RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15742
(342 letters)
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 197 bits (502), Expect = 4e-62
Identities = 105/259 (40%), Positives = 148/259 (57%), Gaps = 44/259 (16%)
Query: 77 LPSEFGSQRKKKRRRKKRSFELNYQEDLGDLENVPEEIWANPYLNKYYQQRYLYWSRYDE 136
L SE +KKK ++K + + +P EI A P L KY+ QRY +SR+D+
Sbjct: 3 LGSEV---KKKKNKKKNKK-----------VNGLPPEIAAVPELAKYWAQRYRLFSRFDD 48
Query: 137 GILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDG 196
GI +D E W+SVTPEK+A+HIA R + DVV+D
Sbjct: 49 GIKLDREGWFSVTPEKIAEHIAGRVS-----------------------QSFKCDVVVDA 85
Query: 197 FCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG 256
FCG GGNTIQFA +VI+IDIDP K+ LA++NA VYG++ KI+FI GDF LA L+
Sbjct: 86 FCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKA 145
Query: 257 DVVFLSPPWGGPEYARS-SFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIF 315
DVVFLSPPWGGP+YA + +F I + G +F++++ I+ N+ Y+LPR +D+ ++
Sbjct: 146 DVVFLSPPWGGPDYATAETFDIRTMMSP--DGFEIFRLSKKITNNIVYFLPRNADIDQVA 203
Query: 316 HDSGKKGSF----ISLTGR 330
+G G L +
Sbjct: 204 SLAGPGGQVEIEQNFLNNK 222
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 102 bits (255), Expect = 1e-24
Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 4/114 (3%)
Query: 169 DGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 228
+ + + + + V+D G G + I + + I I+ + A+
Sbjct: 73 LSLEQSSGAVTSSYKSRFIREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAAR 132
Query: 229 HNASVYG-VSHKIQFIQGDFFALAPSLQG---DVVFLSPPWGGPEYARSSFSID 278
HN + + + GDF P ++ D +++ P R D
Sbjct: 133 HNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPARRSGADKRVYAIAD 186
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 61.4 bits (149), Expect = 8e-11
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKI 240
I + +DVV+D F G G +I +K+ +IDI+P + L + N + + HKI
Sbjct: 187 ARIMKKVSLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKI 245
Query: 241 QFIQGDFFALAPSLQGDVVFLSPPWGGPEY 270
I D + +G+ V ++ P ++
Sbjct: 246 IPILSDVREVDV--KGNRVIMNLPKFAHKF 273
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 57.0 bits (138), Expect = 6e-10
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
DV +D CG GG T++ A ++V +ID +P + + N +G+ + ++GD
Sbjct: 35 DVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA 94
Query: 251 APSLQG-DVVFL 261
+ D+ +
Sbjct: 95 LCKIPDIDIAVV 106
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 57.5 bits (139), Expect = 2e-09
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 177 EKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNA 231
+AQ + + V+D F G G ++ A+ V + D+D +L LA+ A
Sbjct: 189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAA 248
Query: 232 SVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG 266
G+S I+F++ D L + D + +PP G
Sbjct: 249 LASGLSW-IRFLRADARHLPRFFPEVDRILANPPHG 283
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump
domain, tRNA methyltransferase; HET: SAM; 1.95A
{Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Length = 373
Score = 57.5 bits (139), Expect = 2e-09
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 177 EKVAQHIASRCKAS-DVVIDGFCGCGGNTIQFA--AVCQKVISIDIDPAKLRLAQHNASV 233
+A + + V+D CG G I+ A ++I I+ L A+ NA
Sbjct: 204 ASIANAMIELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALA 263
Query: 234 YGVSHKIQFIQGDFFAL-APSLQGDVVFLSPPWG 266
GV KI+FIQGD L D + P+G
Sbjct: 264 AGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYG 297
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 56.5 bits (136), Expect = 2e-09
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 1/98 (1%)
Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHK 239
+A K ++V+D F G G ++ A KVI+I+ DP + N + V +
Sbjct: 117 VRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDR 176
Query: 240 IQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSI 277
+ D D + + E+ + SI
Sbjct: 177 MSAYNMDNRDFPGENIADRILMGYVVRTHEFIPKALSI 214
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 54.1 bits (130), Expect = 6e-09
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQF 242
+A +V+D G G +T A + +KV + D+ L S G+ + +
Sbjct: 16 LAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIEN-TEL 74
Query: 243 IQGDFFALAPSLQGDV 258
I L ++ +
Sbjct: 75 ILDGHENLDHYVREPI 90
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 55.2 bits (133), Expect = 1e-08
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHK 239
+ + D V+D F GG I A A +VI ID P + A+ NA + GV +
Sbjct: 209 LALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDR 268
Query: 240 IQFIQGDFFALAPSLQG-----DVVFLSPPWGGPEYARSSFSIDNI 280
++FI G F LQ D+V L P P + + +
Sbjct: 269 MKFIVGSAFEEMEKLQKKGEKFDIVVLDP----PAFVQHEKDLKAG 310
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 53.0 bits (128), Expect = 1e-08
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
DVV+D CG GG T++ A C+ V +ID + + + N + + + + Q I+G +
Sbjct: 37 DVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKN-CQIIKGRAEDV 95
Query: 251 APSLQGDVVFLSPPWGG 267
L+ + F+ GG
Sbjct: 96 LDKLEFNKAFI----GG 108
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 54.3 bits (130), Expect = 1e-08
Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 19/128 (14%)
Query: 177 EKVAQHIASRCKASDVVID-GFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNAS 232
+ + + VV CG + +++ ID DP L A A+
Sbjct: 106 GHFRRALQRHLRPGCVVASVP-CGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAA 164
Query: 233 VYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLF- 291
+ ++ +I + D + L D++ S ++ P+ L+
Sbjct: 165 GHALAGQITLHRQDAWKLDTREGYDLLT-------------SNGLNIYEPDDARVTELYR 211
Query: 292 QVARGISP 299
+ + + P
Sbjct: 212 RFWQALKP 219
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 52.9 bits (127), Expect = 2e-08
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
+++ D G G ++++ + I+I+ ++ Q N YG+S +++ +QG A
Sbjct: 57 ELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA 116
Query: 251 APSLQG-DVVFLS 262
L + VF+
Sbjct: 117 LADLPLPEAVFIG 129
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 53.9 bits (130), Expect = 3e-08
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKI 240
+ + + + V+D + GG ++ A +++D D L + A G+
Sbjct: 206 RLFEAMVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVD- 264
Query: 241 QFIQGDFFALAPSLQG--DVVFLSPP 264
G+ L+G V L PP
Sbjct: 265 -IRHGEALPTLRGLEGPFHHVLLDPP 289
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 52.7 bits (126), Expect = 4e-08
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 7/112 (6%)
Query: 169 DGWYSVTP-EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLA 227
W + + + + CG G + + A+ + V+ +DI + L A
Sbjct: 45 TPWDQGRATPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKA 104
Query: 228 QHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS------PPWGGPEYARS 273
+ F++ D F P+ D++F P P +A+S
Sbjct: 105 NETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKS 156
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 52.7 bits (126), Expect = 5e-08
Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 5/120 (4%)
Query: 143 ESWYSVTP--EKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGC 200
++W+ V + + + CK D Y+ T A++ + V+D CG
Sbjct: 73 QAWHRVEALSDDLECTLGFYCKKEDYFSK-KYNTTAIHGDVVDAAKIISPCKVLDLGCGQ 131
Query: 201 GGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVF 260
G N++ + + V S D + + + I D A D +
Sbjct: 132 GRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQENYDFIV 189
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 51.8 bits (124), Expect = 6e-08
Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 12/130 (9%)
Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSH 238
Q +A+ ++D I C I+ ++ + A N S +G++
Sbjct: 13 QKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTS 72
Query: 239 KIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGI- 297
KI + + GG I +I +L V +
Sbjct: 73 KIDVRLANGLSAFEEADNIDTITICGMGG-------RLIADILNN--DIDKLQHVKTLVL 123
Query: 298 SPNVGYYLPR 307
PN R
Sbjct: 124 QPNNREDDLR 133
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Length = 385
Score = 51.9 bits (125), Expect = 1e-07
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 218 DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 266
DID + +A+ NA + GV I+F GD + + +PP+G
Sbjct: 264 DIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYG 312
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170,
putative RNA methylase, PSI,MCSG, structu genomics;
1.50A {Listeria monocytogenes str}
Length = 393
Score = 51.5 bits (124), Expect = 1e-07
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 218 DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 266
DID + +A+ NA G+ I F Q + VV +PP+G
Sbjct: 270 DIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYG 318
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase,
transferase; HET: SAH; 1.96A {Streptococcus mutans}
Length = 384
Score = 51.2 bits (123), Expect = 2e-07
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 218 DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 266
D D + +A+ NA G+ ++ Q + V+ +PP+G
Sbjct: 263 DFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYG 311
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 50.6 bits (121), Expect = 2e-07
Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 193 VIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA 251
+ID G G + + + K++ ++I +A+ + + + +I+ I+ D +
Sbjct: 53 IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT 112
Query: 252 PSLQG---DVVFLSPPW 265
+ D+V +PP+
Sbjct: 113 DLIPKERADIVTCNPPY 129
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 49.9 bits (119), Expect = 3e-07
Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSH 238
+ +AS ++ + D I+ ++ + AQ G++
Sbjct: 13 EKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTE 72
Query: 239 KIQFIQGDFFAL 250
+I +G+ A+
Sbjct: 73 QIDVRKGNGLAV 84
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 50.6 bits (122), Expect = 3e-07
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 247
+ D V+D FCG G T+ A V+ ++ PA + Q NA + G+ + + F +
Sbjct: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENL 343
Query: 248 FALAPSLQG-----DVVFLSPP 264
D V L P
Sbjct: 344 EEDVTKQPWAKNGFDKVLLDPA 365
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 49.0 bits (117), Expect = 5e-07
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 164 SDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPA 222
S + Y + E + + ID G G +I A + ++D
Sbjct: 21 SKTLFAPIYPIIAENIINRFGIT---AGTCIDIGSGPGALSIALAKQSDFSIRALDFSKH 77
Query: 223 KLRLAQHNASVYGVSHKIQFIQGDFFAL 250
+A N + ++ +IQ +QGD +
Sbjct: 78 MNEIALKNIADANLNDRIQIVQGDVHNI 105
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 49.1 bits (117), Expect = 5e-07
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
++ D CG GG T+ A +V +D + + NA G+ +++ I G
Sbjct: 45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGS 104
Query: 247 FFAL 250
L
Sbjct: 105 MDDL 108
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 48.4 bits (115), Expect = 6e-07
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVS 237
+I K D V+D CG G +T A++ +V DI + + +
Sbjct: 14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI 73
Query: 238 HKIQFIQGDFFALAPSLQGDV 258
++ I+ + + V
Sbjct: 74 DRVTLIKDGHQNMDKYIDCPV 94
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 49.1 bits (117), Expect = 6e-07
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
+ D CG GG T+ A + ++ ID+ P + + NA + +++ I G
Sbjct: 45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGS 104
Query: 247 FFAL 250
L
Sbjct: 105 MDNL 108
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 47.9 bits (114), Expect = 1e-06
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 198 CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD 257
CG G N++ AA V + D + + + S+ + + + D L Q D
Sbjct: 41 CGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLTFDRQYD 99
Query: 258 VVF 260
+
Sbjct: 100 FIL 102
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 48.3 bits (114), Expect = 1e-06
Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 6/113 (5%)
Query: 154 AQHIASRCKASDVVIDGWYSVTPEKVAQ--HIASRCKASDVVIDGFCGCGGNTIQFAAVC 211
AQ + + + ++ ++ + R + + + G T +
Sbjct: 85 AQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHV 144
Query: 212 Q--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262
+V ++I+P L++ GV + I GD + L+ DV+ ++
Sbjct: 145 YGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-DGLEFDVLMVA 195
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 48.7 bits (117), Expect = 1e-06
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 249
+ ++D + G G I A V D + + +A+ N + V + D
Sbjct: 291 GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDA-EFEVASDREV 349
Query: 250 LAPSLQGDVVFLSPP 264
D V + PP
Sbjct: 350 SVKGF--DTVIVDPP 362
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
methyltransferase, adoMet, structural genomics; 1.80A
{Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB:
1wxw_A 2cww_A*
Length = 382
Score = 48.5 bits (116), Expect = 2e-06
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 193 VIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP 252
+D F GG + A ++V+++D LR A+ NA + G+ ++ ++ + F L
Sbjct: 213 ALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLR 271
Query: 253 SLQG-----DVVFLSPPWGGPEYARSSFSIDN 279
L+ D+V L P P +A+ ++
Sbjct: 272 RLEKEGERFDLVVLDP----PAFAKGKKDVER 299
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 47.0 bits (111), Expect = 2e-06
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 192 VVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
VV D G G + + ++VI +++D + + N + K + G
Sbjct: 52 VVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIG--DVS 107
Query: 251 APSLQGDVVFLSPPWG 266
+ + D+V ++PP+G
Sbjct: 108 EFNSRVDIVIMNPPFG 123
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 1.80A
{Neisseria gonorrhoeae}
Length = 258
Score = 47.5 bits (112), Expect = 2e-06
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 12/95 (12%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPA-------KLRLAQHNASVYGVSHKI 240
A V D G G ++ A++ V + + PA +R A N + +I
Sbjct: 82 TAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARI 141
Query: 241 QFIQGDFFALAPSL-----QGDVVFLSPPWGGPEY 270
G+ P+L + D+V+L P +
Sbjct: 142 NLHFGNAAEQMPALVKTQGKPDIVYLDPMYPERRK 176
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 46.4 bits (110), Expect = 3e-06
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGV 236
+ +AS +++D G + V + I+ ++ + A N +G+
Sbjct: 7 ELVASFVSQGAILLD--VGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL 64
Query: 237 SHKIQFIQGDFFAL 250
KIQ + A
Sbjct: 65 KEKIQVRLANGLAA 78
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 47.5 bits (112), Expect = 3e-06
Identities = 33/228 (14%), Positives = 66/228 (28%), Gaps = 30/228 (13%)
Query: 62 FNILEDVAYQETLNTLPSEFGSQRKKKRRRKKRSFELNYQEDLGDLEN----VPEEIWAN 117
+ ++ ET+ + E + ++ E + L + + I
Sbjct: 49 HDAAHEI--IETIRWVCEEIPDLKLAMENYVLIDYDTKSFESMQRLCDKYNRAIDSIHQL 106
Query: 118 P-YLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTP 176
+ + + IL + PEK+ + Y T
Sbjct: 107 WKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFS--------PEVYGETS 158
Query: 177 EKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNA- 231
+ + D+ +D G G +Q AA C+ ++ + A+
Sbjct: 159 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDR 218
Query: 232 ------SVYGVSH-KIQFIQGDFFAL---APSLQGDVVFLSPPWGGPE 269
YG H + +GDF + V+F++ GPE
Sbjct: 219 EFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPE 266
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 46.7 bits (111), Expect = 3e-06
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 184 ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI 243
+ C+A V+D G G + F+ Q+ I +D + +A A GV + ++F
Sbjct: 16 TAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVEN-VRFQ 74
Query: 244 QGDFFAL 250
QG +L
Sbjct: 75 QGTAESL 81
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 46.8 bits (111), Expect = 4e-06
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG 245
V++ CG G T+ A ++ SIDI P L A+ N G+ + ++F+Q
Sbjct: 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN-VKFLQA 94
Query: 246 DFFAL 250
+ F+L
Sbjct: 95 NIFSL 99
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 46.1 bits (109), Expect = 4e-06
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 198 CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD 257
G G T + + +V ++D + A + ++F Q D F P Q D
Sbjct: 55 SGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHG-----LDNVEFRQQDLFDWTPDRQWD 109
Query: 258 VVF 260
VF
Sbjct: 110 AVF 112
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 44.6 bits (106), Expect = 1e-05
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGD 246
D ++D CG G I A + DI+ ++LA+ N + + + I+ + D
Sbjct: 51 DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD 110
Query: 247 FFALAPSLQGDVVFLSPP 264
+ + + + +PP
Sbjct: 111 LYENVKDRKYNKIITNPP 128
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 44.8 bits (106), Expect = 1e-05
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 169 DGWYSVTPEKVAQHIASRCKASDVVID-GFCGCGGNTIQFAAVCQKVISIDIDPAKLRLA 227
D + ++ A ++ G C G T + A C+++ ID+ P + A
Sbjct: 31 DNPFERERHTQLLRLSLSSGAVSNGLEIG-CAAGAFTEKLAPHCKRLTVIDVMPRAIGRA 89
Query: 228 QHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262
+ I + D + + D++ ++
Sbjct: 90 CQRTKRWS---HISWAATDILQFSTAELFDLIVVA 121
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 45.4 bits (108), Expect = 1e-05
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 193 VIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFAL 250
V++ F GG + C +V+S+D L +A+ N + + K +F++ D F L
Sbjct: 224 VLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL 283
Query: 251 APSLQG-----DVVFLSPP 264
+ + DV+ + PP
Sbjct: 284 LRTYRDRGEKFDVIVMDPP 302
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 44.9 bits (107), Expect = 1e-05
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP 264
KV + ++D A+ N + ++ G DV+F +PP
Sbjct: 81 KVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
methyltransferase, ribosome RNA, SAH, RLML; HET: SAH
OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Length = 703
Score = 45.8 bits (109), Expect = 2e-05
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 218 DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD---VVFLSPPWG 266
D D ++ A+ NA + G+ I F D L L V +PP+G
Sbjct: 263 DSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYG 314
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 44.5 bits (105), Expect = 2e-05
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 9/112 (8%)
Query: 140 MDEESWYSVTPEKVAQHIASRCKASDVVIDG-WYSVTPEKVAQHIASRCKASDVVIDGFC 198
M + +W+ E + S + + W S + + K V+D C
Sbjct: 7 MTKFNWH----ESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGC 62
Query: 199 GCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
G G T + + K + +DI ++ + + FI+GD +L
Sbjct: 63 GDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGE----GPDLSFIKGDLSSL 110
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 44.9 bits (107), Expect = 2e-05
Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 193 VIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP 252
+++ +CG G ++ A +V++ +I + AQ+N + + + +Q I+
Sbjct: 217 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDN-VQIIRMAAEEFTQ 275
Query: 253 SLQG-----------------DVVFLSPP 264
++ G + +F+ PP
Sbjct: 276 AMNGVREFNRLQGIDLKSYQCETIFVDPP 304
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 43.9 bits (103), Expect = 2e-05
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 191 DVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 249
VID G G + + V + DIDP + A+ N + F+
Sbjct: 53 RSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVA--DV 104
Query: 250 LAPSLQGDVVFLSPPWG 266
S + D ++PP+G
Sbjct: 105 SEISGKYDTWIMNPPFG 121
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 44.1 bits (104), Expect = 2e-05
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV 236
E + + K V+D CG GG + +V+ +DI +R A+ A
Sbjct: 26 ETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRES 85
Query: 237 SHKIQFIQGDFFAL 250
++FI GD L
Sbjct: 86 --NVEFIVGDARKL 97
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 43.6 bits (103), Expect = 2e-05
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 191 DVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF 248
+ + D G G I++ + +I + NA GVS +Q
Sbjct: 27 ETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSD-RIAVQQGAP 85
Query: 249 ALAPSLQG--DVVFLSP 263
+ DV+F+
Sbjct: 86 RAFDDVPDNPDVIFIGG 102
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 44.5 bits (105), Expect = 2e-05
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
+ +D G GG + ++I P + + + + G++ I G
Sbjct: 81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS 140
Query: 247 FFAL 250
F +
Sbjct: 141 FLEI 144
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 44.0 bits (105), Expect = 3e-05
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 249
V + D+ + +A+ NA +GVS + +G+F
Sbjct: 148 IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE 184
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 44.0 bits (104), Expect = 3e-05
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 181 QHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS 237
+ + ++ D V+D CG G ++ A +V I I ++ A A+ G++
Sbjct: 51 DEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA 110
Query: 238 HKIQFIQGDFFAL 250
+++ F D L
Sbjct: 111 NRVTFSYADAMDL 123
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9
c.66.1.51 PDB: 3ldf_A*
Length = 385
Score = 43.8 bits (104), Expect = 5e-05
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 193 VIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFA 249
V++ F ++ AA+ S+D+ L+ + + Q + D F
Sbjct: 216 VLNLFSYTAAFSVA-AAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD 274
Query: 250 LAPSLQG-----DVVFLSPP 264
+ D++ + PP
Sbjct: 275 YFKYARRHHLTYDIIIIDPP 294
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 43.2 bits (101), Expect = 6e-05
Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 5/92 (5%)
Query: 186 RCKASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQF 242
+ +++ G G + + ++ D L+ A N S + ++
Sbjct: 107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRT 166
Query: 243 IQGDFFALAPSLQGDVVF--LSPPWGGPEYAR 272
+ D D V + PW +
Sbjct: 167 SRSDIADFISDQMYDAVIADIPDPWNHVQKIA 198
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: SAH; 2.00A
{Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A
2pkw_A
Length = 258
Score = 42.4 bits (99), Expect = 8e-05
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 10/92 (10%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP--------AKLRLAQHNASVYGVSHK 239
V+D G G + A+V +V ++ +P R + +
Sbjct: 87 DYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQER 146
Query: 240 IQFIQGDFFALAPSL--QGDVVFLSPPWGGPE 269
+Q I + + VV+L P + +
Sbjct: 147 LQLIHASSLTALTDITPRPQVVYLDPMFPHKQ 178
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 42.2 bits (100), Expect = 9e-05
Identities = 12/63 (19%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 204 TIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG---DV 258
++QFA++ V +I+ + ++ A+ N + Y ++++ I+G+ ++ D+
Sbjct: 86 SMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDM 145
Query: 259 VFL 261
+F+
Sbjct: 146 IFI 148
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 42.6 bits (100), Expect = 9e-05
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 186 RCKASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNAS---VYGVSHKI 240
+ + D G G + AA + +V + A+ + S +I
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARI 92
Query: 241 QFIQGDFFALA--------PSLQGDVVFLSPPW 265
+ ++ D A P V ++PP+
Sbjct: 93 EVLEADVTLRAKARVEAGLPDEHFHHVIMNPPY 125
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 41.8 bits (98), Expect = 9e-05
Identities = 11/77 (14%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 191 DVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF 248
V+ D G +I+ + + ++ +++ +P L + N + + + ++
Sbjct: 42 LVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARN-VTLVEAFAP 100
Query: 249 ALAPSLQG-DVVFLSPP 264
L D VF+
Sbjct: 101 EGLDDLPDPDRVFIGGS 117
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural
genomics, pyrococcus PSI-2, protein structure
initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm
3638}
Length = 373
Score = 42.4 bits (99), Expect = 1e-04
Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 13/126 (10%)
Query: 151 EKVAQHIASRCKASDVVIDGWYSVTPEKV---AQHIASRCKASDVVIDGFCGCGGNT--- 204
E+ + + R + D Y VTPE + +R + I G T
Sbjct: 132 EQFREIVKDRPEP-LHEFDQAY-VTPETTVARVILMHTRGDLENKDI-FVLGDDDLTSIA 188
Query: 205 IQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF-FALAPSLQG--DVVFL 261
+ + + +++ +DID + + A+ G I+ D L D
Sbjct: 189 LMLSGLPKRIAVLDIDERLTKFIEKAANEIGYED-IEIFTFDLRKPLPDYALHKFDTFIT 247
Query: 262 SPPWGG 267
PP
Sbjct: 248 DPPETL 253
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 1e-04
Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 58/181 (32%)
Query: 67 DVAYQETLNTLPSEFGSQRKKKRRRKKRSFELNYQEDLGDLENV-----PEEIWANPYLN 121
Y++ L+ F +F+ +D+ +++ + I + +
Sbjct: 15 QYQYKDILSVFEDAF-----------VDNFDCKDVQDM--PKSILSKEEIDHIIMSK--D 59
Query: 122 KYYQQRYLYWS----------RYDEGILMDEESWYSVTPEKVAQHIASRCKA-------- 163
L+W+ ++ E +L + + I + +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-------LMSPIKTEQRQPSMMTRMY 112
Query: 164 --------SDVVIDGWYSVT-PEKVAQ---HIASRCKASDVVIDGFCGCGGNTIQFAAVC 211
+D + Y+V+ + + + A +V+IDG G G T VC
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVC 171
Query: 212 Q 212
Sbjct: 172 L 172
Score = 32.9 bits (74), Expect = 0.15
Identities = 49/341 (14%), Positives = 89/341 (26%), Gaps = 114/341 (33%)
Query: 4 KKVLEDVAYQDILITYKLS------TLSGCAQ-KVLFNILEDVAYQ---------DILIT 47
K + + K+ L C + + +L+ + YQ D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 48 YKLSTLSGCAQ-KVLFN---------ILEDVAYQETLNTLPSEFGSQ-----RKKK---- 88
KL S A+ + L +L +V + N + R K+
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSCKILLTTRFKQVTDF 280
Query: 89 ---RRRKKRSFE-----LNYQEDLG--------DLENVPEE-----------IWA----N 117
S + L E +++P E I
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 118 PYLNKYYQQRYLYWSRYDEGILM--------DEESWY---SVTPEKVAQHIASRCKASDV 166
++ + I + + SV P HI + +
Sbjct: 341 LATWDNWKH-VNCD-KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--HI-----PTIL 391
Query: 167 VIDGWYSVTPEKVAQHIASRC-KASDVVIDGFCGCGGNTIQFAAVCQKVISI-DIDPAKL 224
+ W+ V V + ++ K S V + ISI I L
Sbjct: 392 LSLIWFDVIKSDV-MVVVNKLHKYSLVEKQP--------------KESTISIPSIY---L 433
Query: 225 RLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW 265
L + Y + H+ + D + + + D L PP+
Sbjct: 434 ELKVKLENEYAL-HR-SIV--DHYNIPKTFDSD--DLIPPY 468
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 41.7 bits (98), Expect = 1e-04
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 184 ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI 243
+ K ++ V+D G G FA +KV++ D+ L++A+ G ++++
Sbjct: 32 IAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ-VEYV 90
Query: 244 QGDFFAL 250
QGD +
Sbjct: 91 QGDAEQM 97
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 41.9 bits (98), Expect = 2e-04
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 198 CGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
CG G + + K ID L A+ + +F++GD +
Sbjct: 31 CGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI 84
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 41.0 bits (97), Expect = 2e-04
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG-DVVFL 261
+V+ ID D + A+ G+ +++ GD +A + D++F+
Sbjct: 83 RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFM 132
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 40.8 bits (96), Expect = 2e-04
Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 19/125 (15%)
Query: 150 PEKVAQHIASRCKASDVVIDGWYSVTPEKVA--QHIASRCKASDVV-IDGFCGCGGNTIQ 206
P+ V + I + C + ++ V K + S V+ + +CG ++
Sbjct: 22 PQSVLEAIDTYCTQKEWAMN----VGDAKGQIMDAVIREYSPSLVLELGAYCGYS--AVR 75
Query: 207 FAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG------- 256
A + Q ++++++I+P + Q + G+ K+ + G L P L+
Sbjct: 76 MARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135
Query: 257 DVVFL 261
D+VFL
Sbjct: 136 DMVFL 140
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 41.5 bits (97), Expect = 2e-04
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV 236
E + + + V+D G G T+ A + +V+ ++ D A + Q +
Sbjct: 221 EALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANAL 280
Query: 237 SHKIQFIQGDFF-ALAPSLQGDVVFLSPP 264
K Q + D AL + D++ +PP
Sbjct: 281 --KAQALHSDVDEALTEEARFDIIVTNPP 307
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 40.7 bits (95), Expect = 3e-04
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 9/93 (9%)
Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY 234
V + S VID CG G +++ +D+ + L A+ +
Sbjct: 19 GTVVAVLKSVNAKK--VIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID 76
Query: 235 GVSH----KIQFIQGDFFALAPSLQG-DVVFLS 262
+ +I Q G D +
Sbjct: 77 RLPEMQRKRISLFQSSLVYRDKRFSGYDAATVI 109
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 40.8 bits (95), Expect = 3e-04
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSH 238
+ +A ++VV+D F G G TI A + V +I+ +P N + +++
Sbjct: 111 KRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNN 170
Query: 239 KIQFIQGDFFALAPSLQGDVVFLSPP 264
I + + + V+
Sbjct: 171 VIPILADNRDVELKDVADRVIMGYVH 196
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel,
structural genomics, PSI-2 structure initiative; HET:
MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP:
c.66.1.51
Length = 332
Score = 40.9 bits (96), Expect = 3e-04
Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 13/135 (9%)
Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV 236
E + + + + V ++ F G ++ AA +V +D + A+ N + G+
Sbjct: 142 EWLKNAVETADRPLKV-LNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGL 200
Query: 237 SHK-IQFIQGDFFALAPSLQG-----DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRL 290
I++I D + D++ P P++ R + ++ +
Sbjct: 201 EQAPIRWICEDAMKFIQREERRGSTYDIILTDP----PKFGRGTHG--EVWQLFDHLPLM 254
Query: 291 FQVARGISPNVGYYL 305
+ R I L
Sbjct: 255 LDICREILSPKALGL 269
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 40.8 bits (95), Expect = 3e-04
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 7/102 (6%)
Query: 178 KVAQHIASRCKAS--DVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNAS 232
K A I + S D +++ G G T+ A + +V+S +I +LA N
Sbjct: 80 KDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK 139
Query: 233 VYGVSHKIQFIQGDFFALAPSLQGDVVFL--SPPWGGPEYAR 272
G ++ D + D V L P E+A
Sbjct: 140 WAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHAA 181
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 40.3 bits (95), Expect = 3e-04
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG----DVVFL 261
++SI+ D + A + G+ +I+ + GD L L+ DV+F+
Sbjct: 80 TIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 40.2 bits (94), Expect = 3e-04
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 247
K+ V++ G G T + + V I+ +A+ + +GDF
Sbjct: 44 KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKL-----PKEFSITEGDF 98
Query: 248 FALAPSLQGDVVFLS 262
+ D + +
Sbjct: 99 LSFEVPTSIDTIVST 113
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 39.8 bits (93), Expect = 4e-04
Identities = 17/116 (14%), Positives = 28/116 (24%), Gaps = 18/116 (15%)
Query: 183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQF 242
+ +V+D G T V+S D++ L +
Sbjct: 17 LEREGLEMKIVLDLGTSTGVITE-QLRKRNTVVSTDLNIRALESHRGG----------NL 65
Query: 243 IQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFS-------IDNIFPEQGGGRRLF 291
++ D DVV +PP+ ID G
Sbjct: 66 VRADLLCSINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAVTVGMLYL 121
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 40.8 bits (96), Expect = 4e-04
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 179 VAQHIASRCKASDV--VIDGFCGCGGNTIQFAAVCQ-----KVISIDIDPAKLRLAQHNA 231
Q + K V +ID G G+ AA+ + +++ P + L NA
Sbjct: 178 AIQLLLEEAKLDGVKKMID-VGGGIGDIS--AAMLKHFPELDSTILNL-PGAIDLVNENA 233
Query: 232 SVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262
+ GV+ +++ I D + + + D V
Sbjct: 234 AEKGVADRMRGIAVDIYKESYP-EADAVLFC 263
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 40.5 bits (95), Expect = 4e-04
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 247
+ + ++D CG G T + A +V+ D + A+ N + F D
Sbjct: 56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYP------HLHFDVADA 109
Query: 248 FALAPSLQGDVVF 260
D VF
Sbjct: 110 RNFRVDKPLDAVF 122
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 39.9 bits (93), Expect = 4e-04
Identities = 22/135 (16%), Positives = 37/135 (27%), Gaps = 14/135 (10%)
Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNAS-- 232
V + VID CG G +++ +D+ L +AQ
Sbjct: 19 NGVVAALKQSNARR--VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRL 76
Query: 233 --VYGVSHKIQFIQGDFFALAPSLQG-DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRR 289
++Q IQG G D + + +R +F
Sbjct: 77 RLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIV 136
Query: 290 LFQVARGISPNVGYY 304
+ PN+ Y
Sbjct: 137 IVTT-----PNIEYN 146
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 40.0 bits (93), Expect = 5e-04
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 171 WYSVTPEKVAQHIASRCKASD---VVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLA 227
W + V + + +ID CG G T + +VI +D+ + L +A
Sbjct: 35 WDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIA 94
Query: 228 QHNASVYGVSHKIQFIQGDFFALAPSLQGD 257
+ +S + D + Q
Sbjct: 95 AKENTAANIS----YRLLDGLVPEQAAQIH 120
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 40.5 bits (94), Expect = 5e-04
Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 21/127 (16%)
Query: 146 YSVTPEKVAQHIASRCKASDVVIDGWY---SVTPEKVAQHIASR--------CKASDVVI 194
Y T + A S CK + V + + ++V + V+
Sbjct: 29 YGKTLQSSADLKTSACKLAAAVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVL 88
Query: 195 DGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHK-------IQFIQ 244
D CG G + + + KVI +D+ +L +A+ + ++F++
Sbjct: 89 DLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLK 148
Query: 245 GDFFALA 251
G LA
Sbjct: 149 GFIENLA 155
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 40.0 bits (93), Expect = 5e-04
Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 26/112 (23%)
Query: 198 CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG- 256
CG G + +F + + D P L+LA+ NA + + P+ G
Sbjct: 57 CGHGPDAARFGPQAARWAAYDFSPELLKLARANAP------HADVYEWNGKGELPAGLGA 110
Query: 257 --DVVFLSPPWGGPEYARSSFSIDNIFPE-----QGGGRRLFQVARGISPNV 301
++ S ++ L+ R P V
Sbjct: 111 PFGLIV------------SRRGPTSVILRLPELAAPDAHFLYVGPRLNVPEV 150
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 39.8 bits (93), Expect = 6e-04
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 175 TPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNA 231
T EK A + K ++D G G +A ID+ A+ A
Sbjct: 21 TEEKYA-TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRA 79
Query: 232 SVYGVSHKIQFIQGDFFALAPSLQGDVV 259
GVS ++ FI D + + DV
Sbjct: 80 EELGVSERVHFIHNDAAGYVANEKCDVA 107
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 39.8 bits (93), Expect = 6e-04
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 193 VIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP 252
V+D CG G T++ A +V+ +D+ LR+A+ A + KI+F+QGD +A
Sbjct: 45 VLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF 102
Query: 253 SLQGDVVF 260
+ D V
Sbjct: 103 KNEFDAVT 110
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 40.1 bits (93), Expect = 6e-04
Identities = 27/161 (16%), Positives = 48/161 (29%), Gaps = 14/161 (8%)
Query: 183 IASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQ 241
I K D V+D CG GG+ +++ + +DI + A+ A K+
Sbjct: 58 IRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVF 117
Query: 242 FIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQ-VARGISPN 300
F D + + S FS F + +AR + P
Sbjct: 118 FRAQDSYGRHM----------DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG 167
Query: 301 --VGYYLPRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQDM 339
+P + E + F + +M +
Sbjct: 168 GYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMES 208
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 40.2 bits (93), Expect = 7e-04
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 7/93 (7%)
Query: 179 VAQHIASRCKASDVVIDGFCGCGGNTIQFAA---VCQKVISIDIDPAKLRLAQHNASVYG 235
+++ + V D G I+F +K + DI + + + N +
Sbjct: 42 GLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN 101
Query: 236 VSHKIQFIQGDFFAL----APSLQGDVVFLSPP 264
+ I G D V L P
Sbjct: 102 IPEDRYEIHGMEANFFLRKEWGFGFDYVDLDPF 134
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 39.8 bits (93), Expect = 7e-04
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 181 QHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS 237
+ I S + V+D G GG + IDI + +A +
Sbjct: 45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERV---SGN 101
Query: 238 HKIQFIQGDFFAL 250
+KI F D
Sbjct: 102 NKIIFEANDILTK 114
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 39.7 bits (93), Expect = 0.001
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 201 GGNTIQFA-AVCQ-----KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL 254
GGNT ++A Q +V +D+ P +L + + + S +I +
Sbjct: 187 GGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF 245
Query: 255 --QGDVVFLS 262
D V++S
Sbjct: 246 PTGFDAVWMS 255
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 39.2 bits (92), Expect = 0.001
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYAR 272
K++ D+ +A+ G+ +KI G AL +LQ + S P ++A
Sbjct: 87 KILCCDVSEEWTNVARKYWKENGLENKIFLKLGS--AL-ETLQVLIDSKSAPSWASDFAF 143
Query: 273 SSFSIDNIF 281
SID F
Sbjct: 144 GPSSIDLFF 152
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 39.0 bits (92), Expect = 0.001
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS-PP 264
++I++D P + LAQ NA + + I +Q D+F+ Q ++ +S PP
Sbjct: 135 EIIAVDRMPDAVSLAQRNAQHLAIKN-IHILQSDWFSALAGQQFAMI-VSNPP 185
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 38.9 bits (91), Expect = 0.001
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 169 DGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRL 226
+ + +AQ + V+D G I A ++ +D + L +
Sbjct: 145 SPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDW-ASVLEV 203
Query: 227 AQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262
A+ NA + GV+ + I G F + D+V L
Sbjct: 204 AKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLP 239
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 38.8 bits (90), Expect = 0.001
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 170 GWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRL 226
++A +AS V ++ G G + A + I++D D A L +
Sbjct: 17 AHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEV 76
Query: 227 AQHNASVYGVSHKIQFIQGDFFAL 250
+ + GV K+Q +Q D A+
Sbjct: 77 FRQKIA--GVDRKVQVVQADARAI 98
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 39.1 bits (91), Expect = 0.002
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVS--HKIQFI 243
++D CG G + KV+ +D P + ++ N + +F+
Sbjct: 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM 280
Query: 244 QGDFFALAPSLQGDVVFLSPP 264
+ + + + V +PP
Sbjct: 281 INNALSGVEPFRFNAVLCNPP 301
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 38.6 bits (90), Expect = 0.002
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 164 SDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAK 223
+DV W + + + D +D CG G T + ++D+
Sbjct: 16 ADVDYKKWS----DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEM 71
Query: 224 LRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVF 260
L A++ G+ K + D L + + D++
Sbjct: 72 LSEAENKFRSQGL--KPRLACQDISNLNINRKFDLIT 106
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 38.5 bits (90), Expect = 0.002
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD 257
K++++DI+ L GV HKI F +G + + D
Sbjct: 106 KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKD 150
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 38.4 bits (90), Expect = 0.002
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 191 DVVIDGFC-GCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
VID C G T AA+ + K+ + D+D +L + GVS + + D
Sbjct: 104 SHVID-ACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEED 161
Query: 247 FFALAPSLQG----DVVFLSPP 264
F A++PS + L P
Sbjct: 162 FLAVSPSDPRYHEVHYILLDPS 183
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 37.9 bits (88), Expect = 0.002
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 169 DGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 228
+ Y P +A++ + + G G N A++ +V ++D L A+
Sbjct: 10 EYVYGTEPNDFLVSVANQIPQGKI-LCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAK 68
Query: 229 HNASVYGVSHKIQFIQGDFFALAP 252
A GV I +Q +
Sbjct: 69 QLAQEKGVK--ITTVQSNLADFDI 90
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 38.0 bits (89), Expect = 0.002
Identities = 10/53 (18%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG----DVVFL 261
++++++ D ++A+ N + GV ++ +G SL D++F+
Sbjct: 90 QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 38.4 bits (88), Expect = 0.002
Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 2/147 (1%)
Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQF-AAVCQKVISIDIDPAKLRLAQHNASVYG 235
+ + + + K V+D CG GG+ +++ K++ DI ++ Q
Sbjct: 22 GEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMK 81
Query: 236 VSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP-EYARSSFSIDNIFPEQGGGRRLFQVA 294
++I F A S + ++ + F F + + A
Sbjct: 82 NRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNA 141
Query: 295 RGISPNVGYYLPRTSDVFEIFHDSGKK 321
GY++ T + FE+
Sbjct: 142 CERLSPGGYFIGTTPNSFELIRRLEAS 168
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 38.0 bits (89), Expect = 0.003
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSH 238
+ +A + D V+D G G + AA K + +DIDP L A+ NA GV
Sbjct: 112 KALARHLRPGDKVLD--LGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRP 169
Query: 239 KIQFIQGDFFALAPSLQGDVVF 260
+F++G A P D++
Sbjct: 170 --RFLEGSLEAALPFGPFDLLV 189
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 38.1 bits (88), Expect = 0.003
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 15/97 (15%)
Query: 175 TPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVIS---IDIDPAKLRLAQH 229
TP +V + S V++ C G F ++IDP L L
Sbjct: 23 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW 82
Query: 230 NASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 266
+ I DF P D++ +PP+G
Sbjct: 83 A----------EGILADFLLWEPGEAFDLILGNPPYG 109
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 37.8 bits (87), Expect = 0.003
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 199 GCGGNTIQFAAVCQ----KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG-------DF 247
G G + I ++ ++D A+ N +S I+ ++ D
Sbjct: 73 GTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDA 132
Query: 248 FALAPSLQGDVVFLSPPWGGPE 269
+ D +PP+ +
Sbjct: 133 LKEESEIIYDFCMCNPPFFANQ 154
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 37.6 bits (88), Expect = 0.003
Identities = 4/34 (11%), Positives = 16/34 (47%)
Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
+V++++ +A+ N ++ +++ G
Sbjct: 85 RVVTLEASEKHADIARSNIERANLNDRVEVRTGL 118
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 37.6 bits (86), Expect = 0.004
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 2/85 (2%)
Query: 193 VIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
V+D C G T+ A +++ +DID + A+ N Y Q
Sbjct: 50 VLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDP 109
Query: 251 APSLQGDVVFLSPPWGGPEYARSSF 275
+ + P +S
Sbjct: 110 GAEGEEGTTTVRKRSCFPASLTASR 134
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 37.6 bits (88), Expect = 0.004
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 174 VTPEKVAQHIASRCKASD-VVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLA 227
+TP + V+ G G G IQ +VI++D+D +L LA
Sbjct: 156 LTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALA 212
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 37.0 bits (86), Expect = 0.004
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 244
K V+D G G + + KV +ID+ + A + G+ + ++ ++
Sbjct: 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN-VEVLK 94
Query: 245 GDFFALA-PSLQGDVVFLS 262
+ + P D +F++
Sbjct: 95 SEENKIPLPDNTVDFIFMA 113
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA
modification enzyme, guanine 26, N(2),N(2)-dimethyltran
structural genomics; 1.90A {Pyrococcus horikoshii} SCOP:
c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Length = 378
Score = 37.5 bits (86), Expect = 0.004
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 183 IASRCKASDVVIDGFCGCGGNTIQFA--AVCQKVISIDIDPAKLRLAQHNASVYGVSHKI 240
+ +V+D G I+FA ++V DI L + N +
Sbjct: 41 VLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELR 100
Query: 241 QFIQGDFFA 249
+
Sbjct: 101 ESKGRAILK 109
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 37.3 bits (87), Expect = 0.004
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG--------DVVFL 261
K+ +ID D + GV HKI FI+ D +L D F+
Sbjct: 97 KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFV 153
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 36.6 bits (85), Expect = 0.005
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 14/89 (15%)
Query: 176 PEKVAQHIASRCKASDVVID-GFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS-V 233
PE+ +I V++D G CG G K+ IDI+ L+ + V
Sbjct: 6 PEEYLPNIFE--GKKGVIVDYG-CGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSV 62
Query: 234 YGVSHKIQFIQGDFFALAPSLQGDVVFLS 262
+S + D + +
Sbjct: 63 ITLSDPKEIPDNSV---------DFILFA 82
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 36.9 bits (86), Expect = 0.005
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
+I+ D+D LA+ G+S KI
Sbjct: 91 TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSP 124
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 37.6 bits (88), Expect = 0.005
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 169 DGWYSVTPEKVAQHIAS--RCKASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAK 223
+G V E + + K + V+D GG T A + + K+ + D+D +
Sbjct: 238 EGKIIVQEEA-SAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMR 296
Query: 224 LRLAQHNASVYGVSHKIQFIQGD 246
++ + G+ ++ + D
Sbjct: 297 MKRLKDFVKRMGI-KIVKPLVKD 318
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 36.9 bits (86), Expect = 0.005
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
++I+ D DP +A+ GV+ KI G
Sbjct: 99 QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGP 132
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 37.3 bits (87), Expect = 0.006
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 174 VTPEKVAQHIASRCKASD-VVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLA 227
+T + + A V I G G G +Q V VI++D+ KL+LA
Sbjct: 171 ITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLA 227
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 36.6 bits (85), Expect = 0.007
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV 236
+ + + + + D CG G T+ A + V +D+ L +AQ A
Sbjct: 21 PEWVAWVLEQVEPGKRIADIGCGTGTATLLLADHYE-VTGVDLSEEMLEIAQEKAMETNR 79
Query: 237 SHKIQFIQGDFFALAPSLQGDVVFL 261
+ F D L D + +
Sbjct: 80 --HVDFWVQDMRELELPEPVDAITI 102
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 37.0 bits (86), Expect = 0.007
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 9/70 (12%)
Query: 201 GGNTIQFA-AVCQ-----KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA--LAP 252
G + V + D+ P A+ + + +++F + +
Sbjct: 187 AGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE 245
Query: 253 SLQGDVVFLS 262
DVV L+
Sbjct: 246 GGAADVVMLN 255
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 36.5 bits (85), Expect = 0.007
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG-------DVVFL 261
+VI+ DI+ + A HKI+ G SL D +F+
Sbjct: 87 QVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFI 142
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 36.8 bits (85), Expect = 0.007
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 198 CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYG--VSHKIQFIQGDFFALAPSLQ 255
G G T F + +V ++++ + L + + V + +QGD A A +
Sbjct: 91 AGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKR 150
Query: 256 GDVVFL 261
V +
Sbjct: 151 FGTVVI 156
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 35.9 bits (83), Expect = 0.008
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 19/99 (19%)
Query: 198 CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG- 256
CG G + V+ D+DP + A+ + + +++ GD S
Sbjct: 55 CGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP------EARWVVGDLSVDQISETDF 108
Query: 257 DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVAR 295
D++ S+ ++ E G L + R
Sbjct: 109 DLIV------------SAGNVMGFLAEDGREPALANIHR 135
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 35.9 bits (83), Expect = 0.009
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 198 CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
G G T A++ ++ ++ + LA+ + F G L
Sbjct: 50 SGTGRWTGHLASLGHQIEGLEPATRLVELARQTHP------SVTFHHGTITDL 96
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 35.9 bits (83), Expect = 0.010
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 198 CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD 257
CG G A + + +D D + A+ + G H + Q + D
Sbjct: 61 CGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGA--GEVHLASYAQLAEAKVPVGKDYD 118
Query: 258 VVF 260
++
Sbjct: 119 LIC 121
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 36.2 bits (84), Expect = 0.010
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 179 VAQHI--ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV 236
+ I + + +DVV++ G G T++ +KV++ ++DP + V
Sbjct: 16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPV 75
Query: 237 SHKIQFIQGDF 247
+ K+Q + GD
Sbjct: 76 ASKLQVLVGDV 86
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET:
SAM; 2.00A {Escherichia coli}
Length = 200
Score = 35.6 bits (81), Expect = 0.011
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKV--ISIDIDPAKLRLAQHNASVY 234
++ K ++D CG + +K+ + DID A++
Sbjct: 37 NDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKL 96
Query: 235 GVSHKIQFIQGDFFALAPSLQGDVVFL 261
+ K +F + + DVVFL
Sbjct: 97 KTTIKYRF--LNKESDVYKGTYDVVFL 121
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 36.0 bits (83), Expect = 0.011
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 9/99 (9%)
Query: 165 DVVIDGW---YSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP 221
D+V G Y +A + + ++D CG G + A V +++
Sbjct: 23 DLVHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSA 82
Query: 222 AKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVF 260
L +A+ GD + + V
Sbjct: 83 DMLAIARRRN------PDAVLHHGDMRDFSLGRRFSAVT 115
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 35.9 bits (83), Expect = 0.011
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 6/82 (7%)
Query: 179 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH 238
+A + SR + ++D CG G + F +++ L A+
Sbjct: 30 IADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLP------ 83
Query: 239 KIQFIQGDFFALAPSLQGDVVF 260
QGD + V
Sbjct: 84 DATLHQGDMRDFRLGRKFSAVV 105
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 35.8 bits (83), Expect = 0.013
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 7/56 (12%)
Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG-------DVVFL 261
+V++ ++D L + HKI L DV +
Sbjct: 96 RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVV 151
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 35.2 bits (82), Expect = 0.014
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 193 VIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 249
V+D F G GG + AV + ++ + + Q N + ++ ++ +
Sbjct: 35 VLDLFAGSGG--LAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER 92
Query: 250 LAPSLQG--DVVFLSPPWG 266
L G D+VFL PP+
Sbjct: 93 AIDCLTGRFDLVFLDPPYA 111
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 35.5 bits (82), Expect = 0.016
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYG 235
V+ IAS + ++D G G + +D+ L +A++
Sbjct: 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN- 91
Query: 236 VSHKIQFIQGDFFALAPSLQGDVVFLS 262
K+++I+ D+ + D+V +
Sbjct: 92 --LKVKYIEADYSKYDFEEKYDMVVSA 116
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 35.2 bits (82), Expect = 0.016
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 249
V ++D+ L +A+ NA +G + + D
Sbjct: 56 SVTAVDLSMDALAVARRNAERFGAV--VDWAAADGIE 90
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 35.6 bits (82), Expect = 0.017
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 10/76 (13%)
Query: 188 KASDVVID-GFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 244
+ D G CG G +T + ID D L A F +
Sbjct: 32 ERVLNGYDLG-CGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLP------NTNFGK 84
Query: 245 GDFFALAPSLQGDVVF 260
D P+ + D+++
Sbjct: 85 ADLATWKPAQKADLLY 100
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 35.7 bits (83), Expect = 0.018
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 15/92 (16%)
Query: 179 VAQHIASRCKA---SDVVIDGFCGC-GGNTIQFAAV--CQKVISIDIDPAKLRLAQHNAS 232
V H + +V+I G G G IQ A + V +IDI KL LA+
Sbjct: 148 VGLHAFHLAQGCENKNVIIIG-AGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS--- 203
Query: 233 VYGVSHKIQFIQGDFFALAPSLQG----DVVF 260
+G + + L+ ++
Sbjct: 204 -FGAMQTFNSSEMSAPQMQSVLRELRFNQLIL 234
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 35.6 bits (83), Expect = 0.019
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 17/94 (18%)
Query: 179 VAQHIASRCKA---SDVVIDGFCGCGGN-TIQFAAV--CQKVISIDIDPAKLRLAQHNAS 232
V H R V++ G G G T+ A +V+ D+ +L A+
Sbjct: 159 VGIHACRRGGVTLGHKVLVCG-AGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE--- 214
Query: 233 VYGVSHKIQFIQGDFFALAPSLQG------DVVF 260
G +Q + +A ++G +V
Sbjct: 215 -IGADLVLQISKESPQEIARKVEGQLGCKPEVTI 247
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 35.2 bits (80), Expect = 0.021
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 9/101 (8%)
Query: 186 RCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRL----AQHNASVYGVSHK 239
+ V ID G G N + A I ID L S G+S+
Sbjct: 21 IGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN- 79
Query: 240 IQFIQGDFFALAPSLQG--DVVFLSPPWGGPEYARSSFSID 278
+ F+ +L L+ D + + PWG + D
Sbjct: 80 VVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRD 120
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 35.4 bits (81), Expect = 0.021
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 176 PEKVAQHIASRC-KASDVVIDGFCGCGGNTIQFA---AVCQKVISIDIDPAKLRLAQHNA 231
P + I +++D CG G T+Q A +++I D+ ++ A+
Sbjct: 22 PSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIK 81
Query: 232 SVYGVSHK-IQFIQGDF 247
++K + F
Sbjct: 82 EGSPDTYKNVSFKISSS 98
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic
resistance, methyltransferase, transferase; HET: SAM;
2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Length = 281
Score = 34.4 bits (78), Expect = 0.035
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 4/87 (4%)
Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKV--ISIDIDPAKLRLAQHNASVY 234
++ + + + + D CG + + + I+ DID + +
Sbjct: 120 DEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL 179
Query: 235 GVSHKIQFIQGDFFALAPSLQGDVVFL 261
V H+ D DV L
Sbjct: 180 NVPHR--TNVADLLEDRLDEPADVTLL 204
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes}
SCOP: c.66.1.45
Length = 344
Score = 34.7 bits (80), Expect = 0.036
Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 19/108 (17%)
Query: 175 TPEKVAQHIA------SRCKASDVVIDGFCGCGGNTIQFAAVCQKVIS-------IDIDP 221
TP+ + +A + K + ++D CG + +D+D
Sbjct: 110 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDD 169
Query: 222 AKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG--DVVFLSPPWGG 267
+ LA A + K+ + D LA L DVV P G
Sbjct: 170 LLISLALVGADLQRQ--KMTLLHQD--GLANLLVDPVDVVISDLPVGY 213
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 34.4 bits (79), Expect = 0.039
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 171 WYSVTPEKVAQHI------ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKL 224
W V+ + + + + + D ++D CG G +++ A+ V IDI+ +
Sbjct: 6 WEKVSGKNIPSSLDLYPIIHNYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAI 65
Query: 225 RLAQHNASVYGVSH----KIQFIQGD 246
RLA+ A G++ K +F +
Sbjct: 66 RLAETAARSPGLNQKTGGKAEFKVEN 91
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 34.4 bits (80), Expect = 0.049
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 199 GCGG---NTIQFAAV--CQKVISIDIDPAKLRLA 227
G G + + A V +I++DI ++L LA
Sbjct: 198 GAGAVGLSALLAAKVCGASIIIAVDIVESRLELA 231
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 34.1 bits (78), Expect = 0.052
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 15/110 (13%)
Query: 170 GWYSVTPEKVAQHIASRCKASD-VVIDGFCGCGGNTIQFAAVCQK--VISIDIDPAKLRL 226
G Y + + + R V+D CG G T FA + +D+ ++
Sbjct: 65 GHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKA 124
Query: 227 AQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFLSPPWGGPEYAR 272
A ++ F L P S+ + +P E AR
Sbjct: 125 AAKRYP------QVTFCVASSHRL-PFSDTSMDAIIRIYAPCK-AEELAR 166
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 33.9 bits (77), Expect = 0.056
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 186 RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG 245
R +D GG T Q V S+D P +AQ V+ ++
Sbjct: 208 RLANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP----MAQSLMDTGQVTW----LRE 259
Query: 246 DFFALAP 252
D F P
Sbjct: 260 DGFKFRP 266
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.056
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 17/65 (26%)
Query: 66 EDVAYQETLNTLPSEFGSQRKKKRRRKKRSFELNYQEDLGDLENVPEEIW---ANPYLNK 122
D QE E S RK + ++KR ++L V E+ W A L +
Sbjct: 77 ADRLTQE------PE--SIRKWREEQRKR------LQELDAASKVMEQEWREKAKKDLEE 122
Query: 123 YYQQR 127
+ Q++
Sbjct: 123 WNQRQ 127
Score = 27.0 bits (59), Expect = 7.8
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 26/83 (31%)
Query: 111 PEEI--WANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVI 168
PE I W +QR R E +D S + + Q + K +
Sbjct: 84 PESIRKWRE-------EQR----KRLQE---LDAAS------KVMEQEWREKAKKD---L 120
Query: 169 DGWYSVTPEKVAQHIASRCKASD 191
+ W E+V ++ + + +D
Sbjct: 121 EEWNQRQSEQVEKNKINN-RIAD 142
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 34.1 bits (79), Expect = 0.057
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 192 VVIDGFCGCGGNTIQFA-AVCQ--KVISIDIDPAKLRLA 227
V+++G G TIQ A+ + ++ I A
Sbjct: 174 VIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFA 212
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 33.8 bits (77), Expect = 0.058
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 193 VIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 247
V+D CG G ++I V S+D L+ A + F +
Sbjct: 61 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRR--KEPAFDKWVI 113
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 33.3 bits (77), Expect = 0.061
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVS 237
I V D G G + AA + V++ DI + A+ NA++ G+
Sbjct: 52 LGIERAMVKPLTVAD--VGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY 109
Query: 238 HKIQFIQGDFFALAPSLQGDVVF 260
I + A + D++
Sbjct: 110 D-IALQKTSLLA-DVDGKFDLIV 130
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 33.9 bits (78), Expect = 0.065
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG 245
V+D CG G ++ FA ++ D+ + ++ + GV + +
Sbjct: 195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV--EGEVFAS 252
Query: 246 DFFALAPSLQGDVVFLSPP 264
+ F+ + D++ +PP
Sbjct: 253 NVFSEVKG-RFDMIISNPP 270
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 33.7 bits (78), Expect = 0.066
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 190 SDVVIDGFCGC-GGNTIQFAAVC--QKVISIDIDPAKLRLA 227
VVI G G G + A + VI I P +L+LA
Sbjct: 197 KTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLA 236
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 33.5 bits (76), Expect = 0.086
Identities = 21/134 (15%), Positives = 39/134 (29%), Gaps = 18/134 (13%)
Query: 171 WYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDID------P 221
T ++A A + K + +++ CG G + A V IDI P
Sbjct: 25 QRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAP 84
Query: 222 AKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIF 281
L A ++ + ++ + D F + + S+ F
Sbjct: 85 LTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHF--------DRVVLAHSLWY-F 135
Query: 282 PEQGGGRRLFQVAR 295
LF+
Sbjct: 136 ASANALALLFKNMA 149
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 33.4 bits (77), Expect = 0.093
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 179 VAQHIASRCKASDV--VIDGFCGCGGNTIQFAAVCQ-----KVISIDIDPAKLRLAQHNA 231
IA++ + + V+D G G + +A+ +D+ A
Sbjct: 157 DYTGIAAKYDWAALGHVVD-VGGGSGGLL--SALLTAHEDLSGTVLDL-QGPASAAHRRF 212
Query: 232 SVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262
G+S + Q + G FF P+ LS
Sbjct: 213 LDTGLSGRAQVVVGSFFDPLPA-GAGGYVLS 242
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 33.0 bits (76), Expect = 0.096
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 198 CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
G G T A + KV+S++I+ A S Y + I+ I GD
Sbjct: 79 TGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYY---NNIKLILGD 124
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in E spine; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 33.5 bits (77), Expect = 0.097
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 179 VAQHIASRCKASDV--VIDGFCGCGGNTIQFAAVCQ-----KVISIDIDPAKLRLAQHNA 231
+ A S V V+D G G + AA+ + +++ A+
Sbjct: 170 AYEAPADAYDWSAVRHVLD-VGGGNGGML--AAIALRAPHLRGTLVEL-AGPAERARRRF 225
Query: 232 SVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262
+ G++ ++ +GDFF P DVV LS
Sbjct: 226 ADAGLADRVTVAEGDFFKPLPV-TADVVLLS 255
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 32.9 bits (75), Expect = 0.10
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 10/52 (19%)
Query: 199 GCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
G G T +FA + I ++ +A+ + ++G L
Sbjct: 55 GVG--TGRFAVPLKIKIGVEPSERMAEIARKRG--------VFVLKGTAENL 96
>1ws6_A Methyltransferase; structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.50A {Thermus
thermophilus} SCOP: c.66.1.46
Length = 171
Score = 32.5 bits (75), Expect = 0.11
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 193 VIDGFCGCGGNTIQFA---AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 249
+D F G G ++ A + + ++ DP +RL + N G+ ++ + + F
Sbjct: 45 FLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFL 101
Query: 250 LAPSLQG---DVVFLSPPWG 266
QG V F++PP+
Sbjct: 102 PEAKAQGERFTVAFMAPPYA 121
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 32.5 bits (74), Expect = 0.12
Identities = 12/65 (18%), Positives = 14/65 (21%), Gaps = 7/65 (10%)
Query: 198 CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD 257
CG G A V + D P A F L D
Sbjct: 52 CGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLDAIDAYD 104
Query: 258 VVFLS 262
V+
Sbjct: 105 AVWAH 109
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 33.0 bits (76), Expect = 0.13
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 190 SDVVIDGFCGCGGNT-IQFA-AVC-QKVISIDIDPAKLRLA 227
+++ G G G +Q A AV +I +D+ + A
Sbjct: 172 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA 212
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 32.9 bits (74), Expect = 0.14
Identities = 19/149 (12%), Positives = 37/149 (24%), Gaps = 29/149 (19%)
Query: 150 PEKVAQHIASRCKASDVVID--------GW----YSVTPEKVAQHIASRCK--ASDVVID 195
P + + Y + +C+ D +D
Sbjct: 189 PRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMD 248
Query: 196 GFCGCGGNTIQFAAV--CQKVISIDIDPAKLRL-------AQHNASVYGVSH-KIQFIQG 245
G G +Q A C +I L + +YG+ ++F
Sbjct: 249 LGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 308
Query: 246 DFFALAPSL-----QGDVVFLSPPWGGPE 269
F + Q DV+ ++ +
Sbjct: 309 KSFVDNNRVAELIPQCDVILVNNFLFDED 337
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 32.7 bits (75), Expect = 0.15
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 179 VAQHIASRCKASDV--VIDGFCGCGGNTIQFAAVCQ-----KVISIDIDPAKLRLAQHNA 231
A+ ++V V+D G G AA+ + +++ + A+
Sbjct: 171 AFDAPAAAYDWTNVRHVLD-VGGGKGGFA--AAIARRAPHVSATVLEM-AGTVDTARSYL 226
Query: 232 SVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262
G+S ++ ++GDFF P + D + LS
Sbjct: 227 KDEGLSDRVDVVEGDFFEPLPR-KADAIILS 256
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 32.6 bits (75), Expect = 0.15
Identities = 23/94 (24%), Positives = 28/94 (29%), Gaps = 17/94 (18%)
Query: 179 VAQHIASRCKA---SDVVIDGFCGCGGN-TIQFAAV--CQKVISIDIDPAKLRLAQHNAS 232
H S V I G G G T+Q A + VI K RLA+
Sbjct: 170 CCLHGVDLSGIKAGSTVAILG-GGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE--- 225
Query: 233 VYGVSHKIQFIQGDFFALAPSLQG------DVVF 260
G + + GD G DVV
Sbjct: 226 -VGATATVDPSAGDVVEAIAGPVGLVPGGVDVVI 258
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; HET: MSE;
1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Length = 187
Score = 32.1 bits (74), Expect = 0.16
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 193 VIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 249
+D + G GG I+ AV K I I+ + A L++ + N ++ K + + D
Sbjct: 48 ALDLYSGSGGLAIE--AVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR 105
Query: 250 LAPSLQG-----DVVFLSPP 264
D+V L PP
Sbjct: 106 ALEQFYEEKLQFDLVLLDPP 125
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A*
3iaf_A* 3d7k_A*
Length = 563
Score = 32.9 bits (76), Expect = 0.17
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 202 GNTIQFAAVCQKVISIDIDPA 222
+ Q +VI +D D
Sbjct: 286 HGSGQLIPHSAQVIQVDPDAC 306
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 32.5 bits (75), Expect = 0.20
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 169 DGWYSVTPEKVAQHIAS-------RCKASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDI 219
DGW +V Q ++ + + ++D GG T V +V+++DI
Sbjct: 225 DGWVTV------QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDI 278
Query: 220 DPAKLRLAQHNASVYGVSHKIQFIQGD 246
D +L N G+ QGD
Sbjct: 279 DEQRLSRVYDNLKRLGMK--ATVKQGD 303
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding,
RNA methylase, RSMD, SAM-fold, RNA methyltransferase;
1.90A {Mycobacterium tuberculosis}
Length = 189
Score = 31.7 bits (73), Expect = 0.22
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 193 VIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 249
V+D + G G + A+ V+ ++ D + N G+S +G A
Sbjct: 48 VLDLYAGSGA--LGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGA-TLRRGAVAA 104
Query: 250 LAPSLQG---DVVFLSPPWG 266
+ + D+V PP+
Sbjct: 105 VVAAGTTSPVDLVLADPPYN 124
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 31.4 bits (72), Expect = 0.26
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 198 CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
G G T A + Q V S++ A+ + H + GD
Sbjct: 86 TGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDL-HNVSTRHGD 133
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif,
gamma-N6M-adenosine methyltrans S-adenosyl-methionine
binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Length = 878
Score = 32.2 bits (72), Expect = 0.27
Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 22/114 (19%)
Query: 175 TPEKVAQHIAS--------RCKASDVVIDGFCGCGGNTIQFAA-----VCQKVISIDIDP 221
T ++ + ++ +V+ D G G +A + +++ + DI+
Sbjct: 299 TDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIET 358
Query: 222 AKLRLAQHNASVYG--VSHKI---QFIQGDFFALAPSLQG--DVVFLS-PPWGG 267
L L + + D +L P VV + PP+
Sbjct: 359 LFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVSVV-VMNPPYVS 411
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 31.5 bits (72), Expect = 0.30
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 213 KVISIDIDPAKLRLAQHNASVYGV-SHKIQFIQGDFFALAPSLQG---DVVFL 261
+ ID + R A+ G +++F+ + L +VF
Sbjct: 83 TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 31.7 bits (71), Expect = 0.33
Identities = 18/153 (11%), Positives = 44/153 (28%), Gaps = 4/153 (2%)
Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYG 235
V+ G G + ++ +++ D D + +
Sbjct: 36 SMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLN 95
Query: 236 VSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSS--FSIDNIFPEQGGGRRLFQV 293
K ++ + D+ V + + ++ F+I F + + +
Sbjct: 96 SGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNL 155
Query: 294 ARGISPNVGYYLPRTSDVFEIFHDSGKKGSFIS 326
+ + G L T D ++ + KK I
Sbjct: 156 SELTASG-GKVLITTMDGDKLSKLTDKKTFIIH 187
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase
fold, protein-cofactor product complex, structural
genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima}
SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Length = 301
Score = 31.3 bits (72), Expect = 0.34
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 192 VVIDGFCGCGGNTIQFAAVCQK-----VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
+++D G GG++ A+ + +I ID+D LR+A+ + ++ +
Sbjct: 29 IILDCTVGEGGHS---RAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVS 83
Query: 247 FFALAPSLQ 255
+ L+
Sbjct: 84 YREADFLLK 92
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 31.6 bits (72), Expect = 0.37
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 179 VAQHIASRCKASDV--VIDGFCGCGGNTIQFAAVCQ-----KVISIDIDPAKLRLAQHNA 231
A +A+ S +D G G+ + AAV + ++ P A+
Sbjct: 190 EAGQVAAAYDFSGAATAVD-IGGGRGSLM--AAVLDAFPGLRGTLLER-PPVAEEARELL 245
Query: 232 SVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262
+ G++ + + + GDFF P DV +
Sbjct: 246 TGRGLADRCEILPGDFFETIPD-GADVYLIK 275
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate,
flavoprotein, lyase, thiamine pyrophosphate; HET: TZD
ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3
c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A*
2jib_A*
Length = 568
Score = 31.7 bits (73), Expect = 0.37
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 201 GGNTIQFAAVCQKVISIDIDPA 222
G + +K + IDI
Sbjct: 289 HGKGKTWGDELKKYVQIDIQAN 310
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 31.4 bits (71), Expect = 0.38
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYG 235
E + H+ + D ++D CG GG+ + +V + + A+ A
Sbjct: 106 EFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELR 164
Query: 236 VSHKIQFIQGDF 247
+ ++ +
Sbjct: 165 IDDHVRSRVCNM 176
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 31.4 bits (72), Expect = 0.41
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 190 SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLA 227
S + G G G I V ++I +DI+ K A
Sbjct: 192 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARA 231
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A
{Entamoeba histolytica}
Length = 327
Score = 31.3 bits (71), Expect = 0.41
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 15/80 (18%)
Query: 193 VIDGFCGCGGNTIQFAAVCQK----VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF 248
VI+ F G GG + I DI+ ++ N K + +
Sbjct: 13 VIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKN-------FKEEVQVKNLD 65
Query: 249 ALA----PSLQGDVVFLSPP 264
+++ SL + F+SPP
Sbjct: 66 SISIKQIESLNCNTWFMSPP 85
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 31.0 bits (71), Expect = 0.47
Identities = 17/91 (18%), Positives = 24/91 (26%), Gaps = 14/91 (15%)
Query: 179 VAQHIASR--CKASDVVIDGFCGC-GGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASV 233
A V+I G G G I A VI + + LA+
Sbjct: 156 NAVDTVLAGPISGKSVLITG-AGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK---- 210
Query: 234 YGVSHKIQFIQGDFFALAPSLQG----DVVF 260
G + I + D + DV
Sbjct: 211 VGADYVINPFEEDVVKEVMDITDGNGVDVFL 241
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 31.0 bits (70), Expect = 0.49
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 5/65 (7%)
Query: 198 CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD 257
G T + + ++ + AQ I +I F + D
Sbjct: 51 SFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQLPRRYD 105
Query: 258 VVFLS 262
+ L+
Sbjct: 106 NIVLT 110
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 31.1 bits (71), Expect = 0.52
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 190 SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQ 228
S + G G + +++I++D++P K A+
Sbjct: 194 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK 234
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 31.0 bits (71), Expect = 0.55
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQ 228
S + G G G + I ++I + K A
Sbjct: 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI 233
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase
homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP:
c.66.1.26
Length = 343
Score = 30.9 bits (70), Expect = 0.61
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 193 VIDGFCGCGGNTIQF--AAVCQKVI-SIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 249
V++ + G GG + + +V+ +ID++ + ++N + Q +
Sbjct: 5 VLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN---FP---HTQLLAKTIEG 58
Query: 250 LA----PSLQGDVVFLSPP 264
+ L D++ +SPP
Sbjct: 59 ITLEEFDRLSFDMILMSPP 77
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 30.5 bits (68), Expect = 0.64
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 152 KVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKA 189
+A ++A I YS T E A+ +A + +A
Sbjct: 20 NLATNLAKALYRKGFRIVQVYSRTEES-ARELAQKVEA 56
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 30.6 bits (70), Expect = 0.64
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 192 VVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLA-QHNASVYGVSHK 239
VVI G G G +Q+A +V ++DID AKL LA + A V +
Sbjct: 170 VVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARD 219
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 30.3 bits (69), Expect = 0.80
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLA 227
S + G G + I + ++I+IDI+ K A
Sbjct: 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKA 236
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 30.6 bits (70), Expect = 0.80
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLA 227
+ S + G G G + I ++I +DI+ K A
Sbjct: 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA 232
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 29.8 bits (68), Expect = 0.82
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 193 VIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 249
+D F G G + A+ I++D A + N + + + + +
Sbjct: 58 CLDCFAGSGA--LGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMS 114
Query: 250 LAPSLQG--DVVFLSPPWG 266
++VF+ PP+
Sbjct: 115 FLAQKGTPHNIVFVDPPFR 133
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA
methylation, S- adenosylmethionine, PSI, protein
structure initiative; HET: SAM; 1.74A {Moraxella bovis}
SCOP: c.66.1.11
Length = 260
Score = 30.0 bits (68), Expect = 0.85
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 176 PEKVAQ-HIASRCKASDVVIDGFCGCGGNTIQFAAVCQK----VISIDIDP-----AKLR 225
P + + I + +D+V+D F G G A V +K I D++ A
Sbjct: 198 PRDLIERIIRASSNPNDLVLDCFMGSG----TTAIVAKKLGRNFIGCDMNAEYVNQANFV 253
Query: 226 LAQ 228
L Q
Sbjct: 254 LNQ 256
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 30.3 bits (69), Expect = 0.93
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 226 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262
+A+H V+ + + ++GDF P DV L
Sbjct: 220 VARHRLDAPDVAGRWKVVEGDFLREVPH--ADVHVLK 254
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 30.0 bits (68), Expect = 1.0
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 177 EKVAQHI--ASRCKASDVVIDGFCGCG-GN-TIQFAAVCQKVISIDIDPAKLRLAQ--HN 230
+ I A++ K+SD+V++ GCG GN T++ + +KVI+IDID R+
Sbjct: 28 PGILDKIIYAAKIKSSDIVLE--IGCGTGNLTVKLLPLAKKVITIDIDS---RMISEVKK 82
Query: 231 ASVYGVSHKIQFIQGDF 247
+Y + ++ +GD
Sbjct: 83 RCLYEGYNNLEVYEGDA 99
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 29.9 bits (67), Expect = 1.2
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
V+ D G GG ++ A V +++ + A + V ++ G
Sbjct: 33 PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQV-------EWFTGY 84
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 29.9 bits (68), Expect = 1.2
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 11/57 (19%)
Query: 179 VAQHIASRCKA---SDVVIDGFCGCG--GN-TIQFAAV--CQKVISIDIDPAKLRLA 227
VA R V+I CG G G T+ A ++ DID +L+ A
Sbjct: 167 VALAGLQRAGVRLGDPVLI---CGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFA 220
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 29.5 bits (67), Expect = 1.6
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 18/95 (18%)
Query: 179 VAQHIASRCKA---SDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASV 233
V H R + V++ G G G AA V+ P +L +A++
Sbjct: 156 VGVHACRRAGVQLGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN---- 210
Query: 234 YGVSHKIQF--IQGDFFALAPSLQG------DVVF 260
G + + + ++ ++ +V
Sbjct: 211 CGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTI 245
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 29.0 bits (66), Expect = 1.7
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 18/64 (28%)
Query: 188 KASDVVIDGFCGC--GGNTIQFAA-VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 244
+ D VI+ G GG T Q + +K+ISID+ + + GV +FI+
Sbjct: 24 RKGDAVIE--IGSSPGGWT-QVLNSLARKIISIDLQEME--------EIAGV----RFIR 68
Query: 245 GDFF 248
D F
Sbjct: 69 CDIF 72
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 29.4 bits (67), Expect = 1.8
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 192 VVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLA-QHNASVYGVSHK 239
V I G G G +Q+A V+++DI KL LA + A + K
Sbjct: 168 VAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLK 217
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 29.1 bits (66), Expect = 2.0
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 15/60 (25%)
Query: 179 VAQHIASRCKA---SDVVIDGFCGCG--GNTIQFAAVCQ-----KVISIDIDPAKLRLAQ 228
A H V+I G G G + A V + ++ D +P +L A+
Sbjct: 152 NAVHTVYAGSGVSGKSVLI---TGAGPIG--LMAAMVVRASGAGPILVSDPNPYRLAFAR 206
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics,
PSI-2, protein structure initiative; 2.30A {Haemophilus
influenzae} SCOP: c.66.1.46
Length = 201
Score = 28.7 bits (65), Expect = 2.0
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 193 VIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFF 248
+DGF G G + F A+ +KV +++D + N S + + I
Sbjct: 57 CLDGFAGSGS--LGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSL 114
Query: 249 ALAPSLQG----DVVFLSPPWG 266
Q DVVFL PP+
Sbjct: 115 DFLKQPQNQPHFDVVFLDPPFH 136
>1dct_A Protein (modification methylase HAEIII); enzyme, cytosine
methylase, transferase/DNA complex; HET: DNA C49 5CM;
2.80A {Haemophilus influenzae biotypeaegyptius} SCOP:
c.66.1.26
Length = 324
Score = 29.3 bits (66), Expect = 2.0
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 193 VIDGFCGCGGNTIQF-AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
+I F G GG + F A + + + + D + + + N H + I+GD
Sbjct: 3 LISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESN-------HSAKLIKGD 50
>3uiy_A Chimera protein of SEFD and SEFA; deuterium, pilin, immunoglobulin,
immunoglobulin like fold, chaperone-usher minor pilin
domain; 3.10A {Salmonella enterica subsp} PDB: 3uiz_A
Length = 152
Score = 28.3 bits (62), Expect = 2.1
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 11/93 (11%)
Query: 114 IWANPYLNKYYQQRYLYWSRYDEG----ILMDEESWYSVTPEKVAQHIASRCKAS---DV 166
I ++ K Y+ + + I + E W P+ + S + ++
Sbjct: 48 ISSSLEKIKNTPGAYIIRGQNNSAHKLRIRIGGEDW---QPDNSGIGMVSHSDFTNEFNI 104
Query: 167 VIDGWYSVTPEKVAQHIASRCKASDVVIDGFCG 199
G + + I + D GF G
Sbjct: 105 YFFGNGDIPVDTYLISIYATEIELDNK-QGFVG 136
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 28.9 bits (65), Expect = 2.3
Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 17/94 (18%)
Query: 179 VAQHIASRCKA-----SDVVIDGFCGC-GGNTIQFA--AVCQKVISIDIDPAKLRLAQHN 230
VA + +VVI G G G + A KVI + + LA+
Sbjct: 199 VAYNAVIVRGGGIRPGDNVVILG-GGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE- 256
Query: 231 ASVYGVSHKIQFIQGDFFALAPSLQG----DVVF 260
G H I + +F +
Sbjct: 257 ---LGADHVIDPTKENFVEAVLDYTNGLGAKLFL 287
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 28.5 bits (63), Expect = 2.5
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLR----LAQHNASVYGVSHKIQ 241
+ DVV+D G G + + A + V+++D D +++ A + G+ + +
Sbjct: 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPN-LL 84
Query: 242 FIQGDFFALAPSLQGDVVFLSPPW 265
++ L P + + PW
Sbjct: 85 YLWATAERLPPLSGVGELHVLMPW 108
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II
DNA-(cytosine N4) methyltransferase, amino methylation,
selenomethionine; HET: SAH; 2.80A {Proteus vulgaris}
SCOP: c.66.1.11
Length = 323
Score = 28.6 bits (64), Expect = 2.5
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 14/65 (21%)
Query: 176 PEKVAQH-IASRCKASDVVIDGFCGCGGNTIQFAAVCQKV----ISIDIDP-----AKLR 225
P K+ + I + D+V+D F G T V ++ IS ++ P + R
Sbjct: 238 PAKLPEFFIRMLTEPDDLVVDIFGGS-NTT---GLVAERESRKWISFEMKPEYVAASAFR 293
Query: 226 LAQHN 230
+N
Sbjct: 294 FLDNN 298
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 28.7 bits (65), Expect = 2.6
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 198 CGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
G G N + + + V +I+ P + A+ N GV + + I GD
Sbjct: 100 TGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN-VHVILGD 148
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA
methyltransferase RSRI, D binding, DNA modification, DNA
methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides}
SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Length = 319
Score = 28.6 bits (64), Expect = 2.9
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 16/64 (25%)
Query: 176 PEKVAQHI--ASRCKASDVVIDGFCGCGGNTIQFAAVCQK----VISIDIDP-----AKL 224
P V + + A V+D F G G A V + I D P +
Sbjct: 228 PAAVIERLVRAL-SHPGSTVLDFFAGSG----VTARVAIQEGRNSICTDAAPVFKEYYQK 282
Query: 225 RLAQ 228
+L
Sbjct: 283 QLTF 286
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 28.3 bits (63), Expect = 3.0
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV 236
+ + K V+D G G ++ +V+ +D L +A+
Sbjct: 42 RLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKG----- 96
Query: 237 SHKIQFIQGD 246
++
Sbjct: 97 --VKNVVEAK 104
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A
{Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B
Length = 691
Score = 28.3 bits (62), Expect = 3.9
Identities = 32/216 (14%), Positives = 62/216 (28%), Gaps = 21/216 (9%)
Query: 81 FGSQRKKKRRRKKR---------SFELNYQEDLGDLENVPEEIWANPYL--NKYYQQRYL 129
GS ++ + S+++ E+LG+++ V I Y + +Y +
Sbjct: 47 VGSAGCSEKHLLDKGSFERGAVDSYDVTVDEELGEIQLV--RIEKRKYGSNDDWYLKYIT 104
Query: 130 YWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKA 189
+ + + I W + E V + ++ D + E + R
Sbjct: 105 LKTPHGDYIEFPCYRWITGDVEVVLRDGRAKLARDDQIHILKQHRRKELETRQKQYR--- 161
Query: 190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 249
GF I I D K N S + I F +
Sbjct: 162 WMEWNPGFPLS----IDAKCHKDLPRDIQFDSEKGVDFVLNYSKAMENLFINRFMHMFQS 217
Query: 250 LAPSLQ-GDVVFLSPPWGGPEYARSSFSIDNIFPEQ 284
+ +F+ E + + D +F Q
Sbjct: 218 SWNDFADFEKIFVKISNTISERVMNHWQEDLMFGYQ 253
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding,
structural GENO protein structure initiative, PSI; 1.75A
{Escherichia coli O157}
Length = 376
Score = 28.1 bits (63), Expect = 4.1
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 193 VIDGFCGCGGNTIQFAAVCQKVI-SIDIDPA 222
VID F G GG ++ A V +++ID
Sbjct: 5 VIDLFSGVGGLSLGAARAGFDVKMAVEIDQH 35
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 28.2 bits (62), Expect = 4.4
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 191 DVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 249
V+D G G I A A +KV +++ A+ + H ++ I+G
Sbjct: 65 KTVLDVGTGSGILAIWSAQAGARKVYAVEATKM-ADHARALVKANNLDHIVEVIEGSVED 123
Query: 250 LAPSLQGDVV 259
++ + DV+
Sbjct: 124 ISLPEKVDVI 133
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli} SCOP:
c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 27.9 bits (63), Expect = 4.4
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 199 GCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDV 258
G T ++ I++D Q + + K+ Q D + +
Sbjct: 31 GLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGP---KLTIYQQDA------MTFNF 81
Query: 259 VFLSPPWGGP 268
L+ G P
Sbjct: 82 GELAEKMGQP 91
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 27.9 bits (63), Expect = 5.0
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 201 GGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVS 237
GG T A + + +++++I + + + N + GV
Sbjct: 95 GGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL 134
>3fhk_A UPF0403 protein YPHP; disulfide isomerase, thioredoxin superfamily,
CXC motif, structural genomics, surface entropy
reduction, Ser, PSI-2; 2.30A {Bacillus subtilis}
Length = 147
Score = 27.1 bits (60), Expect = 5.4
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 175 TPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKL 224
T E+V + + VV++ CGC + A Q V+ D P
Sbjct: 33 TAEEVENFMEKAEGTTLVVVNSVCGCAAGLAR-PAATQAVLQNDKTPDNT 81
>2zvi_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; methionine
salvage pathway, amino-acid biosynthesis, isomerase,
magnesium, metal- binding; 2.30A {Bacillus subtilis}
Length = 425
Score = 27.7 bits (61), Expect = 5.6
Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 13/119 (10%)
Query: 148 VTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQF 207
EK A+ IA+ + + W + K Q + K + ++ G + Q
Sbjct: 35 ADTEKKAEQIATGL--T---VGSWTDLPLVK--QEQMQKHKGRVIKVEEREGTAASEKQA 87
Query: 208 AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 266
I+ + +V+G I+ + + + P +G
Sbjct: 88 VI----TIAYPEINFSQDIPALLTTVFGKLSLDGKIKLIDLHFSEAFKRA--LPGPKFG 140
>2ia1_A BH3703 protein; unknown function, structural genomics, PSI, protein
structur initiative; 1.59A {Bacillus halodurans} SCOP:
d.359.1.1 PDB: 3i0t_A
Length = 178
Score = 27.2 bits (60), Expect = 6.3
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 92 KKRSFELNYQEDLGDLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVT 149
S E D+ D+ VP++ ++ KY + + + E W S
Sbjct: 48 SASSDEWTKDIDIRDVIKVPQDE----FMEKYNELSFCISDFRKDYAEAFGEPWMSFQ 101
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 27.8 bits (61), Expect = 6.5
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 190 SDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF 248
+V+D CG G + A A +K+ +++ + A+ ++ +I I G
Sbjct: 159 DKIVLDVGCGSGILSFFAAQAGARKIYAVEASTM-AQHAEVLVKSNNLTDRIVVIPGKVE 217
Query: 249 ALAPSLQGDVV 259
++ Q D++
Sbjct: 218 EVSLPEQVDII 228
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation
mutagenesis, regioselectivity transferase; HET: SAH EUG;
1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A*
Length = 368
Score = 27.5 bits (61), Expect = 6.8
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 235 GVSHKIQFIQGDFFALAPSLQGDVVFLS 262
++ + GD F P GD +F+
Sbjct: 243 PAFSGVEHLGGDMFDGVPK--GDAIFIK 268
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 27.4 bits (61), Expect = 6.8
Identities = 10/68 (14%), Positives = 16/68 (23%), Gaps = 11/68 (16%)
Query: 198 CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG- 256
C G +V I+ P A+ + GD + +
Sbjct: 41 CSSGALGAAIKENGTRVSGIEAFPEAAEQAK--------EKLDHVVLGDIETMDMPYEEE 92
Query: 257 --DVVFLS 262
D V
Sbjct: 93 QFDCVIFG 100
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 27.2 bits (61), Expect = 7.9
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 191 DVVIDGFC-GCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVS 237
++V D GG T A + + + + D+D +LR + N S GV
Sbjct: 120 EIVAD-MAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL 169
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 27.1 bits (61), Expect = 9.3
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 213 KVISIDIDPAKL 224
+ IDIDPAKL
Sbjct: 301 YFLQIDIDPAKL 312
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 26.8 bits (60), Expect = 9.9
Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ--------KVISIDIDP-----AKLRLA 227
+++ K ++D G G T F + +++ I+ +K L
Sbjct: 76 EYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLN 135
Query: 228 QHNASVYGVSHKIQFIQGD 246
+ S+ S ++ ++GD
Sbjct: 136 TDDRSMLD-SGQLLIVEGD 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,399,115
Number of extensions: 332869
Number of successful extensions: 980
Number of sequences better than 10.0: 1
Number of HSP's gapped: 941
Number of HSP's successfully gapped: 222
Length of query: 342
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 248
Effective length of database: 4,077,219
Effective search space: 1011150312
Effective search space used: 1011150312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)