RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15745
(170 letters)
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 94.2 bits (234), Expect = 2e-26
Identities = 53/84 (63%), Positives = 67/84 (79%), Gaps = 2/84 (2%)
Query: 58 THKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHK 117
+LPCS+ T ALLGSY +QSELGDYD E H DY+ +FK APNQT ELE++VMELHK
Sbjct: 25 AGRLPCSFATLALLGSYTIQSELGDYDPELHG--VDYVSDFKLAPNQTKELEEKVMELHK 82
Query: 118 THKGQTPAEAELNYLDNAKKLSMY 141
+++ TPA+A+L +L+NAKKLSMY
Sbjct: 83 SYRSMTPAQADLEFLENAKKLSMY 106
Score = 63.4 bits (154), Expect = 2e-14
Identities = 39/60 (65%), Positives = 48/60 (80%), Gaps = 2/60 (3%)
Query: 1 LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHK 60
LPCS+ T ALLGSY +QSELGDYD E H DY+ +FK APNQT ELE++VMELHK+++
Sbjct: 28 LPCSFATLALLGSYTIQSELGDYDPELHG--VDYVSDFKLAPNQTKELEEKVMELHKSYR 85
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 87.2 bits (216), Expect = 2e-23
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTP--------ELEQR 111
K+ C LL SY VQ++ GDYD HK +L + + P + E+R
Sbjct: 27 KIYCPPEASVLLASYAVQAKYGDYDPSVHK--RGFLAQEELLPKRVINLYQMTPEMWEER 84
Query: 112 VMELHKTHKGQTPAEAELNYLDNAKKL 138
+ + H+G+ EAE+ YL A+ L
Sbjct: 85 ITAWYAEHRGRARDEAEMEYLKIAQDL 111
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 114
Score = 86.1 bits (213), Expect = 4e-23
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQ--TPELEQRVMELHK 117
P S+ Y Q + G +++++HK P +L F P + + E+++ HK
Sbjct: 33 SHPVSFDKACEFAGYQCQIQFGPHNEQKHK--PGFLELKDFLPKEYIKQKGERKIFMAHK 90
Query: 118 THKGQTPAEAELNYLDNAKKLSMY 141
+ EA++ Y+ A+ L Y
Sbjct: 91 NCGNMSEIEAKVRYVKLARSLKTY 114
Score = 57.6 bits (139), Expect = 4e-12
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 1 LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQ--TPELEQRVMELHKT 58
P S+ Y Q + G +++++HK P +L F P + + E+++ HK
Sbjct: 34 HPVSFDKACEFAGYQCQIQFGPHNEQKHK--PGFLELKDFLPKEYIKQKGERKIFMAHKN 91
Query: 59 HK 60
Sbjct: 92 CG 93
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 83.4 bits (206), Expect = 4e-22
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTP--------ELEQR 111
+ C T LL SY VQS+ GD+++E HK YL K P + + E+R
Sbjct: 27 DIYCPPETAVLLASYAVQSKYGDFNKEVHK--SGYLAGDKLLPQRVLEQHKLNKDQWEER 84
Query: 112 VMELHKTHKGQTPAEAELNYLDNAKKL 138
+ H+ H+G +A L YL A+ L
Sbjct: 85 IQVWHEEHRGMLREDAVLEYLKIAQDL 111
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 123
Score = 55.9 bits (134), Expect = 2e-11
Identities = 8/104 (7%), Positives = 25/104 (24%), Gaps = 12/104 (11%)
Query: 50 QRVMELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHK------------GNPDYLRE 97
Q + LG ++ G+ + G + +
Sbjct: 20 QVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVLEKDVGLRRFFPK 79
Query: 98 FKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMY 141
+ L + + + + E+ L + + + +
Sbjct: 80 SLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRF 123
>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 52.5 bits (126), Expect = 3e-10
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 140 MYGVVLHPAKDSEGVDIMLGVCASGILVY 168
MYGV ++ +G +++LGV A G+ +Y
Sbjct: 2 MYGVNYFAIRNKKGTELLLGVDALGLHIY 30
>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 51.8 bits (124), Expect = 4e-10
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 140 MYGVVLHPAKDSEGVDIMLGVCASGILVY 168
MYGV K+ +G ++ LGV A G+ +Y
Sbjct: 2 MYGVNYFSIKNKKGSELWLGVDALGLNIY 30
>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 48.3 bits (115), Expect = 9e-09
Identities = 21/27 (77%), Positives = 24/27 (88%)
Query: 142 GVVLHPAKDSEGVDIMLGVCASGILVY 168
GV LH AKD EGVDI+LGVC+SG+LVY
Sbjct: 1 GVDLHKAKDLEGVDIILGVCSSGLLVY 27
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 204
Score = 24.9 bits (53), Expect = 5.3
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 2/77 (2%)
Query: 37 EFKFAPNQTPELEQRVMELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLR 96
F+ + + V + S+ D+ G Y R
Sbjct: 25 SFRADFSDNRRRGFEEQWYRRPLWESGPTVDMPVPSSF--NDISQDWRLRHFVGWVWYER 82
Query: 97 EFKFAPNQTPELEQRVM 113
E T +L RV+
Sbjct: 83 EVILPERWTQDLRTRVV 99
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.134 0.394
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 622,795
Number of extensions: 27598
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 15
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.2 bits)