RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15746
(760 letters)
>g1k3b.1 d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase I),
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 30.7 bits (68), Expect = 0.48
Identities = 9/87 (10%), Positives = 21/87 (24%), Gaps = 9/87 (10%)
Query: 444 CWIYGAIQLTEALLCIKNGKLLFGRTQAVNILAWLSVMFLLAVLCVYGCVLWHRYVSVMF 503
C+ + ++ + EA + I + LS +++ +
Sbjct: 28 CYSFASMGMLEARIRILTNN---------SQTPILSPQEVVSCSQYAQGCEGGFPYLIAG 78
Query: 504 FYCPYFDRQYYSFVTDTQCKRLGTQCW 530
Y F + T
Sbjct: 79 KYAQDFGLVEEACFPYTGTDSPCKMKE 105
Score = 27.3 bits (59), Expect = 7.3
Identities = 12/133 (9%), Positives = 33/133 (24%), Gaps = 16/133 (12%)
Query: 608 CWIYGAIQLTEALLCIKNGKLLFGRTQAVNILAWLSVMFLLAVLCVYGCVLWH------- 660
C+ + ++ + EA + I + LS +++
Sbjct: 28 CYSFASMGMLEARIRILTNN---------SQTPILSPQEVVSCSQYAQGCEGGFPYLIAG 78
Query: 661 RYVSEILETVVTKKPNRPQRRNEDVFTVFFSKSNNFRIDMDKEYGVNCSDISLEKIYNHL 720
+Y + P + F ++ + YG + ++ +H
Sbjct: 79 KYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHG 138
Query: 721 DVFALGHFVGWAF 733
+
Sbjct: 139 PMAVAFEVYDDFL 151
>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica
papaya) [TaxId: 3649]}
Length = 216
Score = 30.0 bits (66), Expect = 0.82
Identities = 16/101 (15%), Positives = 27/101 (26%), Gaps = 1/101 (0%)
Query: 444 CWIYGAIQLTEALLCIKNGKLLFGRTQAVNILAWLSVMFLLAVLCVYGCVLWHRYVSVMF 503
CW + A+ E + I+ GKL+ Q + + Y + +
Sbjct: 25 CWAFSAVATVEGINKIRTGKLVELSEQEL-VDCERRSHGCKGGYPPYALEYVAKNGIHLR 83
Query: 504 FYCPYFDRQYYSFVTDTQCKRLGTQCWIYGAIQLTEALLCI 544
PY +Q + T LL
Sbjct: 84 SKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNA 124
Score = 28.4 bits (62), Expect = 2.9
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Query: 608 CWIYGAIQLTEALLCIKNGKLLFGRTQAVNILAWLSVMFLLAVLCVYGCVLWHRYVSEIL 667
CW + A+ E + I+ GKL+ Q ++ + + L
Sbjct: 25 CWAFSAVATVEGINKIRTGKLVELSEQ--ELVDCERRSHGCKGGYPPYALEYVAKNGIHL 82
Query: 668 ETVVTKKPNRPQRRNEDVFTVFFSKSNNFRIDMD 701
+ K + R + V S R+ +
Sbjct: 83 RSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPN 116
Score = 26.5 bits (57), Expect = 9.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 529 CWIYGAIQLTEALLCIKNGKLLFGRTQ 555
CW + A+ E + I+ GKL+ Q
Sbjct: 25 CWAFSAVATVEGINKIRTGKLVELSEQ 51
>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens)
[TaxId: 9606]}
Length = 215
Score = 29.2 bits (64), Expect = 1.5
Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 1/100 (1%)
Query: 444 CWIYGAIQLTEALLCIKNGKLLFGRTQAVNILAWLSVMFLLAVLCVYGCVLWHRYVSVMF 503
CW + ++ E L K GKLL Q + + +
Sbjct: 25 CWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS-ENDGCGGGYMTNAFQYVQKNRGIDS 83
Query: 504 FYCPYFDRQYYSFVTDTQCKRLGTQCWIYGAIQLTEALLC 543
+ Q S + + K + + +AL
Sbjct: 84 EDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKR 123
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Query: 529 CWIYGAIQLTEALLCIKNGKLL-FGRTQAVNILAWLSVMFLLAVLCVYGCVLWHRYVSIL 587
CW + ++ E L K GKLL V+ ++ + + V +R +
Sbjct: 25 CWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSE 84
Query: 588 KYRQYYSFVTDTQCKRLGTQCWIYG 612
Y G G
Sbjct: 85 DAYPYVGQEESCMYNPTGKAAKCRG 109
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 29.2 bits (64), Expect = 2.0
Identities = 24/233 (10%), Positives = 60/233 (25%), Gaps = 5/233 (2%)
Query: 193 ILFFGNYPKKRTHIFEMPPSHPIVIIRLSFLGIMVAPSARIDMDKEYGVNCSDISLEKIY 252
+ F G + + S I I + +AP R+ E V + +
Sbjct: 173 LSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCL 232
Query: 253 NHLDVFALGHFVGWAFKAVLIRHMGILWAMSVMWEFTEIAFAHLLPNFIECWWDALILDI 312
++ + + A +I + + + ++ F L + L+ ++
Sbjct: 233 EEVEDLIVKYRKKKKTVAGII--VEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEV 290
Query: 313 LLCNGIGIWVGLKLCKWFEMREYKWVSIKDI---HSTSGKLKRAMLQFTPQSWTHVRWLD 369
G + K + + R + +
Sbjct: 291 QTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSK 350
Query: 370 PTCTYMRFIGVCQMVLFWQLSELNTFFLKHIFEMPPSHPIVIIRLSFLGIMVA 422
+ + L + L + ++ +P I R+ G +
Sbjct: 351 NLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCS 403
>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum
[TaxId: 5833]}
Length = 241
Score = 28.7 bits (63), Expect = 2.2
Identities = 12/89 (13%), Positives = 29/89 (32%)
Query: 444 CWIYGAIQLTEALLCIKNGKLLFGRTQAVNILAWLSVMFLLAVLCVYGCVLWHRYVSVMF 503
CW + +I E+ I+ KL+ Q + ++ + ++ +
Sbjct: 42 CWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIELGGICPD 101
Query: 504 FYCPYFDRQYYSFVTDTQCKRLGTQCWIY 532
PY D ++ G + ++
Sbjct: 102 GDYPYVSDAPNLCNIDRCTEKYGIKNYLS 130
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 100
Score = 27.2 bits (60), Expect = 2.2
Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 303 CWWDALILDILLCNGIGIWVGLKLCKWFEMREYKWVSIKDIHSTSGKLKR 352
W A I ++ +F E ++ KD+ ++
Sbjct: 24 PHWPARIDEMPEAAVKSTA-NKYQVFFFGTHETAFLGPKDLFPYEESKEK 72
>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens)
[TaxId: 9606]}
Length = 217
Score = 28.4 bits (62), Expect = 2.5
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 444 CWIYGAIQLTEALLCIKNGKLLFGRTQAVNILAWLSVMFLLAVLCVYGCVLWHRYVSVMF 503
CW + A+ EA L +K GKL+ Q + + G + + ++
Sbjct: 25 CWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGN----KGCNGGFMTTAFQYIID 80
Query: 504 FYCPYFDRQYYSFVTDTQCKRLGTQCWIY 532
D Y D +C+
Sbjct: 81 NKGIDSDASYPYKAMDQKCQYDSKYRAAT 109
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}
Length = 212
Score = 28.5 bits (62), Expect = 2.5
Identities = 20/152 (13%), Positives = 39/152 (25%), Gaps = 8/152 (5%)
Query: 444 CWIYGAIQLTEALLCIKNGKLLFGRTQAVNILAWLSVMFLLAVLCVYGCVLWHRYVSVMF 503
CW + A+ E ++ I+ G L Q + S C G + +
Sbjct: 25 CWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSYG------CNGGYPWSALQLVAQY 78
Query: 504 FYCPYFDRQYYSFVTDTQCKRLGTQCWIYGAIQLTEALLCIKNGKLLFGRTQAVNILAWL 563
Y + + G ++ + + + +V + A
Sbjct: 79 GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAG 138
Query: 564 SVMFLLAVLCVYGCVLWHR--YVSILKYRQYY 593
L G V+ + Y Y
Sbjct: 139 KDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNY 170
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia
coronaria) [TaxId: 52861]}
Length = 208
Score = 28.0 bits (61), Expect = 3.1
Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 7/90 (7%)
Query: 444 CWIYGAIQLTEALLCIKNGKLLFGRTQAVNILAWLSVMFLLAVLCVYGCVLWHRYVSVMF 503
CW + + E++ I+ G L+ Q + + G Y ++
Sbjct: 25 CWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNH-------GCLGGAFVFAYQYIIN 77
Query: 504 FYCPYFDRQYYSFVTDTQCKRLGTQCWIYG 533
Y C+ I G
Sbjct: 78 NGGIDTQANYPYKAVQGPCQAASKVVSIDG 107
>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 214
Score = 28.0 bits (61), Expect = 4.0
Identities = 9/89 (10%), Positives = 19/89 (21%)
Query: 444 CWIYGAIQLTEALLCIKNGKLLFGRTQAVNILAWLSVMFLLAVLCVYGCVLWHRYVSVMF 503
CW + E + G LL Q + + + + + +
Sbjct: 25 CWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLGGLETE 84
Query: 504 FYCPYFDRQYYSFVTDTQCKRLGTQCWIY 532
Y + + K
Sbjct: 85 DDYSYQGHMQSCQFSAEKAKVYIQDSVEL 113
>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId:
3649]}
Length = 218
Score = 27.6 bits (60), Expect = 5.1
Identities = 16/96 (16%), Positives = 24/96 (25%), Gaps = 7/96 (7%)
Query: 444 CWIYGAIQLTEALLCIKNGKLLFGRTQAVNILAWLSVMFLLAVLCVYGCVLWHRYVSVMF 503
CW + I E + I G LL Q L + C G
Sbjct: 25 CWAFSTIATVEGINKIVTGNLLELSEQ------ELVDCDKHSYGCKGGYQTTSLQYVANN 78
Query: 504 FYCPYFDRQYYS-FVTDTQCKRLGTQCWIYGAIQLT 538
Y + + G + I G ++
Sbjct: 79 GVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVP 114
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 137
Score = 26.9 bits (59), Expect = 5.6
Identities = 7/49 (14%), Positives = 20/49 (40%)
Query: 304 WWDALILDILLCNGIGIWVGLKLCKWFEMREYKWVSIKDIHSTSGKLKR 352
WW A+++ + G++ +WF ++ +S + + +
Sbjct: 24 WWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVALGLFSQH 72
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean
(Ricinus communis) [TaxId: 3988]}
Length = 224
Score = 27.3 bits (59), Expect = 5.7
Identities = 17/101 (16%), Positives = 25/101 (24%), Gaps = 1/101 (0%)
Query: 444 CWIYGAIQLTEALLCIKNGKLLFGRTQAVNILAWLSVMFLLAVLCVYGCVLWHRYVSVMF 503
CW + I E + IK KL+ Q + L Y + +
Sbjct: 26 CWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGITT 85
Query: 504 -FYCPYFDRQYYSFVTDTQCKRLGTQCWIYGAIQLTEALLC 543
PY V+ + ALL
Sbjct: 86 EANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLK 126
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma)
subunit {Escherichia coli [TaxId: 562]}
Length = 216
Score = 27.0 bits (59), Expect = 7.3
Identities = 10/125 (8%), Positives = 33/125 (26%), Gaps = 1/125 (0%)
Query: 62 IWAGLIAVIFFLLLISTLAFPNGPFTRPHPAVWRMVFGLSIFYLLALLFLLFQNYETAIC 121
+ + FFL+ +S ++F G + + + + +
Sbjct: 15 ACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMF-MFVR 73
Query: 122 RNEDVSETDNIWAGLIAVIFFLLLISTLAFPNGPFTRPHPAVWRMVFGLSIFYLLALLFL 181
L+ ++ L G + ++ + + L+ + +
Sbjct: 74 FVHHNIPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVII 133
Query: 182 LFQNY 186
+
Sbjct: 134 WRPYF 138
>g8pch.1 d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [TaxId:
9823]}
Length = 228
Score = 26.8 bits (58), Expect = 7.7
Identities = 17/168 (10%), Positives = 37/168 (22%), Gaps = 11/168 (6%)
Query: 444 CWIYGAIQLTEALLCIKNGKLLFGRTQ-AVNILAWLSVMFLLAVLCVYGCVLWHRYVSVM 502
CW + E+ + I GK+L Q V+ + L +M
Sbjct: 34 CWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIM 93
Query: 503 FFYCPYFDRQYYSFVTDTQCKRLGTQCWIYGAIQLTEALLCIKNGKLLFGRTQAVNILAW 562
+ Q + + EA++ +
Sbjct: 94 GEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVA----LYNPVSFAFEVT 149
Query: 563 LSVMFLLAVLCVYGCVLWHRYVSILKYRQYYSFVTDTQCKRLGTQCWI 610
+ + + ++ + + G WI
Sbjct: 150 NDFLM------YRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWI 191
Score = 26.8 bits (58), Expect = 8.9
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 608 CWIYGAIQLTEALLCIKNGKLLFGRTQ 634
CW + E+ + I GK+L Q
Sbjct: 34 CWTFSTTGALESAVAIATGKMLSLAEQ 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.332 0.144 0.480
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,061,645
Number of extensions: 147058
Number of successful extensions: 436
Number of sequences better than 10.0: 1
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 48
Length of query: 760
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 668
Effective length of database: 1,144,436
Effective search space: 764483248
Effective search space used: 764483248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.5 bits)