BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15745
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex
Length = 283
Score = 164 bits (416), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 95/111 (85%), Gaps = 2/111 (1%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTH 119
+LPCS+VT ALLGSY VQSELGDYD +E DY+ EF+FAPN T ELE +V+ELHK+H
Sbjct: 110 RLPCSFVTLALLGSYTVQSELGDYDPDE--CGSDYISEFRFAPNHTKELEDKVIELHKSH 167
Query: 120 KGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE 170
+G TPAEAE+++L+NAKKLSMYGV LH AKDSEGV+IMLGVCASG+L+Y +
Sbjct: 168 RGMTPAEAEMHFLENAKKLSMYGVDLHHAKDSEGVEIMLGVCASGLLIYRD 218
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 48/60 (80%), Gaps = 2/60 (3%)
Query: 1 LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHK 60
LPCS+VT ALLGSY VQSELGDYD +E DY+ EF+FAPN T ELE +V+ELHK+H+
Sbjct: 111 LPCSFVTLALLGSYTVQSELGDYDPDE--CGSDYISEFRFAPNHTKELEDKVIELHKSHR 168
>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1)
Length = 283
Score = 164 bits (416), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 95/111 (85%), Gaps = 2/111 (1%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTH 119
+LPCS+VT ALLGSY VQSELGDYD +E DY+ EF+FAPN T ELE +V+ELHK+H
Sbjct: 110 RLPCSFVTLALLGSYTVQSELGDYDPDE--CGSDYISEFRFAPNHTKELEDKVIELHKSH 167
Query: 120 KGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE 170
+G TPAEAE+++L+NAKKLSMYGV LH AKDSEGV+IMLGVCASG+L+Y +
Sbjct: 168 RGMTPAEAEMHFLENAKKLSMYGVDLHHAKDSEGVEIMLGVCASGLLIYRD 218
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 48/60 (80%), Gaps = 2/60 (3%)
Query: 1 LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHK 60
LPCS+VT ALLGSY VQSELGDYD +E DY+ EF+FAPN T ELE +V+ELHK+H+
Sbjct: 111 LPCSFVTLALLGSYTVQSELGDYDPDE--CGSDYISEFRFAPNHTKELEDKVIELHKSHR 168
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
pdb|3QIJ|B Chain B, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
Length = 296
Score = 155 bits (393), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 92/111 (82%), Gaps = 2/111 (1%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTH 119
+LPCS+ T ALLGSY +QSELGDYD E H DY+ +FK APNQT ELE++VMELHK++
Sbjct: 125 RLPCSFATLALLGSYTIQSELGDYDPELH--GVDYVSDFKLAPNQTKELEEKVMELHKSY 182
Query: 120 KGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE 170
+ TPA+A+L +L+NAKKLSMYGV LH AKD EGVDI+LGVC+SG+LVY +
Sbjct: 183 RSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKD 233
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%), Gaps = 2/60 (3%)
Query: 1 LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHK 60
LPCS+ T ALLGSY +QSELGDYD E H DY+ +FK APNQT ELE++VMELHK+++
Sbjct: 126 LPCSFATLALLGSYTIQSELGDYDPELH--GVDYVSDFKLAPNQTKELEEKVMELHKSYR 183
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|B Chain B, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|C Chain C, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
Length = 279
Score = 155 bits (393), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 92/111 (82%), Gaps = 2/111 (1%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTH 119
+LPCS+ T ALLGSY +QSELGDYD E H DY+ +FK APNQT ELE++VMELHK++
Sbjct: 108 RLPCSFATLALLGSYTIQSELGDYDPELH--GVDYVSDFKLAPNQTKELEEKVMELHKSY 165
Query: 120 KGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE 170
+ TPA+A+L +L+NAKKLSMYGV LH AKD EGVDI+LGVC+SG+LVY +
Sbjct: 166 RSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKD 216
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%), Gaps = 2/60 (3%)
Query: 1 LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHK 60
LPCS+ T ALLGSY +QSELGDYD E H DY+ +FK APNQT ELE++VMELHK+++
Sbjct: 109 LPCSFATLALLGSYTIQSELGDYDPELH--GVDYVSDFKLAPNQTKELEEKVMELHKSYR 166
>pdb|2RQ1|A Chain A, Solution Structure Of The 4.1r Ferm Alpha Lobe Domain
Length = 109
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 66/81 (81%), Gaps = 2/81 (2%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTH 119
+LPCS+ T ALLGSY +QSELGDYD E H DY+ +FK APNQT ELE++VMELHK++
Sbjct: 30 RLPCSFATLALLGSYTIQSELGDYDPELH--GVDYVSDFKLAPNQTKELEEKVMELHKSY 87
Query: 120 KGQTPAEAELNYLDNAKKLSM 140
+ TPA+A+L +L+NAKKLSM
Sbjct: 88 RSMTPAQADLEFLENAKKLSM 108
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%), Gaps = 2/60 (3%)
Query: 1 LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHK 60
LPCS+ T ALLGSY +QSELGDYD E H DY+ +FK APNQT ELE++VMELHK+++
Sbjct: 31 LPCSFATLALLGSYTIQSELGDYDPELH--GVDYVSDFKLAPNQTKELEEKVMELHKSYR 88
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
Length = 296
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 77/168 (45%), Gaps = 27/168 (16%)
Query: 25 QEEHKGNPDYLREFKFAPNQTPE---------LEQRVMELHK-----THKLPCSYVTYAL 70
QE K NP +FKF PE + Q++ L + ++ C T L
Sbjct: 67 QEVRKENP---LQFKFRAKFYPEDVAEELIQDITQKLFFLQVKEGILSDEIYCPPETAVL 123
Query: 71 LGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQT--------PELEQRVMELHKTHKGQ 122
LGSY VQ++ GDY++E HK YL + P + + E R+ H H+G
Sbjct: 124 LGSYAVQAKFGDYNKEVHKSG--YLSSERLIPQRVMDQHKLTRDQWEDRIQVWHAEHRGM 181
Query: 123 TPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE 170
A L YL A+ L MYG+ K+ +G D+ LGV A G+ +Y +
Sbjct: 182 LKDNAMLEYLKIAQDLEMYGINYFEIKNKKGTDLWLGVDALGLNIYEK 229
>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
Length = 297
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 63 CSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPE--------LEQRVME 114
C T LL SY VQ++ GDY++E HK P YL + P + E E+R+
Sbjct: 117 CPPETAVLLASYAVQAKYGDYNKEIHK--PGYLANDRLLPQRVLEQHKLTKEQWEERIQN 174
Query: 115 LHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVY 168
H+ H+G ++ + YL A+ L MYGV K+ +G ++ LGV A G+ +Y
Sbjct: 175 WHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIY 228
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMT|B Chain B, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMS|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Cd43
Length = 322
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 84/186 (45%), Gaps = 34/186 (18%)
Query: 5 YVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPE---------LEQR---- 51
Y T+ L + Q Q+ K NP +FKF PE + QR
Sbjct: 57 YSTWLKLNKKVTQ-------QDVKKENP---LQFKFRAKFFPEDVSEELIQEITQRLFFL 106
Query: 52 -VMELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPE--- 107
V E ++ C T LL SY VQ++ GDY++E HK P YL + P + E
Sbjct: 107 QVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHK--PGYLANDRLLPQRVLEQHK 164
Query: 108 -----LEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCA 162
E+R+ H+ H+G ++ + YL A+ L MYGV K+ +G ++ LGV A
Sbjct: 165 LTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDA 224
Query: 163 SGILVY 168
G+ +Y
Sbjct: 225 LGLNIY 230
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain
pdb|2D2Q|B Chain B, Crystal Structure Of The Dimerized Radixin Ferm Domain
Length = 310
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 63 CSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPE--------LEQRVME 114
C T LL SY VQ++ GDY++E HK P YL + P + E E+R+
Sbjct: 117 CPPETAVLLASYAVQAKYGDYNKEIHK--PGYLANDRLLPQRVLEQHKLTKEQWEERIQN 174
Query: 115 LHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVY 168
H+ H+G ++ + YL A+ L MYGV K+ +G ++ LGV A G+ +Y
Sbjct: 175 WHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIY 228
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D11|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2YVC|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
Length = 312
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 63 CSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPE--------LEQRVME 114
C T LL SY VQ++ GDY++E HK P YL + P + E E+R+
Sbjct: 119 CPPETAVLLASYAVQAKYGDYNKEIHK--PGYLANDRLLPQRVLEQHKLTKEQWEERIQN 176
Query: 115 LHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVY 168
H+ H+G ++ + YL A+ L MYGV K+ +G ++ LGV A G+ +Y
Sbjct: 177 WHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIY 230
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed With
The Icam-2 Cytoplasmic Peptide
Length = 317
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 63 CSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPE--------LEQRVME 114
C T LL SY VQ++ GDY++E HK P YL + P + E E+R+
Sbjct: 117 CPPETAVLLASYAVQAKYGDYNKEIHK--PGYLANDRLLPQRVLEQHKLTKEQWEERIQN 174
Query: 115 LHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVY 168
H+ H+G ++ + YL A+ L MYGV K+ +G ++ LGV A G+ +Y
Sbjct: 175 WHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIY 228
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain
Complexed With The Mouse Cd44 Cytoplasmic Peptide
Length = 312
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 63 CSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPE--------LEQRVME 114
C T LL SY VQ++ GDY++E HK P YL + P + E E+R+
Sbjct: 119 CPPETAVLLASYAVQAKYGDYNKEIHK--PGYLANDRLLPQRVLEQHKLTKEQWEERIQN 176
Query: 115 LHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVY 168
H+ H+G ++ + YL A+ L MYGV K+ +G ++ LGV A G+ +Y
Sbjct: 177 WHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIY 230
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain
pdb|3U8Z|B Chain B, Human Merlin Ferm Domain
pdb|3U8Z|C Chain C, Human Merlin Ferm Domain
pdb|3U8Z|D Chain D, Human Merlin Ferm Domain
Length = 300
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 10/117 (8%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQ-------TPEL-EQR 111
K+ C LL SY VQ++ GDYD HK +L + + P + TPE+ E+R
Sbjct: 118 KIYCPPEASVLLASYAVQAKYGDYDPSVHKRG--FLAQEELLPKRVINLYQMTPEMWEER 175
Query: 112 VMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVY 168
+ + H+G+ EAE+ YL A+ L MYGV ++ +G +++LGV A G+ +Y
Sbjct: 176 ITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIY 232
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 10/117 (8%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQ-------TPEL-EQR 111
K+ C LL SY VQ++ GDYD HK +L + + P + TPE+ E+R
Sbjct: 131 KIYCPPEASVLLASYAVQAKYGDYDPSVHKRG--FLAQEELLPKRVINLYQMTPEMWEER 188
Query: 112 VMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVY 168
+ + H+G+ EAE+ YL A+ L MYGV ++ +G +++LGV A G+ +Y
Sbjct: 189 ITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIY 245
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 10/117 (8%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQ-------TPEL-EQR 111
K+ C LL SY VQ++ GDYD HK +L + + P + TPE+ E+R
Sbjct: 131 KIYCPPEASVLLASYAVQAKYGDYDPSVHKRG--FLAQEELLPKRVINLYQMTPEMWEER 188
Query: 112 VMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVY 168
+ + H+G+ EAE+ YL A+ L MYGV ++ +G +++LGV A G+ +Y
Sbjct: 189 ITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIY 245
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 10/117 (8%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQ-------TPEL-EQR 111
K+ C LL SY VQ++ GDYD HK +L + + P + TPE+ E+R
Sbjct: 113 KVYCPPEASVLLASYAVQAKYGDYDPSVHKRG--FLAQEELLPKRVINLYQMTPEMWEER 170
Query: 112 VMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVY 168
+ + H+G+ EAE+ YL A+ L MYGV ++ +G +++LGV A G+ +Y
Sbjct: 171 ITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFTIRNKKGTELLLGVDALGLHIY 227
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 63 CSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPE--------LEQRVME 114
C T LL SY VQS+ GD+++E HK YL K P + E E+R+
Sbjct: 117 CPPETAVLLASYAVQSKYGDFNKEVHKSG--YLAGDKLLPQRVLEQHKLNKDQWEERIQV 174
Query: 115 LHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE 170
H+ H+G +A L YL A+ L MYGV K+ +G ++ LGV A G+ +Y +
Sbjct: 175 WHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYEQ 230
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide
Length = 297
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 63 CSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPE--------LEQRVME 114
C T LL SY VQS+ GD+++E HK YL K P + E E+R+
Sbjct: 117 CPPETAVLLASYAVQSKYGDFNKEVHKSG--YLAGDKLLPQRVLEQHKLNKDQWEERIQV 174
Query: 115 LHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE 170
H+ H+G +A L YL A+ L MYGV K+ +G ++ LGV A G+ +Y +
Sbjct: 175 WHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYEQ 230
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
pdb|1EF1|B Chain B, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
Length = 294
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 10/116 (8%)
Query: 63 CSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPE--------LEQRVME 114
C T LL SY VQS+ GD+++E HK YL K P + E E+R+
Sbjct: 114 CPPETAVLLASYAVQSKYGDFNKEVHKSG--YLAGDKLLPQRVLEQHKLNKDQWEERIQV 171
Query: 115 LHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE 170
H+ H+G +A L YL A+ L YGV K+ +G ++ LGV A G+ +Y +
Sbjct: 172 WHEEHRGXLREDAVLEYLKIAQDLEXYGVNYFSIKNKKGSELWLGVDALGLNIYEQ 227
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
Domain At 3.0 Angstrom Resolution
Length = 575
Score = 49.3 bits (116), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Query: 63 CSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTP--------ELEQRVME 114
C T LL SY VQ+ GD++ H P +L + P + E EQ +
Sbjct: 117 CPPETSVLLASYAVQARHGDHNPAVH--GPGFLANDRLLPQRVTDQHKMSREEWEQSITN 174
Query: 115 LHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE 170
+ H+G +A + YL A+ L MYGV ++ + ++ LGV A G+ +Y +
Sbjct: 175 WWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEK 230
>pdb|3G9W|A Chain A, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
pdb|3G9W|B Chain B, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
Length = 223
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Query: 62 PCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPE---LEQRVMELHKT 118
P S+ G + Q + G + EHK P +L +F P + + E+R+ + HK
Sbjct: 46 PVSFEKACEFGGFQAQIQFGPH--VEHKHKPGFLDLKEFLPKEYIKQRGAEKRIFQEHKN 103
Query: 119 HKGQTPAEAELNYLDNAKKLSMYGVVLHPAKD-----SEGVDIMLGVCASGILVYSE 170
+ EA++ Y+ A+ L YGV K+ ++ V +LG+ ++ E
Sbjct: 104 CGEMSEIEAKVKYVKLARSLRTYGVSFFLVKEKMKGKNKLVPRLLGITKDSVMRVDE 160
>pdb|1MK7|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK7|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|F Chain F, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|H Chain H, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 192
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 62 PCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQ--TPELEQRVMELHKTH 119
P S+ Y Q + G +++++HK P +L F P + + E+++ HK
Sbjct: 21 PVSFDKACEFAGYQCQIQFGPHNEQKHK--PGFLELKDFLPKEYIKQKGERKIFMAHKNC 78
Query: 120 KGQTPAEAELNYLDNAKKLSMYGVVLHPAKD 150
+ EA++ Y+ A+ L YGV K+
Sbjct: 79 GNMSEIEAKVRYVKLARSLKTYGVSFFLVKE 109
>pdb|1MIZ|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 201
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 62 PCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQ--TPELEQRVMELHKTH 119
P S+ Y Q + G +++++HK P +L F P + + E+++ HK
Sbjct: 30 PVSFDKACEFAGYQCQIQFGPHNEQKHK--PGFLELKDFLPKEYIKQKGERKIFMAHKNC 87
Query: 120 KGQTPAEAELNYLDNAKKLSMYGVVLHPAKD 150
+ EA++ Y+ A+ L YGV K+
Sbjct: 88 GNMSEIEAKVRYVKLARSLKTYGVSFFLVKE 118
>pdb|1MIX|A Chain A, Crystal Structure Of A Ferm Domain Of Talin
Length = 206
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 62 PCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQ--TPELEQRVMELHKTH 119
P S+ Y Q + G +++++HK P +L F P + + E+++ HK
Sbjct: 35 PVSFDKACEFAGYQCQIQFGPHNEQKHK--PGFLELKDFLPKEYIKQKGERKIFMAHKNC 92
Query: 120 KGQTPAEAELNYLDNAKKLSMYGVVLHPAKD 150
+ EA++ Y+ A+ L YGV K+
Sbjct: 93 GNMSEIEAKVRYVKLARSLKTYGVSFFLVKE 123
>pdb|1Y19|B Chain B, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|D Chain D, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|F Chain F, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|H Chain H, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|J Chain J, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|L Chain L, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
Length = 202
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%)
Query: 62 PCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKG 121
P S+ + Q + G +++++HK L++F + E+++ + HK
Sbjct: 21 PVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQ 80
Query: 122 QTPAEAELNYLDNAKKLSMYGVVLHPAKD 150
+ EA++ Y+ A+ L YGV K+
Sbjct: 81 MSEIEAKVRYVKLARSLKTYGVSFFLVKE 109
>pdb|4F7G|A Chain A, Crystal Structure Of Talin Autoinhibition Complex
Length = 222
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%)
Query: 62 PCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKG 121
P S+ + Q + G +++++HK L++F + E+++ + HK
Sbjct: 46 PVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQ 105
Query: 122 QTPAEAELNYLDNAKKLSMYGVVLHPAKD 150
+ EA++ Y+ A+ L YGV K+
Sbjct: 106 MSEIEAKVRYVKLARSLKTYGVSFFLVKE 134
>pdb|3IVF|A Chain A, Crystal Structure Of The Talin Head Ferm Domain
Length = 371
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%)
Query: 62 PCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKG 121
P S+ + Q + G +++++HK L++F + E+++ + HK
Sbjct: 200 PVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQ 259
Query: 122 QTPAEAELNYLDNAKKLSMYGVVLHPAKD 150
+ EA++ Y+ A+ L YGV K+
Sbjct: 260 MSEIEAKVRYVKLARSLKTYGVSFFLVKE 288
>pdb|2HRJ|A Chain A, Nmr Solution Structure Of The F2 Subdomain Of Talin
Length = 121
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 62 PCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQ--TPELEQRVMELHKTH 119
P S+ Y Q + G +++++HK P +L F P + + E+++ HK
Sbjct: 41 PVSFDKACEFAGYQCQIQFGPHNEQKHK--PGFLELKDFLPKEYIKQKGERKIFMAHKNC 98
Query: 120 KGQTPAEAELNYLDNAKKLSMYG 142
+ EA++ Y+ A+ L YG
Sbjct: 99 GNMSEIEAKVRYVKLARSLKTYG 121
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 33.1 bits (74), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 19/136 (13%)
Query: 35 LREFKFAPNQTPELEQRVMELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDY 94
L +F F TPE +R + + + VT G + LG E +G P Y
Sbjct: 158 LTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPY 217
Query: 95 LRE------FKFAPNQTPELE-------------QRVMELHKTHKGQTPAEAELNYLDNA 135
L E + A N TPEL+ R +E+ +G + +L A
Sbjct: 218 LNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELIQHQFLKIA 277
Query: 136 KKLSMYGVVLHPAKDS 151
K LS ++ AK++
Sbjct: 278 KPLSSLTPLIAAAKEA 293
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 19/136 (13%)
Query: 35 LREFKFAPNQTPELEQRVMELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDY 94
L +F F TPE +R + + + VT G + LG E +G P Y
Sbjct: 158 LTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPY 217
Query: 95 LRE------FKFAPNQTPELE-------------QRVMELHKTHKGQTPAEAELNYLDNA 135
L E + A N TPEL+ R +E+ +G + +L A
Sbjct: 218 LNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELIQHQFLKIA 277
Query: 136 KKLSMYGVVLHPAKDS 151
K LS ++ AK++
Sbjct: 278 KPLSSLTPLIAAAKEA 293
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 32.7 bits (73), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 19/136 (13%)
Query: 35 LREFKFAPNQTPELEQRVMELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDY 94
L +F F TPE +R + + + VT G + LG E +G P Y
Sbjct: 157 LTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPY 216
Query: 95 LRE------FKFAPNQTPELE-------------QRVMELHKTHKGQTPAEAELNYLDNA 135
L E + A N TPEL+ R +E+ +G + +L A
Sbjct: 217 LNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLKIA 276
Query: 136 KKLSMYGVVLHPAKDS 151
K LS ++ AK++
Sbjct: 277 KPLSSLTPLIAAAKEA 292
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 19/136 (13%)
Query: 35 LREFKFAPNQTPELEQRVMELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDY 94
L +F F TPE +R + + + VT G + LG E +G P Y
Sbjct: 157 LTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPY 216
Query: 95 LRE------FKFAPNQTPELE-------------QRVMELHKTHKGQTPAEAELNYLDNA 135
L E + A N TPEL+ R +++ +G + +L A
Sbjct: 217 LNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIA 276
Query: 136 KKLSMYGVVLHPAKDS 151
K LS ++ AK++
Sbjct: 277 KPLSSLTPLIAAAKEA 292
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 19/136 (13%)
Query: 35 LREFKFAPNQTPELEQRVMELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDY 94
L +F F TPE +R + + + VT G + LG E +G P Y
Sbjct: 157 LTDFGFCAQITPEQSKRSEMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPY 216
Query: 95 LRE------FKFAPNQTPELE-------------QRVMELHKTHKGQTPAEAELNYLDNA 135
L E + A N TPEL+ R +++ +G + +L A
Sbjct: 217 LNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIA 276
Query: 136 KKLSMYGVVLHPAKDS 151
K LS ++ AK++
Sbjct: 277 KPLSSLTPLIAAAKEA 292
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 76 VQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPA---------E 126
V+ + D+ + + +P + + P++T L R++ K H +TP+ E
Sbjct: 76 VECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVKEFE 135
Query: 127 AELNYLDNAKK 137
+ L+ LDN KK
Sbjct: 136 SHLDKLDNEKK 146
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 76 VQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPA---------E 126
V+ + D+ + + +P + + P++T L R++ K H +TP+ E
Sbjct: 76 VECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVKEFE 135
Query: 127 AELNYLDNAKK 137
+ L+ LDN KK
Sbjct: 136 SHLDKLDNEKK 146
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 76 VQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPA---------E 126
V+ + D+ + + +P + + P++T L R++ K H +TP+ E
Sbjct: 76 VECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVKEFE 135
Query: 127 AELNYLDNAKK 137
+ L+ LDN KK
Sbjct: 136 SHLDKLDNEKK 146
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
Query: 100 FAPNQTPELEQRVMELHKTHKGQTPA---------EAELNYLDNAKK 137
+ P++T L R++ K H +TP+ E+ L+ LDN KK
Sbjct: 100 WNPSETVRLTARILAKQKIHPERTPSEKLLAVREFESHLDKLDNEKK 146
>pdb|1RP3|A Chain A, Cocrystal Structure Of The Flagellar SigmaANTI-Sigma
Complex, Sigma-28FLGM
pdb|1RP3|C Chain C, Cocrystal Structure Of The Flagellar SigmaANTI-Sigma
Complex, Sigma-28FLGM
pdb|1RP3|E Chain E, Cocrystal Structure Of The Flagellar SigmaANTI-Sigma
Complex, Sigma-28FLGM
pdb|1RP3|G Chain G, Cocrystal Structure Of The Flagellar SigmaANTI-Sigma
Complex, Sigma-28FLGM
pdb|1SC5|A Chain A, Sigma-28(Flia)FLGM COMPLEX
Length = 239
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 93 DYLREFKFAPNQTPELEQRVMELHKTHK---GQTPAEAEL 129
DYLR F Q E E+R+ E+ + K G+ P + E+
Sbjct: 82 DYLRSLDFGSRQVREKERRIKEVVEKLKEKLGREPTDEEV 121
>pdb|1Y67|A Chain A, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|B Chain B, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|C Chain C, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|D Chain D, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|2AW9|A Chain A, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
pdb|2AW9|B Chain B, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
Length = 229
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
Query: 106 PELEQRVMELHKTHKGQTPAEAELNYLDNAKK 137
P ++ R ME+H T QT Y+DNA K
Sbjct: 18 PHIDARTMEIHHTKHHQT-------YVDNANK 42
>pdb|3KKY|A Chain A, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
pdb|3KKY|B Chain B, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
Length = 211
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
Query: 106 PELEQRVMELHKTHKGQTPAEAELNYLDNAKK 137
P ++ R ME+H T QT Y+DNA K
Sbjct: 17 PHIDARTMEIHHTKHHQT-------YVDNANK 41
>pdb|2CDY|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|C Chain C, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|D Chain D, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
Length = 231
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
Query: 106 PELEQRVMELHKTHKGQTPAEAELNYLDNAKK 137
P ++ R ME+H T QT Y+DNA K
Sbjct: 37 PHIDARTMEIHHTKHHQT-------YVDNANK 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,817,498
Number of Sequences: 62578
Number of extensions: 257282
Number of successful extensions: 518
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 439
Number of HSP's gapped (non-prelim): 70
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)