RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15747
         (224 letters)



>1y1u_A Signal transducer and activator of transcription; STAT,
           DNA-binding, SH2 domain, transcription REGU signaling
           protein; 3.21A {Mus musculus}
          Length = 585

 Score = 31.7 bits (71), Expect = 0.20
 Identities = 26/134 (19%), Positives = 44/134 (32%), Gaps = 14/134 (10%)

Query: 69  QPPQSWTHVRWLDPTCTYMRIHWCVPKMVLFWQLSE-LNTFFLKHIFEMPP--SHPIVII 125
           Q   +   V W +      R+ + VP  VL+ QL E LN  F   +          +V +
Sbjct: 347 QDHNATATVLWDNAFAEPGRVPFAVPDKVLWPQLCEALNMKFKAEVQSNRGLTKENLVFL 406

Query: 126 RLSFLGIMVAPSARQYYSFVTDTQCKRLGTQ-------CWIYGAIQLT-EALLCIKNGKL 177
                 I            V+ +Q  R            W  G +++  +      N   
Sbjct: 407 AQKLFNISSNHLEDYNSMSVSWSQFNRENLPGWNYTFWQWFDGVMEVLKKHHKPHWNDGA 466

Query: 178 LFG---RTQAVNIL 188
           + G   + QA ++L
Sbjct: 467 ILGFVNKQQAHDLL 480


>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel
          followed by five-helix bundle; HET: DNA; 1.80A {Mus
          musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
          Length = 147

 Score = 28.6 bits (63), Expect = 1.1
 Identities = 7/48 (14%), Positives = 21/48 (43%)

Query: 14 WWDALILDILLCNGIGIWVGLKLCKWFEMREYKWVSIKDIHSTSGKAK 61
          WW A+++     +      G++  +WF   ++  +S   + +    ++
Sbjct: 27 WWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVALGLFSQ 74


>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase,
          methylysine binding, STR genomics consortium, SGC,
          alternative promoter usage; HET: DNA BTB; 2.30A {Homo
          sapiens}
          Length = 154

 Score = 27.5 bits (60), Expect = 2.6
 Identities = 7/42 (16%), Positives = 15/42 (35%)

Query: 14 WWDALILDILLCNGIGIWVGLKLCKWFEMREYKWVSIKDIHS 55
          WW   I+   +        G +   WF   ++  V ++ +  
Sbjct: 32 WWPGRIVSWWMTGRSRAAEGTRWVMWFGDGKFSVVCVEKLMP 73


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.7 bits (61), Expect = 4.1
 Identities = 23/147 (15%), Positives = 42/147 (28%), Gaps = 54/147 (36%)

Query: 87  MRIHWCVPKMVLFWQLSELNTFFLKHIFEM--------PPSHPI-VIIR-LSFLGIMVAP 136
           +     VP    F+  S+L   F K + E          P+ P  ++ + L ++  +V P
Sbjct: 16  LEHVLLVPT-ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP 74

Query: 137 SA----------------RQY----------YSFVTDTQCKRLGTQCWI---YGAIQLTE 167
           S                   Y             + +     + T+  I     A  + +
Sbjct: 75  SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134

Query: 168 ---------ALL-CIKNGK----LLFG 180
                    AL   +  G      +FG
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFG 161


>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease,
           cathepsin, hydrolase, glycoprotein, thiol protease; HET:
           DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
          Length = 265

 Score = 26.5 bits (59), Expect = 7.5
 Identities = 5/21 (23%), Positives = 10/21 (47%)

Query: 157 CWIYGAIQLTEALLCIKNGKL 177
            WI+ +    E + C+K  + 
Sbjct: 34  SWIFASKYHLETIRCMKGYEP 54


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.330    0.141    0.498 

Gapped
Lambda     K      H
   0.267   0.0761    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,646,715
Number of extensions: 200566
Number of successful extensions: 454
Number of sequences better than 10.0: 1
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 8
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (24.9 bits)