RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15746
(760 letters)
>gnl|CDD|145924 pfam03034, PSS, Phosphatidyl serine synthase. Phosphatidyl serine
synthase is also known as serine exchange enzyme. This
family represents eukaryotic PSS I and II which are
membrane bound proteins which catalyzes the replacement
of the head group of a phospholipid (phosphotidylcholine
or phosphotidylethanolamine) by L-serine.
Length = 278
Score = 359 bits (923), Expect = e-119
Identities = 147/308 (47%), Positives = 189/308 (61%), Gaps = 34/308 (11%)
Query: 159 PHPAVWRMVFGLSIFYLLALLFLLFQNYETANLRILFFGNYPKKRTHIFEMPPSHPIVII 218
PHPA WR+V GLS+ YLLAL+FLLFQNYE A R + PK + E
Sbjct: 1 PHPAFWRLVLGLSVLYLLALVFLLFQNYEDA--RQILKFIDPKLGKPLPE---------- 48
Query: 219 RLSFLGIMVAPSARIDMDKEYGVNCSDISLE---KIYNHLDVFALGHFVGWAFKAVLIRH 275
+ Y NC + E I + DVF L HF+GW KA++IR
Sbjct: 49 ------------------RSYAENCRIYTPEHPHNILSTFDVFVLAHFLGWFGKALIIRD 90
Query: 276 MGILWAMSVMWEFTEIAFAHLLPNFIECWWDALILDILLCNGIGIWVGLKLCKWFEMREY 335
G+LWA+S+ +E EI F HLLPNF ECWWD +ILD+L+CNG+GIW+G+K C+ M+EY
Sbjct: 91 WGLLWAISIAFELLEITFRHLLPNFNECWWDHIILDVLICNGLGIWLGMKTCRLLRMKEY 150
Query: 336 KWVSIKDIHSTSGKLKRAMLQFTPQSWTHVRWLDPTCTYMRFIGVCQMVLFWQLSELNTF 395
WV +KDI S GKLKR +LQFTP SW W RF+ V +V L+ELNTF
Sbjct: 151 HWVGLKDIPSYRGKLKRVLLQFTPASWDKYEWKVFKS-PKRFLQVLFLVFLILLAELNTF 209
Query: 396 FLKHIFEMPPSHPIVIIRLSFLGIMVAPSARQYYSFVTDTQCKRLGTQCWIYGAIQLTEA 455
FLKHI +PPSHP+V+ RL G++ AP+ R+YY ++TD + KRLGTQ W+ AI TEA
Sbjct: 210 FLKHILWIPPSHPLVLYRLILWGLISAPAIREYYVYITDPRTKRLGTQAWVAIAILFTEA 269
Query: 456 LLCIKNGK 463
L+C+K G+
Sbjct: 270 LICVKFGQ 277
Score = 74.3 bits (183), Expect = 2e-14
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 702 KEYGVNCSDISLE---KIYNHLDVFALGHFVGWAFKAVLIRHMGILWAMSVMWEFTE 755
+ Y NC + E I + DVF L HF+GW KA++IR G+LWA+S+ +E E
Sbjct: 49 RSYAENCRIYTPEHPHNILSTFDVFVLAHFLGWFGKALIIRDWGLLWAISIAFELLE 105
Score = 60.8 bits (148), Expect = 5e-10
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 572 LCVYGCVLWHRYVSILKYRQYYSFVTDTQCKRLGTQCWIYGAIQLTEALLCIKNGK 627
L +Y +LW +S R+YY ++TD + KRLGTQ W+ AI TEAL+C+K G+
Sbjct: 223 LVLYRLILWG-LISAPAIREYYVYITDPRTKRLGTQAWVAIAILFTEALICVKFGQ 277
Score = 58.1 bits (141), Expect = 4e-09
Identities = 21/38 (55%), Positives = 29/38 (76%)
Query: 511 RQYYSFVTDTQCKRLGTQCWIYGAIQLTEALLCIKNGK 548
R+YY ++TD + KRLGTQ W+ AI TEAL+C+K G+
Sbjct: 240 REYYVYITDPRTKRLGTQAWVAIAILFTEALICVKFGQ 277
Score = 56.6 bits (137), Expect = 1e-08
Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 89 PHPAVWRMVFGLSIFYLLALLFLLFQNYETA 119
PHPA WR+V GLS+ YLLAL+FLLFQNYE A
Sbjct: 1 PHPAFWRLVLGLSVLYLLALVFLLFQNYEDA 31
>gnl|CDD|178518 PLN02930, PLN02930, CDP-diacylglycerol-serine
O-phosphatidyltransferase.
Length = 353
Score = 244 bits (624), Expect = 4e-74
Identities = 123/346 (35%), Positives = 187/346 (54%), Gaps = 40/346 (11%)
Query: 130 DNIWAGLIAVIFFLLLISTLAFPNGPFTRPHPAVWRMVFGLSIFYLLALLFLLFQNYETA 189
++ G+ A+I L L P+ RPHPA+WR+V G+++ YL+AL FLLFQ + A
Sbjct: 36 TSVKRGVWAMIAVFLAYCLLQAPSTVLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDA 95
Query: 190 NLRILFFGNYPKKRTHIFEMPPSHPIVIIRLSFLGIMVAPSARIDMDKEYGVNCSDISLE 249
+ F HP + + L ++ YG +C + E
Sbjct: 96 RQFMKFL----------------HPDLGVELP--------------ERSYGADCRIYTPE 125
Query: 250 K-------IYNHL-DVFALGHFVGWAFKAVLIRHMGILWAMSVMWEFTEIAFAHLLPNFI 301
+Y+ L D F + H +GW KA++IR+ +LW +S+ +E E+ F H+LPNF
Sbjct: 126 HPSSRFKNVYDTLFDEFVVAHILGWWGKAIMIRNQPLLWVLSIGFELMELTFRHMLPNFN 185
Query: 302 ECWWDALILDILLCNGIGIWVGLKLCKWFEMREYKWVSIKDIHSTSGKLKRAMLQFTPQS 361
ECWWD+++LD+L+CN GIW G+ K+F+ + Y+WV I + GK+KR + QFTP
Sbjct: 186 ECWWDSIVLDVLICNWFGIWAGMHTVKYFDGKTYEWVGISRQPNIIGKVKRTLGQFTPAQ 245
Query: 362 WTHVRWLDPTCTYMRFIGVCQMVLFWQLSELNTFFLKHIFEMPPSHPIVIIRLSFLGIMV 421
W W P RF+ V + + + ELNTFFLK +PP +P+++ RL ++
Sbjct: 246 WDKDEW-HPLQGPWRFLQVLFLCVVFLTVELNTFFLKFCLWIPPRNPLIVYRLILWWLIA 304
Query: 422 APSARQYYSFVTDTQ-CKRLGTQCWIYGAIQLTEALLCIKNGKLLF 466
P+ R+Y SF+ D + K+LG CW+ AI + E L+CIK G LF
Sbjct: 305 IPTIREYNSFLQDRKPVKKLGAFCWLSLAICIVELLICIKFGHGLF 350
Score = 72.5 bits (178), Expect = 1e-13
Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 29 FYKPHTIAALLCSIFGVIVAS--FIRNEDVSET--DNIWAGLIAVIFFLLLISTLAFPNG 84
YKPHTI+ LL +I AS S ++ G+ A+I L L P+
Sbjct: 1 AYKPHTISLLLIGACFLIWASGALDPESTTSGDLVTSVKRGVWAMIAVFLAYCLLQAPST 60
Query: 85 PFTRPHPAVWRMVFGLSIFYLLALLFLLFQNYETA 119
RPHPA+WR+V G+++ YL+AL FLLFQ + A
Sbjct: 61 VLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDA 95
Score = 46.3 bits (110), Expect = 4e-05
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 572 LCVYGCVLWHRYVSILKYRQYYSFVTDTQ-CKRLGTQCWIYGAIQLTEALLCIKNGKLLF 630
L VY +LW ++I R+Y SF+ D + K+LG CW+ AI + E L+CIK G LF
Sbjct: 292 LIVYRLILWW-LIAIPTIREYNSFLQDRKPVKKLGAFCWLSLAICIVELLICIKFGHGLF 350
Score = 41.3 bits (97), Expect = 0.001
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 701 DKEYGVNCSDISLEK-------IYNHL-DVFALGHFVGWAFKAVLIRHMGILWAMSVMWE 752
++ YG +C + E +Y+ L D F + H +GW KA++IR+ +LW +S+ +E
Sbjct: 112 ERSYGADCRIYTPEHPSSRFKNVYDTLFDEFVVAHILGWWGKAIMIRNQPLLWVLSIGFE 171
Query: 753 FTEF 756
E
Sbjct: 172 LMEL 175
Score = 40.5 bits (95), Expect = 0.002
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 487 LCVYGCVLWHRYVSVMFFYCPYFDRQYYSFVTDTQ-CKRLGTQCWIYGAIQLTEALLCIK 545
L VY +LW R+Y SF+ D + K+LG CW+ AI + E L+CIK
Sbjct: 292 LIVYRLILWWLIAIPTI-------REYNSFLQDRKPVKKLGAFCWLSLAICIVELLICIK 344
Query: 546 NGKLLF 551
G LF
Sbjct: 345 FGHGLF 350
>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose
phosphotransferase. This family of proteins encompasses
the E. coli WcaJ protein involved in colanic acid
biosynthesis , the Methylobacillus EpsB protein involved
in methanolan biosynthesis , as well as the GumD protein
involved in the biosynthesis of xanthan. All of these
are closely related to the well-characterized WbaP
(formerly RfbP) protein which is the first enzyme in
O-antigen biosynthesis in Salmonella typhimurium. The
enzyme transfers galactose from UDP-galactose (NOTE: not
glucose) to a polyprenyl carrier (utilizing the highly
conserved C-terminal sugar transferase domain,
pfam02397) a reaction which takes place at the
cytoplasmic face of the inner membrane. The N-terminal
hydrophobic domain is then believed to facilitate the
"flippase" function of transferring the liposaccharide
unit from the cytoplasmic face to the periplasmic face
of the inner membrane. Most of these genes are found
within large operons dedicated to the production of
complex exopolysaccharides such as the enterobacterial
O-antigen. Colanic acid biosynthesis utilizes a
glucose-undecaprenyl carrier , knockout of EpsB
abolishes incorporation of UDP-glucose into the lipid
phase and the C-terminal portion of GumD has been shown
to be responsible for the glucosyl-1-transferase
activity.
Length = 451
Score = 36.4 bits (85), Expect = 0.056
Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 66 LIAVIFFLLLISTLAFPNGPFTRPHPAVWRMVFGLSIFYLLALLFLLFQNYETAICRNED 125
L+ ++ LLL L F + + ++ + +F L+F LF Y + R+
Sbjct: 4 LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLF---LLIFALFGLYRSWRRRSRL 60
Query: 126 VSETDNIWAGLIAVIFFLLLISTLAFPNGPFTRPHPAVWRMVFGLSIFYLLALLFLLFQ 184
I L L++ L F+ R+ L ++LLAL LL
Sbjct: 61 REMLLRILLAWTLTFLILALLAFLLKYGTEFS-------RLWLLL--WFLLALALLLLG 110
>gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 588
Score = 33.8 bits (78), Expect = 0.34
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 16/109 (14%)
Query: 94 WRMVFGLSIFYLLALLFLLFQNYETAICRNEDVSETDNIWAGLIAVI-FFLLLISTLAFP 152
+ G L +F+LF Y A+ R S +D ++ L AV+ L+ + +
Sbjct: 26 ASLWSGAQ--LLTICVFILFGLY-RAVWR---ASVSD-LFIILKAVLTSALVSLLFFSTR 78
Query: 153 NGPFTRPHPAVWRMVFGLSIFYLLALLFLLFQNYETAN----LRILFFG 197
V + + L + A L + +R+L G
Sbjct: 79 TDLPRS----VVLVYWLLLFVLIGASRLLFRALRDALQKDNRIRLLIIG 123
>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl
glycosylphosphotransferase. Members of this family are
generally found near other genes involved in the
biosynthesis of a variety of exopolysaccharides. These
proteins consist of two fused domains, an N-terminal
hydrophobic domain of generally low conservation and a
highly conserved C-terminal sugar transferase domain
(pfam02397). Characterized and partially characterized
members of this subfamily include Salmonella WbaP
(originally RfbP) , E. coli WcaJ , Methylobacillus EpsB,
Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B
Streptococcus CpsE (originally CpsD), and Streptococcus
suis Cps2E. Each of these is believed to act in
transferring the sugar from, for instance, UDP-glucose
or UDP-galactose, to a lipid carrier such as
undecaprenyl phosphate as the first (priming) step in
the synthesis of an oligosaccharide "block". This
function is encoded in the C-terminal domain. The
liposaccharide is believed to be subsequently
transferred through a "flippase" function from the
cytoplasmic to the periplasmic face of the inner
membrane by the N-terminal domain. Certain closely
related transferase enzymes such as Sinorhizobium ExoY
and Lactococcus EpsD lack the N-terminal domain and are
not found by this model.
Length = 445
Score = 32.2 bits (74), Expect = 1.0
Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 13/119 (10%)
Query: 66 LIAVIFFLLLISTLAFPNGPFTRPHPAVWRMVFGLSIFYLLALLFLLFQNYETAICRNED 125
L+A+ LLL L ++ ++ L L A L Y + R
Sbjct: 4 LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGL----YRSWRGR--- 56
Query: 126 VSETDNIWAGLIAVIFFLLLISTLAF--PNGPFTRPHPAVWRMVFGLSIFYLLALLFLL 182
S + + L+A + LL+ LAF F+R V + F L++ LL LL
Sbjct: 57 -SLLEELARVLLAWLLVFLLLLALAFLLKGFDFSRL---VLLLWFVLALVLLLLWRLLL 111
>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent
hydrolase [General function prediction only].
Length = 555
Score = 32.4 bits (74), Expect = 1.1
Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 42/197 (21%)
Query: 66 LIAVIFFLLLISTLAFPNGPFTRPHPAVWRMVFGLSIFYLLALL---FLLFQNYETAICR 122
L V FLLL+ L+FP + + L++ F F Y I +
Sbjct: 51 LALVFAFLLLLLLLSFP-----------RLLKPLAGVLSLVSAAASYFAYF--YGIIIDK 97
Query: 123 N--EDVSETD------------NIWAGLIAVIFFLLLISTLAFPNGPFTRPHPAVWRMVF 168
N +V ET+ +W L+ ++ LL++ + + R R+V
Sbjct: 98 NMLLNVFETNTAESSELLTLYFLLWLVLVGLLPALLIVLVIIRYYRVWLR--RLWARLVS 155
Query: 169 GLSIFYLLALLFLLFQNYETANLRILFFGNYPKKRTHIFEMPPSHPIVIIRLSFLGIMV- 227
L ++ F + R N + P++ + + + G ++
Sbjct: 156 ILLSLLVILAFAAPFYKNYASIFR-----NNGDSLAKRYR--PANYLYALFGYYQGQVIK 208
Query: 228 --APSARIDMDKEYGVN 242
P +I +D N
Sbjct: 209 SLFPLLQIGLDAFPLPN 225
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 31.2 bits (71), Expect = 2.6
Identities = 25/133 (18%), Positives = 44/133 (33%), Gaps = 14/133 (10%)
Query: 62 IWAGLIAVIFFLLLISTLAFPNGPFTRPHP---AVWR-MVFGLSIFYLLALLFLLFQN-- 115
+ GL++ I F+L T A+ + F + + L L +
Sbjct: 784 LIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAFTVLVLIQLLLTLAVRSRGR 843
Query: 116 --YETAICRNEDVSETDNIWAGLIAVIFFLLLISTLAFPNGPFTRPHPAVWRMVFGLSIF 173
+ + N+ +W L+ +I LLI L N +P P
Sbjct: 844 PFLSSLLFSNK------YLWLALLVIIILQLLIIFLPPLNLKIFQPTPLSLFEWLIAIAV 897
Query: 174 YLLALLFLLFQNY 186
LL L ++ + Y
Sbjct: 898 ALLLLYIVVSELY 910
Score = 30.0 bits (68), Expect = 6.0
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 18/146 (12%)
Query: 86 FTRPHPAVWRMVFGL--SIFYLLALLFLLFQNYETAICRNEDVSETDNIWAGLIAVIFFL 143
F R + ++ GL +I ++L L L + + + F +
Sbjct: 774 FNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTA-------FTV 826
Query: 144 LLISTLAFPNGPFTRPHPAVWRMVFGLSIFYLLALLFLLFQNYETANLRILFFGNYPKKR 203
L++ L +R P + + + LALL ++ L I+F K
Sbjct: 827 LVLIQLLLTLAVRSRGRP-FLSSLLFSNKYLWLALLVIII-----LQLLIIFLPPLNLK- 879
Query: 204 THIFEMPPSHPIVIIRLSFLGIMVAP 229
IF+ P + + +++
Sbjct: 880 --IFQPTPLSLFEWLIAIAVALLLLY 903
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 30.7 bits (70), Expect = 2.8
Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 15/106 (14%)
Query: 135 GLIAVIFFLLLISTLAFPNGPFTRPHPAVWRMVFGLSIFYLLALLFLLFQNYETANLRIL 194
V+ FL + TLA T ++ + YL+ L+ L ++ ANL L
Sbjct: 134 IFALVLAFLSWLGTLA--VLKITS-------LLVFGKVIYLVLLVVYLIPHWNPANLFAL 184
Query: 195 FFGNYPKKRTHIFEMPPSHPIVIIRLSFLGIMVAPSARIDMDKEYG 240
+ + + +P + SF PS M K
Sbjct: 185 PSASQSFWKYLLLAIP------VFVFSFGFHGNIPSLVNYMRKNSK 224
>gnl|CDD|198310 cd03201, GST_C_DHAR, C-terminal, alpha helical domain of
Dehydroascorbate Reductase. Glutathione S-transferase
(GST) C-terminal domain family, Dehydroascorbate
Reductase (DHAR) subfamily; composed of plant-specific
DHARs, which are monomeric enzymes catalyzing the
reduction of DHA into ascorbic acid (AsA) using
glutathione as the reductant. DHAR allows plants to
recycle oxidized AsA before it is lost. AsA serves as a
cofactor of violaxanthin de-epoxidase in the xanthophyll
cycle and as an antioxidant in the detoxification of
reactive oxygen species. Because AsA is the major
reductant in plants, DHAR serves to regulate their redox
state. It has been suggested that a significant portion
of DHAR activity is plastidic, acting to reduce the
large amounts of ascorbate oxidized during hydrogen
peroxide scavenging by ascorbate peroxidase. DHAR
contains a conserved cysteine in its active site and in
addition to its reductase activity, shows thiol
transferase activity similar to glutaredoxins.
Length = 121
Score = 29.3 bits (66), Expect = 2.9
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 244 SDISLE-KIYNHLDVFALGHFVGWAF 268
D+SL K+Y HL V ALGH+ GW+
Sbjct: 61 VDLSLAPKLY-HLRV-ALGHYKGWSV 84
Score = 29.3 bits (66), Expect = 2.9
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 709 SDISLE-KIYNHLDVFALGHFVGWAF 733
D+SL K+Y HL V ALGH+ GW+
Sbjct: 61 VDLSLAPKLY-HLRV-ALGHYKGWSV 84
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 30.9 bits (70), Expect = 2.9
Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 11/112 (9%)
Query: 75 LISTLAFPNGPFTRPHPAVWRMVFGLSIFYLLALLFLLFQNYETAICRNEDVSETDNIWA 134
L P P + L + +L A LF L+Q R WA
Sbjct: 451 PAGALGVDGPPVGTPGETTLLIALALGVLFLGAGLFFLWQFAAGDPLRAAL-------WA 503
Query: 135 GLIAVIFFLLLIST-LAFPNGPFTRPHPAVWRMVFGLSIFYLLALLFLLFQN 185
G+ A++ L+ + LAF N H AV L++ +L +
Sbjct: 504 GIAALVPLYLVAALFLAFGNLARDWLHAAVA---LLLAVVLAGGAEWLARAS 552
>gnl|CDD|221363 pfam11992, DUF3488, Domain of unknown function (DUF3488). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is typically
between 323 to 339 amino acids in length. This domain is
found associated with pfam01841. This domain has a
conserved PLW sequence motif. This domain contains 6
transmembrane helices.
Length = 321
Score = 30.3 bits (69), Expect = 4.0
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 18/91 (19%)
Query: 94 WRMVFGLSIFYLLALLFLLFQNYETAICRNEDVSETDNIWAGLIAVIFFLLLISTLAFPN 153
R++ L F+LLA FL Q+ + L ++ LLL++ L +
Sbjct: 101 ARVLVFLG-FFLLATNFLFSQS----------------LLTALYLLLALLLLLAALVSLH 143
Query: 154 GPFTRPHPAVWR-MVFGLSIFYLLALLFLLF 183
P RP + L L +LFLLF
Sbjct: 144 QPEGRPRQRLRLAGKLLLQALPLALVLFLLF 174
>gnl|CDD|224864 COG1953, FUI1, Cytosine/uracil/thiamine/allantoin permeases
[Nucleotide transport and metabolism / Coenzyme
metabolism].
Length = 497
Score = 30.3 bits (69), Expect = 4.7
Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 38 LLCSIFGVIVASFIRNEDVSETDNIWAGLIAVIFFLLLISTLAFPNGPFTR----PHPAV 93
L G + + VS +++ WA L + ++ +TLA FTR +
Sbjct: 215 ALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKSQKAQI 274
Query: 94 WRMVFGLSIFYLLALLFLLFQNYETAICRNEDVSETDNI---WAGLIAVIFFLLLISTLA 150
W + GL + + L L + + I E + + +I + F L +A
Sbjct: 275 WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVA 334
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 29.9 bits (68), Expect = 5.9
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 10/125 (8%)
Query: 13 FSLINECAVEDISLDVFYKPHTIAALL--CSIFGVIVASFIRNEDVSETDNIWAGLIAVI 70
FS + E + ++ + +L ++ G+I A + V +
Sbjct: 159 FSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPK--VPAAAPEVFDKKKYL 216
Query: 71 FFLLLISTLAFPNGPFTRPHPAVWRMVFGLSIFYLL-ALLFLLFQNYETAICRNEDVSET 129
F LL L R +W + GLS F+ + L F Y + ++ +
Sbjct: 217 FPKLLWRNLK-----LLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQV 271
Query: 130 DNIWA 134
+ A
Sbjct: 272 QYLLA 276
>gnl|CDD|225659 COG3117, COG3117, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 188
Score = 28.9 bits (65), Expect = 6.3
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 641 WLSVMFLLAVLCVYGCVLWHRYVSEILETVVTKKPNRPQRRNEDVFTVFFS 691
W+ ++ LLA L + G +L V P+ P E + T +
Sbjct: 6 WVYLILLLAALALSGWLLGLEQDE---IEQVRPNPDEPAYTMEGLDTTVYD 53
>gnl|CDD|219950 pfam08643, DUF1776, Fungal family of unknown function (DUF1776).
This is a fungal family of unknown function. One of the
proteins in this family has been localised to the
mitochondria.
Length = 298
Score = 29.3 bits (66), Expect = 7.1
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 143 LLLISTLAFPNGPFTRPHPAVWRMVFG--LSIFYLLALLFL-LFQNYETANLRILFF 196
++L+ +L++P+GP P+ W L + L L L + + +++ F
Sbjct: 96 VILVPSLSYPSGPIENIPPSSWASELNTRLLNYILTLQGLLPLLTSRSSQKSKLIVF 152
>gnl|CDD|217413 pfam03188, Cytochrom_B561, Eukaryotic cytochrome b561. Cytochrome
b561 is a secretory vesicle-specific electron transport
protein. It is an integral membrane protein, that binds
two heme groups non-covalently. This is a eukaryotic
family. Members of the 'prokaryotic cytochrome b561'
family can be found in Pfam: PF01292.
Length = 137
Score = 28.3 bits (64), Expect = 7.6
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 35 IAALLCSIFGVIVASFIRNEDVSETDNI-----WAGLIAVIFFLLLIS----TLAFPNGP 85
+ AL+ + G++ + + + W GL VI FLL FP
Sbjct: 43 LLALILGVVGLLAV--FKFHNELGIPHFYSLHSWLGLTTVILFLLQWLSGFALFLFPGLS 100
Query: 86 F-TRPHPAVWRMVFGLSIFYL 105
R W + FGL IF L
Sbjct: 101 RSIRSLLLPWHVFFGLVIFVL 121
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 29.1 bits (66), Expect = 8.5
Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 34 TIAALLCSIFGVIVASFIRNEDVSETDNIWAGLIAVIFFLLLISTLAFPNGPFTRPHP-- 91
TI LL ++ + + + + ++ + A +IA++ + + A + P
Sbjct: 147 TIGGLLVAVIAPPLVALLGGGNGAKGYFLAALIIAILAVVGFLICFAGTKERVSVPPEQK 206
Query: 92 ------AVWRMVFGLSIFYLLALLFLLFQ 114
+++ +F +L LL+LL
Sbjct: 207 EKVSLRDMFKALFKNRPLLILLLLYLLNA 235
>gnl|CDD|217505 pfam03348, Serinc, Serine incorporator (Serinc). This is a family
of eukaryotic membrane proteins which incorporate serine
into membranes and facilitate the synthesis of the
serine-derived lipids phosphatidylserine and
sphingolipid. Members of this family contain 11
transmembrane domains and form intracellular complexes
with key enzymes involved in serine and sphingolipid
biosynthesis.
Length = 428
Score = 29.1 bits (66), Expect = 8.6
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 28/100 (28%)
Query: 92 AVWRMVFGLSIFYLLALLFLLFQNYETAICRNEDVSETDNIWAGL-----IAVIFFLLLI 146
AV+R+ F L++F+L+ L +L V + + A + I L+ +
Sbjct: 74 AVYRVCFALALFFLILALLML------------GVKSSKDPRAAIQNGFWFFKILLLIGL 121
Query: 147 STLAF--PNGPFTRPHPAVWRMVFGLSIFYLLALLFLLFQ 184
AF PNG F M G+ + + LF+L Q
Sbjct: 122 IVGAFFIPNGFFF-----FVWMYIGV----IGSFLFILIQ 152
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database
nomenclature); composed of cysteine peptidases (CPs)
similar to papain, including the mammalian CPs
(cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain
is an endopeptidase with specific substrate preferences,
primarily for bulky hydrophobic or aromatic residues at
the S2 subsite, a hydrophobic pocket in papain that
accommodates the P2 sidechain of the substrate (the
second residue away from the scissile bond). Most
members of the papain subfamily are endopeptidases. Some
exceptions to this rule can be explained by specific
details of the catalytic domains like the occluding loop
in cathepsin B which confers an additional
carboxydipeptidyl activity and the mini-chain of
cathepsin H resulting in an N-terminal exopeptidase
activity. Papain-like CPs have different functions in
various organisms. Plant CPs are used to mobilize
storage proteins in seeds. Parasitic CPs act
extracellularly to help invade tissues and cells, to
hatch or to evade the host immune system. Mammalian CPs
are primarily lysosomal enzymes with the exception of
cathepsin W, which is retained in the endoplasmic
reticulum. They are responsible for protein degradation
in the lysosome. Papain-like CPs are synthesized as
inactive proenzymes with N-terminal propeptide regions,
which are removed upon activation. In addition to its
inhibitory role, the propeptide is required for proper
folding of the newly synthesized enzyme and its
stabilization in denaturing pH conditions. Residues
within the propeptide region also play a role in the
transport of the proenzyme to lysosomes or acidified
vesicles. Also included in this subfamily are proteins
classified as non-peptidase homologs, which lack
peptidase activity or have missing active site residues.
Length = 210
Score = 28.7 bits (65), Expect = 8.8
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 444 CWIYGAIQLTEALLCIKNGKLL 465
CW + + E IK GKL+
Sbjct: 24 CWAFSTVGALEGAYAIKTGKLV 45
Score = 28.7 bits (65), Expect = 8.8
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 529 CWIYGAIQLTEALLCIKNGKLL 550
CW + + E IK GKL+
Sbjct: 24 CWAFSTVGALEGAYAIKTGKLV 45
Score = 28.7 bits (65), Expect = 8.8
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 608 CWIYGAIQLTEALLCIKNGKLL 629
CW + + E IK GKL+
Sbjct: 24 CWAFSTVGALEGAYAIKTGKLV 45
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.332 0.144 0.480
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 40,277,544
Number of extensions: 4118857
Number of successful extensions: 6968
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6717
Number of HSP's successfully gapped: 346
Length of query: 760
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 656
Effective length of database: 6,324,786
Effective search space: 4149059616
Effective search space used: 4149059616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 63 (28.1 bits)