BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15746
         (760 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PSS|L Chain L, Crystallographic Analyses Of Site-Directed Mutants Of The
           Photosynthetic Reaction Center From Rhodobacter
           Sphaeroides
 pdb|1PST|L Chain L, Crystallographic Analyses Of Site-Directed Mutants Of The
           Photosynthetic Reaction Center From Rhodobacter
           Sphaeroides
          Length = 266

 Score = 29.3 bits (64), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 238 EYGVNCSDISLEKIYNHLDVFALGHFVGWAFKAVLI-RHMGILWAMSVMWEFTEIAFAHL 296
           EYG+  + ++   ++  + + A G FV WA + V I R +GI + +   + F  +A+  L
Sbjct: 68  EYGLGGAPLAKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTL 127

Query: 297 L 297
           +
Sbjct: 128 V 128


>pdb|3V3Y|L Chain L, Photosynthetic Reaction Center From Rhodobacter
           Sphaeroides Strain Rv
          Length = 281

 Score = 28.9 bits (63), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 238 EYGVNCSDISLEKIYNHLDVFALGHFVGWAFKAVLI-RHMGILWAMSVMWEFTEIAFAHL 296
           EYG+  + ++   ++  + + A G FV WA + V I R +GI + +   + F  +A+  L
Sbjct: 72  EYGLGGAPLAKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTL 131

Query: 297 L 297
           +
Sbjct: 132 V 132


>pdb|3ZUM|L Chain L, Photosynthetic Reaction Centre Mutant With Phe L146
           Replaced With Ala
          Length = 281

 Score = 28.9 bits (63), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 238 EYGVNCSDISLEKIYNHLDVFALGHFVGWAFKAVLI-RHMGILWAMSVMWEFTEIAFAHL 296
           EYG+  + ++   ++  + + A G FV WA + V I R +GI + +   + F  +A+  L
Sbjct: 72  EYGLGGAPLAKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTL 131

Query: 297 L 297
           +
Sbjct: 132 V 132


>pdb|2WX5|L Chain L, Hexa-Coordination Of A Bacteriochlorophyll Cofactor In The
           Rhodobacter Sphaeroides Reaction Centre
          Length = 281

 Score = 28.9 bits (63), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 238 EYGVNCSDISLEKIYNHLDVFALGHFVGWAFKAVLI-RHMGILWAMSVMWEFTEIAFAHL 296
           EYG+  + ++   ++  + + A G FV WA + V I R +GI + +   + F  +A+  L
Sbjct: 72  EYGLGGAPLAKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTL 131

Query: 297 L 297
           +
Sbjct: 132 V 132


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.142    0.477 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,814,972
Number of Sequences: 62578
Number of extensions: 835589
Number of successful extensions: 1990
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1968
Number of HSP's gapped (non-prelim): 44
length of query: 760
length of database: 14,973,337
effective HSP length: 106
effective length of query: 654
effective length of database: 8,340,069
effective search space: 5454405126
effective search space used: 5454405126
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)