BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15749
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KN9|A Chain A, Crystal Structure Of A Bacterial Signal Peptidase Apo-
Enzyme, Implications For Signal Peptide Binding And The
Ser-Lys Dyad Mechanism.
pdb|1KN9|B Chain B, Crystal Structure Of A Bacterial Signal Peptidase Apo-
Enzyme, Implications For Signal Peptide Binding And The
Ser-Lys Dyad Mechanism.
pdb|1KN9|C Chain C, Crystal Structure Of A Bacterial Signal Peptidase Apo-
Enzyme, Implications For Signal Peptide Binding And The
Ser-Lys Dyad Mechanism.
pdb|1KN9|D Chain D, Crystal Structure Of A Bacterial Signal Peptidase Apo-
Enzyme, Implications For Signal Peptide Binding And The
Ser-Lys Dyad Mechanism.
pdb|3IIQ|A Chain A, Crystallographic Analysis Of Bacterial Signal Peptidase
In Ternary Complex With Arylomycin A2 And A Beta-Sultam
Inhibitor
pdb|3IIQ|B Chain B, Crystallographic Analysis Of Bacterial Signal Peptidase
In Ternary Complex With Arylomycin A2 And A Beta-Sultam
Inhibitor
Length = 249
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 62 QRGDIVSLVSPKDPGQKIIKRIVGVEGDVVS 92
+RGDIV P+DP IKR VG+ GD V+
Sbjct: 52 KRGDIVVFKYPEDPKLDYIKRAVGLPGDKVT 82
>pdb|1T7D|A Chain A, Crystal Structure Of Escherichia Coli Type I Signal
Peptidase In Complex With A Lipopeptide Inhibitor
pdb|1T7D|B Chain B, Crystal Structure Of Escherichia Coli Type I Signal
Peptidase In Complex With A Lipopeptide Inhibitor
pdb|3S04|A Chain A, Crystal Structure Of Escherichia Coli Type I Signal
Peptidase In Complex With An Arylomycin
Lipoglycopeptide Antibiotic
pdb|3S04|B Chain B, Crystal Structure Of Escherichia Coli Type I Signal
Peptidase In Complex With An Arylomycin
Lipoglycopeptide Antibiotic
Length = 250
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 62 QRGDIVSLVSPKDPGQKIIKRIVGVEGDVVS 92
+RGDIV P+DP IKR VG+ GD V+
Sbjct: 53 KRGDIVVFKYPEDPKLDYIKRAVGLPGDKVT 83
>pdb|1B12|A Chain A, Crystal Structure Of Type 1 Signal Peptidase From
Escherichia Coli In Complex With A Beta-Lactam
Inhibitor
pdb|1B12|B Chain B, Crystal Structure Of Type 1 Signal Peptidase From
Escherichia Coli In Complex With A Beta-Lactam
Inhibitor
pdb|1B12|C Chain C, Crystal Structure Of Type 1 Signal Peptidase From
Escherichia Coli In Complex With A Beta-Lactam
Inhibitor
pdb|1B12|D Chain D, Crystal Structure Of Type 1 Signal Peptidase From
Escherichia Coli In Complex With A Beta-Lactam
Inhibitor
Length = 248
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 62 QRGDIVSLVSPKDPGQKIIKRIVGVEGDVVS 92
+RGDIV P+DP IKR VG+ GD V+
Sbjct: 51 KRGDIVVFKYPEDPKLDYIKRAVGLPGDKVT 81
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 15/72 (20%)
Query: 53 IIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVP-QGHIWVE 111
I+KG + +++G+ VS I+G G STL Y ++ P +G +++E
Sbjct: 19 ILKGISLSVKKGEFVS--------------IIGASGSGKSTLLYILGLLDAPTEGKVFLE 64
Query: 112 GDHVGHSMDSNM 123
G V ++ + +
Sbjct: 65 GKEVDYTNEKEL 76
>pdb|1C3Q|A Chain A, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|B Chain B, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|C Chain C, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
Length = 284
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 47 VFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQG 106
V + W+IKG D G GDI+ L + QK + ++ + G+V D S+V + G
Sbjct: 143 VGVTDWLIKGVDAGEGGGDIIRL--AQQAAQK-LNTVIAITGEVDVIAD-TSHVYTLHNG 198
Query: 107 H 107
H
Sbjct: 199 H 199
>pdb|1ESJ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESQ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate
Length = 284
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 47 VFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQG 106
V + W+IKG D G GDI+ L + QK + ++ + G+V D S+V + G
Sbjct: 143 VGVTDWLIKGVDAGEGGGDIIRL--AQQAAQK-LNTVIAITGEVDVIAD-TSHVYTLHNG 198
Query: 107 H 107
H
Sbjct: 199 H 199
>pdb|1EKK|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKK|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKQ|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
pdb|1EKQ|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
Length = 272
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 52 WIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGH 107
W+IKG D G GDI+ L + QK + ++ + G+V D S+V + GH
Sbjct: 136 WLIKGVDAGEGGGDIIRL--AQQAAQK-LNTVIAITGEVDVIAD-TSHVYTLHNGH 187
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 26.9 bits (58), Expect = 5.2, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 24 YVARVDGTSMQPVFNPDRNHQDYVFLNRW--IIKGDDIGLQRGDIVSLVSPKDPGQKIIK 81
+V+R D T + P+ D+ + W IIK GD++ LV + G K+I
Sbjct: 1311 FVSRPDRTMLAPM--------DFAIVVGWRAIIKAIFPNTVDGDLLKLVHLSN-GYKMIP 1361
Query: 82 RIVGVE-GDVVSTLDYKSNVVKVPQGHI 108
++ GDVVST +VV P G I
Sbjct: 1362 GAKPLQVGDVVSTTAVIESVVNQPTGKI 1389
>pdb|2BUK|A Chain A, Satellite Tobacco Necrosis Virus
pdb|1VTZ|EE Chain e, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|FF Chain f, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|GG Chain g, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|HH Chain h, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|II Chain i, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|JJ Chain j, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|KK Chain k, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|LL Chain l, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|MM Chain m, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|NN Chain n, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|OO Chain o, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|PP Chain p, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|QQ Chain q, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|RR Chain r, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|SS Chain s, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|TT Chain t, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|UU Chain u, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|VV Chain v, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|WW Chain w, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|XX Chain x, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|YY Chain y, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|ZZ Chain z, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|0 Chain 0, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|1 Chain 1, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|2 Chain 2, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|3 Chain 3, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|4 Chain 4, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|5 Chain 5, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|6 Chain 6, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|1VTZ|7 Chain 7, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 3rqv)
pdb|3RQV|A Chain A, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|B Chain B, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|C Chain C, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|D Chain D, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|E Chain E, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|F Chain F, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|G Chain G, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|H Chain H, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|I Chain I, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|J Chain J, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|K Chain K, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|L Chain L, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|M Chain M, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|N Chain N, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|O Chain O, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|P Chain P, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|Q Chain Q, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|R Chain R, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|S Chain S, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|T Chain T, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|U Chain U, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|V Chain V, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|W Chain W, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|X Chain X, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|Y Chain Y, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|Z Chain Z, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|AA Chain a, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|BB Chain b, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|CC Chain c, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3RQV|DD Chain d, 1.45 Angstrom Structure Of Stnv Coat Protein (Half Of
The Capsid, The Other Half In Pdb 1vtz)
pdb|3S4G|A Chain A, Low Resolution Structure Of Stnv Complexed With Rna
pdb|4BCU|A Chain A, Satellite Tobacco Necrosis Virus (stnv) Virus Like
Particle In Complex With The B3 Aptamer
Length = 196
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 49 LNRWIIKGDDIGLQRGDIVSLVSPK 73
L+ II+GDDI + GD V +VS K
Sbjct: 48 LSNGIIQGDDINQRSGDQVRIVSHK 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,177,598
Number of Sequences: 62578
Number of extensions: 214444
Number of successful extensions: 498
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 15
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)