q Consensus 252 ------~~~~~D~Ii~nPP~ 265 (342)
..+..|.+|.|.-.
T Consensus 83 ~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHhcCCCCEEEECCCC
Confidence 12578999988654
No 384
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=69.22 E-value=38 Score=29.98 Aligned_cols=75 Identities=11% Similarity=-0.105 Sum_probs=47.6
Q ss_pred CeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742 191 DVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ 255 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~ 255 (342)
+++|=.| |+|.++..++ +.|.+|+.+|.+....+.....+....-..++.++.+|+.+.. ..+.
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4566666 4566655554 4488999999998776655544432211125788899987642 1146
Q ss_pred ccEEEEcCCCC
Q psy15742 256 GDVVFLSPPWG 266 (342)
Q Consensus 256 ~D~Ii~nPP~~ 266 (342)
.|.|+.+.-..
T Consensus 82 id~vv~~ag~~ 92 (259)
T PRK12384 82 VDLLVYNAGIA 92 (259)
T ss_pred CCEEEECCCcC
Confidence 79999886443
No 385
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=68.87 E-value=40 Score=29.83 Aligned_cols=74 Identities=15% Similarity=0.070 Sum_probs=50.0
Q ss_pred CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.|++ |.++..++ +.|.+++.++.+...++.....++..+. ++.++.+|+.+.. .-+
T Consensus 11 ~k~vlVtG~s-~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 11 GKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5678877754 55555544 3488999999988877666555554443 6778889987642 113
Q ss_pred CccEEEEcCCCC
Q psy15742 255 QGDVVFLSPPWG 266 (342)
Q Consensus 255 ~~D~Ii~nPP~~ 266 (342)
..|.++.+....
T Consensus 88 ~~d~li~~ag~~ 99 (255)
T PRK06113 88 KVDILVNNAGGG 99 (255)
T ss_pred CCCEEEECCCCC
Confidence 689999887643
No 386
>PRK10904 DNA adenine methylase; Provisional
Probab=68.52 E-value=11 Score=34.33 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=23.0
Q ss_pred cEEEEEccccccCC-CCCccEEEEcCCCCC
Q psy15742 239 KIQFIQGDFFALAP-SLQGDVVFLSPPWGG 267 (342)
Q Consensus 239 ~i~~~~~D~~~~~~-~~~~D~Ii~nPP~~~ 267 (342)
++++.+.|+.+... ...-|+|++||||..
T Consensus 157 ~v~i~~~Df~~~i~~~~~~~fvYlDPPY~~ 186 (271)
T PRK10904 157 NAFFYCESYADSMARADKGSVVYCDPPYAP 186 (271)
T ss_pred CCEEEECCHHHHHhhcCCCcEEEECCCCCC
Confidence 67899999988753 235689999999964
No 387
>PRK06196 oxidoreductase; Provisional
Probab=68.45 E-value=31 Score=31.89 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=47.2
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+++++=.| |+|+++..+++ .|.+|++++.++...+.+...+. .+.++.+|+.+.. ..+
T Consensus 26 ~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 26 GKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID------GVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 55676656 56777776665 48899999999877655544332 3678888987642 124
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|++|.|...
T Consensus 99 ~iD~li~nAg~ 109 (315)
T PRK06196 99 RIDILINNAGV 109 (315)
T ss_pred CCCEEEECCCC
Confidence 68999998754
No 388
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=68.24 E-value=26 Score=36.37 Aligned_cols=73 Identities=25% Similarity=0.230 Sum_probs=45.6
Q ss_pred CeEEeccCCCcHHHHHHHHh--------------CCEEEEEeCCH---HHHHHHH-----------HHHHH-----cCC-
Q psy15742 191 DVVIDGFCGCGGNTIQFAAV--------------CQKVISIDIDP---AKLRLAQ-----------HNASV-----YGV- 236 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~~--------------~~~v~gvD~s~---~~l~~a~-----------~n~~~-----~gl- 236 (342)
-+|+|+|=|+|.+.+.+.+. -.+++++|..| +.+..+. .-... .|+
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 58999999999987766531 13789999754 3332222 11111 122
Q ss_pred -----CC--cEEEEEccccccCCC--CCccEEEEcC
Q psy15742 237 -----SH--KIQFIQGDFFALAPS--LQGDVVFLSP 263 (342)
Q Consensus 237 -----~~--~i~~~~~D~~~~~~~--~~~D~Ii~nP 263 (342)
.+ .+++..+|+.+..+. ..+|+++.|+
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~ 174 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG 174 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC
Confidence 11 345677898876542 4699999995
No 389
>PRK06914 short chain dehydrogenase; Provisional
Probab=68.14 E-value=32 Score=30.93 Aligned_cols=76 Identities=14% Similarity=0.055 Sum_probs=50.1
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----------SLQ 255 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----------~~~ 255 (342)
+.++|=.| |+|.++..+++ .|.+|++++.++...+.........+...++.++.+|+.+... -+.
T Consensus 3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 34555555 45555555543 4899999999987776665555544444478899999876421 136
Q ss_pred ccEEEEcCCCC
Q psy15742 256 GDVVFLSPPWG 266 (342)
Q Consensus 256 ~D~Ii~nPP~~ 266 (342)
.|.|+.++-..
T Consensus 82 id~vv~~ag~~ 92 (280)
T PRK06914 82 IDLLVNNAGYA 92 (280)
T ss_pred eeEEEECCccc
Confidence 79999886543
No 390
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=68.00 E-value=34 Score=30.37 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=46.7
Q ss_pred eEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCCc
Q psy15742 192 VVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQG 256 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~~ 256 (342)
++|=.|+ +|+++..++ +.|.+|+.++.++..++.+.+.+...+ ++.++.+|+.+.. ..+..
T Consensus 2 ~vlItGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 2 NVLVTAS-SRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred eEEEEcC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 3455554 455555554 458999999999988877766665432 5778889986532 12468
Q ss_pred cEEEEcCCC
Q psy15742 257 DVVFLSPPW 265 (342)
Q Consensus 257 D~Ii~nPP~ 265 (342)
|++|.|.-.
T Consensus 78 d~li~naG~ 86 (259)
T PRK08340 78 DALVWNAGN 86 (259)
T ss_pred CEEEECCCC
Confidence 999988643
No 391
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=67.83 E-value=11 Score=38.16 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=42.9
Q ss_pred CCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEEcCC
Q psy15742 198 CGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPP 264 (342)
Q Consensus 198 cGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~nPP 264 (342)
||.|.++..+++. +..++.+|.|++.++.+++ . ....+.+|+.+.. .-.++|.+++.-+
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~----g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R----GIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C----CCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 6777777777663 7899999999998888764 1 3678999998752 2237887776433
No 392
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=67.55 E-value=9.3 Score=33.75 Aligned_cols=42 Identities=33% Similarity=0.299 Sum_probs=33.2
Q ss_pred CCCCeEEeccCCC-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q psy15742 188 KASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQH 229 (342)
Q Consensus 188 ~~~~~vLDlgcGt-G~~~~~~a~~-~~~v~gvD~s~~~l~~a~~ 229 (342)
.++.+||-.|+|+ |...+.+++. |.+|++++.++...+.++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 5688999999885 6666667765 8899999999887777643
No 393
>KOG2356|consensus
Probab=67.52 E-value=2.7 Score=38.47 Aligned_cols=50 Identities=28% Similarity=0.393 Sum_probs=33.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEEcCCCCCCc
Q psy15742 211 CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPPWGGPE 269 (342)
Q Consensus 211 ~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~nPP~~~~~ 269 (342)
+.++.-+|-+... .+-++++-.|+.||+.+.. ....+|+||+||||..-+
T Consensus 144 ~qk~~~~dGs~g~---------kYyIPpkSsF~~gDv~~~~qll~~H~llpdlIIiDPPW~NKS 198 (366)
T KOG2356|consen 144 GQKPGIIDGSDGT---------KYYIPPKSSFHVGDVKDIEQLLRAHDLLPDLIIIDPPWFNKS 198 (366)
T ss_pred ccceeEeeCCCcc---------eEEeCCccceecccHHHHHHHhHHHhhcCCeEEeCCCCCCcc
Confidence 4555556654432 3345668899999987653 123569999999998654
No 394
>PRK05650 short chain dehydrogenase; Provisional
Probab=67.47 E-value=27 Score=31.30 Aligned_cols=71 Identities=11% Similarity=-0.094 Sum_probs=48.2
Q ss_pred eEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCCc
Q psy15742 192 VVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQG 256 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~~ 256 (342)
++|=.| |+|+++..+++ .|.+|+.++.+.+.++.+...+...+ .++.++.+|+.+.. ..+.+
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 355444 46666666554 48899999999888777666665544 36788899987642 11368
Q ss_pred cEEEEcCCC
Q psy15742 257 DVVFLSPPW 265 (342)
Q Consensus 257 D~Ii~nPP~ 265 (342)
|.+|.+...
T Consensus 79 d~lI~~ag~ 87 (270)
T PRK05650 79 DVIVNNAGV 87 (270)
T ss_pred CEEEECCCC
Confidence 999988654
No 395
>KOG1099|consensus
Probab=67.45 E-value=4.7 Score=35.76 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=46.3
Q ss_pred CCeEEeccCCCcHHHHHHHHh-C-------C---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-------
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV-C-------Q---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------- 251 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~-~-------~---~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------- 251 (342)
-.+++|+++..|+.+..+.+. . . .+++||+.+- ..+ +.+.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI-~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------API-EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------Ccc-CceEEeecccCCHhHHHHHHH
Confidence 458999999999999998874 1 1 3999998751 123 35778899987653
Q ss_pred --CCCCccEEEEcCC
Q psy15742 252 --PSLQGDVVFLSPP 264 (342)
Q Consensus 252 --~~~~~D~Ii~nPP 264 (342)
...+.|+|+||-.
T Consensus 110 hfggekAdlVvcDGA 124 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGA 124 (294)
T ss_pred HhCCCCccEEEeCCC
Confidence 2348999999843
No 396
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=67.18 E-value=23 Score=32.78 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=45.4
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----CCCccEEEE
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFL 261 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----~~~~D~Ii~ 261 (342)
++++|=.| |+|.++..+++ .|.+|+++..++.............+...+++++.+|+.+... -...|+||.
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 56676655 67887777765 3789988877765443332222222322468899999987531 124798887
Q ss_pred cCC
Q psy15742 262 SPP 264 (342)
Q Consensus 262 nPP 264 (342)
+-.
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 654
No 397
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=67.17 E-value=8.9 Score=29.05 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=35.3
Q ss_pred ccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742 196 GFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG 266 (342)
Q Consensus 196 lgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~ 266 (342)
+.||+|..+-.++ +..++-++.+|+ ++++...+..+.. ....+|+|++-|=..
T Consensus 4 ~~Cg~G~sTS~~~----------------~ki~~~~~~~~~--~~~v~~~~~~~~~~~~~~~Diil~~Pqv~ 57 (96)
T cd05564 4 LVCSAGMSTSILV----------------KKMKKAAEKRGI--DAEIEAVPESELEEYIDDADVVLLGPQVR 57 (96)
T ss_pred EEcCCCchHHHHH----------------HHHHHHHHHCCC--ceEEEEecHHHHHHhcCCCCEEEEChhHH
Confidence 5688887544333 344666677787 5788888877653 224799999977643
No 398
>KOG1098|consensus
Probab=66.96 E-value=6.5 Score=39.80 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=30.4
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCH
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDP 221 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~ 221 (342)
+.++..|||+||..|+...-+++. +.-|+|||+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 567889999999999999888875 67899999876
No 399
>PRK07677 short chain dehydrogenase; Provisional
Probab=66.92 E-value=33 Score=30.28 Aligned_cols=71 Identities=17% Similarity=0.039 Sum_probs=46.9
Q ss_pred CeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742 191 DVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ 255 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~ 255 (342)
+++|=.|+ +|+++..++ +.|.+|+.++.++..++.+...+...+ .++.++.+|+.+.. ..+.
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 35665555 444555444 448899999999887776666555443 36888999986532 1136
Q ss_pred ccEEEEcCC
Q psy15742 256 GDVVFLSPP 264 (342)
Q Consensus 256 ~D~Ii~nPP 264 (342)
.|.++.+..
T Consensus 79 id~lI~~ag 87 (252)
T PRK07677 79 IDALINNAA 87 (252)
T ss_pred ccEEEECCC
Confidence 899998753
No 400
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=66.60 E-value=36 Score=30.14 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=44.8
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|-.|+ +|+++..+++ .|.+|+.++.+.. +.+...++..+ .++.++.+|+.+.. ..+
T Consensus 8 ~k~~lItGa-s~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 8 GKVAIITGC-NTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 667786665 4555555554 4899998887542 22333333333 36888899987642 124
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
+.|+++.|.-.
T Consensus 83 ~iD~lv~~ag~ 93 (251)
T PRK12481 83 HIDILINNAGI 93 (251)
T ss_pred CCCEEEECCCc
Confidence 68999988654
No 401
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=66.50 E-value=19 Score=31.84 Aligned_cols=57 Identities=19% Similarity=0.161 Sum_probs=38.3
Q ss_pred CCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHH-HHHHcCCCCcEEEEEccccccC-----CCCCccEEEEc
Q psy15742 199 GCGGNTIQFAA----VCQKVISIDIDPAKLRLAQH-NASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLS 262 (342)
Q Consensus 199 GtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~-n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~n 262 (342)
|.|.++..+|+ .|..|+.+|.+++.++.... .. ....+++|..+.. .-..+|+++..
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~-------~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL-------DTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc-------ceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 44555555554 48999999999998776333 22 4678888887642 22368888874
No 402
>KOG0821|consensus
Probab=65.95 E-value=15 Score=32.40 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=55.3
Q ss_pred CCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--------------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--------------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--------------~~~ 254 (342)
...|+++|.|.|+++..+... ..+..-|++++..+.-.+.-.+... .+..+.++|++.+. ++.
T Consensus 51 ~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~ 128 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRFKIEKAFSESLKRPWEDDP 128 (326)
T ss_pred cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccceehHHhhcchhhcCCcccCC
Confidence 568999999999999998876 5678889999988877766555333 37888888887642 111
Q ss_pred CccEEEEcCCCCCC
Q psy15742 255 QGDVVFLSPPWGGP 268 (342)
Q Consensus 255 ~~D~Ii~nPP~~~~ 268 (342)
..=-|+-|-||...
T Consensus 129 p~~H~IGNLPf~i~ 142 (326)
T KOG0821|consen 129 PNVHIIGNLPFSVS 142 (326)
T ss_pred CceEEeccCCcccc
Confidence 22346778887544
No 403
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=65.59 E-value=6.4 Score=33.76 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=17.5
Q ss_pred HHHHHHhCCEEEEEeCCHHHHHHHH
Q psy15742 204 TIQFAAVCQKVISIDIDPAKLRLAQ 228 (342)
Q Consensus 204 ~~~~a~~~~~v~gvD~s~~~l~~a~ 228 (342)
+..+|+.|.+|+|+|++++.++..+
T Consensus 16 A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 16 AAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp HHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred HHHHHhCCCEEEEEeCChHHHHHHh
Confidence 4444556999999999999887655
No 404
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=65.56 E-value=9.8 Score=34.04 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=25.1
Q ss_pred eCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEEcCCCCCCccc
Q psy15742 218 DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPPWGGPEYA 271 (342)
Q Consensus 218 D~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~nPP~~~~~~~ 271 (342)
......+......+. ++++.+.|+.+... +.+-|+|.+||||...++.
T Consensus 144 ~~~~~~l~~~~~~l~------~~~i~~~d~~~~~~~~~~~~d~vYlDPPY~~~~~~ 193 (260)
T PF02086_consen 144 NRFLERLEKFSQRLQ------NVEIENRDFDEVIERYDSPNDFVYLDPPYYSTQYS 193 (260)
T ss_dssp ---HHHHHHHHHHHH------HEEEEEC-CHGGGTT--TTE-EEEE--S-TT----
T ss_pred hhhHHHHHHHHHHhC------CceeEehhHHHHHhhccCCCeEEEEcCccccccCc
Confidence 344555555555554 47889999887753 3468899999999884443
No 405
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.14 E-value=37 Score=30.26 Aligned_cols=73 Identities=10% Similarity=-0.094 Sum_probs=45.4
Q ss_pred CCeEEeccCCCc-HHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CC
Q psy15742 190 SDVVIDGFCGCG-GNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 253 (342)
Q Consensus 190 ~~~vLDlgcGtG-~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~ 253 (342)
++++|=.|+++| +++..+| +.|.+|+.++.+....+.+.+-.+..+ .+.++.+|+.+.. ..
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHHc
Confidence 678888888763 5555554 458899988988654333333222222 3456778876542 12
Q ss_pred CCccEEEEcCCC
Q psy15742 254 LQGDVVFLSPPW 265 (342)
Q Consensus 254 ~~~D~Ii~nPP~ 265 (342)
+..|+++.|.-+
T Consensus 87 g~ld~lv~nAg~ 98 (258)
T PRK07533 87 GRLDFLLHSIAF 98 (258)
T ss_pred CCCCEEEEcCcc
Confidence 478999988643
No 406
>PRK07024 short chain dehydrogenase; Provisional
Probab=64.92 E-value=36 Score=30.19 Aligned_cols=70 Identities=11% Similarity=-0.046 Sum_probs=45.8
Q ss_pred CeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742 191 DVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ 255 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~ 255 (342)
.+++=.|+ +|+++..+++ .|.+|+.++.+++.++...+.+... .++.++.+|+.+.. ..+.
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~ 78 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKA---ARVSVYAADVRDADALAAAAADFIAAHGL 78 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC---CeeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 35555554 6666666654 4889999999988776554443321 26888999987642 1235
Q ss_pred ccEEEEcCC
Q psy15742 256 GDVVFLSPP 264 (342)
Q Consensus 256 ~D~Ii~nPP 264 (342)
.|+++.|.-
T Consensus 79 id~lv~~ag 87 (257)
T PRK07024 79 PDVVIANAG 87 (257)
T ss_pred CCEEEECCC
Confidence 799998754
No 407
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=64.72 E-value=24 Score=32.10 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=40.9
Q ss_pred cCCCCeEEeccCCCcHHHHHHHHhC-------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q psy15742 187 CKASDVVIDGFCGCGGNTIQFAAVC-------QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250 (342)
Q Consensus 187 ~~~~~~vLDlgcGtG~~~~~~a~~~-------~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~ 250 (342)
+++...++|+|||.|.++.+++..- ..++.||...... .+-..++.......++=+..|+.++
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl 85 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDL 85 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeecc
Confidence 3556789999999999999998752 4788999865433 2222233222112456667777765
No 408
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=64.70 E-value=8.5 Score=30.20 Aligned_cols=31 Identities=42% Similarity=0.486 Sum_probs=27.1
Q ss_pred CCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q psy15742 199 GCGGNTIQFAAV-CQKVISIDIDPAKLRLAQH 229 (342)
Q Consensus 199 GtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~ 229 (342)
|.|..++.+|+. |.+|+++|.++..++.+++
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh
Confidence 468889999987 8999999999999888765
No 409
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=64.64 E-value=14 Score=35.14 Aligned_cols=43 Identities=28% Similarity=0.341 Sum_probs=35.1
Q ss_pred CCCeEEeccCCC-cHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHH
Q psy15742 189 ASDVVIDGFCGC-GGNTIQFAAV--CQKVISIDIDPAKLRLAQHNA 231 (342)
Q Consensus 189 ~~~~vLDlgcGt-G~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~ 231 (342)
++.+|+=+|||. |.+++.+++. +..|+.+|.++..++.|++-.
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence 445899999995 6677777776 588999999999999998743
No 410
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=64.49 E-value=13 Score=38.19 Aligned_cols=62 Identities=19% Similarity=0.299 Sum_probs=42.1
Q ss_pred CeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEE
Q psy15742 191 DVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL 261 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~ 261 (342)
.+|+=+ |-|.++..+++ .+..++.+|.|++.++.+++ .| ...+.+|..+.. .-.+.|.+++
T Consensus 401 ~~vII~--G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIA--GFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEE--ecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 345544 44555555544 37899999999999988865 23 568999988752 2236787776
Q ss_pred c
Q psy15742 262 S 262 (342)
Q Consensus 262 n 262 (342)
-
T Consensus 471 ~ 471 (621)
T PRK03562 471 A 471 (621)
T ss_pred E
Confidence 3
No 411
>PRK08643 acetoin reductase; Validated
Probab=64.42 E-value=42 Score=29.57 Aligned_cols=72 Identities=18% Similarity=0.031 Sum_probs=49.1
Q ss_pred CeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742 191 DVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ 255 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~ 255 (342)
+++|=.| |+|+++..+++ .|.+|+.++.++...+.....+...+ .++.++.+|+.+.. ..+.
T Consensus 3 k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 3555444 55666665554 48899999999888777766665544 26788899987642 1236
Q ss_pred ccEEEEcCCC
Q psy15742 256 GDVVFLSPPW 265 (342)
Q Consensus 256 ~D~Ii~nPP~ 265 (342)
.|.+|.+..+
T Consensus 80 id~vi~~ag~ 89 (256)
T PRK08643 80 LNVVVNNAGV 89 (256)
T ss_pred CCEEEECCCC
Confidence 8999988654
No 412
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=63.66 E-value=26 Score=32.19 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=43.9
Q ss_pred CCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----CCCccEEEE
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFL 261 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----~~~~D~Ii~ 261 (342)
+.+||=. .|+|.++.++++. |.+|++++.++.............+..++++++.+|+.+... -..+|.||.
T Consensus 4 ~~~ilVt-GatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVT-GASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEE-CChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 4566544 4578887777654 889999887754332222211111222478999999986431 125788876
Q ss_pred cCC
Q psy15742 262 SPP 264 (342)
Q Consensus 262 nPP 264 (342)
...
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 543
No 413
>PRK06181 short chain dehydrogenase; Provisional
Probab=63.45 E-value=40 Score=29.90 Aligned_cols=69 Identities=13% Similarity=0.054 Sum_probs=47.1
Q ss_pred eEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------CCCc
Q psy15742 192 VVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------SLQG 256 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~~~~ 256 (342)
++|=. .|+|.++..+++ .|.+|++++.++...+...+.+...+ .++.++.+|+.+... -+..
T Consensus 3 ~vlVt-Gasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 3 VVIIT-GASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred EEEEe-cCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 45544 456667666654 48899999999877776666655444 368888999876421 1368
Q ss_pred cEEEEcC
Q psy15742 257 DVVFLSP 263 (342)
Q Consensus 257 D~Ii~nP 263 (342)
|.|+.+.
T Consensus 80 d~vi~~a 86 (263)
T PRK06181 80 DILVNNA 86 (263)
T ss_pred CEEEECC
Confidence 9999875
No 414
>KOG0725|consensus
Probab=63.40 E-value=58 Score=29.67 Aligned_cols=78 Identities=15% Similarity=0.040 Sum_probs=58.5
Q ss_pred CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccC-----------C-C
Q psy15742 190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA-----------P-S 253 (342)
Q Consensus 190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~-----------~-~ 253 (342)
++.+|--|.++|. .+..+++.|.+|+..+.+++.++.+...+...+.. .++..+.+|..+.. . .
T Consensus 8 gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~~ 87 (270)
T KOG0725|consen 8 GKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKFF 87 (270)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHhC
Confidence 6677777776664 56677778999999999999998888877666552 46888999987542 1 4
Q ss_pred CCccEEEEcCCCCC
Q psy15742 254 LQGDVVFLSPPWGG 267 (342)
Q Consensus 254 ~~~D~Ii~nPP~~~ 267 (342)
++.|+++.|.--..
T Consensus 88 GkidiLvnnag~~~ 101 (270)
T KOG0725|consen 88 GKIDILVNNAGALG 101 (270)
T ss_pred CCCCEEEEcCCcCC
Confidence 68999998865443
No 415
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.61 E-value=38 Score=29.46 Aligned_cols=74 Identities=16% Similarity=0.064 Sum_probs=50.6
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEE-eCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------C
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISI-DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------S 253 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gv-D~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~ 253 (342)
++++|=.| |+|.++..+++ .|.+++.+ +.++...+.....+...+ .++.++.+|+.+... .
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG--GDAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 34555555 56777776654 37899988 988887776666655433 368899999876421 1
Q ss_pred CCccEEEEcCCCC
Q psy15742 254 LQGDVVFLSPPWG 266 (342)
Q Consensus 254 ~~~D~Ii~nPP~~ 266 (342)
+.+|+||.++...
T Consensus 82 ~~id~vi~~ag~~ 94 (247)
T PRK05565 82 GKIDILVNNAGIS 94 (247)
T ss_pred CCCCEEEECCCcC
Confidence 3689999987654
No 416
>PLN02780 ketoreductase/ oxidoreductase
Probab=62.44 E-value=35 Score=31.78 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=47.2
Q ss_pred CCeEEeccCCCcHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~----a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
|..++=.|++ |+++..+ ++.|.+|+.++.+++.++...+.++...-..++..+..|+.+.. ...
T Consensus 53 g~~~lITGAs-~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~ 131 (320)
T PLN02780 53 GSWALVTGPT-DGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL 131 (320)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence 6677777754 4444444 45588999999999988877776654321125667777765311 111
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|+++.|.-.
T Consensus 132 didilVnnAG~ 142 (320)
T PLN02780 132 DVGVLINNVGV 142 (320)
T ss_pred CccEEEEecCc
Confidence 35588887644
No 417
>KOG2782|consensus
Probab=62.25 E-value=5.1 Score=35.24 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=55.6
Q ss_pred CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc--------CCCCCccE
Q psy15742 189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL--------APSLQGDV 258 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~--------~~~~~~D~ 258 (342)
+|..++|..-|.|+.+..+.+. ..++++.|.+|.+-+.|+.-.... ..+++..+.+.+..+ +.+..+|-
T Consensus 43 ~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el-~~~~l~a~Lg~Fs~~~~l~~~~gl~~~~vDG 121 (303)
T KOG2782|consen 43 RGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL-MHPTLKAVLGNFSYIKSLIADTGLLDVGVDG 121 (303)
T ss_pred CCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh-cchhHHHHHhhhHHHHHHHHHhCCCcCCcce
Confidence 4889999999999999988876 467899999999999988776421 112333334443332 13457899
Q ss_pred EEEcCCCCCCc
Q psy15742 259 VFLSPPWGGPE 269 (342)
Q Consensus 259 Ii~nPP~~~~~ 269 (342)
|++|--+....
T Consensus 122 iLmDlGcSSMQ 132 (303)
T KOG2782|consen 122 ILMDLGCSSMQ 132 (303)
T ss_pred EEeecCccccc
Confidence 99886655543
No 418
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.24 E-value=48 Score=28.73 Aligned_cols=71 Identities=17% Similarity=0.061 Sum_probs=47.1
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+++++=.|++ |.++..+++ .|.+|++++.+++..+.+...+... .++.++.+|+.+.. ..+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 5678777764 555555554 4889999999988776654444332 25788899987642 013
Q ss_pred CccEEEEcCC
Q psy15742 255 QGDVVFLSPP 264 (342)
Q Consensus 255 ~~D~Ii~nPP 264 (342)
..|.++.+..
T Consensus 81 ~id~ii~~ag 90 (238)
T PRK05786 81 AIDGLVVTVG 90 (238)
T ss_pred CCCEEEEcCC
Confidence 4688887764
No 419
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=62.17 E-value=46 Score=29.15 Aligned_cols=71 Identities=14% Similarity=0.067 Sum_probs=47.8
Q ss_pred eEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCCc
Q psy15742 192 VVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQG 256 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~~ 256 (342)
++|=.| |+|.++..+++ .|.+|++++.++...+.....+...+ .++.++.+|+.+.. .....
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 344444 66777777665 38899999999877766665554433 36888999987642 12357
Q ss_pred cEEEEcCCC
Q psy15742 257 DVVFLSPPW 265 (342)
Q Consensus 257 D~Ii~nPP~ 265 (342)
|.||.+.-.
T Consensus 80 d~vi~~a~~ 88 (255)
T TIGR01963 80 DILVNNAGI 88 (255)
T ss_pred CEEEECCCC
Confidence 999987643
No 420
>PRK10904 DNA adenine methylase; Provisional
Probab=62.15 E-value=10 Score=34.68 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHH
Q psy15742 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLA 227 (342)
Q Consensus 177 e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a 227 (342)
..++..|...++...+.+|++||.|++.+... ..+++.-|+++..+..-
T Consensus 15 ~~l~~~i~~~~P~~~~yvEPF~GggaV~l~~~--~~~~ilND~n~~Lin~y 63 (271)
T PRK10904 15 YPLLDDIKRHLPKGECLIEPFVGAGSVFLNTD--FSRYILADINSDLISLY 63 (271)
T ss_pred HHHHHHHHHhCCCCCcEEeccCCcceeeEecC--CCeEEEEeCCHHHHHHH
Confidence 35667777777766789999999999887653 24577789999887544
No 421
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=62.10 E-value=53 Score=30.34 Aligned_cols=73 Identities=16% Similarity=0.005 Sum_probs=48.1
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+++++=.| |+|+++..+++ .|.+|+.++.+....+.+...+...+ .++.++.+|+.+.. ..+
T Consensus 6 ~k~vlVTG-as~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 82 (322)
T PRK07453 6 KGTVIITG-ASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPP--DSYTIIHIDLGDLDSVRRFVDDFRALGK 82 (322)
T ss_pred CCEEEEEc-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccC--CceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 45666555 55666666654 48899999998877666555543222 36888899987642 113
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|++|.|.-.
T Consensus 83 ~iD~li~nAg~ 93 (322)
T PRK07453 83 PLDALVCNAAV 93 (322)
T ss_pred CccEEEECCcc
Confidence 58999988643
No 422
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=61.98 E-value=53 Score=29.16 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=46.1
Q ss_pred CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.|+ +|+++..++ +.|.+|+.++.++..++...... + .++.++.+|+.+.. ..+
T Consensus 6 ~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 79 (263)
T PRK06200 6 GQVALITGG-GSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF---G--DHVLVVEGDVTSYADNQRAVDQTVDAFG 79 (263)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHhcC
Confidence 556776665 455555544 44899999999987765544322 2 35778888887642 124
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|++|.|..+
T Consensus 80 ~id~li~~ag~ 90 (263)
T PRK06200 80 KLDCFVGNAGI 90 (263)
T ss_pred CCCEEEECCCC
Confidence 68999988754
No 423
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=61.96 E-value=16 Score=31.64 Aligned_cols=43 Identities=23% Similarity=0.142 Sum_probs=34.4
Q ss_pred CCCeEEeccCC-CcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHH
Q psy15742 189 ASDVVIDGFCG-CGGNTIQFAAVCQKVISIDIDPAKLRLAQHNA 231 (342)
Q Consensus 189 ~~~~vLDlgcG-tG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~ 231 (342)
.+.++|=+|.+ ||.....+.....+|+-+|+.|.+-.....|.
T Consensus 44 E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp~~v 87 (254)
T COG4017 44 EFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFLPNNV 87 (254)
T ss_pred CcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcCCCCc
Confidence 46789999998 78877777777899999999998766655443
No 424
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=61.90 E-value=25 Score=34.34 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=42.1
Q ss_pred CCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEEcCC
Q psy15742 198 CGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPP 264 (342)
Q Consensus 198 cGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~nPP 264 (342)
||.|.++..+++. +..|+.+|.+++.++.++++. .+.++.+|..+.. .-..+|.|++--|
T Consensus 6 iG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~ 74 (453)
T PRK09496 6 VGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPDVLREAGAEDADLLIAVTD 74 (453)
T ss_pred ECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHHHHHHcCCCcCCEEEEecC
Confidence 4558888887763 789999999999887766421 4678888886532 1236887777544
No 425
>PRK06114 short chain dehydrogenase; Provisional
Probab=61.15 E-value=62 Score=28.56 Aligned_cols=74 Identities=14% Similarity=0.025 Sum_probs=47.6
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHH-HHHHHHHHHHHcCCCCcEEEEEccccccC-----------CC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPA-KLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 253 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~-~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~ 253 (342)
++++|=.| |+|+++..+++ .|.+|+.++.+.. .++...+.+...+ .++.++.+|+.+.. ..
T Consensus 8 ~k~~lVtG-~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 8 GQVAFVTG-AGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVARTEAEL 84 (254)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 55666555 66667777665 3889999997643 3444444554433 36778888987642 12
Q ss_pred CCccEEEEcCCCC
Q psy15742 254 LQGDVVFLSPPWG 266 (342)
Q Consensus 254 ~~~D~Ii~nPP~~ 266 (342)
++.|.+|.|.-..
T Consensus 85 g~id~li~~ag~~ 97 (254)
T PRK06114 85 GALTLAVNAAGIA 97 (254)
T ss_pred CCCCEEEECCCCC
Confidence 4679999887643
No 426
>PLN02253 xanthoxin dehydrogenase
Probab=60.71 E-value=58 Score=29.22 Aligned_cols=72 Identities=13% Similarity=0.013 Sum_probs=47.2
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.| |+|+++..+++ .|.+|+.++.++...+.....+. ...++.++.+|+.+.. ..+
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g 93 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG---GEPNVCFFHCDVTVEDDVSRAVDFTVDKFG 93 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc---CCCceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 55666555 56666666654 48999999998776654444332 1236888999987642 113
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|.+|.+.-.
T Consensus 94 ~id~li~~Ag~ 104 (280)
T PLN02253 94 TLDIMVNNAGL 104 (280)
T ss_pred CCCEEEECCCc
Confidence 68999987643
No 427
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=60.70 E-value=4.7 Score=34.24 Aligned_cols=15 Identities=33% Similarity=0.800 Sum_probs=12.8
Q ss_pred ccEEEEcCCCCCCcc
Q psy15742 256 GDVVFLSPPWGGPEY 270 (342)
Q Consensus 256 ~D~Ii~nPP~~~~~~ 270 (342)
||+|++||||.-.+.
T Consensus 1 fdvI~~DPPW~~~~~ 15 (176)
T PF05063_consen 1 FDVIYADPPWPNKSA 15 (176)
T ss_pred CCEEEEeCCCCCcCc
Confidence 899999999987653
No 428
>PRK05855 short chain dehydrogenase; Validated
Probab=60.59 E-value=36 Score=34.11 Aligned_cols=73 Identities=16% Similarity=0.049 Sum_probs=51.4
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+.++|= ..|+|+++..+++ .|.+|+.++.+...++.....++..|. ++.++.+|+.+.. ..+
T Consensus 315 ~~~~lv-~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 315 GKLVVV-TGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCEEEE-ECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 345664 4457777766654 488999999999888777666665554 6889999987753 124
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|++|.|.-.
T Consensus 392 ~id~lv~~Ag~ 402 (582)
T PRK05855 392 VPDIVVNNAGI 402 (582)
T ss_pred CCcEEEECCcc
Confidence 68999988643
No 429
>PRK12743 oxidoreductase; Provisional
Probab=60.35 E-value=62 Score=28.59 Aligned_cols=74 Identities=16% Similarity=-0.031 Sum_probs=48.3
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEe-CCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISID-IDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 253 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD-~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~ 253 (342)
++++|=.|+ +|+++..+++ .|.+|+.+. .+....+.+...+...+. ++.++.+|+.+.. ..
T Consensus 2 ~k~vlItGa-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGV--RAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 346666664 5667766665 388888775 455556665555555553 6889999987642 11
Q ss_pred CCccEEEEcCCCC
Q psy15742 254 LQGDVVFLSPPWG 266 (342)
Q Consensus 254 ~~~D~Ii~nPP~~ 266 (342)
++.|.+|.+.-+.
T Consensus 79 ~~id~li~~ag~~ 91 (256)
T PRK12743 79 GRIDVLVNNAGAM 91 (256)
T ss_pred CCCCEEEECCCCC
Confidence 4689999986543
No 430
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=60.24 E-value=11 Score=31.65 Aligned_cols=64 Identities=19% Similarity=0.109 Sum_probs=49.8
Q ss_pred HHHHHhcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy15742 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246 (342)
Q Consensus 181 ~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D 246 (342)
.++....+.+.+-+|+|+..|++.--+|+. -.++++++.-.+|-...+.|.+.++. -++|.+-.
T Consensus 71 hwivnhckhdttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqlnnp--lvefhhfg 136 (286)
T PF05575_consen 71 HWIVNHCKHDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNVQLNNP--LVEFHHFG 136 (286)
T ss_pred HhhhhhccCCceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeeeeeCCc--ceeeeecc
Confidence 455566667789999999999998888876 56899999999998888888877653 35555433
No 431
>PRK05875 short chain dehydrogenase; Provisional
Probab=60.10 E-value=56 Score=29.18 Aligned_cols=74 Identities=14% Similarity=0.023 Sum_probs=47.9
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------C-----CC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------P-----SL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~-----~~ 254 (342)
++++|=.|+ +|.++..+++ .|.+|++++.++...+.....+...+...++.++.+|+.+.. . .+
T Consensus 7 ~k~vlItGa-sg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (276)
T PRK05875 7 DRTYLVTGG-GSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG 85 (276)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 567776664 4556666554 488999999988776655554443321236788889987642 1 13
Q ss_pred CccEEEEcCC
Q psy15742 255 QGDVVFLSPP 264 (342)
Q Consensus 255 ~~D~Ii~nPP 264 (342)
..|++|.+.-
T Consensus 86 ~~d~li~~ag 95 (276)
T PRK05875 86 RLHGVVHCAG 95 (276)
T ss_pred CCCEEEECCC
Confidence 6799998753
No 432
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=60.06 E-value=60 Score=28.71 Aligned_cols=73 Identities=15% Similarity=0.043 Sum_probs=46.0
Q ss_pred CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.|++ |+++..++ +.|.+|+.++.+ ...+.+.+.+...+ .++.++.+|+.+.. ..+
T Consensus 15 ~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 15 GKVAIVTGGN-TGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5667766664 44555544 458899999887 33444444444333 36888899987642 113
Q ss_pred CccEEEEcCCCC
Q psy15742 255 QGDVVFLSPPWG 266 (342)
Q Consensus 255 ~~D~Ii~nPP~~ 266 (342)
..|.++.+....
T Consensus 91 ~id~li~~ag~~ 102 (258)
T PRK06935 91 KIDILVNNAGTI 102 (258)
T ss_pred CCCEEEECCCCC
Confidence 689999887543
No 433
>PRK05717 oxidoreductase; Validated
Probab=60.00 E-value=51 Score=29.09 Aligned_cols=71 Identities=18% Similarity=0.115 Sum_probs=46.0
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+++++= ..|+|.++..+++ .|.+|+.+|.++......... .+ .++.++.+|+.+.. ..+
T Consensus 10 ~k~vlI-tG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~---~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 83 (255)
T PRK05717 10 GRVALV-TGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKA---LG--ENAWFIAMDVADEAQVAAGVAEVLGQFG 83 (255)
T ss_pred CCEEEE-eCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH---cC--CceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 556664 4556777766655 488999999887654433222 12 36788899987642 113
Q ss_pred CccEEEEcCCCC
Q psy15742 255 QGDVVFLSPPWG 266 (342)
Q Consensus 255 ~~D~Ii~nPP~~ 266 (342)
..|++|.+..+.
T Consensus 84 ~id~li~~ag~~ 95 (255)
T PRK05717 84 RLDALVCNAAIA 95 (255)
T ss_pred CCCEEEECCCcc
Confidence 589999987654
No 434
>PRK05872 short chain dehydrogenase; Provisional
Probab=59.99 E-value=43 Score=30.61 Aligned_cols=72 Identities=19% Similarity=0.132 Sum_probs=46.5
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.| |+|+++..+++ .|.+|+.++.+++.++...+.+.. + ..+..+.+|+.+.. ..+
T Consensus 9 gk~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 9 GKVVVVTG-AARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-D--DRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-C--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 55677555 55566655554 488999999998877665544421 1 24556668877642 114
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|++|.|.-.
T Consensus 85 ~id~vI~nAG~ 95 (296)
T PRK05872 85 GIDVVVANAGI 95 (296)
T ss_pred CCCEEEECCCc
Confidence 68999998754
No 435
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=59.98 E-value=36 Score=27.62 Aligned_cols=72 Identities=17% Similarity=0.036 Sum_probs=49.0
Q ss_pred EEeccCCCcHHHHHHHH----h-CCEEEEEeCC--HHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 193 VIDGFCGCGGNTIQFAA----V-CQKVISIDID--PAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 193 vLDlgcGtG~~~~~~a~----~-~~~v~gvD~s--~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+|=.| |+|+++..+++ . +..|+.+..+ .+..+.....+...+ .++.++.+|+.+.. ..+
T Consensus 3 ~lItG-a~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 3 VLITG-ASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEET-TTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEEC-CCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 33344 45666666554 4 5578888888 666776666666556 48999999987642 135
Q ss_pred CccEEEEcCCCCC
Q psy15742 255 QGDVVFLSPPWGG 267 (342)
Q Consensus 255 ~~D~Ii~nPP~~~ 267 (342)
..|.+|.+.....
T Consensus 80 ~ld~li~~ag~~~ 92 (167)
T PF00106_consen 80 PLDILINNAGIFS 92 (167)
T ss_dssp SESEEEEECSCTT
T ss_pred ccccccccccccc
Confidence 8999999877654
No 436
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=59.60 E-value=54 Score=28.98 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=44.1
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.|+ +|+++..+++ .|.+|+++|.+.. +...+.+...+ .++.++..|+.+.. ..+
T Consensus 10 ~k~~lItG~-~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK08993 10 GKVAVVTGC-DTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFG 84 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 556776665 5566666554 4889999987643 22223333333 36778888987632 124
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|+++.++-+
T Consensus 85 ~~D~li~~Ag~ 95 (253)
T PRK08993 85 HIDILVNNAGL 95 (253)
T ss_pred CCCEEEECCCC
Confidence 68999988754
No 437
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=59.56 E-value=64 Score=28.49 Aligned_cols=71 Identities=17% Similarity=0.075 Sum_probs=43.9
Q ss_pred CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.|+ +|+++..++ +.|.+|+.+|.++. .......+...+ .++.++.+|+.+.. ..+
T Consensus 8 ~k~vlVtGa-s~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 8 GKVVVVTGA-AQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 456666664 455555554 45889999999864 333334443333 25778888887642 123
Q ss_pred CccEEEEcCC
Q psy15742 255 QGDVVFLSPP 264 (342)
Q Consensus 255 ~~D~Ii~nPP 264 (342)
..|.++.|--
T Consensus 84 ~id~lv~nAg 93 (260)
T PRK12823 84 RIDVLINNVG 93 (260)
T ss_pred CCeEEEECCc
Confidence 6899998753
No 438
>PRK08265 short chain dehydrogenase; Provisional
Probab=59.34 E-value=59 Score=28.89 Aligned_cols=70 Identities=20% Similarity=0.094 Sum_probs=45.4
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+++++=.| |+|+++..+++ .|.+|+.++.++..++.....+ + .++.++.+|+.+.. ..+
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G--ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 45666655 55566555554 4889999999986554433322 2 36788899987642 113
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|++|.|.-.
T Consensus 80 ~id~lv~~ag~ 90 (261)
T PRK08265 80 RVDILVNLACT 90 (261)
T ss_pred CCCEEEECCCC
Confidence 68999988653
No 439
>PRK05599 hypothetical protein; Provisional
Probab=59.33 E-value=50 Score=29.18 Aligned_cols=71 Identities=8% Similarity=-0.034 Sum_probs=48.1
Q ss_pred EEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCCccE
Q psy15742 193 VIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQGDV 258 (342)
Q Consensus 193 vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~~D~ 258 (342)
++=.|++ ++++..+|+. |.+|+.++.+++.++...+.++..+- +.+.++.+|+.+.. ..+..|+
T Consensus 3 vlItGas-~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 3 ILILGGT-SDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred EEEEeCc-cHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 4544554 4555555543 88999999999888877777765543 24778889987642 1247899
Q ss_pred EEEcCCC
Q psy15742 259 VFLSPPW 265 (342)
Q Consensus 259 Ii~nPP~ 265 (342)
++.|+-.
T Consensus 81 lv~nag~ 87 (246)
T PRK05599 81 AVVAFGI 87 (246)
T ss_pred EEEecCc
Confidence 9988643
No 440
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=59.32 E-value=21 Score=33.47 Aligned_cols=43 Identities=40% Similarity=0.503 Sum_probs=33.0
Q ss_pred cCCCCeEEeccCCC-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q psy15742 187 CKASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQH 229 (342)
Q Consensus 187 ~~~~~~vLDlgcGt-G~~~~~~a~~-~~~v~gvD~s~~~l~~a~~ 229 (342)
++++.+|+=.|||. |..++.+|+. |.+|+++|.++..++.++.
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 45788999888854 5566666665 7789999999998887754
No 441
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.09 E-value=1e+02 Score=28.88 Aligned_cols=41 Identities=17% Similarity=0.072 Sum_probs=29.7
Q ss_pred CeEEeccCCC--cHHHHHHHHhCCEEEEEeCCHHHHHHHHHHH
Q psy15742 191 DVVIDGFCGC--GGNTIQFAAVCQKVISIDIDPAKLRLAQHNA 231 (342)
Q Consensus 191 ~~vLDlgcGt--G~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~ 231 (342)
.+|-=+|+|+ .+++..++..|..|+.+|.+++.++.++..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i 50 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANV 50 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Confidence 3577777773 3344455667999999999999887766544
No 442
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=58.71 E-value=18 Score=27.33 Aligned_cols=56 Identities=25% Similarity=0.399 Sum_probs=36.7
Q ss_pred eEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEcCCCC
Q psy15742 192 VVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPPWG 266 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nPP~~ 266 (342)
+|| +.||+|..+-.++. ..++-++.+|+ ++++...+..+... ...+|+|++-|...
T Consensus 5 ~IL-l~C~~G~sSS~l~~----------------k~~~~~~~~gi--~~~v~a~~~~~~~~~~~~~Dvill~pqi~ 61 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLVN----------------KMNKAAEEYGV--PVKIAAGSYGAAGEKLDDADVVLLAPQVA 61 (95)
T ss_pred EEE-EECCCchhHHHHHH----------------HHHHHHHHCCC--cEEEEEecHHHHHhhcCCCCEEEECchHH
Confidence 455 78999866554442 23455566787 57888888766531 23689999988744
No 443
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=58.37 E-value=60 Score=28.09 Aligned_cols=74 Identities=12% Similarity=-0.035 Sum_probs=49.6
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------C-----CC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------P-----SL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~-----~~ 254 (342)
+.++|=.| |+|.++..+++ .|..|++++.++...+.....+...+ .++.++.+|+.+.. . -+
T Consensus 5 ~~~ilItG-asg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 5 GKTALVTG-ASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAG--GEARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 45677444 57887777765 38899999999887766555554444 36788889987542 0 13
Q ss_pred CccEEEEcCCCC
Q psy15742 255 QGDVVFLSPPWG 266 (342)
Q Consensus 255 ~~D~Ii~nPP~~ 266 (342)
..|.|+.+.-..
T Consensus 82 ~id~vi~~ag~~ 93 (246)
T PRK05653 82 ALDILVNNAGIT 93 (246)
T ss_pred CCCEEEECCCcC
Confidence 569988876443
No 444
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.95 E-value=62 Score=31.94 Aligned_cols=69 Identities=19% Similarity=0.132 Sum_probs=40.7
Q ss_pred CCeEEeccCCCcHHHH--HHHHhCCEEEEEeCCHH-HHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742 190 SDVVIDGFCGCGGNTI--QFAAVCQKVISIDIDPA-KLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP 264 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~--~~a~~~~~v~gvD~s~~-~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP 264 (342)
+.+|+=+|+|.-+.+. .+++.|.+|+++|.++. ......+.++..|+ ++..++.... ...+|+||..|-
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv----~~~~~~~~~~--~~~~D~Vv~s~G 87 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGA----TVRLGPGPTL--PEDTDLVVTSPG 87 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCC----EEEECCCccc--cCCCCEEEECCC
Confidence 5688888887444322 22334899999996543 33333445555554 4555443321 235899998764
No 445
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=57.79 E-value=21 Score=33.52 Aligned_cols=43 Identities=21% Similarity=0.050 Sum_probs=31.0
Q ss_pred cCCCCeEEeccCCC-cHHHHHHHHh---CCEEEEEeCCHHHHHHHHH
Q psy15742 187 CKASDVVIDGFCGC-GGNTIQFAAV---CQKVISIDIDPAKLRLAQH 229 (342)
Q Consensus 187 ~~~~~~vLDlgcGt-G~~~~~~a~~---~~~v~gvD~s~~~l~~a~~ 229 (342)
.++|++|+=.|||. |.+++.+++. +.+|+++|.+++.++.|+.
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 35788999988753 3344455553 4689999999998888764
No 446
>KOG0022|consensus
Probab=57.28 E-value=26 Score=32.78 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=34.2
Q ss_pred HHhcCCCCeEEeccCCCcHHHHHH-HHh--CCEEEEEeCCHHHHHHHHH
Q psy15742 184 ASRCKASDVVIDGFCGCGGNTIQF-AAV--CQKVISIDIDPAKLRLAQH 229 (342)
Q Consensus 184 ~~~~~~~~~vLDlgcGtG~~~~~~-a~~--~~~v~gvD~s~~~l~~a~~ 229 (342)
.+.+.+|.++.-+|+|.=+++... |+. +.+++|||+++.-.+.|+.
T Consensus 187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred hcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 345678899999988864444433 443 6899999999999988775
No 447
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=57.22 E-value=10 Score=34.33 Aligned_cols=43 Identities=9% Similarity=-0.014 Sum_probs=28.6
Q ss_pred CCCeEEeccCCCcHHHHHHH-HhCCEEEEEeCCHHHHHHHHHHH
Q psy15742 189 ASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNA 231 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~~~~~a-~~~~~v~gvD~s~~~l~~a~~n~ 231 (342)
+|.++||+|||.-..-...| ....+++..|.++...+..++=+
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl 99 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWL 99 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHH
Confidence 46799999999855433333 34788999999999887555443
No 448
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.01 E-value=38 Score=29.58 Aligned_cols=72 Identities=14% Similarity=0.015 Sum_probs=48.2
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------CC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------SL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~~ 254 (342)
+.++|=.| |+|.++..+++ .|.+|++++.++...+....++.. + .++.++.+|+.+... .+
T Consensus 5 ~~~vlItG-asg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 5 GKVAIVTG-ASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G--GRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CcEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 44555544 45566655544 488999999999877766665543 2 368889999876431 13
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
.+|+||.+...
T Consensus 81 ~~d~vi~~ag~ 91 (251)
T PRK07231 81 SVDILVNNAGT 91 (251)
T ss_pred CCCEEEECCCC
Confidence 68999988754
No 449
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=56.90 E-value=26 Score=32.28 Aligned_cols=43 Identities=35% Similarity=0.411 Sum_probs=33.6
Q ss_pred cCCCCeEEeccCC-CcHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q psy15742 187 CKASDVVIDGFCG-CGGNTIQFAAV-CQKVISIDIDPAKLRLAQH 229 (342)
Q Consensus 187 ~~~~~~vLDlgcG-tG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~ 229 (342)
+.++.+||..|+| .|..++.+|+. |.+|++++.++...+.++.
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 4567788887776 47777777876 8899999999988877754
No 450
>PRK06182 short chain dehydrogenase; Validated
Probab=56.83 E-value=58 Score=29.10 Aligned_cols=69 Identities=14% Similarity=-0.003 Sum_probs=45.4
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+.+++=.| |+|+++..+++ .|.+|++++.++..++... . .++.++.+|+.+.. ..+
T Consensus 3 ~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~----~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 3 KKVALVTG-ASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA----S----LGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----h----CCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 44666555 56666766665 3889999999887654322 1 14677888887642 123
Q ss_pred CccEEEEcCCCCC
Q psy15742 255 QGDVVFLSPPWGG 267 (342)
Q Consensus 255 ~~D~Ii~nPP~~~ 267 (342)
..|++|.+..+..
T Consensus 74 ~id~li~~ag~~~ 86 (273)
T PRK06182 74 RIDVLVNNAGYGS 86 (273)
T ss_pred CCCEEEECCCcCC
Confidence 6899999876543
No 451
>PRK07831 short chain dehydrogenase; Provisional
Probab=56.75 E-value=83 Score=27.85 Aligned_cols=75 Identities=16% Similarity=0.109 Sum_probs=48.5
Q ss_pred CCeEEeccCCCcHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccccccC-----------CC
Q psy15742 190 SDVVIDGFCGCGGNTIQ----FAAVCQKVISIDIDPAKLRLAQHNASV-YGVSHKIQFIQGDFFALA-----------PS 253 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~----~a~~~~~v~gvD~s~~~l~~a~~n~~~-~gl~~~i~~~~~D~~~~~-----------~~ 253 (342)
+++++=.|+..++++.. ++..|.+|+.+|.++..++.+.+.++. .+- .++.++.+|+.+.. ..
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 95 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGL-GRVEAVVCDVTSEAQVDALIDAAVERL 95 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 55677666521133333 344588999999998888777666654 232 26788899987642 11
Q ss_pred CCccEEEEcCCC
Q psy15742 254 LQGDVVFLSPPW 265 (342)
Q Consensus 254 ~~~D~Ii~nPP~ 265 (342)
+..|++|.+.-.
T Consensus 96 g~id~li~~ag~ 107 (262)
T PRK07831 96 GRLDVLVNNAGL 107 (262)
T ss_pred CCCCEEEECCCC
Confidence 468999988754
No 452
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=56.60 E-value=31 Score=31.94 Aligned_cols=73 Identities=18% Similarity=0.107 Sum_probs=44.0
Q ss_pred ccCCCcHHHHHHHHh-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEE----EEEccccccC------CCCCccEEE
Q psy15742 196 GFCGCGGNTIQFAAV-----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQ----FIQGDFFALA------PSLQGDVVF 260 (342)
Q Consensus 196 lgcGtG~~~~~~a~~-----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~----~~~~D~~~~~------~~~~~D~Ii 260 (342)
+..|+|+++..+.++ ..+++.+|.|+..+-..++.++...-.++++ .+.+|+.+.. ....+|+||
T Consensus 3 VTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVf 82 (293)
T PF02719_consen 3 VTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVF 82 (293)
T ss_dssp EETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEE
T ss_pred EEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEE
Confidence 456889999998875 3689999999999988888875432212344 4588887642 344799999
Q ss_pred EcCCCCCC
Q psy15742 261 LSPPWGGP 268 (342)
Q Consensus 261 ~nPP~~~~ 268 (342)
---.+.+.
T Consensus 83 HaAA~KhV 90 (293)
T PF02719_consen 83 HAAALKHV 90 (293)
T ss_dssp E------H
T ss_pred EChhcCCC
Confidence 76665543
No 453
>PRK06701 short chain dehydrogenase; Provisional
Probab=56.53 E-value=73 Score=29.02 Aligned_cols=73 Identities=16% Similarity=0.095 Sum_probs=45.1
Q ss_pred CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHH-HHHHHHHHHHHcCCCCcEEEEEccccccC-----------CC
Q psy15742 190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPA-KLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 253 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~-~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~ 253 (342)
++++|=.|+ +|+++..++ +.|.+|+.++.++. ..+.....++..+. ++.++.+|+.+.. ..
T Consensus 46 ~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 46 GKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV--KCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 557777665 555555544 45889999987743 33333444443343 6788999987642 11
Q ss_pred CCccEEEEcCCC
Q psy15742 254 LQGDVVFLSPPW 265 (342)
Q Consensus 254 ~~~D~Ii~nPP~ 265 (342)
+..|++|.+.-.
T Consensus 123 ~~iD~lI~~Ag~ 134 (290)
T PRK06701 123 GRLDILVNNAAF 134 (290)
T ss_pred CCCCEEEECCcc
Confidence 368999987643
No 454
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=56.27 E-value=35 Score=33.25 Aligned_cols=53 Identities=23% Similarity=0.164 Sum_probs=37.1
Q ss_pred HHHHHHHHHhc---CCCCeEEeccCCC-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q psy15742 177 EKVAQHIASRC---KASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQH 229 (342)
Q Consensus 177 e~~~~~i~~~~---~~~~~vLDlgcGt-G~~~~~~a~~-~~~v~gvD~s~~~l~~a~~ 229 (342)
+.+.+.+.+.. -+|++|+=+|||. |......++. |.+|+.+|.++...+.|+.
T Consensus 186 ~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 186 ESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred hhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 44555555543 3688999999995 4444445554 8899999999988777654
No 455
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=56.21 E-value=80 Score=27.55 Aligned_cols=72 Identities=10% Similarity=0.053 Sum_probs=45.5
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.|++ |+++..+++ .|.+|+.++.++. ..+...+...+ .++.++.+|+.+.. ..+
T Consensus 5 ~k~vlItGas-~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 5 GKVALVTGAN-TGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5677776764 455555544 4889999997652 23333333333 36888899987642 114
Q ss_pred CccEEEEcCCCC
Q psy15742 255 QGDVVFLSPPWG 266 (342)
Q Consensus 255 ~~D~Ii~nPP~~ 266 (342)
..|.+|.+.-..
T Consensus 80 ~~d~li~~ag~~ 91 (248)
T TIGR01832 80 HIDILVNNAGII 91 (248)
T ss_pred CCCEEEECCCCC
Confidence 689999887543
No 456
>PRK07041 short chain dehydrogenase; Provisional
Probab=55.37 E-value=62 Score=27.90 Aligned_cols=65 Identities=17% Similarity=0.081 Sum_probs=43.6
Q ss_pred CCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-------CCCCccEEEEcCCC
Q psy15742 198 CGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDVVFLSPPW 265 (342)
Q Consensus 198 cGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-------~~~~~D~Ii~nPP~ 265 (342)
.|+|+++..+++ .|.+|+.++.++..++.....++. + .++.++.+|+.+.. ..+.+|.+|.+...
T Consensus 4 Gas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~ 79 (230)
T PRK07041 4 GGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG-G--APVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD 79 (230)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C--CceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence 356666666554 489999999998766655444431 2 36788899987642 12468999988654
No 457
>PRK07060 short chain dehydrogenase; Provisional
Probab=55.18 E-value=76 Score=27.56 Aligned_cols=69 Identities=13% Similarity=-0.039 Sum_probs=43.0
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-------CCCCccE
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDV 258 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-------~~~~~D~ 258 (342)
+.+++ +..|+|.++..+++ .|.+|+.++.+++.++...... ...++.+|+.+.. ..+..|+
T Consensus 9 ~~~~l-ItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~~~~~~~~~d~ 80 (245)
T PRK07060 9 GKSVL-VTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGET-------GCEPLRLDVGDDAAIRAALAAAGAFDG 80 (245)
T ss_pred CCEEE-EeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------CCeEEEecCCCHHHHHHHHHHhCCCCE
Confidence 45666 44455666666554 3889999999987654333221 2456777876532 1236899
Q ss_pred EEEcCCCC
Q psy15742 259 VFLSPPWG 266 (342)
Q Consensus 259 Ii~nPP~~ 266 (342)
||.+....
T Consensus 81 vi~~ag~~ 88 (245)
T PRK07060 81 LVNCAGIA 88 (245)
T ss_pred EEECCCCC
Confidence 99887654
No 458
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.39 E-value=1.7e+02 Score=26.67 Aligned_cols=40 Identities=25% Similarity=0.117 Sum_probs=29.1
Q ss_pred eEEeccCCCcHH--HHHHHHhCCEEEEEeCCHHHHHHHHHHH
Q psy15742 192 VVIDGFCGCGGN--TIQFAAVCQKVISIDIDPAKLRLAQHNA 231 (342)
Q Consensus 192 ~vLDlgcGtG~~--~~~~a~~~~~v~gvD~s~~~l~~a~~n~ 231 (342)
+|.=+|+|+=+. +..++..|..|+.+|.+++.++.++.++
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERI 46 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH
Confidence 466678775443 3334555899999999999998887764
No 459
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=54.20 E-value=8.3 Score=37.13 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.7
Q ss_pred CCeEEeccCCCcHHHHHHHH
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA 209 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~ 209 (342)
..+|+|+|||+|.+++.+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 45899999999998877754
No 460
>PRK08628 short chain dehydrogenase; Provisional
Probab=53.75 E-value=83 Score=27.70 Aligned_cols=72 Identities=15% Similarity=0.036 Sum_probs=46.6
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+.++|=.| |+|+++..+++ .|.+|+.++.++...+.. ..+...+ .++.++.+|+.+.. ..+
T Consensus 7 ~~~ilItG-asggiG~~la~~l~~~G~~v~~~~r~~~~~~~~-~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK08628 7 DKVVIVTG-GASGIGAAISLRLAEEGAIPVIFGRSAPDDEFA-EELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKFG 82 (258)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHcCCcEEEEcCChhhHHHH-HHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 44565555 45666666654 488999999888776333 3344334 36888999987542 113
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|.|+.++..
T Consensus 83 ~id~vi~~ag~ 93 (258)
T PRK08628 83 RIDGLVNNAGV 93 (258)
T ss_pred CCCEEEECCcc
Confidence 68999988753
No 461
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=53.50 E-value=31 Score=32.18 Aligned_cols=44 Identities=20% Similarity=-0.031 Sum_probs=32.2
Q ss_pred hcCCCCeEEeccCC-CcHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q psy15742 186 RCKASDVVIDGFCG-CGGNTIQFAAV-CQKVISIDIDPAKLRLAQH 229 (342)
Q Consensus 186 ~~~~~~~vLDlgcG-tG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~ 229 (342)
.+++|.+||=.|+| .|..++.+|+. |.+|++++.++...+.|++
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 35678899888864 44455666665 7789999999988777655
No 462
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=53.45 E-value=39 Score=30.52 Aligned_cols=73 Identities=21% Similarity=0.320 Sum_probs=43.7
Q ss_pred CCeEEeccCCCcHHHHHHHHh-------CCEEEEEeC--------------------------CHHHHHHHHHHHHHcCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV-------CQKVISIDI--------------------------DPAKLRLAQHNASVYGV 236 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~-------~~~v~gvD~--------------------------s~~~l~~a~~n~~~~gl 236 (342)
.+.|+|.||-.|+.++.++.. ..++++.|. ....++..+.|+..+|+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 347999999999987765431 356777772 11256777788887776
Q ss_pred -CCcEEEEEccccccCCC---CCccEEEEc
Q psy15742 237 -SHKIQFIQGDFFALAPS---LQGDVVFLS 262 (342)
Q Consensus 237 -~~~i~~~~~D~~~~~~~---~~~D~Ii~n 262 (342)
+++++++.|.+.+.++. .++-++.+|
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD 184 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLD 184 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE-
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEe
Confidence 45899999999877653 234444444
No 463
>KOG1205|consensus
Probab=53.27 E-value=74 Score=29.32 Aligned_cols=78 Identities=15% Similarity=0.046 Sum_probs=58.8
Q ss_pred CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742 190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ 255 (342)
Q Consensus 190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~ 255 (342)
++.|+=-||.+|. ++..+++.|.+++-+-...+.++...+.++..+-.+++..+.+|+.+.. .-+.
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg~ 91 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFGR 91 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcCC
Confidence 6788888888885 5666677789888888888888888666666655335899999998753 2357
Q ss_pred ccEEEEcCCCCC
Q psy15742 256 GDVVFLSPPWGG 267 (342)
Q Consensus 256 ~D~Ii~nPP~~~ 267 (342)
.|+.|.|-=...
T Consensus 92 vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 92 VDVLVNNAGISL 103 (282)
T ss_pred CCEEEecCcccc
Confidence 899999866554
No 464
>PRK09072 short chain dehydrogenase; Provisional
Probab=53.07 E-value=79 Score=28.02 Aligned_cols=72 Identities=15% Similarity=0.127 Sum_probs=47.3
Q ss_pred CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----------SLQ 255 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----------~~~ 255 (342)
+.++|=.|++ |.++..++ +.|.+|++++.++..++.....+ .. ..++.++.+|+.+... .+.
T Consensus 5 ~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 5 DKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY--PGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc--CCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 4456655544 55555544 45899999999988776665544 22 2478889999876421 146
Q ss_pred ccEEEEcCCC
Q psy15742 256 GDVVFLSPPW 265 (342)
Q Consensus 256 ~D~Ii~nPP~ 265 (342)
.|.++.+..+
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 7999988644
No 465
>PRK07806 short chain dehydrogenase; Provisional
Probab=53.07 E-value=81 Score=27.54 Aligned_cols=73 Identities=10% Similarity=-0.026 Sum_probs=45.1
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCH-HHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------C
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDP-AKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------S 253 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~-~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~ 253 (342)
++++|-.|+ +|.++..+++ .|.+|++++.+. ...+.....++..+ .++.++.+|+.+... .
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 557777664 4555555554 488999888754 33444444444333 367888999876421 1
Q ss_pred CCccEEEEcCCC
Q psy15742 254 LQGDVVFLSPPW 265 (342)
Q Consensus 254 ~~~D~Ii~nPP~ 265 (342)
+..|+++.+...
T Consensus 83 ~~~d~vi~~ag~ 94 (248)
T PRK07806 83 GGLDALVLNASG 94 (248)
T ss_pred CCCcEEEECCCC
Confidence 358999988753
No 466
>PRK08226 short chain dehydrogenase; Provisional
Probab=53.05 E-value=99 Score=27.28 Aligned_cols=72 Identities=18% Similarity=0.113 Sum_probs=45.6
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+++++=.|+ +|+++..+++ .|.+|+.++.+....+.+.. +...+ .++.++.+|+.+.. ..+
T Consensus 6 ~~~~lItG~-s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 81 (263)
T PRK08226 6 GKTALITGA-LQGIGEGIARVFARHGANLILLDISPEIEKLADE-LCGRG--HRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH-HHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 456775554 5666666654 48999999998764443332 22223 26778889987642 123
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|++|.+.-+
T Consensus 82 ~id~vi~~ag~ 92 (263)
T PRK08226 82 RIDILVNNAGV 92 (263)
T ss_pred CCCEEEECCCc
Confidence 67999987654
No 467
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=53.04 E-value=46 Score=25.00 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=35.0
Q ss_pred ccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEcCCCCC
Q psy15742 196 GFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPPWGG 267 (342)
Q Consensus 196 lgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nPP~~~ 267 (342)
+.||+|.-+-.++. ...++-++.+|+ ++++.+.+..+... ...+|+|++-||...
T Consensus 7 vvCgsG~~TS~m~~---------------~ki~~~l~~~gi--~~~v~~~~~~e~~~~~~~~D~iv~t~~~~~ 62 (94)
T PRK10310 7 VACGGAVATSTMAA---------------EEIKELCQSHNI--PVELIQCRVNEIETYMDGVHLICTTARVDR 62 (94)
T ss_pred EECCCchhHHHHHH---------------HHHHHHHHHCCC--eEEEEEecHHHHhhhcCCCCEEEECCcccc
Confidence 56888875544421 233455566777 57788877766542 146899999888653
No 468
>PRK09186 flagellin modification protein A; Provisional
Probab=52.98 E-value=78 Score=27.75 Aligned_cols=73 Identities=15% Similarity=-0.001 Sum_probs=47.5
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------C-----CC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------P-----SL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~-----~~ 254 (342)
++++|=.|+ +|+++..+++ .|.+|++++.+++.++.+...+....-...+.++.+|+.+.. . .+
T Consensus 4 ~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 4 GKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 456666555 4566666554 488999999998887776666543211135677788987642 1 13
Q ss_pred CccEEEEcC
Q psy15742 255 QGDVVFLSP 263 (342)
Q Consensus 255 ~~D~Ii~nP 263 (342)
..|++|.+.
T Consensus 83 ~id~vi~~A 91 (256)
T PRK09186 83 KIDGAVNCA 91 (256)
T ss_pred CccEEEECC
Confidence 479999875
No 469
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=52.93 E-value=1.2e+02 Score=26.41 Aligned_cols=74 Identities=15% Similarity=0.044 Sum_probs=47.1
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEe-CCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------C
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISID-IDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------S 253 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD-~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~ 253 (342)
+.++|=.| |+|.++..+++ .+.+|+.+. .++...+.....+...+ .++.++.+|+.+... -
T Consensus 6 ~~~~lItG-~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK12935 6 GKVAIVTG-GAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNHF 82 (247)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56777777 57777777665 378887654 34555444333343333 368889999876421 1
Q ss_pred CCccEEEEcCCCC
Q psy15742 254 LQGDVVFLSPPWG 266 (342)
Q Consensus 254 ~~~D~Ii~nPP~~ 266 (342)
+..|+|+.+..+.
T Consensus 83 ~~id~vi~~ag~~ 95 (247)
T PRK12935 83 GKVDILVNNAGIT 95 (247)
T ss_pred CCCCEEEECCCCC
Confidence 3579999887654
No 470
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.73 E-value=61 Score=31.65 Aligned_cols=71 Identities=23% Similarity=0.251 Sum_probs=42.4
Q ss_pred CCeEEeccCCCcHHHHH--HHHhCCEEEEEeCCH-HHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742 190 SDVVIDGFCGCGGNTIQ--FAAVCQKVISIDIDP-AKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW 265 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~--~a~~~~~v~gvD~s~-~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~ 265 (342)
+++|+=+|+|..+.++. +++.|..|+++|.+. ..+......+...| ++++.+|..+.. .+.+|+||.+|-.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~-~~~~d~vv~~~g~ 78 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG----IELVLGEYPEEF-LEGVDLVVVSPGV 78 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC----CEEEeCCcchhH-hhcCCEEEECCCC
Confidence 56787777776443222 233499999999985 33333223344333 456666665422 2468999987643
No 471
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=52.56 E-value=30 Score=32.33 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=29.6
Q ss_pred CCCeEEeccCC-CcHHHHHHHHh-CC-EEEEEeCCHHHHHHHHH
Q psy15742 189 ASDVVIDGFCG-CGGNTIQFAAV-CQ-KVISIDIDPAKLRLAQH 229 (342)
Q Consensus 189 ~~~~vLDlgcG-tG~~~~~~a~~-~~-~v~gvD~s~~~l~~a~~ 229 (342)
++++|+=.||| .|..++.+|+. |. +|+++|.+++.++.+++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 57788877764 34455555665 55 79999999998888764
No 472
>PRK07074 short chain dehydrogenase; Provisional
Probab=52.16 E-value=1e+02 Score=27.07 Aligned_cols=70 Identities=20% Similarity=0.173 Sum_probs=44.6
Q ss_pred CeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------CCC
Q psy15742 191 DVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------SLQ 255 (342)
Q Consensus 191 ~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~~~ 255 (342)
+++|=.|+ +|.++..++ +.|.+|++++.++...+.....+. + .++.++.+|+.+... .+.
T Consensus 3 k~ilItGa-t~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~--~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07074 3 RTALVTGA-AGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG--D--ARFVPVACDLTDAASLAAALANAAAERGP 77 (257)
T ss_pred CEEEEECC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--C--CceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 34555554 445555554 348899999999876655444331 2 257888999876421 135
Q ss_pred ccEEEEcCCC
Q psy15742 256 GDVVFLSPPW 265 (342)
Q Consensus 256 ~D~Ii~nPP~ 265 (342)
+|.|+.+.-.
T Consensus 78 ~d~vi~~ag~ 87 (257)
T PRK07074 78 VDVLVANAGA 87 (257)
T ss_pred CCEEEECCCC
Confidence 8999998754
No 473
>PRK07832 short chain dehydrogenase; Provisional
Probab=51.98 E-value=71 Score=28.55 Aligned_cols=67 Identities=16% Similarity=0.002 Sum_probs=42.9
Q ss_pred CCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCCccEEEEc
Q psy15742 198 CGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQGDVVFLS 262 (342)
Q Consensus 198 cGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~~D~Ii~n 262 (342)
.|+|+++..+++ .|.+|+.++.+++.++.+...+...+- ..+.++.+|+.+.. ..+..|.+|.+
T Consensus 7 Gas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ 85 (272)
T PRK07832 7 GAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGG-TVPEHRALDISDYDAVAAFAADIHAAHGSMDVVMNI 85 (272)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 345666666544 488999999998877766666554432 23455678876532 12358999987
Q ss_pred CCC
Q psy15742 263 PPW 265 (342)
Q Consensus 263 PP~ 265 (342)
.-.
T Consensus 86 ag~ 88 (272)
T PRK07832 86 AGI 88 (272)
T ss_pred CCC
Confidence 643
No 474
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.92 E-value=54 Score=29.16 Aligned_cols=71 Identities=8% Similarity=-0.114 Sum_probs=45.8
Q ss_pred CCeEEeccCC-CcHHHHHHHH----hCCEEEEEeCCH--HHHHHHHHHHHHcCCCCcEEEEEccccccC-----------
Q psy15742 190 SDVVIDGFCG-CGGNTIQFAA----VCQKVISIDIDP--AKLRLAQHNASVYGVSHKIQFIQGDFFALA----------- 251 (342)
Q Consensus 190 ~~~vLDlgcG-tG~~~~~~a~----~~~~v~gvD~s~--~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----------- 251 (342)
+++++=.|+| +++++..+|+ .|.+|+..+.+. +.++.....+ + .++.++..|+.+..
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---P--EPAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---C--CCCcEEeCCCCCHHHHHHHHHHHHH
Confidence 5678888885 6777776665 488999888663 3333332222 2 24667888887642
Q ss_pred CCCCccEEEEcCCC
Q psy15742 252 PSLQGDVVFLSPPW 265 (342)
Q Consensus 252 ~~~~~D~Ii~nPP~ 265 (342)
..+..|++|.|.-+
T Consensus 82 ~~g~iD~li~nAG~ 95 (256)
T PRK07889 82 HVDGLDGVVHSIGF 95 (256)
T ss_pred HcCCCcEEEEcccc
Confidence 12579999988644
No 475
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.69 E-value=99 Score=27.91 Aligned_cols=73 Identities=10% Similarity=-0.095 Sum_probs=44.4
Q ss_pred CCeEEeccCCC-cHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CC
Q psy15742 190 SDVVIDGFCGC-GGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 253 (342)
Q Consensus 190 ~~~vLDlgcGt-G~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~ 253 (342)
++.+|=.|+++ ++++..+| +.|.+|+.++.+....+.+.......+- . .++.+|+.+.. ..
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~--~-~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGS--D-YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC--c-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 56788778752 45555554 4588999999885432333332232232 3 56788887642 12
Q ss_pred CCccEEEEcCCC
Q psy15742 254 LQGDVVFLSPPW 265 (342)
Q Consensus 254 ~~~D~Ii~nPP~ 265 (342)
+..|++|.|.-+
T Consensus 82 g~iDilVnnAG~ 93 (274)
T PRK08415 82 GKIDFIVHSVAF 93 (274)
T ss_pred CCCCEEEECCcc
Confidence 578999988754
No 476
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.66 E-value=75 Score=28.28 Aligned_cols=72 Identities=8% Similarity=-0.078 Sum_probs=45.3
Q ss_pred CCeEEeccCCC-cHHHHHHHH----hCCEEEEEeCCH---HHHHHHHHHHHHcCCCCcEEEEEccccccC----------
Q psy15742 190 SDVVIDGFCGC-GGNTIQFAA----VCQKVISIDIDP---AKLRLAQHNASVYGVSHKIQFIQGDFFALA---------- 251 (342)
Q Consensus 190 ~~~vLDlgcGt-G~~~~~~a~----~~~~v~gvD~s~---~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---------- 251 (342)
+++++=.|+++ ++++..+|+ .|.+|+.++.+. ..++.....+. + .++.++..|+.+..
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--~--~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--G--QESLLLPCDVTSDEEITACFETIK 82 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--C--CceEEEecCCCCHHHHHHHHHHHH
Confidence 66888888763 666666655 488998886542 33333322221 2 36778889987642
Q ss_pred -CCCCccEEEEcCCC
Q psy15742 252 -PSLQGDVVFLSPPW 265 (342)
Q Consensus 252 -~~~~~D~Ii~nPP~ 265 (342)
.-++.|+++.|.-+
T Consensus 83 ~~~g~ld~lv~nag~ 97 (257)
T PRK08594 83 EEVGVIHGVAHCIAF 97 (257)
T ss_pred HhCCCccEEEECccc
Confidence 12578999988654
No 477
>PRK07201 short chain dehydrogenase; Provisional
Probab=51.39 E-value=87 Score=32.14 Aligned_cols=74 Identities=14% Similarity=-0.009 Sum_probs=51.1
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+++++ +..|+|+++..+++ .|.+|+.++.++..++.....+...+ .++.++.+|+.+.. ..+
T Consensus 371 ~k~vl-ItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 447 (657)
T PRK07201 371 GKVVL-ITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILAEHG 447 (657)
T ss_pred CCEEE-EeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 34555 45556677766654 48899999999988777666665444 36888999987642 123
Q ss_pred CccEEEEcCCCC
Q psy15742 255 QGDVVFLSPPWG 266 (342)
Q Consensus 255 ~~D~Ii~nPP~~ 266 (342)
..|+++.|.-..
T Consensus 448 ~id~li~~Ag~~ 459 (657)
T PRK07201 448 HVDYLVNNAGRS 459 (657)
T ss_pred CCCEEEECCCCC
Confidence 689999887543
No 478
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.87 E-value=72 Score=28.23 Aligned_cols=72 Identities=8% Similarity=-0.098 Sum_probs=44.7
Q ss_pred CCeEEeccCCC-cHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CC
Q psy15742 190 SDVVIDGFCGC-GGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 253 (342)
Q Consensus 190 ~~~vLDlgcGt-G~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~ 253 (342)
+++++=.|.++ ++++..+| +.|.+|+.++.+....+.+++. .+ .++.++.+|+.+.. ..
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~---~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL---VD--EEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh---cc--CceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 56788777764 45555554 4589999888774332222221 11 25778889987642 12
Q ss_pred CCccEEEEcCCCC
Q psy15742 254 LQGDVVFLSPPWG 266 (342)
Q Consensus 254 ~~~D~Ii~nPP~~ 266 (342)
++.|+++.|.-+.
T Consensus 82 g~iD~lv~nAg~~ 94 (252)
T PRK06079 82 GKIDGIVHAIAYA 94 (252)
T ss_pred CCCCEEEEccccc
Confidence 4789999987543
No 479
>PRK06057 short chain dehydrogenase; Provisional
Probab=50.72 E-value=78 Score=27.90 Aligned_cols=68 Identities=21% Similarity=0.125 Sum_probs=43.4
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.|+ +|+++..+++ .|.+|++++.++...+.....+ + ..++.+|+.+.. ..+
T Consensus 7 ~~~vlItGa-sggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~---~----~~~~~~D~~~~~~~~~~~~~~~~~~~ 78 (255)
T PRK06057 7 GRVAVITGG-GSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV---G----GLFVPTDVTDEDAVNALFDTAAETYG 78 (255)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc---C----CcEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 667887776 4566665554 4889999999887655444332 1 146677776532 113
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|+|+.+.-+
T Consensus 79 ~id~vi~~ag~ 89 (255)
T PRK06057 79 SVDIAFNNAGI 89 (255)
T ss_pred CCCEEEECCCc
Confidence 68999988654
No 480
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.31 E-value=84 Score=27.99 Aligned_cols=74 Identities=7% Similarity=-0.169 Sum_probs=45.2
Q ss_pred CCeEEeccC-CCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CC
Q psy15742 190 SDVVIDGFC-GCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 253 (342)
Q Consensus 190 ~~~vLDlgc-GtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~ 253 (342)
++.+|=.|+ |+++++..+|+ .|.+|+..+.+....+.+++-....+ ....+.+|+.+.. ..
T Consensus 6 ~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (261)
T PRK08690 6 GKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELD---SELVFRCDVASDDEINQVFADLGKHW 82 (261)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccC---CceEEECCCCCHHHHHHHHHHHHHHh
Confidence 567887787 46666666664 48898887665433333333322222 2346788887642 12
Q ss_pred CCccEEEEcCCCC
Q psy15742 254 LQGDVVFLSPPWG 266 (342)
Q Consensus 254 ~~~D~Ii~nPP~~ 266 (342)
+..|++|.|.-..
T Consensus 83 g~iD~lVnnAG~~ 95 (261)
T PRK08690 83 DGLDGLVHSIGFA 95 (261)
T ss_pred CCCcEEEECCccC
Confidence 4799999987543
No 481
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=50.25 E-value=19 Score=33.35 Aligned_cols=44 Identities=34% Similarity=0.403 Sum_probs=33.1
Q ss_pred hcCCCCeEEeccCCC-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q psy15742 186 RCKASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQH 229 (342)
Q Consensus 186 ~~~~~~~vLDlgcGt-G~~~~~~a~~-~~~v~gvD~s~~~l~~a~~ 229 (342)
.+.++.+||-.|+|. |..++.+|+. |.+|+++..+++..+.+++
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~ 201 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARE 201 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH
Confidence 356778888887763 6677777776 8899999888887777643
No 482
>PLN02740 Alcohol dehydrogenase-like
Probab=49.88 E-value=32 Score=32.79 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=31.4
Q ss_pred hcCCCCeEEeccCC-CcHHHHHHHHh-CC-EEEEEeCCHHHHHHHHH
Q psy15742 186 RCKASDVVIDGFCG-CGGNTIQFAAV-CQ-KVISIDIDPAKLRLAQH 229 (342)
Q Consensus 186 ~~~~~~~vLDlgcG-tG~~~~~~a~~-~~-~v~gvD~s~~~l~~a~~ 229 (342)
.+++|++||=.||| .|..++.+|+. |. +|+++|.+++.++.+++
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 35678888888764 33344555555 66 69999999998888754
No 483
>PRK08278 short chain dehydrogenase; Provisional
Probab=49.60 E-value=1e+02 Score=27.60 Aligned_cols=74 Identities=9% Similarity=-0.035 Sum_probs=46.3
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHH-------HHHHHHHHHHcCCCCcEEEEEccccccC-------
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAK-------LRLAQHNASVYGVSHKIQFIQGDFFALA------- 251 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~-------l~~a~~n~~~~gl~~~i~~~~~D~~~~~------- 251 (342)
++++|=.|+ +|+++..+++ .|.+|+.++.+... ++...+.+...+ .++.++.+|+.+..
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 6 GKTLFITGA-SRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHH
Confidence 456775555 5666666554 48899999976532 333333344334 36888889987642
Q ss_pred ----CCCCccEEEEcCCCC
Q psy15742 252 ----PSLQGDVVFLSPPWG 266 (342)
Q Consensus 252 ----~~~~~D~Ii~nPP~~ 266 (342)
..+..|.+|.+..+.
T Consensus 83 ~~~~~~g~id~li~~ag~~ 101 (273)
T PRK08278 83 KAVERFGGIDICVNNASAI 101 (273)
T ss_pred HHHHHhCCCCEEEECCCCc
Confidence 113689999887543
No 484
>PRK07825 short chain dehydrogenase; Provisional
Probab=49.42 E-value=98 Score=27.56 Aligned_cols=69 Identities=17% Similarity=-0.056 Sum_probs=45.2
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+.++|=.|+ +|+++..+++ .|.+|+.++.+++.++.....+. ++.++.+|+.+.. ..+
T Consensus 5 ~~~ilVtGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (273)
T PRK07825 5 GKVVAITGG-ARGIGLATARALAALGARVAIGDLDEALAKETAAELG------LVVGGPLDVTDPASFAAFLDAVEADLG 77 (273)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------cceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456665555 5666666554 48899999999877765444332 4678888887642 114
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|++|.|.-.
T Consensus 78 ~id~li~~ag~ 88 (273)
T PRK07825 78 PIDVLVNNAGV 88 (273)
T ss_pred CCCEEEECCCc
Confidence 67999988643
No 485
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=49.27 E-value=1.1e+02 Score=28.36 Aligned_cols=73 Identities=16% Similarity=0.011 Sum_probs=46.6
Q ss_pred CCeEEeccCCCcHHHHHHHH----hC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 253 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~ 253 (342)
+.+++=.|+ +++++..+++ .| .+|+.++.+....+.+.+.+...+ .++.++.+|+.+.. ..
T Consensus 3 ~k~vlITGa-s~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 79 (314)
T TIGR01289 3 KPTVIITGA-SSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPK--DSYTIMHLDLGSLDSVRQFVQQFRESG 79 (314)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 345665554 4555555544 47 899999998877765555443222 35778888886542 12
Q ss_pred CCccEEEEcCCC
Q psy15742 254 LQGDVVFLSPPW 265 (342)
Q Consensus 254 ~~~D~Ii~nPP~ 265 (342)
+..|++|.|...
T Consensus 80 ~~iD~lI~nAG~ 91 (314)
T TIGR01289 80 RPLDALVCNAAV 91 (314)
T ss_pred CCCCEEEECCCc
Confidence 468999998654
No 486
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=49.04 E-value=1.1e+02 Score=32.05 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=48.8
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccccccC-----------CC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGDFFALA-----------PS 253 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~-gl~~~i~~~~~D~~~~~-----------~~ 253 (342)
++++|=. .|+|+++..+++ .|.+|+++|.+...++.....+... +- +++.++.+|+.+.. .-
T Consensus 414 gkvvLVT-GasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~-~~~~~v~~Dvtd~~~v~~a~~~i~~~~ 491 (676)
T TIGR02632 414 RRVAFVT-GGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGA-GRAVALKMDVTDEQAVKAAFADVALAY 491 (676)
T ss_pred CCEEEEe-CCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCC-CcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 4556644 456666666654 4899999999988776665554422 22 35778889987642 12
Q ss_pred CCccEEEEcCCC
Q psy15742 254 LQGDVVFLSPPW 265 (342)
Q Consensus 254 ~~~D~Ii~nPP~ 265 (342)
+..|++|.|.-.
T Consensus 492 g~iDilV~nAG~ 503 (676)
T TIGR02632 492 GGVDIVVNNAGI 503 (676)
T ss_pred CCCcEEEECCCC
Confidence 368999988654
No 487
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=48.95 E-value=5.3 Score=34.63 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=24.2
Q ss_pred ccEEEEcCCCCCCcc---c---cccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742 256 GDVVFLSPPWGGPEY---A---RSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL 305 (342)
Q Consensus 256 ~D~Ii~nPP~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (342)
.|+|++||||..... . .......+++.- -...+.++.+.+.+++.+++
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~~~rvLk~~g~~~i 54 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEW--MEEWLKECYRVLKPGGSIFI 54 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHH--HHHHHHHHHHHEEEEEEEEE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHH--HHHHHHHHHhhcCCCeeEEE
Confidence 489999999998643 0 111122222211 11156667777787777666
No 488
>PRK06138 short chain dehydrogenase; Provisional
Probab=48.93 E-value=95 Score=27.06 Aligned_cols=73 Identities=19% Similarity=0.072 Sum_probs=48.8
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
+++++=.|| +|.++..+++ .|.+|++++.+..........+. .+ .++.++.+|+.+.. ..+
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG--GRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 446666565 5666666554 48899999998877766555554 23 36888999987642 113
Q ss_pred CccEEEEcCCCC
Q psy15742 255 QGDVVFLSPPWG 266 (342)
Q Consensus 255 ~~D~Ii~nPP~~ 266 (342)
..|.|+.+....
T Consensus 81 ~id~vi~~ag~~ 92 (252)
T PRK06138 81 RLDVLVNNAGFG 92 (252)
T ss_pred CCCEEEECCCCC
Confidence 689999876643
No 489
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=48.90 E-value=2.6e+02 Score=27.13 Aligned_cols=78 Identities=17% Similarity=0.078 Sum_probs=47.9
Q ss_pred CCCeEEeccCCCcHH-----HHHHHHhCCEEEEEeCCHHHH------------HHHHHHHHHcCCCCcEEEEEccccccC
Q psy15742 189 ASDVVIDGFCGCGGN-----TIQFAAVCQKVISIDIDPAKL------------RLAQHNASVYGVSHKIQFIQGDFFALA 251 (342)
Q Consensus 189 ~~~~vLDlgcGtG~~-----~~~~a~~~~~v~gvD~s~~~l------------~~a~~n~~~~gl~~~i~~~~~D~~~~~ 251 (342)
.++++|=.|+.+|.- +..+ ..|.++++++...... +...+.++..|. .+..+.+|+.+..
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~--~a~~i~~DVss~E 116 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGL--YAKSINGDAFSDE 116 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCC--ceEEEEcCCCCHH
Confidence 467888888877652 2233 4588888888543221 123333444454 4677889987642
Q ss_pred -----------CCCCccEEEEcCCCCCCc
Q psy15742 252 -----------PSLQGDVVFLSPPWGGPE 269 (342)
Q Consensus 252 -----------~~~~~D~Ii~nPP~~~~~ 269 (342)
.-++.|++|-|-.+....
T Consensus 117 ~v~~lie~I~e~~G~IDiLVnSaA~~~r~ 145 (398)
T PRK13656 117 IKQKVIELIKQDLGQVDLVVYSLASPRRT 145 (398)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCccCCCC
Confidence 125799999887766543
No 490
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=48.86 E-value=80 Score=27.83 Aligned_cols=70 Identities=21% Similarity=0.158 Sum_probs=46.5
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~ 254 (342)
++++|=.| |+|.++..+++ .|.+|+.+|.+...++...... + .++.++.+|+.+.. ..+
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---G--PAAIAVSLDVTRQDSIDRIVAAAVERFG 79 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---C--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 44666555 66666666654 4899999999988766544432 2 35788889987642 113
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|+++.+...
T Consensus 80 ~id~li~~ag~ 90 (257)
T PRK07067 80 GIDILFNNAAL 90 (257)
T ss_pred CCCEEEECCCc
Confidence 68999887654
No 491
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=48.75 E-value=47 Score=25.62 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=32.9
Q ss_pred ccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcCC
Q psy15742 196 GFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPP 264 (342)
Q Consensus 196 lgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nPP 264 (342)
+.||+|..+-.+++ ..++-++.+|+ .+++...+..+.. ....+|+|++-|=
T Consensus 6 lvCg~G~STSlla~----------------k~k~~~~e~gi--~~~i~a~~~~e~~~~~~~~~~DvIll~PQ 59 (104)
T PRK09590 6 IICAAGMSSSMMAK----------------KTTEYLKEQGK--DIEVDAITATEGEKAIAAAEYDLYLVSPQ 59 (104)
T ss_pred EECCCchHHHHHHH----------------HHHHHHHHCCC--ceEEEEecHHHHHHhhccCCCCEEEEChH
Confidence 68999986554442 33555566787 4777777776553 2336899988553
No 492
>PRK12744 short chain dehydrogenase; Provisional
Probab=48.73 E-value=1.2e+02 Score=26.65 Aligned_cols=73 Identities=18% Similarity=0.059 Sum_probs=44.0
Q ss_pred CCeEEeccCCCcHHHHHHHHh----CCEEEEEeCC----HHHHHHHHHHHHHcCCCCcEEEEEccccccC----------
Q psy15742 190 SDVVIDGFCGCGGNTIQFAAV----CQKVISIDID----PAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------- 251 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s----~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---------- 251 (342)
++++|=.| |+|+++..+++. |.+|+.++.+ .+..+...+.++..+ .++.++.+|+.+..
T Consensus 8 ~k~vlItG-a~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 8 GKVVLIAG-GAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CcEEEEEC-CCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHHH
Confidence 45677666 566677776653 7787776543 333433333343333 26888999987642
Q ss_pred -CCCCccEEEEcCCC
Q psy15742 252 -PSLQGDVVFLSPPW 265 (342)
Q Consensus 252 -~~~~~D~Ii~nPP~ 265 (342)
..+..|+++.+.-.
T Consensus 85 ~~~~~id~li~~ag~ 99 (257)
T PRK12744 85 AAFGRPDIAINTVGK 99 (257)
T ss_pred HhhCCCCEEEECCcc
Confidence 12468999987643
No 493
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=48.66 E-value=38 Score=30.74 Aligned_cols=114 Identities=17% Similarity=0.084 Sum_probs=51.3
Q ss_pred CCCCeEEeccCCCcH---HHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEE
Q psy15742 188 KASDVVIDGFCGCGG---NTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVF 260 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~---~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii 260 (342)
+...+|+-+|+|+-- -+-...+ .+..++-.|+.+- +++--..+.+|+..+.++.++|+||
T Consensus 60 P~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~-------------vSDa~~~~~~Dc~t~~~~~k~DlIi 126 (299)
T PF06460_consen 60 PHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY-------------VSDADQSIVGDCRTYMPPDKFDLII 126 (299)
T ss_dssp -TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS---------------B-SSSEEEES-GGGEEESS-EEEEE
T ss_pred ccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh-------------ccccCCceeccccccCCCCcccEEE
Confidence 457899999998532 1112222 3677888888652 2234467899999998888999999
Q ss_pred EcCCCCCCccccccccccccCcCCCCch----hhhHhhhccCCCceeecCCCCCHHHHHHhhCC
Q psy15742 261 LSPPWGGPEYARSSFSIDNIFPEQGGGR----RLFQVARGISPNVGYYLPRTSDVFEIFHDSGK 320 (342)
Q Consensus 261 ~nPP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~ 320 (342)
+|- |.+.. ..-+.....+. +.+ .++.-...+...+++.+-..+.-.++.++++.
T Consensus 127 SDm-Yd~~~---k~~~~~n~~~~--~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~~ 184 (299)
T PF06460_consen 127 SDM-YDGRT---KNCDGENNSKE--GFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMGY 184 (299)
T ss_dssp E-----TTS----SS-S--------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHTT
T ss_pred Eec-ccccc---cccccccCCcc--ccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHhh
Confidence 983 32221 01111111222 222 11122223445555566666665667777653
No 494
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=48.65 E-value=53 Score=30.77 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=42.5
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------CCCCccEE
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDVV 259 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~~~~~D~I 259 (342)
+++||=.| |+|.++.++++ .|.+|++++.++.........+ +...++.++.+|+.+.. ....+|+|
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 79 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELL---NLAKKIEDHFGDIRDAAKLRKAIAEFKPEIV 79 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHH---hhcCCceEEEccCCCHHHHHHHHhhcCCCEE
Confidence 55666555 66776666655 3889999998765432221111 12235778888887642 22257988
Q ss_pred EEcCC
Q psy15742 260 FLSPP 264 (342)
Q Consensus 260 i~nPP 264 (342)
|-.-.
T Consensus 80 ih~A~ 84 (349)
T TIGR02622 80 FHLAA 84 (349)
T ss_pred EECCc
Confidence 86543
No 495
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.64 E-value=1.1e+02 Score=27.49 Aligned_cols=73 Identities=14% Similarity=-0.103 Sum_probs=44.0
Q ss_pred CCeEEeccCCC-cHH----HHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CC
Q psy15742 190 SDVVIDGFCGC-GGN----TIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 253 (342)
Q Consensus 190 ~~~vLDlgcGt-G~~----~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~ 253 (342)
++++|=.|++. +++ +..+++.|.+|+.++.+....+..++-....| ...++.+|+.+.. ..
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g---~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG---SDFVLPCDVEDIASVDAVFEALEKKW 83 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC---CceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 56788888765 234 44445568999998877543333333222223 2246788887642 12
Q ss_pred CCccEEEEcCCC
Q psy15742 254 LQGDVVFLSPPW 265 (342)
Q Consensus 254 ~~~D~Ii~nPP~ 265 (342)
+..|++|.|.-.
T Consensus 84 g~iD~lVnnAG~ 95 (271)
T PRK06505 84 GKLDFVVHAIGF 95 (271)
T ss_pred CCCCEEEECCcc
Confidence 578999988643
No 496
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=48.60 E-value=57 Score=31.53 Aligned_cols=70 Identities=19% Similarity=0.081 Sum_probs=47.6
Q ss_pred eEEeccCCCcHHHHHHH----HhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----CCCccEEEE-
Q psy15742 192 VVIDGFCGCGGNTIQFA----AVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFL- 261 (342)
Q Consensus 192 ~vLDlgcGtG~~~~~~a----~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----~~~~D~Ii~- 261 (342)
+||=+||| ..+..+| +.+ .+|+..|.|.+.++.+..+.. .+++....|+.+... -..+|+|+.
T Consensus 3 ~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 3 KILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred cEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 68888994 4444443 334 799999999988877766543 278889989887631 125688874
Q ss_pred cCCCCCC
Q psy15742 262 SPPWGGP 268 (342)
Q Consensus 262 nPP~~~~ 268 (342)
=|||...
T Consensus 76 ~p~~~~~ 82 (389)
T COG1748 76 APPFVDL 82 (389)
T ss_pred CCchhhH
Confidence 5666544
No 497
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=48.59 E-value=22 Score=32.98 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=31.4
Q ss_pred hcCCCCeEEeccCC-CcHHHHHHHHh-CC-EEEEEeCCHHHHHHHHH
Q psy15742 186 RCKASDVVIDGFCG-CGGNTIQFAAV-CQ-KVISIDIDPAKLRLAQH 229 (342)
Q Consensus 186 ~~~~~~~vLDlgcG-tG~~~~~~a~~-~~-~v~gvD~s~~~l~~a~~ 229 (342)
.++++.+||-.|+| .|..++.+|+. |. .+++++.++...+.+++
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 35567888887665 46666777776 64 88999988877776654
No 498
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=48.57 E-value=56 Score=30.30 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=38.5
Q ss_pred CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc
Q psy15742 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY 234 (342)
Q Consensus 188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~ 234 (342)
..|.+|.-+|+|--...-++++.-.+|.+||+++..+..-+-++...
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lklaA~ 108 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLAAF 108 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHHHH
Confidence 34889999999977777778888889999999999998877776543
No 499
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.46 E-value=1e+02 Score=27.60 Aligned_cols=74 Identities=5% Similarity=-0.198 Sum_probs=44.2
Q ss_pred CCeEEeccCCCc-HH----HHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CC
Q psy15742 190 SDVVIDGFCGCG-GN----TIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 253 (342)
Q Consensus 190 ~~~vLDlgcGtG-~~----~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~ 253 (342)
++++|=.|++.| ++ +..+++.|.+|+.++.+...-+.+.+ +.... +.+.++.+|+.+.. .-
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE-FAAQL--GSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHH-HHhcc--CCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 567888887652 44 44455568899988877422222222 22211 24567788887642 12
Q ss_pred CCccEEEEcCCCC
Q psy15742 254 LQGDVVFLSPPWG 266 (342)
Q Consensus 254 ~~~D~Ii~nPP~~ 266 (342)
++.|++|.|.-+.
T Consensus 83 g~iD~linnAg~~ 95 (262)
T PRK07984 83 PKFDGFVHSIGFA 95 (262)
T ss_pred CCCCEEEECCccC
Confidence 4689999997543
No 500
>PRK12829 short chain dehydrogenase; Provisional
Probab=48.19 E-value=81 Score=27.74 Aligned_cols=71 Identities=18% Similarity=0.040 Sum_probs=46.9
Q ss_pred CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------CC
Q psy15742 190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------SL 254 (342)
Q Consensus 190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~~ 254 (342)
++++|=.|+ +|.++..+++ .|.+|++++.+++..+....... +. ++.++.+|+.+... .+
T Consensus 11 ~~~vlItGa-~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~--~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (264)
T PRK12829 11 GLRVLVTGG-ASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP--GA--KVTATVADVADPAQVERVFDTAVERFG 85 (264)
T ss_pred CCEEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--cC--ceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 567886665 4666666654 38899999999876655443332 21 56788888876420 13
Q ss_pred CccEEEEcCCC
Q psy15742 255 QGDVVFLSPPW 265 (342)
Q Consensus 255 ~~D~Ii~nPP~ 265 (342)
..|.|+.+...
T Consensus 86 ~~d~vi~~ag~ 96 (264)
T PRK12829 86 GLDVLVNNAGI 96 (264)
T ss_pred CCCEEEECCCC
Confidence 68999987654
Done!