RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15745
(170 letters)
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 138 bits (349), Expect = 2e-40
Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQ--TPELEQRVMELHK 117
P S+ + Q + G +++++HK +L F P + + E+++ + HK
Sbjct: 198 SHPVSFDKACEFAGFQCQIQFGPHNEQKHK--AGFLDLKDFLPKEYVKQKGERKIFQAHK 255
Query: 118 THKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEG-----VDIMLGVCASGILVY 168
+ EA++ Y+ A+ L YGV K+ V +LG+ ++
Sbjct: 256 NCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRV 311
Score = 78.0 bits (192), Expect = 9e-18
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 1 LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQ--TPELEQRVMELHKT 58
P S+ + Q + G +++++HK +L F P + + E+++ + HK
Sbjct: 199 HPVSFDKACEFAGFQCQIQFGPHNEQKHK--AGFLDLKDFLPKEYVKQKGERKIFQAHKN 256
Query: 59 HK 60
Sbjct: 257 CG 258
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics
conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A
2he7_A 2rq1_A
Length = 296
Score = 136 bits (343), Expect = 4e-40
Identities = 74/111 (66%), Positives = 92/111 (82%), Gaps = 2/111 (1%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTH 119
+LPCS+ T ALLGSY +QSELGDYD E H DY+ +FK APNQT ELE++VMELHK++
Sbjct: 125 RLPCSFATLALLGSYTIQSELGDYDPELHG--VDYVSDFKLAPNQTKELEEKVMELHKSY 182
Query: 120 KGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE 170
+ TPA+A+L +L+NAKKLSMYGV LH AKD EGVDI+LGVC+SG+LVY +
Sbjct: 183 RSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKD 233
Score = 72.3 bits (177), Expect = 7e-16
Identities = 39/60 (65%), Positives = 48/60 (80%), Gaps = 2/60 (3%)
Query: 1 LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHK 60
LPCS+ T ALLGSY +QSELGDYD E H DY+ +FK APNQT ELE++VMELHK+++
Sbjct: 126 LPCSFATLALLGSYTIQSELGDYDPELHG--VDYVSDFKLAPNQTKELEEKVMELHKSYR 183
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 128 bits (323), Expect = 5e-37
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPE--------LEQR 111
K+ C LL SY VQ++ GDYD HK +L + + P + E+R
Sbjct: 131 KIYCPPEASVLLASYAVQAKYGDYDPSVHK--RGFLAQEELLPKRVINLYQMTPEMWEER 188
Query: 112 VMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVY 168
+ + H+G+ EAE+ YL A+ L MYGV ++ +G +++LGV A G+ +Y
Sbjct: 189 ITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIY 245
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion;
2.05A {Mus musculus}
Length = 222
Score = 126 bits (317), Expect = 6e-37
Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQ--TPELEQRVMELHK 117
P S+ + Q + G +++++HK +L F P + + E+++ + HK
Sbjct: 44 SHPVSFDKACEFAGFQCQIQFGPHNEQKHK--AGFLDLKDFLPKEYVKQKGERKIFQAHK 101
Query: 118 THKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEG-----VDIMLGVCASGILVY 168
+ EA++ Y+ A+ L YGV K+ V +LG+ ++
Sbjct: 102 NCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRV 157
Score = 69.5 bits (170), Expect = 3e-15
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 1 LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQ--TPELEQRVMELHKT 58
P S+ + Q + G +++++HK +L F P + + E+++ + HK
Sbjct: 45 HPVSFDKACEFAGFQCQIQFGPHNEQKHK--AGFLDLKDFLPKEYVKQKGERKIFQAHKN 102
Query: 59 HK 60
Sbjct: 103 CG 104
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 129 bits (325), Expect = 8e-36
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 21/164 (12%)
Query: 24 DQEEHKGNPDYLR-EFKFAPNQTPELEQRVMELH----------KTHKLPCSYVTYALLG 72
Q+ K NP + KF P + + + L + ++ C T LL
Sbjct: 67 QQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLA 126
Query: 73 SYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTP--------ELEQRVMELHKTHKGQTP 124
SY VQ+ GD++ H P +L + P + E EQ + + H+G
Sbjct: 127 SYAVQARHGDHNPAVHG--PGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLR 184
Query: 125 AEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVY 168
+A + YL A+ L MYGV ++ + ++ LGV A G+ +Y
Sbjct: 185 EDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIY 228
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A
{Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB:
1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A
2zpy_A 1gc7_A 1gc6_A 1ni2_A
Length = 294
Score = 123 bits (311), Expect = 2e-35
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 59 HKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQT--------PELEQ 110
+ C T LL SY VQS+ GD+++E HK YL K P + + E+
Sbjct: 110 DDIYCPPETAVLLASYAVQSKYGDFNKEVHK--SGYLAGDKLLPQRVLEQHKLNKDQWEE 167
Query: 111 RVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVY 168
R+ H+ H+G +A L YL A+ L MYGV K+ +G ++ LGV A G+ +Y
Sbjct: 168 RIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIY 225
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton,
structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1
b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A
2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Length = 206
Score = 121 bits (305), Expect = 3e-35
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPE--LEQRVMELHK 117
P S+ Y Q + G +++++H P +L F P + + E+++ HK
Sbjct: 33 SHPVSFDKACEFAGYQCQIQFGPHNEQKH--KPGFLELKDFLPKEYIKQKGERKIFMAHK 90
Query: 118 THKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEG-----VDIMLGVCASGILVY 168
+ EA++ Y+ A+ L YGV K+ V +LG+ ++
Sbjct: 91 NCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRV 146
Score = 63.4 bits (154), Expect = 5e-13
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 1 LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPE--LEQRVMELHKT 58
P S+ Y Q + G +++++H P +L F P + + E+++ HK
Sbjct: 34 HPVSFDKACEFAGYQCQIQFGPHNEQKH--KPGFLELKDFLPKEYIKQKGERKIFMAHKN 91
Query: 59 HK 60
Sbjct: 92 CG 93
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 105 bits (263), Expect = 4e-28
Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 23/130 (17%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAP--------NQTPELEQR 111
L S L+Q G+Y+ ++HK +L E ++ P R
Sbjct: 129 FYTAPDAKLITLASLLLQIVYGNYESKKHK--QGFLNEENLKSIVPVTKLKSKAPHWTNR 186
Query: 112 VMELHKTHKGQTPAEAELN-----YLDNAKKLSMYGVVLHPA--------KDSEGVDIML 158
++ +K E++ +L N ++ YG + + + + +
Sbjct: 187 ILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYV 246
Query: 159 GVCASGILVY 168
GV G+ +
Sbjct: 247 GVNIKGLHLL 256
>3au4_A Myosin-X; protein-protein complex, motor protein cargo
transportation, protein-apoptosis complex; 1.90A {Homo
sapiens} PDB: 3au5_A 3pzd_A
Length = 555
Score = 71.5 bits (174), Expect = 3e-15
Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 30/171 (17%)
Query: 1 LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHK 60
P +L + +Q GDY P LE+ +
Sbjct: 337 HPAPEENLQVLAALRLQYLQGDYTLHAA----------------IPPLEEVYSLQRLKAR 380
Query: 61 LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHK 120
+ S T++ +V+ ++ + + + + +++ + +
Sbjct: 381 ISQSTKTFSFRTGSVVRQKVEEEQMLDM-----------WIKEEVSSARASIIDKWRKFQ 429
Query: 121 GQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEG---VDIMLGVCASGILVY 168
G +A Y+ K+ YG L + EG ++ LGV A + VY
Sbjct: 430 GMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELWLGVSADAVSVY 480
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 64.6 bits (156), Expect = 8e-13
Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 14/125 (11%)
Query: 60 KLPCSYV-TYALLGSYLVQSELGDYDQEEHKGN--PDYLREFKFAPNQTPE-LEQRVMEL 115
+ C A L S + G E + P Y+ + + P + E Q +
Sbjct: 385 EYRCEKEDDLAELASQQYFVDYGSEMILERLLSLVPTYIPDREITPLKNLEKWAQLAIAA 444
Query: 116 HK----THKGQTPAEAELNYLDNAK-KLSMYGVVLHPAKDSE-----GVDIMLGVCASGI 165
HK + + + + ++ A+ K + + A D+++ V +G+
Sbjct: 445 HKKGIYAQRRTDSQKVKEDVVNYARFKWPLLFSRFYEAYKFSGPPLPKSDVIVAVNWTGV 504
Query: 166 LVYSE 170
E
Sbjct: 505 YFVDE 509
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2,
FERM domain, transferase; 3.25A {Homo sapiens}
Length = 392
Score = 53.7 bits (128), Expect = 4e-09
Identities = 14/118 (11%), Positives = 36/118 (30%), Gaps = 14/118 (11%)
Query: 62 PCSYVTYALLGSYLVQSELGDYDQE--EHKGNPDYLREF----KFAPN------QTPELE 109
S LG ++ D + K N + L + F P + +
Sbjct: 152 KVSEGMALQLGCLELRRFFKDMPHNALDKKSNFELLEKEVGLDLFFPKQMQENLKPKQFR 211
Query: 110 QRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEG--VDIMLGVCASGI 165
+ + + + + E + + + + + + +G + + L + GI
Sbjct: 212 KMIQQTFQQYASLREEECVMKFFNTLAGFANIDQETYRCELIQGWNITVDLVIGPKGI 269
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Length = 375
Score = 42.1 bits (98), Expect = 3e-05
Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 17/116 (14%)
Query: 71 LGSYLVQSELGDYDQE--EHKGNPDYLREF----KFAP------NQTPELEQRVMELHKT 118
LG ++ G+ E K N + L + +F P + L + + + +
Sbjct: 141 LGCLEIRRSYGEMRGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQ 200
Query: 119 HKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEG----VDIMLGVCASGILVYSE 170
E+ L + + + + V++ +G GI ++
Sbjct: 201 FANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIG-PEEGISYLTD 255
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 31.2 bits (70), Expect = 0.20
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 22 DYDQEEHKGNP--DYLREFKFAPNQTPELEQRVMELHKTHKLPCSYVTYA 69
DY+ GNP D+L+ Q LE + P + YA
Sbjct: 1505 DYEAGASHGNPVVDFLKRNGSTLEQKVNLENPIPIAVLDSYTPSTNEPYA 1554
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.86
Identities = 25/172 (14%), Positives = 46/172 (26%), Gaps = 47/172 (27%)
Query: 7 TYALLGSYLVQSELGDYDQEEHKGNP-----------------DYLREFKFAP------- 42
+LL YL D +E NP D +
Sbjct: 303 VKSLLLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 43 ---NQTP-ELEQRVMELH---KTHKLPCSYVTYALLGSYLVQSELGDYDQEEHK------ 89
P E + L + +P + +L+ +++S++ + HK
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIP--TILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 90 -------GNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDN 134
P E K L + +++ + K + YLD
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Score = 27.1 bits (59), Expect = 3.8
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 31/136 (22%)
Query: 7 TYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKLPC-SY 65
T ++ YL + + H+ + + + + Y
Sbjct: 425 TISIPSIYLELKVKLENEYALHR---SIVDHYNI---------PKTFDSDDLIPPYLDQY 472
Query: 66 VTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPA 125
Y+ +G +L E + +L +F+F LEQ++ H T
Sbjct: 473 F-YSHIGHHLKNIEHPERMTLFRM---VFL-DFRF-------LEQKIR-----HDS-TAW 514
Query: 126 EAELNYLDNAKKLSMY 141
A + L+ ++L Y
Sbjct: 515 NASGSILNTLQQLKFY 530
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.134 0.394
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,573,978
Number of extensions: 143641
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 27
Length of query: 170
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 83
Effective length of database: 4,272,666
Effective search space: 354631278
Effective search space used: 354631278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.8 bits)