RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15747
         (224 letters)



>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR
           {Escherichia coli [TaxId: 562]}
          Length = 109

 Score = 25.5 bits (56), Expect = 3.3
 Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 67  PVQPPQSWTHVRWLDPTCTYMRIH-WCVPKMVL 98
            V PP+ W ++  +    TY  I  +  P++++
Sbjct: 75  AVFPPEKWHNIEAMTDD-TYFNIDFFVAPEVLM 106


>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 137

 Score = 25.4 bits (55), Expect = 3.8
 Identities = 7/40 (17%), Positives = 18/40 (45%)

Query: 14 WWDALILDILLCNGIGIWVGLKLCKWFEMREYKWVSIKDI 53
          WW A+++     +      G++  +WF   ++  +S   +
Sbjct: 24 WWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKL 63


>g8pch.1 d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 228

 Score = 25.7 bits (55), Expect = 5.2
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 157 CWIYGAIQLTEALLCIKNGKLLFGRTQ 183
           CW +      E+ + I  GK+L    Q
Sbjct: 34  CWTFSTTGALESAVAIATGKMLSLAEQ 60


>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica
           papaya) [TaxId: 3649]}
          Length = 216

 Score = 25.4 bits (54), Expect = 6.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 157 CWIYGAIQLTEALLCIKNGKLLFGRTQ 183
           CW + A+   E +  I+ GKL+    Q
Sbjct: 25  CWAFSAVATVEGINKIRTGKLVELSEQ 51


>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum
           [TaxId: 5833]}
          Length = 241

 Score = 25.3 bits (54), Expect = 6.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 157 CWIYGAIQLTEALLCIKNGKLL 178
           CW + +I   E+   I+  KL+
Sbjct: 42  CWAFSSIGSVESQYAIRKNKLI 63


>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 254

 Score = 25.3 bits (54), Expect = 7.2
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 157 CWIYGAIQLTEALLCIKNGKL 177
           CW +GA++     +CI     
Sbjct: 30  CWAFGAVEAISDRICIHTNAH 50


>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 217

 Score = 24.9 bits (53), Expect = 7.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 157 CWIYGAIQLTEALLCIKNGKL 177
           CW + A+   EA L +K GKL
Sbjct: 25  CWAFSAVGALEAQLKLKTGKL 45


>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 100

 Score = 24.1 bits (52), Expect = 7.8
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 86  YMRIHWCVPKMVLFWQLSELNTFFLKHIFEMPPSH 120
            +  H  V ++   W +   + F  +  F   PS 
Sbjct: 65  GLEDHESVVEVQAAWPVGGDSRFVFRKNFASGPSS 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.141    0.498 

Gapped
Lambda     K      H
   0.267   0.0441    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 956,426
Number of extensions: 43294
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 22
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.1 bits)