Query psy15745
Match_columns 170
No_of_seqs 128 out of 1056
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 20:17:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3530|consensus 100.0 3.8E-43 8.2E-48 296.2 11.1 164 4-170 50-227 (616)
2 KOG3527|consensus 100.0 2.7E-36 5.9E-41 262.7 7.6 164 4-170 71-247 (975)
3 KOG0792|consensus 100.0 1E-31 2.2E-36 238.3 11.4 154 12-169 74-246 (1144)
4 KOG3529|consensus 99.9 1.9E-26 4.1E-31 199.8 8.6 163 5-169 53-238 (596)
5 smart00295 B41 Band 4.1 homolo 99.9 3.9E-23 8.5E-28 158.3 10.3 130 15-146 58-207 (207)
6 PF00373 FERM_M: FERM central 99.9 4.7E-23 1E-27 146.6 9.0 98 47-146 13-126 (126)
7 KOG3531|consensus 99.9 3.3E-23 7.1E-28 180.7 0.7 165 1-170 76-254 (1036)
8 KOG4261|consensus 99.6 4.6E-16 1E-20 135.5 0.2 151 11-165 167-335 (1003)
9 KOG0248|consensus 99.3 3.2E-12 6.9E-17 110.8 3.9 114 53-169 704-830 (936)
10 KOG4371|consensus 99.0 4.2E-10 9.1E-15 101.4 4.1 136 32-169 587-752 (1332)
11 cd00836 FERM_C FERM_C domain. 98.6 5E-08 1.1E-12 65.9 3.6 31 140-170 1-31 (92)
12 KOG3552|consensus 98.2 3.1E-06 6.7E-11 76.4 6.9 126 35-162 264-423 (1298)
13 cd00435 ACBP Acyl CoA binding 98.2 3.2E-05 6.9E-10 51.6 9.1 76 53-142 9-85 (85)
14 PF00887 ACBP: Acyl CoA bindin 97.9 4.9E-05 1.1E-09 50.8 6.9 63 61-137 19-81 (87)
15 PF09379 FERM_N: FERM N-termin 97.5 2.9E-05 6.2E-10 50.7 0.1 39 3-42 35-80 (80)
16 KOG3727|consensus 97.4 0.00024 5.2E-09 61.5 5.2 106 55-162 456-574 (664)
17 PTZ00458 acyl CoA binding prot 97.4 0.0028 6.2E-08 42.6 8.8 66 62-141 20-86 (90)
18 KOG3531|consensus 97.0 0.00041 8.8E-09 62.6 2.5 152 13-167 229-392 (1036)
19 KOG4257|consensus 96.7 0.0039 8.4E-08 55.5 5.8 136 32-167 91-254 (974)
20 COG4281 ACB Acyl-CoA-binding p 96.6 0.017 3.6E-07 37.4 7.1 75 51-139 8-82 (87)
21 KOG3530|consensus 96.3 0.0052 1.1E-07 53.7 4.5 65 1-67 120-186 (616)
22 KOG0817|consensus 96.3 0.015 3.3E-07 42.3 6.2 71 63-147 23-94 (142)
23 KOG4371|consensus 95.7 0.0039 8.4E-08 57.7 1.0 52 35-87 119-182 (1332)
24 KOG4335|consensus 92.3 0.092 2E-06 45.4 2.2 117 50-169 355-493 (558)
25 KOG3878|consensus 90.7 0.5 1.1E-05 39.1 4.8 68 59-137 49-116 (469)
26 KOG4335|consensus 87.4 0.38 8.2E-06 41.8 2.0 136 32-169 198-388 (558)
27 KOG3527|consensus 85.0 0.81 1.8E-05 42.2 2.9 73 1-75 140-219 (975)
28 KOG3784|consensus 79.9 1.9 4.1E-05 36.5 3.1 34 115-148 234-267 (407)
29 PF08269 Cache_2: Cache domain 38.6 54 0.0012 21.4 3.5 46 115-160 26-73 (95)
30 KOG0792|consensus 34.3 57 0.0012 31.5 4.0 64 1-66 134-205 (1144)
31 COG3093 VapI Plasmid maintenan 25.5 1.3E+02 0.0027 20.8 3.6 20 55-74 42-61 (104)
32 cd01215 Dab Disabled (Dab) Pho 23.4 84 0.0018 22.8 2.5 18 152-169 51-68 (139)
33 cd08356 Glo_EDI_BRP_like_17 Th 21.2 98 0.0021 20.6 2.5 21 139-159 92-112 (113)
No 1
>KOG3530|consensus
Probab=100.00 E-value=3.8e-43 Score=296.16 Aligned_cols=164 Identities=40% Similarity=0.630 Sum_probs=154.7
Q ss_pred CchhHHhh---hchhhcccCCCCCcccccCC-Ccc-eeeeeeCCCCchHHHHHHHH---------HhhccccccChhHHH
Q psy15745 4 SYVTYALL---GSYLVQSELGDYDQEEHKGN-PDY-LREFKFAPNQTPELEQRVME---------LHKTHKLPCSYVTYA 69 (170)
Q Consensus 4 ~~~~~~~~---g~~~Wl~~~~~~~~~q~~~~-~~~-~~~vkfy~~~~~~l~~~~tr---------di~~g~l~~~~~~~~ 69 (170)
+||++.++ ....|||+.|+| .+|++.+ |+. +||||||+.+|..|.+++|| ||++|||+|+.++|+
T Consensus 50 DYFGLry~D~~~~~hWLD~tK~I-~kqvK~gppytL~~rVKfY~sdP~~Lree~tRYqfflQlKqDll~GRL~Cp~~~Aa 128 (616)
T KOG3530|consen 50 DYFGLRYQDSSKVRHWLDPTKSI-KKQVKIGPPYTLHLRVKFYPSDPNNLREENTRYQFFLQLKQDLLSGRLYCPFETAA 128 (616)
T ss_pred eccceeeechhhcceecCcchhH-HHHhccCCCeEEEEEEEeccCChhhhhchhhHHHHHHHHHHHHhcCCCCCchhhHH
Confidence 45666655 567899999999 8999865 566 99999999999999999888 999999999999999
Q ss_pred HHHHHHHHhhcCCCCccccCCCcCccccccCCCCCchHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCCcceeec
Q psy15745 70 LLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAK 149 (170)
Q Consensus 70 ~Laal~~Q~e~Gd~~~~~~~~~~~yl~~~~~lP~~~~~~~~~i~~~h~~~~G~s~~~A~~~yL~~~~~l~~YG~~~f~vk 149 (170)
+||||++|+|+|||++.+|+ ..|.++++|+|.+++++|.+|.+.|++++|+++++||+.||+.|++|+||||..|.|+
T Consensus 129 eLaAl~lQsELGDYn~~~Ht--~~yVSefRf~p~Qte~LE~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V~ 206 (616)
T KOG3530|consen 129 ELAALILQSELGDYNEEEHT--GGYVSEFRFLPNQTEELEERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPVK 206 (616)
T ss_pred HHHHHHHHHHhcCCChhhcc--ccceeeeEecccccHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceeee
Confidence 99999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeEcCCeeEEccC
Q psy15745 150 DSEGVDIMLGVCASGILVYSE 170 (170)
Q Consensus 150 d~~~~~~~lgI~~~Gi~v~~~ 170 (170)
..+|.+..||+++.||.||++
T Consensus 207 g~dg~ey~LGLTptGIlvf~g 227 (616)
T KOG3530|consen 207 GHDGSEYYLGLTPTGILVFEG 227 (616)
T ss_pred cCCCceeEeeccCceEEEEEC
Confidence 999999999999999999974
No 2
>KOG3527|consensus
Probab=100.00 E-value=2.7e-36 Score=262.74 Aligned_cols=164 Identities=56% Similarity=0.864 Sum_probs=155.8
Q ss_pred CchhHHhh---hchhhcccCCCCCcccccCCCcc-eeeeeeCCCCchHHHHHHHH---------HhhccccccChhHHHH
Q psy15745 4 SYVTYALL---GSYLVQSELGDYDQEEHKGNPDY-LREFKFAPNQTPELEQRVME---------LHKTHKLPCSYVTYAL 70 (170)
Q Consensus 4 ~~~~~~~~---g~~~Wl~~~~~~~~~q~~~~~~~-~~~vkfy~~~~~~l~~~~tr---------di~~g~l~~~~~~~~~ 70 (170)
++|++.+. .+.+|||+.|.+ ++|+++.||. .|.|||||++|++|.+++|| ||++||+||+..+...
T Consensus 71 dyfgl~~~~~~~~~~wlD~~k~i-~k~vr~~~w~f~f~vKfyPp~Psql~EditrY~lcLq~R~Dil~GrlPcsfvt~al 149 (975)
T KOG3527|consen 71 DYFGLTYLTSSEQKNWLDPAKEI-KKQVRSFPWNFTFNVKFYPPDPSQLTEDITRYYLCLQLRQDILSGRLPCSFVTHAL 149 (975)
T ss_pred hhceeEEecCCCCccccccchhh-hcccccCccceeEeeeeCCCChHhccccchhheehhhhhhhhhcCccccchhhhhh
Confidence 34444433 578999999999 8999999999 99999999999999999998 9999999999999999
Q ss_pred HHHHHHHhhcCCCCccccCCCcCccccccCCCCCchHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCCcceeecC
Q psy15745 71 LGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKD 150 (170)
Q Consensus 71 Laal~~Q~e~Gd~~~~~~~~~~~yl~~~~~lP~~~~~~~~~i~~~h~~~~G~s~~~A~~~yL~~~~~l~~YG~~~f~vkd 150 (170)
|++|.+|+|+|||++..|. .+|++++.+-|.++.+++.+++++|+.++||++++|+++||..|.+|.|||+.++++||
T Consensus 150 lgsy~vq~E~gdYd~ee~~--~~y~~df~~aPnqt~eledkv~eLhkt~rg~~pa~A~ih~lenakkl~mYgvDlh~aKd 227 (975)
T KOG3527|consen 150 LGSYTVQSELGDYDPEEHG--SDYLSDFKFAPNQTKELEDKVMELHKTHRGMTPAEAEIHFLENAKKLSMYGVDLHHAKD 227 (975)
T ss_pred hhhHhHHhHhccCCHHHcc--cchhhhhccCcchhhhHHHHHHHHHhhhcCCChhHhHHHHHHhhhhhhhcccccccccc
Confidence 9999999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeEcCCeeEEccC
Q psy15745 151 SEGVDIMLGVCASGILVYSE 170 (170)
Q Consensus 151 ~~~~~~~lgI~~~Gi~v~~~ 170 (170)
+.|++|+||+|++|+.||+|
T Consensus 228 segvdi~lgvca~glliy~d 247 (975)
T KOG3527|consen 228 SEGVDIMLGVCASGLLIYRD 247 (975)
T ss_pred cccceeeecccccceEEeec
Confidence 99999999999999999986
No 3
>KOG0792|consensus
Probab=99.97 E-value=1e-31 Score=238.27 Aligned_cols=154 Identities=36% Similarity=0.504 Sum_probs=138.7
Q ss_pred hchhhcccCCCCCcccccCC--Cc-ceeeeeeCCCCchHHHHHHHH---------HhhccccccChhHHHHHHHHHHHhh
Q psy15745 12 GSYLVQSELGDYDQEEHKGN--PD-YLREFKFAPNQTPELEQRVME---------LHKTHKLPCSYVTYALLGSYLVQSE 79 (170)
Q Consensus 12 g~~~Wl~~~~~~~~~q~~~~--~~-~~~~vkfy~~~~~~l~~~~tr---------di~~g~l~~~~~~~~~Laal~~Q~e 79 (170)
+..+|+|+.|.+ ++|+... +. .+|||+||+++|..|.++.|| ||++||+||+..+|++||+|+.|++
T Consensus 74 ~~~rWvdleK~l-kkql~k~a~~p~l~frV~fyV~~p~~LqeE~TRyqyylQvK~di~eGrl~Ct~~qailLA~yavQae 152 (1144)
T KOG0792|consen 74 DQIRWVDLEKPL-KKQLIKVANPPLLHFRVKFYVPDPSGLQEEATRYQYYLQVKKDILEGRLPCTLNQAILLASYAVQAE 152 (1144)
T ss_pred CccceeccchhH-HHhhhccCCCceEEEEEEEEecChhHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHhhhhhh
Confidence 678999999999 7777643 44 499999999999999999999 9999999999999999999999999
Q ss_pred cCCCCccccCCCcCccccccCCCCC---c----hHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCCcceeecCCC
Q psy15745 80 LGDYDQEEHKGNPDYLREFKFAPNQ---T----PELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSE 152 (170)
Q Consensus 80 ~Gd~~~~~~~~~~~yl~~~~~lP~~---~----~~~~~~i~~~h~~~~G~s~~~A~~~yL~~~~~l~~YG~~~f~vkd~~ 152 (170)
||||+...+. +++.....+|.. . ++++++|.+.|++++|++++||+..||+.|++|++||..+|.++|..
T Consensus 153 ~gdy~~~~s~---~~l~~~~~~p~~~~~~~n~~~e~~~kVa~lhQ~h~G~~~~eAE~~yi~~~~rlegyG~e~~~akD~~ 229 (1144)
T KOG0792|consen 153 FGDYNQKQSQ---DGLEYLSVFPQCTLQDENVLEEFEQKVAELHQQHRGLLPAEAETNYINEAKRLEGYGEEFHRAKDLH 229 (1144)
T ss_pred hcchhhhcCC---ccchhccccccccccchhhHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHhhccccceecccccCC
Confidence 9999976665 565555555543 3 48999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeEcCCeeEEcc
Q psy15745 153 GVDIMLGVCASGILVYS 169 (170)
Q Consensus 153 ~~~~~lgI~~~Gi~v~~ 169 (170)
|.++.|||...||.|+.
T Consensus 230 g~~i~lGi~~~Gi~V~~ 246 (1144)
T KOG0792|consen 230 GNDINLGIARVGILVPG 246 (1144)
T ss_pred CcceeeeeeeceeEeec
Confidence 99999999999999986
No 4
>KOG3529|consensus
Probab=99.93 E-value=1.9e-26 Score=199.77 Aligned_cols=163 Identities=32% Similarity=0.435 Sum_probs=147.2
Q ss_pred chhHHhh---hchhhcccCCCCCcccccC-CCcc-eeeeeeCCCCch-HHHHHHHH---------HhhccccccChhHHH
Q psy15745 5 YVTYALL---GSYLVQSELGDYDQEEHKG-NPDY-LREFKFAPNQTP-ELEQRVME---------LHKTHKLPCSYVTYA 69 (170)
Q Consensus 5 ~~~~~~~---g~~~Wl~~~~~~~~~q~~~-~~~~-~~~vkfy~~~~~-~l~~~~tr---------di~~g~l~~~~~~~~ 69 (170)
||++.+. |...|+.++++...++++. .|.. .|++||||.++. +|.+++|. .|+.+.++|+.|+.+
T Consensus 53 yfgl~~~d~~~~~~wl~~d~~v~~~d~~k~~~~~~~f~akfy~E~v~eeli~~~t~~Lffl~vk~~il~~~i~~~~E~~~ 132 (596)
T KOG3529|consen 53 YFGLQYTDSKGEPTWLKLDKKVLDQDVPKDSPLNFHFHAKFYPEDVAEELIQDITQHLFFLQVKEAILSDEIYCPPETSV 132 (596)
T ss_pred hcccccccCCCCcchhhccchhhhhhcCCCCCcceeeeeecchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHH
Confidence 4555544 8889999999987777753 3555 999999999997 78887776 899999999999999
Q ss_pred HHHHHHHHhhcCCCCccccCCCcCccccccCCCCC--------chHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCC
Q psy15745 70 LLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQ--------TPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMY 141 (170)
Q Consensus 70 ~Laal~~Q~e~Gd~~~~~~~~~~~yl~~~~~lP~~--------~~~~~~~i~~~h~~~~G~s~~~A~~~yL~~~~~l~~Y 141 (170)
.||||++|+.+|||+.+.|. .+++.....+|.. ...|+.+|.+.|..++||+.++|+++||++++.+|+|
T Consensus 133 ~las~~vqa~~gdy~~~~~~--~~~l~~~~~lP~~~~~q~~~s~~~~e~ri~~~~~~~~~~~re~a~leylki~qdle~y 210 (596)
T KOG3529|consen 133 LLASYAVQAKYGDYDKETHK--VGRLAGDRLLPQRVLDQHKMTPDMWEDRIKEWYAEHRGMTREEAMLEYLKIAQDLEMY 210 (596)
T ss_pred HHHHHHHHHHhccccchhhh--hhccccCcccchhhhhhccccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccccc
Confidence 99999999999999999998 8999888888865 2689999999999999999999999999999999999
Q ss_pred CCcceeecCCCCCeEEEeEcCCeeEEcc
Q psy15745 142 GVVLHPAKDSEGVDIMLGVCASGILVYS 169 (170)
Q Consensus 142 G~~~f~vkd~~~~~~~lgI~~~Gi~v~~ 169 (170)
|+.+|+++++.|..+||||+..|+.+|+
T Consensus 211 gvny~~i~~k~gt~~~lgv~~~gl~~y~ 238 (596)
T KOG3529|consen 211 GVNYFEIKNKKGTDLWLGVDALGLNIYD 238 (596)
T ss_pred ccceeecCCCCCCccccccccCCccccc
Confidence 9999999999999999999999999997
No 5
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=99.89 E-value=3.9e-23 Score=158.27 Aligned_cols=130 Identities=32% Similarity=0.444 Sum_probs=107.3
Q ss_pred hhcccCCCCCcccccC-CCcc-eeeeeeCCCCchHHH----------HHHHHHhhccccccChhHHHHHHHHHHHhhcCC
Q psy15745 15 LVQSELGDYDQEEHKG-NPDY-LREFKFAPNQTPELE----------QRVMELHKTHKLPCSYVTYALLGSYLVQSELGD 82 (170)
Q Consensus 15 ~Wl~~~~~~~~~q~~~-~~~~-~~~vkfy~~~~~~l~----------~~~trdi~~g~l~~~~~~~~~Laal~~Q~e~Gd 82 (170)
.|+++.+++ .++..+ .++. +||++||++++..+. .++.+|+++|++||+.+++++||||.+|+++||
T Consensus 58 ~~l~~~~~l-~~~~~~~~~~~l~fr~r~~~~~~~~~~~d~~~~~~ly~Q~~~di~~g~~~~~~~~~~~Laal~~q~~~gd 136 (207)
T smart00295 58 HWLDPAKTL-LDQDVKSEPLTLYFRVKFYPPDPLQLKEDPTRLNLLYLQVRNDILEGRLPCPEEEALLLAALALQAEFGD 136 (207)
T ss_pred eeCCCccCH-HHhcCCCCCcEEEEEEEEccCCHHHhcchhHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHhcC
Confidence 799998888 555443 3455 999999998754332 234459999999999999999999999999999
Q ss_pred CCccccCCCcCccccccCCCCC--------chHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCCcce
Q psy15745 83 YDQEEHKGNPDYLREFKFAPNQ--------TPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLH 146 (170)
Q Consensus 83 ~~~~~~~~~~~yl~~~~~lP~~--------~~~~~~~i~~~h~~~~G~s~~~A~~~yL~~~~~l~~YG~~~f 146 (170)
++...+. ...+.....++|.. .+.|+++|.+.|+++.|+|+.+|+..||++|++||+||+++|
T Consensus 137 ~~~~~~~-~~~~~~~~~~lP~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~a~~~yl~~~~~lp~fG~~~f 207 (207)
T smart00295 137 YDEELHV-LLKELSLKRFLPKQLLDSEKRTLKEWRERIVSLHKELIGLSPEEAKLKYLELAEKLPTYGVELF 207 (207)
T ss_pred CChHhcC-CccccccceeCChhhhhhccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccccCcccC
Confidence 9987762 03445556778876 367999999999999999999999999999999999999987
No 6
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=99.89 E-value=4.7e-23 Score=146.62 Aligned_cols=98 Identities=32% Similarity=0.542 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhccccccChhHHHHHHHHHHHhhcCCCC-ccccCCCcCccccc-------cCCC--------CCchHHHH
Q psy15745 47 ELEQRVMELHKTHKLPCSYVTYALLGSYLVQSELGDYD-QEEHKGNPDYLREF-------KFAP--------NQTPELEQ 110 (170)
Q Consensus 47 ~l~~~~trdi~~g~l~~~~~~~~~Laal~~Q~e~Gd~~-~~~~~~~~~yl~~~-------~~lP--------~~~~~~~~ 110 (170)
.+-.++.+||++|++||+.+++++||||++|+++||++ ...+. ..++... .++| ....+|++
T Consensus 13 lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~q~~~gd~~~~~~~~--~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~~~~ 90 (126)
T PF00373_consen 13 LLYLQARRDVLQGRLPCSEEDAIKLAALQLQAEYGDYNSEQEHS--SGYIDPEIKEFQLENFIPKAPKLIKKMKQKEWEK 90 (126)
T ss_dssp HHHHHHHHHHHTTSSTS-HHHHHHHHHHHHHHHHTSSTTTTTSS--TTTTTGSHHCTCGHGTSSHHHHHHCCSTHHHHHH
T ss_pred HHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHhcCCCcccccC--cccccccccchhhhhhhhhhHHHHhhhhHHHHHH
Confidence 34456677999999999999999999999999999999 44444 4443321 3788 34579999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCCcce
Q psy15745 111 RVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLH 146 (170)
Q Consensus 111 ~i~~~h~~~~G~s~~~A~~~yL~~~~~l~~YG~~~f 146 (170)
+|.+.|++++|+|+.+|+..||++|++||+||+++|
T Consensus 91 ~I~~~~~~l~~~s~~~a~~~fl~~~~~~p~yG~~~F 126 (126)
T PF00373_consen 91 RILEQHKKLRGMSPEEAKLQFLQICQSLPTYGSTFF 126 (126)
T ss_dssp HHHHHHHHTTT--HHHHHHHHHHHHCTSTTTTEEEE
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCceeC
Confidence 999999999999999999999999999999999998
No 7
>KOG3531|consensus
Probab=99.86 E-value=3.3e-23 Score=180.72 Aligned_cols=165 Identities=36% Similarity=0.552 Sum_probs=150.1
Q ss_pred CCCCchhHHhh---hchhhcccCCCCCcccccCC--CcceeeeeeCCCCchHHHHHHHH---------HhhccccccChh
Q psy15745 1 LPCSYVTYALL---GSYLVQSELGDYDQEEHKGN--PDYLREFKFAPNQTPELEQRVME---------LHKTHKLPCSYV 66 (170)
Q Consensus 1 l~c~~~~~~~~---g~~~Wl~~~~~~~~~q~~~~--~~~~~~vkfy~~~~~~l~~~~tr---------di~~g~l~~~~~ 66 (170)
++|+||++.+. +...|+|++|++ -+||+.. +..+|.||||+++|..|.++.|| |+..|++.|..-
T Consensus 76 ~e~dyfglef~~~~~~~~wld~~kpi-~rqi~~~~~~~~~~~vkf~~p~~~~l~ee~trylf~~q~k~dl~~G~l~c~d~ 154 (1036)
T KOG3531|consen 76 VECDYFGLEFQDINGNHCWLDLEKPI-LRQIRRPKDVVLRFVVKFFPPDPIQLQEEYTRYLFALQIKRDLALGRLTCNDT 154 (1036)
T ss_pred eeccccceeeccccCceEEecccchH-HHHhcCccchhhheeecccCCCccccchhHHHHhhhhccccccccCCccCCCc
Confidence 58999999854 789999999999 7899762 22299999999999999999888 999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCccccCCCcCccccccCCCCCchHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCCcce
Q psy15745 67 TYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLH 146 (170)
Q Consensus 67 ~~~~Laal~~Q~e~Gd~~~~~~~~~~~yl~~~~~lP~~~~~~~~~i~~~h~~~~G~s~~~A~~~yL~~~~~l~~YG~~~f 146 (170)
+|..|+++++|.+.|||+.. .. ..+++...|+|.+ ...+++|++-|+.+.|++++++.++-|.+|+++++||++++
T Consensus 155 ta~lLss~~~qse~gdf~~~-~d--~~~l~~~~~~p~q-~~~~~ki~~~h~~hig~tpaesdl~~le~ar~~~~yg~~~h 230 (1036)
T KOG3531|consen 155 TAALLSSHIVQSEIGDFDEY-LD--REHLAHTRYLPNQ-DELEKKIMEFHQKHIGQTPAESDFQLLEIARRLDMYGIRLH 230 (1036)
T ss_pred hhhhhhcccccccCCchhcc-cc--ceeeeeeecCchH-HHHHHHHHHhhhhhhccCchhhhHHHHHHHHHHhhhccccc
Confidence 99999999999999999432 22 5789999999999 78899999999999999999999999999999999999999
Q ss_pred eecCCCCCeEEEeEcCCeeEEccC
Q psy15745 147 PAKDSEGVDIMLGVCASGILVYSE 170 (170)
Q Consensus 147 ~vkd~~~~~~~lgI~~~Gi~v~~~ 170 (170)
.++|.+|..+-+++...||.|++.
T Consensus 231 ~a~D~Eg~~~~lav~hmgi~Vfr~ 254 (1036)
T KOG3531|consen 231 PAKDREGTKINLAVAHMGILVFRG 254 (1036)
T ss_pred hhhhcccchHHHHHHhhhhHHHhc
Confidence 999999999999999999999873
No 8
>KOG4261|consensus
Probab=99.56 E-value=4.6e-16 Score=135.54 Aligned_cols=151 Identities=19% Similarity=0.296 Sum_probs=122.7
Q ss_pred hhchhhcccCCCCCcccccCCCcc-eeeeeeCCCCch-------H---HHHHHHHHhhccccccChhHHHHHHHHHHHhh
Q psy15745 11 LGSYLVQSELGDYDQEEHKGNPDY-LREFKFAPNQTP-------E---LEQRVMELHKTHKLPCSYVTYALLGSYLVQSE 79 (170)
Q Consensus 11 ~g~~~Wl~~~~~~~~~q~~~~~~~-~~~vkfy~~~~~-------~---l~~~~trdi~~g~l~~~~~~~~~Laal~~Q~e 79 (170)
....+|+|..+++ .+|--+..++ .+|-|||-.+-+ + |..+.+.+|+.|.+|++.+.|.++|+++.|+.
T Consensus 167 d~el~wld~~rtl-reqgide~et~llRrk~f~sd~nvdsrdpvqlnllyvQ~rD~il~g~hpv~~~kA~e~a~~qshiq 245 (1003)
T KOG4261|consen 167 DDELNWLDHSRTL-REQGIDEEETLLLRRKFFFSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFEKACEFAGFQSHIQ 245 (1003)
T ss_pred chhhhhHHHhHHH-HhcCccHHHHHHHHHHHhhccccccccchHHhhhhhhhhhcccccCcCchhHHHHHHHhccccccc
Confidence 3567999999999 5554445566 777777655321 2 22233349999999999999999999999999
Q ss_pred cCCCCccccCCCcCccccccCCCCC--chHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCCcceeecCC-----C
Q psy15745 80 LGDYDQEEHKGNPDYLREFKFAPNQ--TPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDS-----E 152 (170)
Q Consensus 80 ~Gd~~~~~~~~~~~yl~~~~~lP~~--~~~~~~~i~~~h~~~~G~s~~~A~~~yL~~~~~l~~YG~~~f~vkd~-----~ 152 (170)
||+++.++|. +++..+.++|.. ....+.+|+..|+.+.||+..+|+..|-++|+.|++||++||-||-+ .
T Consensus 246 ~g~~~~~k~k---~~ld~kd~lpk~y~k~k~ekKif~~~k~~~~~sei~ak~~y~k~~r~l~tygvtff~VKek~~gknk 322 (1003)
T KOG4261|consen 246 FGPHNEDKHK---GFLDLKDFLPKEYVKQKGEKKIFQAHKNCGGMSEIDAKVKYVKLARSLKTYGVTFFLVKEKMKGKNK 322 (1003)
T ss_pred cCCchhhccc---cchhccccChHHHhccccchhhhhhhhhhcchhHHHHHHHHHHHhccccccceEEEEehhhccCccc
Confidence 9999999997 788888899976 23339999999999999999999999999999999999999999653 3
Q ss_pred CCeEEEeEcCCee
Q psy15745 153 GVDIMLGVCASGI 165 (170)
Q Consensus 153 ~~~~~lgI~~~Gi 165 (170)
+++.+|||+...+
T Consensus 323 lVprlLgv~K~sv 335 (1003)
T KOG4261|consen 323 LVPRLLGVTKESV 335 (1003)
T ss_pred ccchhhhhhHHhh
Confidence 5688899987543
No 9
>KOG0248|consensus
Probab=99.26 E-value=3.2e-12 Score=110.82 Aligned_cols=114 Identities=21% Similarity=0.254 Sum_probs=93.9
Q ss_pred HHHhhccccccChhHHHHHHHHHHHhhcCCCCccccCCCcCccc--cccCCCCC------chHHHHHHHHHHHhccCCCH
Q psy15745 53 MELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLR--EFKFAPNQ------TPELEQRVMELHKTHKGQTP 124 (170)
Q Consensus 53 trdi~~g~l~~~~~~~~~Laal~~Q~e~Gd~~~~~~~~~~~yl~--~~~~lP~~------~~~~~~~i~~~h~~~~G~s~ 124 (170)
.|-|..||+|.+.+.+..+|||..|.++||-+...-. .-|. ..+|.|.. .+.+..+|...|..++|+|+
T Consensus 704 s~eIv~gr~p~~~~l~e~~AaL~aq~~~gd~~~~~k~---q~l~qv~~rFyP~ryrdga~~eqLR~~l~t~W~~L~G~S~ 780 (936)
T KOG0248|consen 704 SEEIVNGRIPLSNQLCESLAALYAQMVFGDANQSLSD---QQFEFISQRFYPSKMLDVACIKSLRLQINSNWSELIGMSE 780 (936)
T ss_pred hHHhhcCcCcchHHHHHHHHHHHHHHhhccccccchH---HHHHHHHHHhChhhhhccCCHHHHHHHHhhhHHHHhCCCh
Confidence 3489999999999999999999999999997633222 2221 13566765 25688999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcceeecC-----CCCCeEEEeEcCCeeEEcc
Q psy15745 125 AEAELNYLDNAKKLSMYGVVLHPAKD-----SEGVDIMLGVCASGILVYS 169 (170)
Q Consensus 125 ~~A~~~yL~~~~~l~~YG~~~f~vkd-----~~~~~~~lgI~~~Gi~v~~ 169 (170)
.|+..-||.+|++||+||+.+|.++- ....-+||+|+.+||.+.+
T Consensus 781 ~eCvRIYLTVARKWPFFGAKLF~A~P~~~SS~~~tfiWlAVnEDGvSlLd 830 (936)
T KOG0248|consen 781 NECVRIYLTVARKWPFFGAKLFEASPMRTSSERKTFIWLAVNEDGVSLLD 830 (936)
T ss_pred hHheeeeeeecccCcccchhhhhcCCCccccccceeEEEEEcCCcceecc
Confidence 99999999999999999999999853 3346899999999999864
No 10
>KOG4371|consensus
Probab=98.97 E-value=4.2e-10 Score=101.40 Aligned_cols=136 Identities=18% Similarity=0.264 Sum_probs=111.3
Q ss_pred Ccc-eeeeeeCCCCchHHHHHHH---H---------HhhccccccChhHHHHHHHHHHHhhcCCCCccccCCCcCccccc
Q psy15745 32 PDY-LREFKFAPNQTPELEQRVM---E---------LHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREF 98 (170)
Q Consensus 32 ~~~-~~~vkfy~~~~~~l~~~~t---r---------di~~g~l~~~~~~~~~Laal~~Q~e~Gd~~~~~~~~~~~yl~~~ 98 (170)
|.. .++|+||+..-.-+..+++ | ++++.+..-..+-+.+||++++|+++|+.+...+. .+|....
T Consensus 587 P~~~h~rv~~y~s~l~~is~~~akltrse~Y~~~q~qvLeeq~V~~~da~f~laaFalqadsGNr~~n~~~--gdysdP~ 664 (1332)
T KOG4371|consen 587 PYVLHLRVKFYPSILDFISTDVAKLTRSELYLQCQRQVLEEQIVPKRDAAFELAAFALQADSGNRPPNPVI--GDYSDPQ 664 (1332)
T ss_pred CeEEEEEEEeccccCcchhhhhhhhhhhHHHHhhhHHHHhhcccccchhhhhHHhhhhhhhcCCCCCCccc--cccCChh
Confidence 566 9999999986543333333 3 88888877778889999999999999999998887 7898888
Q ss_pred cCCCCCc------hHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCCcceee-cC----------CCCCeEEEeEc
Q psy15745 99 KFAPNQT------PELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPA-KD----------SEGVDIMLGVC 161 (170)
Q Consensus 99 ~~lP~~~------~~~~~~i~~~h~~~~G~s~~~A~~~yL~~~~~l~~YG~~~f~v-kd----------~~~~~~~lgI~ 161 (170)
+++|..- .-+...+.+.|....|.+..+|...|+++++..+.|+++++++ ++ ..+.+.|+|+.
T Consensus 665 hY~ps~yss~e~q~li~~~~p~~Hg~~~~t~aseah~kYV~~p~r~pd~e~h~qp~f~~kP~sar~~kt~~~~pp~~gp~ 744 (1332)
T KOG4371|consen 665 HYLPSKYSSFEDQSLIKNILPELHGHYAGTRASEAHHKYVQIPQRHPDFEAHVQPVFRTKPTSARPFKTDTGSPPWIGPM 744 (1332)
T ss_pred hhcccceecccchhhhhhccccccCchhhcchhhccCcceecccCCCCccceeccccCCCCcccCcCcCCCCCCcccccc
Confidence 8888761 2345555578888899999999999999999999999999986 22 22569999999
Q ss_pred CCeeEEcc
Q psy15745 162 ASGILVYS 169 (170)
Q Consensus 162 ~~Gi~v~~ 169 (170)
++||.||.
T Consensus 745 prgIsi~~ 752 (1332)
T KOG4371|consen 745 PRGISIYE 752 (1332)
T ss_pred ccceeccc
Confidence 99999986
No 11
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=98.58 E-value=5e-08 Score=65.94 Aligned_cols=31 Identities=61% Similarity=1.140 Sum_probs=29.8
Q ss_pred CCCCcceeecCCCCCeEEEeEcCCeeEEccC
Q psy15745 140 MYGVVLHPAKDSEGVDIMLGVCASGILVYSE 170 (170)
Q Consensus 140 ~YG~~~f~vkd~~~~~~~lgI~~~Gi~v~~~ 170 (170)
+||+++|+|+|++|.+++|||++.||.||++
T Consensus 1 ~YGv~~~~vkd~~g~~~~lGV~~~Gi~v~~~ 31 (92)
T cd00836 1 MYGVDLHPVKDKKGTELLLGVTAEGILVYDD 31 (92)
T ss_pred CCCeeeEEEECCCCCeEEEEEeCCCcEEecC
Confidence 6999999999999999999999999999985
No 12
>KOG3552|consensus
Probab=98.22 E-value=3.1e-06 Score=76.42 Aligned_cols=126 Identities=21% Similarity=0.286 Sum_probs=88.9
Q ss_pred eeeeeeCCCCchHHHHH-----------HHHHhhccccccC--hhHHHHHHHHHHHh-hcCCCCccccCCCcCcccc---
Q psy15745 35 LREFKFAPNQTPELEQR-----------VMELHKTHKLPCS--YVTYALLGSYLVQS-ELGDYDQEEHKGNPDYLRE--- 97 (170)
Q Consensus 35 ~~~vkfy~~~~~~l~~~-----------~trdi~~g~l~~~--~~~~~~Laal~~Q~-e~Gd~~~~~~~~~~~yl~~--- 97 (170)
.|||-|-|.+|.+|... ...||.+.|+-.. .+.|+.||||.++. .+-+-.+.+.+ -+|+..
T Consensus 264 LFRItFVPkdp~dLlqrDpvAfeYLYlQsCnDV~QERFapElk~elALRLAALhm~~~~~a~~q~qKis--lKyIEkewG 341 (1298)
T KOG3552|consen 264 LFRITFVPKDPADLLQRDPVAFEYLYLQSCNDVNQERFAPELKPELALRLAALHMHQHALANNQAQKIS--LKYIEKEWG 341 (1298)
T ss_pred EEEEEeccCCHHHHHhcCchHHHHHHHhhhhhHhHhhcccccchHHHHHHHHHHHHHHHHhhccccchh--hhhhhhhhc
Confidence 89999999999765432 1229999999876 58999999999874 34443444554 678764
Q ss_pred -ccCCCCC------chHHHHHHHHHHHhcc-------CCCHHHHHHHHHHHHhcCCCCCCcceeecCCCC---CeEEEeE
Q psy15745 98 -FKFAPNQ------TPELEQRVMELHKTHK-------GQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEG---VDIMLGV 160 (170)
Q Consensus 98 -~~~lP~~------~~~~~~~i~~~h~~~~-------G~s~~~A~~~yL~~~~~l~~YG~~~f~vkd~~~---~~~~lgI 160 (170)
++|+|.. ..++.+.|...-+... -++..+|+++||++...|+.||...|.+.-..| ..+.|=|
T Consensus 342 lE~Fvp~sll~~MK~K~ikkaiSh~lK~Nqnl~~p~kklt~lQaklhYL~ila~L~sYGgr~F~atl~~~~~~se~~LLV 421 (1298)
T KOG3552|consen 342 LERFVPVSLLEGMKRKEIKKAISHFLKLNQNLGSPSKKLTQLQAKLHYLDILASLPSYGGRCFSATLREGDRESERVLLV 421 (1298)
T ss_pred hhhcccHHHHhhhhHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHhhhhhccchhhhhhhhhcccceeEEEEe
Confidence 3788875 2466666655444331 257778999999999999999999999854333 4444444
Q ss_pred cC
Q psy15745 161 CA 162 (170)
Q Consensus 161 ~~ 162 (170)
++
T Consensus 422 gp 423 (1298)
T KOG3552|consen 422 GP 423 (1298)
T ss_pred cc
Confidence 44
No 13
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=98.15 E-value=3.2e-05 Score=51.57 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=57.1
Q ss_pred HHHhhccccccChhHHHHHHHHHHHhhcCCCCccccCCCcCccccccCCCCCchHHHHHHHHHHHhccCCCHHHHHHHHH
Q psy15745 53 MELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYL 132 (170)
Q Consensus 53 trdi~~g~l~~~~~~~~~Laal~~Q~e~Gd~~~~~~~~~~~yl~~~~~lP~~~~~~~~~i~~~h~~~~G~s~~~A~~~yL 132 (170)
+..|.+..-..+.++-++|=||--||..||++... ++.+ .-..+.=.+.|+++.|||+++|+..|+
T Consensus 9 ~~~v~~~~~~~~~~~~L~lYalyKQAt~G~~~~~~----P~~~----------d~~~~~K~~AW~~l~~ms~~eA~~~YV 74 (85)
T cd00435 9 AEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNTER----PGMF----------DLKGRAKWDAWNSLKGMSKEDAMKAYI 74 (85)
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHHHhccCCCCCCC----CCcc----------cHhhHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33454555667889999999999999999997432 2222 112344467999999999999999999
Q ss_pred HHHhc-CCCCC
Q psy15745 133 DNAKK-LSMYG 142 (170)
Q Consensus 133 ~~~~~-l~~YG 142 (170)
+++.+ +|.||
T Consensus 75 ~~~~~l~~~~~ 85 (85)
T cd00435 75 AKVEELIAKYA 85 (85)
T ss_pred HHHHHHhhccC
Confidence 99977 57776
No 14
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=97.94 E-value=4.9e-05 Score=50.79 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=47.0
Q ss_pred cccChhHHHHHHHHHHHhhcCCCCccccCCCcCccccccCCCCCchHHHHHHHHHHHhccCCCHHHHHHHHHHHHhc
Q psy15745 61 LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKK 137 (170)
Q Consensus 61 l~~~~~~~~~Laal~~Q~e~Gd~~~~~~~~~~~yl~~~~~lP~~~~~~~~~i~~~h~~~~G~s~~~A~~~yL~~~~~ 137 (170)
.+.+.++-+.|=||--|+..||++.... .++ .-....=.+.|++++|||+++|+..|++++.+
T Consensus 19 ~~~~~~~~L~LYalyKQAt~Gd~~~~~P----~~~----------d~~~~~K~~AW~~l~gms~~eA~~~Yi~~v~~ 81 (87)
T PF00887_consen 19 SQLSNDDKLELYALYKQATHGDCDTPRP----GFF----------DIEGRAKWDAWKALKGMSKEEAMREYIELVEE 81 (87)
T ss_dssp STS-HHHHHHHHHHHHHHHTSS--S-CT----TTT----------CHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcCCCC----cch----------hHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999999983332 222 12233446799999999999999999999865
No 15
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=97.46 E-value=2.9e-05 Score=50.69 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=28.5
Q ss_pred CCchhHHh----hhchhhcccCCCCCcccccC--CCcc-eeeeeeCC
Q psy15745 3 CSYVTYAL----LGSYLVQSELGDYDQEEHKG--NPDY-LREFKFAP 42 (170)
Q Consensus 3 c~~~~~~~----~g~~~Wl~~~~~~~~~q~~~--~~~~-~~~vkfy~ 42 (170)
+.+|++.. .+..+|+++.+++ .+|.++ .|+. +|||||||
T Consensus 35 ~~~FgL~~~~~~~~~~~wL~~~k~l-~~q~~~~~~~~~l~frvkfy~ 80 (80)
T PF09379_consen 35 KEYFGLQYQVDKDGEHHWLDLDKKL-KKQLKKNNPPFTLYFRVKFYP 80 (80)
T ss_dssp GGGEEEEE-EBTTSSEEEE-SSSBG-GGSTBTSSSSEEEEEEESS--
T ss_pred ccEEEEEEeecCCCcceeccCcccH-HHHcCCCCCCEEEEEEEEECC
Confidence 45566665 4789999999999 777776 5677 99999997
No 16
>KOG3727|consensus
Probab=97.42 E-value=0.00024 Score=61.49 Aligned_cols=106 Identities=16% Similarity=0.227 Sum_probs=67.3
Q ss_pred HhhccccccC----hhHHHHHHHHHHHhhcCCCCccccC--CCcCccccccCCCCC------chHHHHHHHHHHHhccCC
Q psy15745 55 LHKTHKLPCS----YVTYALLGSYLVQSELGDYDQEEHK--GNPDYLREFKFAPNQ------TPELEQRVMELHKTHKGQ 122 (170)
Q Consensus 55 di~~g~l~~~----~~~~~~Laal~~Q~e~Gd~~~~~~~--~~~~yl~~~~~lP~~------~~~~~~~i~~~h~~~~G~ 122 (170)
.-..|+--.+ .|+---|+-|.+|-.-+. ...+. .++.=+....|+.+. ...+.++|.+.|+..+.|
T Consensus 456 LASKGktMADSSY~sEV~sIlsfL~MQ~~n~g--~~q~~~~~~~~d~np~~~vSPr~~rk~ksKQ~~~RILEAHqNVaQl 533 (664)
T KOG3727|consen 456 LASKGKTMADSSYQSEVQSILSFLKMQRPNSG--SRQAAPVKLPRDVNPECYVSPRYVRKLKSKQITQRILEAHQNVAQL 533 (664)
T ss_pred HhhcCCccccccccHHHHHHHHHHHhcCCCCC--CCcCCcccCcCCCCchhhcCHHHHHHHhhHHHHHHHHHHhhhHhhh
Confidence 3444666553 466667777777764442 11121 001111222222211 245899999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcceeecC-CCCCeEEEeEcC
Q psy15745 123 TPAEAELNYLDNAKKLSMYGVVLHPAKD-SEGVDIMLGVCA 162 (170)
Q Consensus 123 s~~~A~~~yL~~~~~l~~YG~~~f~vkd-~~~~~~~lgI~~ 162 (170)
|-.||++.||+.=|+||.||+++|-|+= ...++=+|||..
T Consensus 534 sl~EAKLrfIQAWQSLPeFGityfivRFkGsrKeEllGVA~ 574 (664)
T KOG3727|consen 534 SLTEAKLRFIQAWQSLPEFGITYFIVRFKGSRKEELLGVAY 574 (664)
T ss_pred hhHHHHHHHHHHHhhccccCcEEEEEEecCcchHHHHhhhh
Confidence 9999999999999999999999998842 222233455543
No 17
>PTZ00458 acyl CoA binding protein; Provisional
Probab=97.36 E-value=0.0028 Score=42.61 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=50.6
Q ss_pred ccChhHHHHHHHHHHHhhcCCCCccccCCCcCccccccCCCCCchHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcC-CC
Q psy15745 62 PCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKKL-SM 140 (170)
Q Consensus 62 ~~~~~~~~~Laal~~Q~e~Gd~~~~~~~~~~~yl~~~~~lP~~~~~~~~~i~~~h~~~~G~s~~~A~~~yL~~~~~l-~~ 140 (170)
+.+.++-++|=||--|+..||++.... +.+ .-..+.=.+.|.++.|||+++|+..|++++.++ |.
T Consensus 20 ~~s~d~~L~lYalyKQAt~G~c~~~~P----~~~----------d~~~raKw~AW~~l~~ms~~eA~~~YI~l~~~l~~~ 85 (90)
T PTZ00458 20 NLSVEIKLDLYKYYKQSTVGNCNIKEP----SMF----------KYQDRKKYEAWKSIENLNREDAKKRYVEIVTELFPN 85 (90)
T ss_pred CCCHHHHHHHHHHHhhhccCCCCCCCC----Ccc----------cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 568899999999999999999875322 222 112233356999999999999999999999875 54
Q ss_pred C
Q psy15745 141 Y 141 (170)
Q Consensus 141 Y 141 (170)
|
T Consensus 86 w 86 (90)
T PTZ00458 86 W 86 (90)
T ss_pred c
Confidence 4
No 18
>KOG3531|consensus
Probab=97.01 E-value=0.00041 Score=62.58 Aligned_cols=152 Identities=3% Similarity=-0.302 Sum_probs=112.9
Q ss_pred chhhcccCCCCCcccc--cCCCcc-eeeeeeCCCCchHHHHHHHH---------HhhccccccChhHHHHHHHHHHHhhc
Q psy15745 13 SYLVQSELGDYDQEEH--KGNPDY-LREFKFAPNQTPELEQRVME---------LHKTHKLPCSYVTYALLGSYLVQSEL 80 (170)
Q Consensus 13 ~~~Wl~~~~~~~~~q~--~~~~~~-~~~vkfy~~~~~~l~~~~tr---------di~~g~l~~~~~~~~~Laal~~Q~e~ 80 (170)
-+-|.|.+|.-. .+. +.+..+ .+..||+..++..|.+..++ +...|.|.|+.+.+..-+.+..|+--
T Consensus 229 ~h~a~D~Eg~~~-~lav~hmgi~Vfr~~tkinTf~wAkirklsfkrk~fLiklhp~~~g~~qdt~ef~~~~rd~ck~fwk 307 (1036)
T KOG3531|consen 229 LHPAKDREGTKI-NLAVAHMGILVFRGLTKINTFNWAKIRKLSFKRKRFLIKLHPDSYGYYKDTLEFLMASRDECKNFWK 307 (1036)
T ss_pred cchhhhcccchH-HHHHHhhhhHHHhcceeccCCCHHHHHHHHHHHHhhhheeccccccchhhhHHHHHHhHHHHHHHHh
Confidence 355777777762 322 223334 88999999999999887766 66779999999999999999999999
Q ss_pred CCCCccccCCCcCccccccCCCCCchHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCCcceeecCCCCCeEEEeE
Q psy15745 81 GDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGV 160 (170)
Q Consensus 81 Gd~~~~~~~~~~~yl~~~~~lP~~~~~~~~~i~~~h~~~~G~s~~~A~~~yL~~~~~l~~YG~~~f~vkd~~~~~~~lgI 160 (170)
|++..+.-.. --|+... ..|...-...+.+...|+..+|+.+.+++..-++.+.+.+.||++.+..++..+....+..
T Consensus 308 ~cve~h~ffr-~~~~~~~-k~k~~~~S~gssfrysgrtqkq~~~y~re~~~k~~~f~r~~~~~~s~~r~~~ss~~~l~sd 385 (1036)
T KOG3531|consen 308 ICVEHHAFFR-LVEEPKP-KPKTVFFSKGSSFRYSGRTQKQLLDYVREGGKKREPFERKHSKSHSTRRGLYSSPYGLVSD 385 (1036)
T ss_pred ccccccchhh-hhcccCC-CCCceeecccchhhhcCcchhccchhhhhcccccchhhcccccccccchhhccCCchhhhh
Confidence 9876543220 1122222 3333334457888999999999999999999999999999999999988877766666666
Q ss_pred cCCeeEE
Q psy15745 161 CASGILV 167 (170)
Q Consensus 161 ~~~Gi~v 167 (170)
-+.|+..
T Consensus 386 ~~~~~~~ 392 (1036)
T KOG3531|consen 386 VPEQHRN 392 (1036)
T ss_pred ccccccc
Confidence 6666543
No 19
>KOG4257|consensus
Probab=96.67 E-value=0.0039 Score=55.52 Aligned_cols=136 Identities=15% Similarity=0.194 Sum_probs=99.9
Q ss_pred Ccc-eeeeeeCCCCchHHHHH-----------HHHHhhcc-ccccChhHHHHHHHHHHHhhcCCCCccccCCC--cCccc
Q psy15745 32 PDY-LREFKFAPNQTPELEQR-----------VMELHKTH-KLPCSYVTYALLGSYLVQSELGDYDQEEHKGN--PDYLR 96 (170)
Q Consensus 32 ~~~-~~~vkfy~~~~~~l~~~-----------~trdi~~g-~l~~~~~~~~~Laal~~Q~e~Gd~~~~~~~~~--~~yl~ 96 (170)
.|. -+|+||.|.+.-+|..+ +..|..+. -..++.+.|++||+|-+.-.|-+++-....+. -++|.
T Consensus 91 ewr~elr~Ry~P~~~~El~~eD~st~~Y~~~Qv~~df~q~~a~~~s~evAlql~cL~vrr~Fk~~~~na~~kksh~e~le 170 (974)
T KOG4257|consen 91 EWRLELRMRYMPQSVYELQAEDSSTFVYLHEQVVDDFFQHVAWRSSVEVALQLACLKVRRDFKEHQHNAPGKKSHLEDLE 170 (974)
T ss_pred hheeeeeeeeCcHHHHHHHhcccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCcccCCCccccHHHHH
Confidence 355 89999999987655432 22233332 22557899999999999999998764442211 23443
Q ss_pred cc----cCCCCC------chHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCCcceeec--CCCCCeEEEeEcCC-
Q psy15745 97 EF----KFAPNQ------TPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAK--DSEGVDIMLGVCAS- 163 (170)
Q Consensus 97 ~~----~~lP~~------~~~~~~~i~~~h~~~~G~s~~~A~~~yL~~~~~l~~YG~~~f~vk--d~~~~~~~lgI~~~- 163 (170)
.+ .|+|.+ ...+.+.|..-++++..+++.|....|+.+-...-.+-++.|.+. ...+..+-|.|++.
T Consensus 171 kevglksffPksl~~~~Kpk~lkKliqq~fkkfan~n~eE~i~rff~lL~~v~~~d~E~fk~~L~s~WnisveLvvGPh~ 250 (974)
T KOG4257|consen 171 KEVGLKSFFPKSLHNPFKPKHLKKLIQQTFKKFANLNPEESIIRFFALLLEVYKFDVELFKCSLGSGWNISVELVVGPHT 250 (974)
T ss_pred HHhhHHhhChHhhhcccChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhHHheeeecccccceeEEEEecCcc
Confidence 32 577765 367889999999999999999999999999887777888888874 45567888999988
Q ss_pred eeEE
Q psy15745 164 GILV 167 (170)
Q Consensus 164 Gi~v 167 (170)
||.-
T Consensus 251 Gisy 254 (974)
T KOG4257|consen 251 GISY 254 (974)
T ss_pred ccee
Confidence 8863
No 20
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=96.65 E-value=0.017 Score=37.37 Aligned_cols=75 Identities=19% Similarity=0.167 Sum_probs=53.8
Q ss_pred HHHHHhhccccccChhHHHHHHHHHHHhhcCCCCccccCCCcCccccccCCCCCchHHHHHHHHHHHhccCCCHHHHHHH
Q psy15745 51 RVMELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELN 130 (170)
Q Consensus 51 ~~trdi~~g~l~~~~~~~~~Laal~~Q~e~Gd~~~~~~~~~~~yl~~~~~lP~~~~~~~~~i~~~h~~~~G~s~~~A~~~ 130 (170)
+...+|-+-.-..+.++.+.|=||.-|+..||.+..+.. ++.- . -+-=.+.|..++|.|+++|+..
T Consensus 8 qa~~dV~~L~~kP~~d~LLkLYAL~KQ~s~GD~~~ekPG----~~d~---~-------gr~K~eAW~~LKGksqedA~qe 73 (87)
T COG4281 8 QAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDGEKPG----FFDI---V-------GRYKYEAWAGLKGKSQEDARQE 73 (87)
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHhccccccCCCCCC----cccc---c-------cchhHHHHhhccCccHHHHHHH
Confidence 333455554444567889999999999999998766554 3311 1 1112568999999999999999
Q ss_pred HHHHHhcCC
Q psy15745 131 YLDNAKKLS 139 (170)
Q Consensus 131 yL~~~~~l~ 139 (170)
||.++..|.
T Consensus 74 YialVeeLk 82 (87)
T COG4281 74 YIALVEELK 82 (87)
T ss_pred HHHHHHHHH
Confidence 999987754
No 21
>KOG3530|consensus
Probab=96.34 E-value=0.0052 Score=53.74 Aligned_cols=65 Identities=46% Similarity=0.750 Sum_probs=52.3
Q ss_pred CCCCchhHHhhhchhhcccCCCCCcccccCCCcceeeeeeCCCCchHHHHHHHHHh--hccccccChhH
Q psy15745 1 LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELH--KTHKLPCSYVT 67 (170)
Q Consensus 1 l~c~~~~~~~~g~~~Wl~~~~~~~~~q~~~~~~~~~~vkfy~~~~~~l~~~~trdi--~~g~l~~~~~~ 67 (170)
|+|++.+||.+|+.+.|.+.||+++.. +.+- +...+||-|++.++|+.+|.+.. ++|.-|...|.
T Consensus 120 L~Cp~~~AaeLaAl~lQsELGDYn~~~-Ht~~-yVSefRf~p~Qte~LE~~I~e~hK~~rGqspaqAEl 186 (616)
T KOG3530|consen 120 LYCPFETAAELAALILQSELGDYNEEE-HTGG-YVSEFRFLPNQTEELEERIFELHKELRGQSPAQAEL 186 (616)
T ss_pred CCCchhhHHHHHHHHHHHHhcCCChhh-cccc-ceeeeEecccccHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 799999999999999999999996444 3322 35788999999999999988833 45888876543
No 22
>KOG0817|consensus
Probab=96.31 E-value=0.015 Score=42.30 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=54.7
Q ss_pred cChhHHHHHHHHHHHhhcCCCCccccCCCcCccccccCCCCCchHHHHHHHHHHHhccCCCHHHHHHHHHHHHhc-CCCC
Q psy15745 63 CSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKK-LSMY 141 (170)
Q Consensus 63 ~~~~~~~~Laal~~Q~e~Gd~~~~~~~~~~~yl~~~~~lP~~~~~~~~~i~~~h~~~~G~s~~~A~~~yL~~~~~-l~~Y 141 (170)
.+.++.++|=||-=||..||.+..... ++. ...+.=.+.|..+.|||+++|+..|+.+..+ .+.|
T Consensus 23 p~~ee~L~lYglyKQAt~G~~~~~kPg----~~d----------~~~k~Kw~AW~~l~~~s~~eA~~~Yv~~~~~l~~~~ 88 (142)
T KOG0817|consen 23 PSNEELLKLYGLYKQATVGDCNTPKPG----FFD----------EEGKAKWQAWNSLGGMSKEEAMEAYVEKVEELIPKY 88 (142)
T ss_pred CCHHHHHHHHHHHHhhccCCCCCCCCc----hhh----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999988765443 331 2233446679999999999999999999876 6777
Q ss_pred CCccee
Q psy15745 142 GVVLHP 147 (170)
Q Consensus 142 G~~~f~ 147 (170)
+...=.
T Consensus 89 ~~~~~~ 94 (142)
T KOG0817|consen 89 GAEAET 94 (142)
T ss_pred hccccc
Confidence 765443
No 23
>KOG4371|consensus
Probab=95.73 E-value=0.0039 Score=57.67 Aligned_cols=52 Identities=10% Similarity=0.015 Sum_probs=40.1
Q ss_pred eeeeeeCCCCchHHHHHHHH---------Hhh---ccccccChhHHHHHHHHHHHhhcCCCCccc
Q psy15745 35 LREFKFAPNQTPELEQRVME---------LHK---THKLPCSYVTYALLGSYLVQSELGDYDQEE 87 (170)
Q Consensus 35 ~~~vkfy~~~~~~l~~~~tr---------di~---~g~l~~~~~~~~~Laal~~Q~e~Gd~~~~~ 87 (170)
+|||+||.+++-.|.....| |++ -+| +++++.++.+|++++|.++||-.+..
T Consensus 119 ~frv~~yi~~~~~l~~~~~r~~yylql~~n~l~~~apr-~~~e~a~~~~a~lalq~d~g~~~~g~ 182 (1332)
T KOG4371|consen 119 EFRVSGYIRNNISLAASPGRKSYYLQLFTNTLAPVAPR-PAPEKAAEEYARLALQNDFGEEEEGE 182 (1332)
T ss_pred EEEEEEeecCceeccCCCCccchhhhhhhhhhccccCC-cchHHHHHHHHhhhhcCccCcCCccc
Confidence 99999999998655543322 343 367 88899999999999999999965443
No 24
>KOG4335|consensus
Probab=92.32 E-value=0.092 Score=45.41 Aligned_cols=117 Identities=14% Similarity=-0.023 Sum_probs=82.9
Q ss_pred HHHHHHhhccccccChhHHHHHHHHHHHhhcCCCCccccCCCcCccccc--cCCCC-Cc-----hHH-HHHHHHHHHhc-
Q psy15745 50 QRVMELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREF--KFAPN-QT-----PEL-EQRVMELHKTH- 119 (170)
Q Consensus 50 ~~~trdi~~g~l~~~~~~~~~Laal~~Q~e~Gd~~~~~~~~~~~yl~~~--~~lP~-~~-----~~~-~~~i~~~h~~~- 119 (170)
++.+.+++.|+|.-.....+.+|...++.-.+.++..+|+ ...+..+ ...|. .+ .-| +..+...++..
T Consensus 355 ~eaR~n~L~Gfy~~~~~k~v~va~i~l~~vhv~~Ss~Kh~--~~vl~lEelk~~~~t~~~~~~~~~wlef~~~~e~kn~n 432 (558)
T KOG4335|consen 355 HEARDNPLQGFYHRGGRKSVSVASISLEGVHVVDSSEKHV--LLVLNLEELKSWDHTSPEEEEPILWLEFDIDSEYKNVN 432 (558)
T ss_pred hhhhhhhhccccccCCceeeehhhhhcccceeeccccccc--hhcccHHHhcccCCCCChhhcchhhhhhhhhccccCcc
Confidence 4444499999999999999999999999999999888887 6555433 32332 22 123 33355555543
Q ss_pred --cCCCHHHHHH--HHHHHHhcCCCCCCcceeecC--------CCCCeEEEeEcCCeeEEcc
Q psy15745 120 --KGQTPAEAEL--NYLDNAKKLSMYGVVLHPAKD--------SEGVDIMLGVCASGILVYS 169 (170)
Q Consensus 120 --~G~s~~~A~~--~yL~~~~~l~~YG~~~f~vkd--------~~~~~~~lgI~~~Gi~v~~ 169 (170)
-|.+...|+. .+|+.|-.+|.||++++.-.| .+-.+.-|+|| +|+.++.
T Consensus 433 ~~~gVs~ema~l~~~~~e~c~ei~~~ga~~~~pqd~ak~SpSD~~~~~~~vqv~-k~l~~ls 493 (558)
T KOG4335|consen 433 KLLGVSSEMAELMSSLIEYCIEIPSQGAEPAGPQDSAKGSPSDHSSSPAPVQVN-KGLPKLS 493 (558)
T ss_pred ceechhHHHHHHHHHHHHHheeehhccccccCcccccCCCCCcccccccccccc-ccchhhc
Confidence 4777777764 489999999999999996433 33357788888 7887764
No 25
>KOG3878|consensus
Probab=90.72 E-value=0.5 Score=39.09 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=52.0
Q ss_pred cccccChhHHHHHHHHHHHhhcCCCCccccCCCcCccccccCCCCCchHHHHHHHHHHHhccCCCHHHHHHHHHHHHhc
Q psy15745 59 HKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKK 137 (170)
Q Consensus 59 g~l~~~~~~~~~Laal~~Q~e~Gd~~~~~~~~~~~yl~~~~~lP~~~~~~~~~i~~~h~~~~G~s~~~A~~~yL~~~~~ 137 (170)
--++.+-++-+.|-||--|+.+|.|+++... +.++|.- +-......|+.+-.||+++|+..|..+.-+
T Consensus 49 Ka~h~~YEd~lKLial~kQv~~Gp~n~d~~p-~~G~lDv----------~GnDr~~~W~~LG~~sre~AM~~FV~Lldr 116 (469)
T KOG3878|consen 49 KAIHLSYEDNLKLIALKKQVALGPFNTDRAP-ALGVLDV----------IGNDRQQHWQLLGEISREQAMEGFVDLLDR 116 (469)
T ss_pred CccCCChhhhhhhhhhHhhhhcCCCCcccCc-ccceeec----------ccChHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3457788999999999999999999987764 2444421 233445688888899999999999877644
No 26
>KOG4335|consensus
Probab=87.36 E-value=0.38 Score=41.76 Aligned_cols=136 Identities=18% Similarity=0.269 Sum_probs=88.3
Q ss_pred Ccc-eeeeeeCCCCch--HHHHHHHH--------Hhhccc--cccChhHHHHHHHH-HHHhhcCCCCccccCCCcCcccc
Q psy15745 32 PDY-LREFKFAPNQTP--ELEQRVME--------LHKTHK--LPCSYVTYALLGSY-LVQSELGDYDQEEHKGNPDYLRE 97 (170)
Q Consensus 32 ~~~-~~~vkfy~~~~~--~l~~~~tr--------di~~g~--l~~~~~~~~~Laal-~~Q~e~Gd~~~~~~~~~~~yl~~ 97 (170)
|.. .-|..|++..-+ .+.++..+ +++.+| ++|+.+.+..++|+ .+-..+|+|++..+. ...++.
T Consensus 198 ~~~~~~rn~~~~~~re~~~~~ee~a~~n~eeA~~nvl~a~~~~~~~Ve~~~~~ga~~~c~lQ~gn~~~~r~~--~~gir~ 275 (558)
T KOG4335|consen 198 PFLQFRRNVFFPKGRELQIIDEEVARLNYEEAKGNVLAARNKYLCDVEDCEALGALRVCRLQLGNYQPVRPA--ACGIRL 275 (558)
T ss_pred cchHHhhhhhcccCcchhhhHHHHHHHhHHHHHHhHHHHhhhhhHHHHHHHHhhhhheehhhccCCccccch--hhhcch
Confidence 444 556777776533 23333332 888888 89999999999999 899999999988776 444542
Q ss_pred ----ccCCCCC------------------chHHHHHHHHHHHhccCCC---HHHHH-----HHHHHHHhcCCCCCCccee
Q psy15745 98 ----FKFAPNQ------------------TPELEQRVMELHKTHKGQT---PAEAE-----LNYLDNAKKLSMYGVVLHP 147 (170)
Q Consensus 98 ----~~~lP~~------------------~~~~~~~i~~~h~~~~G~s---~~~A~-----~~yL~~~~~l~~YG~~~f~ 147 (170)
..++|.+ ...-...+...|++..-.+ .-++. ..|+..+-..|+||.-+|+
T Consensus 276 ~~~~qs~f~~w~cs~~lslqlk~~h~p~~~v~~wp~LL~e~~N~sp~~d~p~~~l~r~v~l~~~~ek~iedp~~~~ilf~ 355 (558)
T KOG4335|consen 276 SEKLQSFFPAWLCSRGLSLQLKLRHRPARAVPGWPELLNEYRNVSPVSDDPGCELARGVHLRAYLEKCIEDPFYGCILFH 355 (558)
T ss_pred HHHHHHHhHHHHhhcchhhhhhhccCCcccccccHHHHHHHhcCCccCCccchhhhhcccchhhhHhhhhchhhhhhhhh
Confidence 1344443 1112344566676664322 11221 3477888889999999885
Q ss_pred -ecCC---------CCCeEEEe-EcCCeeEEcc
Q psy15745 148 -AKDS---------EGVDIMLG-VCASGILVYS 169 (170)
Q Consensus 148 -vkd~---------~~~~~~lg-I~~~Gi~v~~ 169 (170)
++|. ....+.+| |+..|++|-+
T Consensus 356 eaR~n~L~Gfy~~~~~k~v~va~i~l~~vhv~~ 388 (558)
T KOG4335|consen 356 EARDNPLQGFYHRGGRKSVSVASISLEGVHVVD 388 (558)
T ss_pred hhhhhhhccccccCCceeeehhhhhcccceeec
Confidence 3432 12488888 9999998754
No 27
>KOG3527|consensus
Probab=84.97 E-value=0.81 Score=42.24 Aligned_cols=73 Identities=60% Similarity=0.873 Sum_probs=53.4
Q ss_pred CCCCchhHHhhhchhhcccCCCCCcccccCCCcceeeeeeCCCCchHHHHHHHHHh--hccccccC-----hhHHHHHHH
Q psy15745 1 LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELH--KTHKLPCS-----YVTYALLGS 73 (170)
Q Consensus 1 l~c~~~~~~~~g~~~Wl~~~~~~~~~q~~~~~~~~~~vkfy~~~~~~l~~~~trdi--~~g~l~~~-----~~~~~~Laa 73 (170)
|||++-+.+++|++..+.++|+++.....+ .+ .-.++|-|++...|++.++..+ -+|.-|.. .+.|-.|+.
T Consensus 140 lPcsfvt~allgsy~vq~E~gdYd~ee~~~-~y-~~df~~aPnqt~eledkv~eLhkt~rg~~pa~A~ih~lenakkl~m 217 (975)
T KOG3527|consen 140 LPCSFVTHALLGSYTVQSELGDYDPEEHGS-DY-LSDFKFAPNQTKELEDKVMELHKTHRGMTPAEAEIHFLENAKKLSM 217 (975)
T ss_pred cccchhhhhhhhhHhHHhHhccCCHHHccc-ch-hhhhccCcchhhhHHHHHHHHHhhhcCCChhHhHHHHHHhhhhhhh
Confidence 799999999999999999999997655433 22 4567889999889999988733 33444543 245556665
Q ss_pred HH
Q psy15745 74 YL 75 (170)
Q Consensus 74 l~ 75 (170)
|-
T Consensus 218 Yg 219 (975)
T KOG3527|consen 218 YG 219 (975)
T ss_pred cc
Confidence 43
No 28
>KOG3784|consensus
Probab=79.89 E-value=1.9 Score=36.46 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=25.9
Q ss_pred HHHhccCCCHHHHHHHHHHHHhcCCCCCCcceee
Q psy15745 115 LHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPA 148 (170)
Q Consensus 115 ~h~~~~G~s~~~A~~~yL~~~~~l~~YG~~~f~v 148 (170)
.|.+++.+-.++-+.+||++|+++++||...|+-
T Consensus 234 ~~~QL~slq~q~~~~~fL~m~R~l~~Y~~l~f~~ 267 (407)
T KOG3784|consen 234 QYDQLKSLQEEESMKEFLELARTLEGYGYLIFDP 267 (407)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHhhccCCeEecCc
Confidence 3334445555556788999999999999999963
No 29
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=38.60 E-value=54 Score=21.40 Aligned_cols=46 Identities=17% Similarity=0.103 Sum_probs=26.0
Q ss_pred HHHhcc-C-CCHHHHHHHHHHHHhcCCCCCCcceeecCCCCCeEEEeE
Q psy15745 115 LHKTHK-G-QTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGV 160 (170)
Q Consensus 115 ~h~~~~-G-~s~~~A~~~yL~~~~~l~~YG~~~f~vkd~~~~~~~lgI 160 (170)
.+.+.. | +|.++|+...++....+..=|..+|.+-|.+|..+.-+.
T Consensus 26 ~~~~~~~g~ls~eea~~~a~~~l~~~r~~~~gY~fi~d~~g~~l~hp~ 73 (95)
T PF08269_consen 26 YYAQAQAGKLSEEEAQQQAREALRALRYGGDGYFFIYDMDGVVLAHPS 73 (95)
T ss_dssp HHHC-STT-----TTHHHHHHHHHH--SBTTB--EEE-TTSBEEEESS
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccCCCCeEEEEeCCCeEEEcCC
Confidence 344443 5 899999999999998888645678888888886665554
No 30
>KOG0792|consensus
Probab=34.31 E-value=57 Score=31.46 Aligned_cols=64 Identities=34% Similarity=0.512 Sum_probs=39.4
Q ss_pred CCCCchhHHhhhchhhcccCCCCCcccccCCCcc-eeee-eeCCCCch----HHHHHHHH--HhhccccccChh
Q psy15745 1 LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDY-LREF-KFAPNQTP----ELEQRVME--LHKTHKLPCSYV 66 (170)
Q Consensus 1 l~c~~~~~~~~g~~~Wl~~~~~~~~~q~~~~~~~-~~~v-kfy~~~~~----~l~~~~tr--di~~g~l~~~~~ 66 (170)
|+|.+..++++..+..|...+++.+.|-.+ .. ++.+ -+.+.++. ++.+++.. ..-.|-+|...|
T Consensus 134 l~Ct~~qailLA~yavQae~gdy~~~~s~~--~l~~~~~~p~~~~~~~n~~~e~~~kVa~lhQ~h~G~~~~eAE 205 (1144)
T KOG0792|consen 134 LPCTLNQAILLASYAVQAEFGDYNQKQSQD--GLEYLSVFPQCTLQDENVLEEFEQKVAELHQQHRGLLPAEAE 205 (1144)
T ss_pred cCCchHHHHHHHHhhhhhhhcchhhhcCCc--cchhccccccccccchhhHHHHHHHHHHHHHHhcccCccHHH
Confidence 699999999999999999999996444332 22 2222 22333344 33333333 444477776543
No 31
>COG3093 VapI Plasmid maintenance system antidote protein [General function prediction only]
Probab=25.54 E-value=1.3e+02 Score=20.78 Aligned_cols=20 Identities=5% Similarity=-0.235 Sum_probs=18.7
Q ss_pred HhhccccccChhHHHHHHHH
Q psy15745 55 LHKTHKLPCSYVTYALLGSY 74 (170)
Q Consensus 55 di~~g~l~~~~~~~~~Laal 74 (170)
.|++|+-..+.++|+.|+.+
T Consensus 42 ~ling~~~iT~dmAlrL~k~ 61 (104)
T COG3093 42 ELINGRRAITADMALRLAKV 61 (104)
T ss_pred HHHcCCcCCCHHHHHHHHHH
Confidence 89999999999999999975
No 32
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=23.40 E-value=84 Score=22.82 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=15.7
Q ss_pred CCCeEEEeEcCCeeEEcc
Q psy15745 152 EGVDIMLGVCASGILVYS 169 (170)
Q Consensus 152 ~~~~~~lgI~~~Gi~v~~ 169 (170)
+...++|-||.+||.|..
T Consensus 51 kk~kV~L~IS~dGi~v~D 68 (139)
T cd01215 51 HKTRITLQINIDGIKVLD 68 (139)
T ss_pred ccceEEEEEccCCEEEEc
Confidence 457999999999999975
No 33
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.23 E-value=98 Score=20.57 Aligned_cols=21 Identities=19% Similarity=0.048 Sum_probs=18.1
Q ss_pred CCCCCcceeecCCCCCeEEEe
Q psy15745 139 SMYGVVLHPAKDSEGVDIMLG 159 (170)
Q Consensus 139 ~~YG~~~f~vkd~~~~~~~lg 159 (170)
..+|...|.++|.+|..+.+|
T Consensus 92 ~~~g~r~f~~~DPdGn~~~~~ 112 (113)
T cd08356 92 QPWWGREFFLHDPSGVLWHIG 112 (113)
T ss_pred cCCCcEEEEEECCCccEEEee
Confidence 458999999999999888775
Done!