Query psy15747
Match_columns 224
No_of_seqs 106 out of 128
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 20:20:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2735|consensus 100.0 1.6E-88 3.5E-93 629.5 11.0 211 1-215 223-433 (466)
2 PF03034 PSS: Phosphatidyl ser 100.0 1.1E-82 2.4E-87 571.9 12.6 172 1-176 109-280 (280)
3 PLN02930 CDP-diacylglycerol-se 100.0 1E-80 2.2E-85 572.9 14.7 178 1-182 175-353 (353)
4 PF07860 CCD: WisP family C-Te 41.1 39 0.00084 27.7 3.6 40 110-149 86-134 (141)
5 PF12270 Cyt_c_ox_IV: Cytochro 24.8 1.4E+02 0.003 25.1 4.4 49 18-74 41-89 (137)
6 PF04892 VanZ: VanZ like famil 20.4 84 0.0018 24.2 2.3 22 21-43 108-129 (133)
7 PRK14749 hypothetical protein; 20.3 1.8E+02 0.0038 18.6 3.2 23 14-36 2-24 (30)
8 COG4858 Uncharacterized membra 18.9 6.2E+02 0.013 22.8 7.5 67 92-164 101-170 (226)
9 PF04064 DUF384: Domain of unk 17.8 61 0.0013 23.2 0.8 26 124-149 10-35 (58)
10 TIGR03049 PS_I_psaK photosyste 16.3 1.1E+02 0.0024 23.6 1.9 20 20-39 17-36 (81)
No 1
>KOG2735|consensus
Probab=100.00 E-value=1.6e-88 Score=629.47 Aligned_cols=211 Identities=47% Similarity=1.006 Sum_probs=207.4
Q ss_pred CcccccCCCCccchhhHHHHHHHhhhhHHHHHHHHhhhhccceeeeeeeecccCCCcccccccCCCCCCCCCCcceeecC
Q psy15747 1 IAFAHLLPNFIECWWDALILDILLCNGIGIWVGLKLCKWFEMREYKWVSIKDIHSTSGKAKAGHASPVQPPQSWTHVRWL 80 (224)
Q Consensus 1 itfqH~LPNF~ECWWDh~iLDVLiCN~lGI~lGm~~~~~l~~k~Y~W~g~~~i~s~~gK~kr~~~~~QFtP~sw~~~~W~ 80 (224)
++|+|+||||+||||||+|||||+|||+|||+||++||+|+||+|+|.|++||||++||+|| ++.||||+||+++||.
T Consensus 223 ~~f~hlLPNFaECWWD~iILDVLiCNglGI~~Gmk~c~~L~mrty~W~sik~i~t~~GK~KR--~~lQFTPasW~~~~W~ 300 (466)
T KOG2735|consen 223 LTFRHLLPNFAECWWDSIILDVLICNGLGIWAGMKTCRWLSMRTYHWESIKNIPTTRGKMKR--AALQFTPASWSKFEWH 300 (466)
T ss_pred HHHHHHCccHHHHHHHHHHHHheecccchhhhHhHHHhhhcccceeeeeeccCcccchhHHH--HhhccCcccccccccc
Confidence 58999999999999999999999999999999999999999999999999999999999999 9999999999999995
Q ss_pred CCCcchhHHHHHHHHHHHHHHHhhhhhHHHhHhhccCCCCchHHHHHHHHHHhhhhHHHHHHHhhcCCCccccchhHHHH
Q psy15747 81 DPTCTYMRIHWCVPKMVLFWQLSELNTFFLKHIFEMPPSHPIVIIRLSFLGIMVAPSARQYYSFVTDTQCKRLGTQCWIY 160 (224)
Q Consensus 81 ~~~ss~~R~l~~v~~l~~~~~l~ELN~FFLK~~Lwipp~h~l~~~RL~l~~l~~~pa~rEyY~yitd~~~krlG~~~Wl~ 160 (224)
|.||++|++ +|+.++++||++|||||||||+|||||+||++++||++++++++|++||||.|+||+.|||+|+|||++
T Consensus 301 -p~ss~~R~~-~V~~lviiwlltELNTFFlKhvf~ipp~Hpvv~~RlIli~~i~aptiRqyy~y~tD~~~KrvG~qcWv~ 378 (466)
T KOG2735|consen 301 -PASSLRRFA-AVYTLVIIWLLTELNTFFLKHVFWIPPKHPVVLWRLILIALIAAPTIRQYYVYLTDKPCKRVGMQCWVF 378 (466)
T ss_pred -cchHHHHHH-HHHHHHHHHHHHHHHHHHHheeEecCCCCceeehhHHHHHhhccchHHHHHHHccCchhhhcchhHHHH
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhhhCCCccCCccchhhhHHHHHHHHHHHHHhhhhheeeehhccC
Q psy15747 161 GAIQLTEALLCIKNGKLLFGRTQAVNILAWLSVMFLLAVLCVYGCVLWHRYVSVS 215 (224)
Q Consensus 161 ~ai~~~E~li~iKfg~~~f~~~~~~~iv~W~~~~~~~s~~~v~~~~~~~~~~~~~ 215 (224)
+||+++|++||||||+++|+.|++.+|+.|+..+++.++.|+|.+++|+++-+++
T Consensus 379 ~aI~~~El~IciKfg~~~f~~t~~~~Ivlw~l~~v~~t~~~v~~~v~~~~~~~t~ 433 (466)
T KOG2735|consen 379 LAICALELLICIKFGSHMFIKTQINYIVLWLLMGVIGTFTCVLLAVWWAERKGTT 433 (466)
T ss_pred HHHHHHHhhhheeeCCceeeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999999999999999999999999999998655
No 2
>PF03034 PSS: Phosphatidyl serine synthase; InterPro: IPR004277 Phosphatidyl serine synthase is also known as serine exchange enzyme (2.7.8 from EC). This family represents eukaryotic PSS I and II, membrane bound proteins that catalyse the replacement of the head group of a phospholipid (phosphotidylcholine or phosphotidylethanolamine) by L-serine.; GO: 0006659 phosphatidylserine biosynthetic process
Probab=100.00 E-value=1.1e-82 Score=571.94 Aligned_cols=172 Identities=51% Similarity=1.027 Sum_probs=168.9
Q ss_pred CcccccCCCCccchhhHHHHHHHhhhhHHHHHHHHhhhhccceeeeeeeecccCCCcccccccCCCCCCCCCCcceeecC
Q psy15747 1 IAFAHLLPNFIECWWDALILDILLCNGIGIWVGLKLCKWFEMREYKWVSIKDIHSTSGKAKAGHASPVQPPQSWTHVRWL 80 (224)
Q Consensus 1 itfqH~LPNF~ECWWDh~iLDVLiCN~lGI~lGm~~~~~l~~k~Y~W~g~~~i~s~~gK~kr~~~~~QFtP~sw~~~~W~ 80 (224)
+||||+||||+||||||+|||||+||++||++||++|||||||+|+|+|++|+|+++||+|| +++||||+||++|||
T Consensus 109 lsf~h~LPnF~ECWWD~~iLDvl~CN~~Gi~~Gm~~~~~l~~k~Y~W~g~~~~~~~~gk~kr--~~~QFtP~sw~~~~W- 185 (280)
T PF03034_consen 109 LSFQHLLPNFNECWWDHWILDVLICNGLGIWLGMKTCRYLEMKEYDWRGIRDIPTYRGKLKR--ALLQFTPYSWTKYEW- 185 (280)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCccccccccCCchhHHHHH--HHHccCCCcCccccc-
Confidence 58999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHhhhhhHHHhHhhccCCCCchHHHHHHHHHHhhhhHHHHHHHhhcCCCccccchhHHHH
Q psy15747 81 DPTCTYMRIHWCVPKMVLFWQLSELNTFFLKHIFEMPPSHPIVIIRLSFLGIMVAPSARQYYSFVTDTQCKRLGTQCWIY 160 (224)
Q Consensus 81 ~~~ss~~R~l~~v~~l~~~~~l~ELN~FFLK~~Lwipp~h~l~~~RL~l~~l~~~pa~rEyY~yitd~~~krlG~~~Wl~ 160 (224)
.+++|++|++ ++++++++++++|||+|||||+|||||+||+|++||++|+++|+||+||||+|+|||++||+|+|||++
T Consensus 186 ~~~~s~~rf~-~v~~l~~~~ll~ELN~FFLK~vLwIPp~H~Lv~~RL~l~~li~~pAiREyY~yitd~~~krlG~~~Wl~ 264 (280)
T PF03034_consen 186 KPFSSPKRFL-QVLFLLIVFLLSELNTFFLKHVLWIPPSHPLVIYRLLLWFLIGAPAIREYYEYITDPNCKRLGQQAWLL 264 (280)
T ss_pred CCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhheecCCCCccHHHHHHHHHHHHHHHHHHHHHHccCCccccchhHHHHH
Confidence 5677899999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhhhCC
Q psy15747 161 GAIQLTEALLCIKNGK 176 (224)
Q Consensus 161 ~ai~~~E~li~iKfg~ 176 (224)
+||+++|++||+|||+
T Consensus 265 ~ai~~~E~LI~iKfg~ 280 (280)
T PF03034_consen 265 IAILFTELLICIKFGR 280 (280)
T ss_pred HHHHHHHHHHhhccCC
Confidence 9999999999999995
No 3
>PLN02930 CDP-diacylglycerol-serine O-phosphatidyltransferase
Probab=100.00 E-value=1e-80 Score=572.93 Aligned_cols=178 Identities=39% Similarity=0.822 Sum_probs=175.3
Q ss_pred CcccccCCCCccchhhHHHHHHHhhhhHHHHHHHHhhhhccceeeeeeeecccCCCcccccccCCCCCCCCCCcceeecC
Q psy15747 1 IAFAHLLPNFIECWWDALILDILLCNGIGIWVGLKLCKWFEMREYKWVSIKDIHSTSGKAKAGHASPVQPPQSWTHVRWL 80 (224)
Q Consensus 1 itfqH~LPNF~ECWWDh~iLDVLiCN~lGI~lGm~~~~~l~~k~Y~W~g~~~i~s~~gK~kr~~~~~QFtP~sw~~~~W~ 80 (224)
+||||+||||+||||||||||||+||++||++||++|||||||+|||+|++++++.+||+|| ++.||||+||++|||
T Consensus 175 lsf~H~LPNF~ECWWDhiiLDVL~CN~lGI~lGm~~~k~l~~k~Y~W~g~~~~~~~~gk~kR--~l~qFTP~sw~~~~W- 251 (353)
T PLN02930 175 LTFRHMLPNFNECWWDSIVLDVLICNWFGIWAGMHTVKYFDGKTYEWVGISRQPNIIGKVKR--TLGQFTPAQWDKDEW- 251 (353)
T ss_pred HHHHHHCCchHHHHhHHHHHHHHHhhHHHHHHHHHHHHHcCCccccccccCCCCcccchhhh--HHhccCccccccccc-
Confidence 58999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHhhhhhHHHhHhhccCCCCchHHHHHHHHHHhhhhHHHHHHHhhcCCC-ccccchhHHH
Q psy15747 81 DPTCTYMRIHWCVPKMVLFWQLSELNTFFLKHIFEMPPSHPIVIIRLSFLGIMVAPSARQYYSFVTDTQ-CKRLGTQCWI 159 (224)
Q Consensus 81 ~~~ss~~R~l~~v~~l~~~~~l~ELN~FFLK~~Lwipp~h~l~~~RL~l~~l~~~pa~rEyY~yitd~~-~krlG~~~Wl 159 (224)
+|++|++||+ ++++++++++++|||+||||++|||||+||+|++||++|+++|+||+||||+|+|||+ +||+|+|||+
T Consensus 252 ~~~~s~~rf~-~v~~l~~~~~l~eLN~FFLK~~L~ipp~h~l~~~Rl~l~~~i~~~a~rEyY~yitd~~~~krlG~~~Wl 330 (353)
T PLN02930 252 HPLQGPWRFL-QVLFLCVVFLTVELNTFFLKFCLWIPPRNPLIVYRLILWWLIAIPTIREYNSFLQDRKPVKKLGAFCWL 330 (353)
T ss_pred CCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccccccchhhHH
Confidence 7999999999 9999999999999999999999999999999999999999999999999999999998 7999999999
Q ss_pred HHHHHHHHHhhHhhhCCCccCCc
Q psy15747 160 YGAIQLTEALLCIKNGKLLFGRT 182 (224)
Q Consensus 160 ~~ai~~~E~li~iKfg~~~f~~~ 182 (224)
.+||+++|++||+|||+++|++|
T Consensus 331 ~~ai~~~E~li~iK~g~~lf~~p 353 (353)
T PLN02930 331 SLAICIVELLICIKFGHGLFPKP 353 (353)
T ss_pred HHHHHHHHHHHHHHhcccccCCC
Confidence 99999999999999999999976
No 4
>PF07860 CCD: WisP family C-Terminal Region; InterPro: IPR012421 This entry represents the C-terminal domain found in the Tropheryma whipplei WisP family of proteins [].
Probab=41.08 E-value=39 Score=27.66 Aligned_cols=40 Identities=23% Similarity=0.481 Sum_probs=27.7
Q ss_pred HhHhhccCCCCchHHHHHHHHHHhh---------hhHHHHHHHhhcCCC
Q psy15747 110 LKHIFEMPPSHPIVIIRLSFLGIMV---------APSARQYYSFVTDTQ 149 (224)
Q Consensus 110 LK~~Lwipp~h~l~~~RL~l~~l~~---------~pa~rEyY~yitd~~ 149 (224)
.|---+-||+||+-..---+=..-| ..+.+.|+.|+||..
T Consensus 86 vkrdtqkppehplksvneqiktvtgavnnfqksvltslkdfftyltdta 134 (141)
T PF07860_consen 86 VKRDTQKPPEHPLKSVNEQIKTVTGAVNNFQKSVLTSLKDFFTYLTDTA 134 (141)
T ss_pred eeccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 3555677888888776654444333 357889999999974
No 5
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=24.83 E-value=1.4e+02 Score=25.08 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=34.5
Q ss_pred HHHHHHhhhhHHHHHHHHhhhhccceeeeeeeecccCCCcccccccCCCCCCCCCCc
Q psy15747 18 LILDILLCNGIGIWVGLKLCKWFEMREYKWVSIKDIHSTSGKAKAGHASPVQPPQSW 74 (224)
Q Consensus 18 ~iLDVLiCN~lGI~lGm~~~~~l~~k~Y~W~g~~~i~s~~gK~kr~~~~~QFtP~sw 74 (224)
++|-.++|=.+|.++++ +.|..+.|+=|+..- +|..-.| .+..|+|.||
T Consensus 41 L~ls~~l~~mig~yl~~-~~rr~~~rPED~~da-EI~dgAG------e~GfFsP~Sw 89 (137)
T PF12270_consen 41 LVLSGGLALMIGFYLRF-TARRIGPRPEDREDA-EIADGAG------ELGFFSPHSW 89 (137)
T ss_pred HHHHHHHHHHHHHHHHH-HHhhCCCCCcccccc-ccccCCC------CcCcCCCccH
Confidence 56667777778888775 677779888888762 2222221 6788999997
No 6
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=20.40 E-value=84 Score=24.25 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=17.7
Q ss_pred HHHhhhhHHHHHHHHhhhhccce
Q psy15747 21 DILLCNGIGIWVGLKLCKWFEMR 43 (224)
Q Consensus 21 DVLiCN~lGI~lGm~~~~~l~~k 43 (224)
|| ++|++|..+|..+.+.+.-+
T Consensus 108 Dv-~~n~~G~~lG~~l~~~~~~~ 129 (133)
T PF04892_consen 108 DV-LANTLGALLGYLLYRLIRKR 129 (133)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHH
Confidence 44 79999999999988876543
No 7
>PRK14749 hypothetical protein; Provisional
Probab=20.34 E-value=1.8e+02 Score=18.60 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.2
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHh
Q psy15747 14 WWDALILDILLCNGIGIWVGLKL 36 (224)
Q Consensus 14 WWDh~iLDVLiCN~lGI~lGm~~ 36 (224)
|-=.|||-+++.-.+||.-+|+.
T Consensus 2 WYfaWiLG~~lAc~f~ilna~w~ 24 (30)
T PRK14749 2 WYLLWFVGILLMCSLSTLVLVWL 24 (30)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 55689999999999999999875
No 8
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=18.87 E-value=6.2e+02 Score=22.84 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhhhhHHHhHhhccCCCCchHHHHHHHHHHhhhhHHHHHHHhhcCCC---ccccchhHHHHHHHH
Q psy15747 92 CVPKMVLFWQLSELNTFFLKHIFEMPPSHPIVIIRLSFLGIMVAPSARQYYSFVTDTQ---CKRLGTQCWIYGAIQ 164 (224)
Q Consensus 92 ~v~~l~~~~~l~ELN~FFLK~~Lwipp~h~l~~~RL~l~~l~~~pa~rEyY~yitd~~---~krlG~~~Wl~~ai~ 164 (224)
+++++-++.+++-+.+||-|... -.-+.-|++.++.|.-|.--.|.|+..++ ..|-|..-.+..+++
T Consensus 101 sLl~lg~~aLlsgitaff~~nA~------~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~ 170 (226)
T COG4858 101 SLLFLGAMALLSGITAFFQKNAQ------VYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVL 170 (226)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCc------chhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHH
Confidence 44566777889999999998732 12344455666666666665566665443 344454444444433
No 9
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=17.76 E-value=61 Score=23.22 Aligned_cols=26 Identities=19% Similarity=0.056 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhcCCC
Q psy15747 124 IIRLSFLGIMVAPSARQYYSFVTDTQ 149 (224)
Q Consensus 124 ~~RL~l~~l~~~pa~rEyY~yitd~~ 149 (224)
.+|-.++..-+-|-+||+|.+-+|+.
T Consensus 10 ~GR~~lR~~~vY~IlRe~h~~E~d~~ 35 (58)
T PF04064_consen 10 EGREYLREKGVYPILRELHKWEEDEE 35 (58)
T ss_pred HHHHHHHHcCchHHHHHHHhccCCHH
Confidence 47888999999999999999999985
No 10
>TIGR03049 PS_I_psaK photosystem I reaction center subunit PsaK. Members of this protein family are the PsaK of the photosystem I reaction center. Photosystems I and II occur together in the same sets of organisms. Photosystem I uses light energy to transfer electrons from plastocyanin to ferredoxin, while photosystem II uses light energy to split water and releases molecular oxygen.
Probab=16.30 E-value=1.1e+02 Score=23.64 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=16.8
Q ss_pred HHHHhhhhHHHHHHHHhhhh
Q psy15747 20 LDILLCNGIGIWVGLKLCKW 39 (224)
Q Consensus 20 LDVLiCN~lGI~lGm~~~~~ 39 (224)
+=..+||.+.|.+|-.+.|+
T Consensus 17 iIMI~cNilai~igk~~I~~ 36 (81)
T TIGR03049 17 IIMILCNVLAIAIGRYTIQY 36 (81)
T ss_pred hhhhHHHHHHHHHHHHHHcC
Confidence 44679999999999888865
Done!