BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15749
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5PQ63|IMP2L_XENLA Mitochondrial inner membrane protease subunit 2 OS=Xenopus laevis
GN=immp2l PE=2 SV=1
Length = 170
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/151 (58%), Positives = 113/151 (74%), Gaps = 3/151 (1%)
Query: 8 MLVGIPISITFCDSIGYVARVDGTSMQPVFNPD-RNHQDYVFLNRWIIKGDDIGLQRGDI 66
V +P+++TF D + +ARV+G SMQP NPD R D V LNRW + D+ QRGDI
Sbjct: 16 FFVAVPVTVTFLDRVACIARVEGVSMQPSLNPDARGESDIVLLNRWRARNYDV--QRGDI 73
Query: 67 VSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGP 126
VSLVSPK+P QKIIKR++ +EGD+V TL +K+ VKVP+GH+WVEGDH GHS DSN FGP
Sbjct: 74 VSLVSPKNPEQKIIKRVIALEGDIVKTLGHKNRYVKVPRGHVWVEGDHHGHSFDSNAFGP 133
Query: 127 VSMGLVTAKASSIIWPPSRWQYLKSEVPVHR 157
VS+GL+ + A+ I+WPP+RWQ LK +PV R
Sbjct: 134 VSLGLLHSHATHILWPPNRWQKLKPFLPVER 164
>sp|Q6AZD4|IMP2L_DANRE Mitochondrial inner membrane protease subunit 2 OS=Danio rerio
GN=immp2l PE=2 SV=1
Length = 183
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/158 (56%), Positives = 116/158 (73%), Gaps = 4/158 (2%)
Query: 2 FRIFKS-MLVGIPISITFCDSIGYVARVDGTSMQPVFNPD-RNHQDYVFLNRWIIKGDDI 59
F+ F S V +P+++T D + YVARV+G SMQP NPD + D V LNRW ++ +
Sbjct: 11 FKAFVSGFFVAVPVTVTVLDRLAYVARVEGASMQPSLNPDGESSPDVVLLNRWSVR--NY 68
Query: 60 GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSM 119
+QRGDIVS++SPK+P QKIIKR++G+EGD + TL YK+ V+VP GH+W+EGDH GHS
Sbjct: 69 HVQRGDIVSVLSPKNPQQKIIKRVIGIEGDFIKTLGYKNRYVRVPDGHLWIEGDHHGHSF 128
Query: 120 DSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHR 157
DSN FGPVS+GLV +AS IIWPPSRWQ ++ VP R
Sbjct: 129 DSNAFGPVSLGLVHGRASHIIWPPSRWQRIEPSVPPDR 166
>sp|Q2KI92|IMP2L_BOVIN Mitochondrial inner membrane protease subunit 2 OS=Bos taurus
GN=IMMP2L PE=2 SV=1
Length = 177
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/159 (55%), Positives = 116/159 (72%), Gaps = 4/159 (2%)
Query: 2 FRIF-KSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQ-DYVFLNRWIIKGDDI 59
F+ F K V +P+++TF D + VARV+G SMQP NP + D V LN W ++ ++
Sbjct: 12 FKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVLLNHWKVRNFEV 71
Query: 60 GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSM 119
QRGDIVSLVSPK+P QKIIKR++ +EGD+V T+ +K+ VKVP+GHIWVEGDH GHS
Sbjct: 72 --QRGDIVSLVSPKNPEQKIIKRVIALEGDIVKTMGHKNRYVKVPRGHIWVEGDHHGHSF 129
Query: 120 DSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRL 158
DSN FGPVS+GL+ A A+ I+WPP RWQ L+S +P RL
Sbjct: 130 DSNSFGPVSLGLLHAHATHILWPPKRWQKLESVLPPERL 168
>sp|Q8BPT6|IMP2L_MOUSE Mitochondrial inner membrane protease subunit 2 OS=Mus musculus
GN=Immp2l PE=2 SV=1
Length = 175
Score = 183 bits (465), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 117/159 (73%), Gaps = 4/159 (2%)
Query: 2 FRIF-KSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQ-DYVFLNRWIIKGDDI 59
F+ F K V +P+++TF D + VARV+G+SMQP NP + D V LN W ++ ++
Sbjct: 12 FKAFCKGFFVAVPVAVTFLDRVACVARVEGSSMQPSLNPGGSQSSDVVLLNHWKVRNFEV 71
Query: 60 GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSM 119
QRGDIVSLVSPK+P QKIIKR++ +EGD+V T+ +K+ +VKVP+GH+WVEGDH GHS
Sbjct: 72 --QRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRLVKVPRGHMWVEGDHHGHSF 129
Query: 120 DSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRL 158
DSN FGPVS+GL+ A A+ I+WPP RWQ L+S +P R
Sbjct: 130 DSNSFGPVSLGLLHAHATHILWPPERWQRLESVLPPERC 168
>sp|Q96T52|IMP2L_HUMAN Mitochondrial inner membrane protease subunit 2 OS=Homo sapiens
GN=IMMP2L PE=2 SV=1
Length = 175
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/154 (55%), Positives = 112/154 (72%), Gaps = 3/154 (1%)
Query: 6 KSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQ-DYVFLNRWIIKGDDIGLQRG 64
K V +P+++TF D + VARV+G SMQP NP + D V LN W ++ ++ RG
Sbjct: 17 KGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVLLNHWKVRNFEV--HRG 74
Query: 65 DIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMF 124
DIVSLVSPK+P QKIIKR++ +EGD+V T+ +K+ VKVP+GHIWVEGDH GHS DSN F
Sbjct: 75 DIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWVEGDHHGHSFDSNSF 134
Query: 125 GPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRL 158
GPVS+GL+ A A+ I+WPP RWQ L+S +P RL
Sbjct: 135 GPVSLGLLHAHATHILWPPERWQKLESVLPPERL 168
>sp|P46972|IMP2_YEAST Mitochondrial inner membrane protease subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IMP2 PE=1
SV=1
Length = 177
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 91/150 (60%), Gaps = 7/150 (4%)
Query: 3 RIFKSMLVGI---PISITFCDSIGYVARVDGTSMQPVFNPDRN--HQDYVFLNRWIIKGD 57
R ++ L+ I P+ +T +++ ++A+V GTSMQP NP D+V L ++ +K
Sbjct: 9 RFLRNTLIAISWVPVLLTINNNVVHIAQVKGTSMQPTLNPQTETLATDWVLLWKFGVKNP 68
Query: 58 DIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVST-LDYKSNVVKVPQGHIWVEGDHVG 116
L R DI+ +P +P + KR+ G+ D + T Y V +P+GHIWVEGD+
Sbjct: 69 S-NLSRDDIILFKAPTNPRKVYCKRVKGLPFDTIDTKFPYPKPQVNLPRGHIWVEGDNYF 127
Query: 117 HSMDSNMFGPVSMGLVTAKASSIIWPPSRW 146
HS+DSN FGP+S GLV KA +I+WPPSRW
Sbjct: 128 HSIDSNTFGPISSGLVIGKAITIVWPPSRW 157
>sp|Q9UST2|IMP2L_SCHPO Mitochondrial inner membrane protease subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC336.13c PE=3 SV=1
Length = 180
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 102/168 (60%), Gaps = 14/168 (8%)
Query: 4 IFKSMLVGI----PISITFCDSIGYVARVDGTSMQPVFNPDRN--HQDYVFLNRWIIKGD 57
+F LVGI P+ + + V ++G SM+P FNP+ N +D V L +W
Sbjct: 14 VFFKNLVGITLWVPVLMFVEQHVVSVGTIEGRSMKPAFNPETNMLQRDRVLLWKW----- 68
Query: 58 DIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKS-NVVKVPQGHIWVEGDHVG 116
+ +RGD+V L SP++P + ++KR++GVE D++ T K ++V VP+GH+WVEGD
Sbjct: 69 NKDYKRGDVVILRSPENPEELLVKRVLGVEYDIMKTRPPKKLSLVPVPEGHVWVEGDEQF 128
Query: 117 HSMDSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRLNAIITS 164
HS+DSN FGPVS GL+TAK +I++P SR + E R NA+ S
Sbjct: 129 HSIDSNKFGPVSTGLITAKVIAILFPFSRAGRIDHE--GFRKNAVFLS 174
>sp|Q96LU5|IMP1L_HUMAN Mitochondrial inner membrane protease subunit 1 OS=Homo sapiens
GN=IMMP1L PE=2 SV=1
Length = 166
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 83/159 (52%), Gaps = 14/159 (8%)
Query: 9 LVGIPI---SITFC--DSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQR 63
LVG I I C + +G V G SM+P + D VF + G+QR
Sbjct: 12 LVGYTIQYGCIAHCAFEYVGGVVMCSGPSMEPTIQ----NSDIVFAEN--LSRHFYGIQR 65
Query: 64 GDIVSLVSPKDPGQKIIKRIVGVEGDVVSTL---DYKSNVVKVPQGHIWVEGDHVGHSMD 120
GDIV SP DP I KR++G+EGD + T D+ + VP GH+W+EGD++ +S D
Sbjct: 66 GDIVIAKSPSDPKSNICKRVIGLEGDKILTTSPSDFFKSHSYVPMGHVWLEGDNLQNSTD 125
Query: 121 SNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRLN 159
S +GP+ GL+ + IWP S + +L++ HR +
Sbjct: 126 SRCYGPIPYGLIRGRIFFKIWPLSDFGFLRASPNGHRFS 164
>sp|Q9CQU8|IMP1L_MOUSE Mitochondrial inner membrane protease subunit 1 OS=Mus musculus
GN=Immp1l PE=2 SV=1
Length = 166
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 11/144 (7%)
Query: 20 DSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKI 79
+ +G V G SM+P + D VF + G+QRGDIV SP DP I
Sbjct: 28 EYVGGVVMCSGPSMEPTIQ----NSDIVFAEN--LSRHFYGIQRGDIVIAKSPSDPKSNI 81
Query: 80 IKRIVGVEGDVVSTLDYKSNVVK----VPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAK 135
KR++G+EGD + + S+V K VP GH+W+EGD++ +S DS +GP+ GL+ +
Sbjct: 82 CKRVIGLEGDKILSTS-PSDVFKSRSYVPTGHVWLEGDNLQNSTDSRYYGPIPYGLIRGR 140
Query: 136 ASSIIWPPSRWQYLKSEVPVHRLN 159
IWP S + +L+ R +
Sbjct: 141 IFFKIWPFSDFGFLRDSPNGQRFS 164
>sp|O74800|IMP1_SCHPO Mitochondrial inner membrane protease subunit 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=imp1 PE=3 SV=1
Length = 157
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Query: 25 VARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDI-GLQRGDIVSLVSPKDPGQKIIKRI 83
V G SM P N + ++V L++ + G GD+V P D Q + KRI
Sbjct: 28 VQMTSGPSMMPTLN---SGGEFVLLDK--LHGRFARSCSVGDVVVSAKPSDSKQHVCKRI 82
Query: 84 VGVEGDVVSTLDYKSNV-VKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWP 142
+G+ GD + SN + +P GH+W+ GD++ HS+DS +GPV MGL+ AK + +WP
Sbjct: 83 IGMPGDTIYVDPTSSNKKITIPLGHVWLAGDNIAHSLDSRNYGPVPMGLIKAKVIARVWP 142
Query: 143 PSRW 146
W
Sbjct: 143 HPHW 146
>sp|Q28I39|IMP1L_XENTR Mitochondrial inner membrane protease subunit 1 OS=Xenopus
tropicalis GN=immp1l PE=2 SV=1
Length = 167
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 12/144 (8%)
Query: 20 DSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKI 79
+ IG V G SM+P RN+ + N + + +GDI+ SP P I
Sbjct: 28 EYIGEVVICSGPSMEPTI---RNYDVLLCDN---LSRHFFSIHKGDIIVAKSPDKPSVNI 81
Query: 80 IKRIVGVEGDVVSTLDYKSNVVK----VPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAK 135
KR++G+EGD V + S ++K VP+GH+W+EGD++ +S DS +GPV L+ +
Sbjct: 82 CKRVIGLEGDKV-CMSSPSALLKRHTYVPKGHVWLEGDNLDNSTDSRSYGPVPYALIRGR 140
Query: 136 ASSIIWPPSRWQYLKSEVPVHRLN 159
+WP + LK E P R+
Sbjct: 141 ICLRVWPLESFGPLK-ESPNGRIQ 163
>sp|P28627|IMP1_YEAST Mitochondrial inner membrane protease subunit 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IMP1 PE=1
SV=3
Length = 190
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 20/121 (16%)
Query: 30 GTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGD 89
G SM P + DYV + + G G++ GD + + P DP +I KR+ G+ GD
Sbjct: 38 GESMLPTLSAT---NDYVHVLKNFQNGR--GIKMGDCIVALKPTDPNHRICKRVTGMPGD 92
Query: 90 VV-----STLDYKSNV----------VKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTA 134
+V + ++Y +V +KVP+GH+WV GD++ HS+DS + + MGL+
Sbjct: 93 LVLVDPSTIVNYVGDVLVDEERFGTYIKVPEGHVWVTGDNLSHSLDSRTYNALPMGLIMG 152
Query: 135 K 135
K
Sbjct: 153 K 153
>sp|Q8H0W1|PLSP1_ARATH Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1
PE=2 SV=2
Length = 291
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 23/162 (14%)
Query: 6 KSMLVGIPISITFCDSIGYVARVDGTSMQPVFN-PDRNHQDYV-FLNRWIIKGDDIGLQR 63
+++ V I +S+ F I + SM P F+ DR + V + R D + +
Sbjct: 116 QTVFVAIAVSLAFRYFIAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCANDIVIFKS 175
Query: 64 GDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLD--------------------YKSNVVKV 103
++ V D IKRIV EGD+V + Y+ ++V
Sbjct: 176 PPVLQEVGYTD-ADVFIKRIVAKEGDLVEVHNGKLMVNGVARNEKFILEPPGYEMTPIRV 234
Query: 104 PQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSR 145
P+ ++V GD+ +S DS+++GP+ + + ++ WPP+R
Sbjct: 235 PENSVFVMGDNRNNSYDSHVWGPLPLKNIIGRSVFRYWPPNR 276
>sp|O04348|TPP1_ARATH Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis
thaliana GN=TPP1 PE=2 SV=2
Length = 340
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 24/164 (14%)
Query: 6 KSMLVGIPISITFCDSIGYVARVDGTSMQPVFNP-DRNHQDYVFLNRWIIKGDDIGLQRG 64
K+ + +SI F ++ + TSM P + DR + V + DI + +
Sbjct: 158 KAAFTAVTVSILFRSALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKA 217
Query: 65 DIVSLVSPK---DPGQKIIKRIVGVEGD--------------------VVSTLDYKSNVV 101
+ L P+ IKRIV EGD V+ + Y+ +
Sbjct: 218 PPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPM 277
Query: 102 KVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSR 145
VP+G+++V GD+ S DS+ +GP+ + + ++ WPPS+
Sbjct: 278 FVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSK 321
>sp|Q10789|LEP_MYCTU Signal peptidase I OS=Mycobacterium tuberculosis GN=lepB PE=1 SV=1
Length = 294
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 101 VKVPQGHIWVEGDHVGHSMDSNMFGP-----------VSMGLVTAKASSIIWPPSRWQYL 149
V VP G +WV GD+ HS DS P V + V KA I+WPPSRW +
Sbjct: 226 VTVPPGRVWVMGDNRTHSADSRAHCPLLCTDDPLPGTVPVANVIGKARLIVWPPSRWGVV 285
Query: 150 KSEVP 154
+S P
Sbjct: 286 RSVNP 290
>sp|Q9M9Z2|TPP2_ARATH Probable thylakoidal processing peptidase 2, chloroplastic
OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1
Length = 367
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 27/164 (16%)
Query: 6 KSMLVGIPISITFCDSIGYVARVDGTSMQPVFN-PDR---NHQDYVFLNRWIIKGDDIGL 61
K+ + +S+ F ++ + TSM P + DR Y F + DI +
Sbjct: 188 KAAFTAVTVSLLFRSALAEPKSIPSTSMLPTLDVGDRVIAEKVSYFFRKPEV---SDIVI 244
Query: 62 QRGDIVSLVSPKDPGQKIIKRIVGVEGD--------------------VVSTLDYKSNVV 101
+ + + IKRIV EGD V+ +DY+ +
Sbjct: 245 FKAPPILVEHGYSCADVFIKRIVASEGDWVEVCDGKLLVNDTVQAEDFVLEPIDYEMEPM 304
Query: 102 KVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSR 145
VP+G+++V GD+ S DS+ +GP+ + + ++ WPPS+
Sbjct: 305 FVPEGYVFVLGDNRNKSFDSHNWGPLPIKNIIGRSVFRYWPPSK 348
>sp|P72660|LEP1_SYNY3 Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=lepB1 PE=3 SV=1
Length = 196
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 27/117 (23%)
Query: 62 QRGDIVSLVSPK-------DPGQKIIKRIVGVEGDVVSTLD------------------- 95
Q GDI+ P+ D GQ IKR++ + G V +
Sbjct: 68 QVGDIIVFHPPELLQVQGYDLGQAFIKRVIALPGQTVEVNNGIVYRDGQPLQEEYILEPP 127
Query: 96 -YKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQYLKS 151
Y V+VP G ++V GD+ +S DS+++G + + A +P SRW L S
Sbjct: 128 QYNLPAVRVPDGQVFVMGDNRNNSNDSHVWGFLPQQNIIGHALFRFFPASRWGQLGS 184
>sp|O33021|LEP_MYCLE Probable signal peptidase I OS=Mycobacterium leprae (strain TN)
GN=lepB PE=3 SV=1
Length = 289
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 18/64 (28%)
Query: 101 VKVPQGHIWVEGDHVGHSMDSNMF------------------GPVSMGLVTAKASSIIWP 142
V VPQG +WV GD+ HS DS G V + V KA ++WP
Sbjct: 214 VTVPQGRLWVMGDNRIHSADSRYHCNSTDVVNGLSCTGDPNSGTVPVSNVIGKARVVVWP 273
Query: 143 PSRW 146
PSRW
Sbjct: 274 PSRW 277
>sp|Q6GIC3|LEP_STAAR Signal peptidase IB OS=Staphylococcus aureus (strain MRSA252)
GN=spsB PE=3 SV=1
Length = 191
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 44/129 (34%)
Query: 60 GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVST----------------LDY------- 96
GL++G++V + K+ +KR++GV GD V L+Y
Sbjct: 58 GLEKGNVVVFHANKN--DDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQG 115
Query: 97 -----------------KSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSI 139
KSNV+ P+G V GD+ S DS FG + + K S
Sbjct: 116 DYITGTFQVKDLPNANPKSNVI--PKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFR 173
Query: 140 IWPPSRWQY 148
WP S ++Y
Sbjct: 174 FWPFSEFKY 182
>sp|P26844|LEP_PSEFL Signal peptidase I OS=Pseudomonas fluorescens GN=lepB PE=3 SV=1
Length = 284
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 62 QRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSM 119
QRGD++ P DP IKR+VG+ GDVV Y S+ +++ G+ V +
Sbjct: 126 QRGDVMVFRYPSDPNVNYIKRVVGLPGDVVR---YTSD------KRLFINGESVAEKL 174
>sp|O07560|LEPV_BACSU Signal peptidase I V OS=Bacillus subtilis (strain 168) GN=sipV PE=2
SV=1
Length = 168
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 44/158 (27%)
Query: 5 FKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRG 64
F + +V + ++I +++ +V+G SM P F F +R+ + R
Sbjct: 7 FLAGVVSVVLAIQVKNAVFIDYKVEGVSMNPTFQEGNELLVNKFSHRFKT------IHRF 60
Query: 65 DIVSLVSPKDPGQKI-IKRIVGVEGDVVSTLDYK-------------------------- 97
DIV K P K+ IKR++G+ G+ + D +
Sbjct: 61 DIVLF---KGPDHKVLIKRVIGLPGETIKYKDDQLYVNGKQVAEPFLKHLKSVSAGSHVT 117
Query: 98 --------SNVVKVPQGHIWVEGDHVGHSMDSNMFGPV 127
+ KVP+G +V GD+ +S DS FGP+
Sbjct: 118 GDFSLKDVTGTSKVPKGKYFVVGDNRIYSFDSRHFGPI 155
>sp|P73157|LEP2_SYNY3 Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=lepB2 PE=3 SV=1
Length = 218
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 37/168 (22%)
Query: 6 KSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGL---Q 62
K+M+ + ++I + + +SM+P + +R II+ L +
Sbjct: 26 KTMVTAVILAIGIRTFVAEARYIPSSSMEPTLQIN---------DRLIIEKISYRLRDPE 76
Query: 63 RGDIV-----SLVSPKDPGQKIIKRIVGVEGDVV-----------STLD---------YK 97
RG+IV + K+ IKRI+G+ GD V LD Y+
Sbjct: 77 RGEIVVFNPTDALKAKNFHDAFIKRIIGLPGDEVRVSQGNVYVNGKMLDENYIAAPPAYE 136
Query: 98 SNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSR 145
VKVP V GD+ +S DS+ +G V + +A WP R
Sbjct: 137 YGPVKVPDDQYLVLGDNRNNSYDSHYWGFVPREKLLGRAFVRFWPVPR 184
>sp|P42668|LEP_BACLI Signal peptidase I OS=Bacillus licheniformis GN=lepB PE=3 SV=1
Length = 186
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 40/174 (22%)
Query: 1 MFRIFKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLN-RWIIKGDDI 59
+F K++++ + +++ + V+GTSM P + + +V+ R++ +
Sbjct: 13 LFEWVKAIIIAVVLALLIRAFLFEPYLVEGTSMDPTLHD--GERLFVYKTVRYVGE---- 66
Query: 60 GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLD-------------YKSNV------ 100
+RGDIV ++ + +KR++G+ GD V D Y S
Sbjct: 67 -FKRGDIV-IIDGDEKNVHYVKRLIGLPGDTVQMKDDTLYINGKKVSEPYLSENRKEAEA 124
Query: 101 -----------VKVPQGHIWVEGDHVGHSMDS-NMFGPVSMGLVTAKASSIIWP 142
VKVP+G +V GD+ SMDS N G + V + + +P
Sbjct: 125 VGVKLTGDFGPVKVPEGKYFVMGDNRQRSMDSRNGLGLIDKKRVAGTSQFVFFP 178
>sp|Q11B53|ZNUC_MESSB Zinc import ATP-binding protein ZnuC OS=Mesorhizobium sp. (strain
BNC1) GN=znuC PE=3 SV=1
Length = 283
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 50 NRWIIKGDDIGLQRGDIVSLVSPKDPGQK-IIKRIVGV 86
RW+++G D+ ++RG+IV+L+ P G+ +K +GV
Sbjct: 24 GRWLVRGVDLTVRRGEIVTLIGPNGSGKSTTVKMAIGV 61
>sp|P42959|LEPU_BACSU Signal peptidase I U OS=Bacillus subtilis (strain 168) GN=sipU PE=1
SV=1
Length = 187
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 31/113 (27%)
Query: 60 GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVST-----------------LDYKSNV-- 100
G RGDI+ ++ K G+ +KR++G+ GD + +YK V
Sbjct: 68 GFHRGDII-VIHDKKSGRSFVKRLIGLPGDSIKMKNDQLYINDKKVEEPYLKEYKQEVKE 126
Query: 101 ----------VKVPQGHIWVEGDHVGHSMDS-NMFGPVSMGLVTAKASSIIWP 142
V+VP G +V GD+ +S+DS N G S + S + +P
Sbjct: 127 SGVTLTGDFEVEVPSGKYFVMGDNRLNSLDSRNGMGMPSEDDIIGTESLVFYP 179
>sp|P41026|LEP1_BACAM Signal peptidase I OS=Bacillus amyloliquefaciens GN=sipA PE=3 SV=1
Length = 185
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 40/168 (23%)
Query: 6 KSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGD 65
K++++ + +++ + + VDG SM+P + DR +F+N + D +RG
Sbjct: 19 KAIIIAVVLAVLIRNFLFAPYVVDGESMEPTLH-DRER---IFVNMTVKYISD--FKRGQ 72
Query: 66 IVSLVSPKDPGQKIIKRIVGVEGDVVS------------------------------TLD 95
IV L + +KRI+G+ GD V TL
Sbjct: 73 IVVL---NGENEHYVKRIIGLPGDTVQMKNDQLYINGKKVSEPYLAANKKKAKQDGYTLT 129
Query: 96 YKSNVVKVPQGHIWVEGDHVGHSMDS-NMFGPVSMGLVTAKASSIIWP 142
VKVP +V GD+ +SMDS N G + + + + +P
Sbjct: 130 DDFGPVKVPDDKYFVMGDNRRNSMDSRNGLGLFTKKQIAGTSKFVFFP 177
>sp|Q4ZTG9|SSUB1_PSEU2 Aliphatic sulfonates import ATP-binding protein SsuB 1
OS=Pseudomonas syringae pv. syringae (strain B728a)
GN=ssuB1 PE=3 SV=1
Length = 237
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 47 VFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIV-GVEGD 89
F ++ G D+ LQ G+IVSL+ P G+ + RIV G+E D
Sbjct: 14 AFAGNTVLHGIDLSLQSGEIVSLLGPSGCGKSTLLRIVAGLEQD 57
>sp|P0A069|LEP_STAAW Signal peptidase IB OS=Staphylococcus aureus (strain MW2) GN=spsB
PE=3 SV=1
Length = 191
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 44/129 (34%)
Query: 60 GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVST----------------LDY------- 96
GL++G++V + K+ +KR++GV GD V L+Y
Sbjct: 58 GLEKGNVVVFHANKN--DDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQG 115
Query: 97 -----------------KSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSI 139
KSNV+ P+G V GD+ S DS FG + + K S
Sbjct: 116 DYITGTFQVKDLPNANPKSNVI--PKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFR 173
Query: 140 IWPPSRWQY 148
WP S +++
Sbjct: 174 FWPFSEFKH 182
>sp|P0A070|LEP_STAAU Signal peptidase IB OS=Staphylococcus aureus GN=spsB PE=3 SV=1
Length = 191
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 44/129 (34%)
Query: 60 GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVST----------------LDY------- 96
GL++G++V + K+ +KR++GV GD V L+Y
Sbjct: 58 GLEKGNVVVFHANKN--DDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQG 115
Query: 97 -----------------KSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSI 139
KSNV+ P+G V GD+ S DS FG + + K S
Sbjct: 116 DYITGTFQVKDLPNANPKSNVI--PKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFR 173
Query: 140 IWPPSRWQY 148
WP S +++
Sbjct: 174 FWPFSEFKH 182
>sp|Q6GAW1|LEP_STAAS Signal peptidase IB OS=Staphylococcus aureus (strain MSSA476)
GN=spsB PE=3 SV=1
Length = 191
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 44/129 (34%)
Query: 60 GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVST----------------LDY------- 96
GL++G++V + K+ +KR++GV GD V L+Y
Sbjct: 58 GLEKGNVVVFHANKN--DDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQG 115
Query: 97 -----------------KSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSI 139
KSNV+ P+G V GD+ S DS FG + + K S
Sbjct: 116 DYITGTFQVKDLPNANPKSNVI--PKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFR 173
Query: 140 IWPPSRWQY 148
WP S +++
Sbjct: 174 FWPFSEFKH 182
>sp|P0A068|LEP_STAAN Signal peptidase IB OS=Staphylococcus aureus (strain N315) GN=spsB
PE=1 SV=1
Length = 191
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 44/129 (34%)
Query: 60 GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVST----------------LDY------- 96
GL++G++V + K+ +KR++GV GD V L+Y
Sbjct: 58 GLEKGNVVVFHANKN--DDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQG 115
Query: 97 -----------------KSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSI 139
KSNV+ P+G V GD+ S DS FG + + K S
Sbjct: 116 DYITGTFQVKDLPNANPKSNVI--PKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFR 173
Query: 140 IWPPSRWQY 148
WP S +++
Sbjct: 174 FWPFSEFKH 182
>sp|P0A067|LEP_STAAM Signal peptidase IB OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=spsB PE=3 SV=1
Length = 191
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 44/129 (34%)
Query: 60 GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVST----------------LDY------- 96
GL++G++V + K+ +KR++GV GD V L+Y
Sbjct: 58 GLEKGNVVVFHANKN--DDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQG 115
Query: 97 -----------------KSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSI 139
KSNV+ P+G V GD+ S DS FG + + K S
Sbjct: 116 DYITGTFQVKDLPNANPKSNVI--PKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFR 173
Query: 140 IWPPSRWQY 148
WP S +++
Sbjct: 174 FWPFSEFKH 182
>sp|Q5HHB9|LEP_STAAC Signal peptidase IB OS=Staphylococcus aureus (strain COL) GN=spsB
PE=3 SV=2
Length = 191
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 44/129 (34%)
Query: 60 GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVST----------------LDY------- 96
GL++G++V + K+ +KR++GV GD V L+Y
Sbjct: 58 GLEKGNVVVFHANKN--DDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQG 115
Query: 97 -----------------KSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSI 139
KSNV+ P+G V GD+ S DS FG + + K S
Sbjct: 116 DYITGTFQVKDLPNANPKSNVI--PKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFR 173
Query: 140 IWPPSRWQY 148
WP S +++
Sbjct: 174 FWPFSEFKH 182
>sp|Q9I5G7|LEP_PSEAE Signal peptidase I OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=lepB PE=3 SV=1
Length = 284
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 62 QRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDS 121
QRGD++ P +P IKR+VG+ GD V K ++V G+ V +
Sbjct: 126 QRGDVMVFRYPSEPNINYIKRVVGLPGDTVRYTKEK---------RLYVNGELVAEKLVG 176
Query: 122 NMFGPVSMGLVT 133
P ++G VT
Sbjct: 177 E--EPGTLGSVT 186
>sp|P41027|LEP_BACCL Signal peptidase I OS=Bacillus caldolyticus GN=lepB PE=3 SV=1
Length = 182
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 93 TLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQY 148
TL+ + +VP G I+V GD+ S DS FG V + + K WP ++ +
Sbjct: 125 TLEEVTGKTRVPPGCIFVLGDNRLSSWDSRHFGFVKINQIVGKVDFRYWPFKQFAF 180
>sp|A8GM78|LEP_RICAH Signal peptidase I OS=Rickettsia akari (strain Hartford) GN=lepB
PE=3 SV=1
Length = 266
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 62 QRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLD 95
+RGDIV P D + IKR++G+ GD + +D
Sbjct: 89 ERGDIVVFRPPNDMNVRYIKRLIGLPGDKIQLID 122
>sp|Q4UKA7|LEP_RICFE Signal peptidase I OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=lepB PE=3 SV=1
Length = 266
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 62 QRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLD 95
+RGDIV P D + IKR++G+ GD + +D
Sbjct: 89 ERGDIVVFRPPNDMNVRYIKRLIGLPGDKIQLID 122
>sp|Q9ZE32|LEP_RICPR Signal peptidase I OS=Rickettsia prowazekii (strain Madrid E)
GN=lepB PE=3 SV=1
Length = 264
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 62 QRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLD 95
+RGDIV P D + IKR++G+ GD + +D
Sbjct: 87 ERGDIVVFRPPNDMSVRYIKRLIGLPGDKIQLID 120
>sp|Q8L2J7|LEP_RICTY Signal peptidase I OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=lepB PE=1 SV=1
Length = 264
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 62 QRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLD 95
+RGDIV P D + IKR++G+ GD + +D
Sbjct: 87 ERGDIVVFRPPNDMSVRYIKRLIGLPGDKIQLID 120
>sp|A8EXI2|LEP_RICCK Signal peptidase I OS=Rickettsia canadensis (strain McKiel) GN=lepB
PE=3 SV=1
Length = 265
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 62 QRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLD 95
+RGDIV P D + IKR++G+ GD + +D
Sbjct: 88 ERGDIVVFRPPNDMSVRYIKRLIGLPGDKIQLID 121
>sp|P00803|LEP_ECOLI Signal peptidase I OS=Escherichia coli (strain K12) GN=lepB PE=1
SV=2
Length = 324
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 62 QRGDIVSLVSPKDPGQKIIKRIVGVEGDVVS 92
+RGDIV P+DP IKR VG+ GD V+
Sbjct: 127 KRGDIVVFKYPEDPKLDYIKRAVGLPGDKVT 157
>sp|Q48IB9|SSUB1_PSE14 Aliphatic sulfonates import ATP-binding protein SsuB 1
OS=Pseudomonas syringae pv. phaseolicola (strain 1448A
/ Race 6) GN=ssuB1 PE=3 SV=1
Length = 237
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 47 VFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIV-GVEGDVVSTLD 95
F +++ D+ LQ G+IVSL+ P G+ + RIV G+E D ++D
Sbjct: 14 AFAGNTVLQDIDLSLQSGEIVSLLGPSGCGKSTLLRIVAGLEQDFRGSVD 63
>sp|Q92P76|ZNUC_RHIME Zinc import ATP-binding protein ZnuC OS=Rhizobium meliloti
(strain 1021) GN=znuC PE=3 SV=2
Length = 302
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 51 RWIIKGDDIGLQRGDIVSLVSPKDPGQKII-KRIVGV 86
RW+++G D + RG+IV+L+ P G+ K +GV
Sbjct: 25 RWLVRGVDFSISRGEIVTLIGPNGSGKSTTAKTAIGV 61
>sp|Q51876|LEP_PHOLA Signal peptidase I OS=Phormidium laminosum GN=lepB PE=3 SV=1
Length = 203
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 27/111 (24%)
Query: 62 QRGDIV-----SLVSPKDP--GQKIIKRIVGVEGDVV--------------------STL 94
+RGDI+ + ++P + IKR++G+ G+ V S
Sbjct: 83 RRGDIIVFHPTEALKQQNPSLNEAFIKRVIGLPGETVQVTGGRVLINGQPLEENYIQSPP 142
Query: 95 DYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSR 145
DY+ KVP V GD+ +S DS+ +G V + +A WP +R
Sbjct: 143 DYQWGPEKVPADSFLVLGDNRNNSYDSHFWGYVPRQNIIGRAVVRFWPVNR 193
>sp|A8F0M1|LEP_RICM5 Signal peptidase I OS=Rickettsia massiliae (strain Mtu5) GN=lepB
PE=3 SV=2
Length = 266
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 62 QRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLD 95
+RGDIV P D + IKR++G+ GD + +D
Sbjct: 89 ERGDIVVFRPPHDMSVRYIKRLIGLPGDKIQLID 122
>sp|P37943|LEPP_BACNA Signal peptidase I P OS=Bacillus subtilis subsp. natto GN=sipP PE=1
SV=1
Length = 186
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 38/154 (24%)
Query: 28 VDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVE 87
V+G SM P + +F+N+ + + +RGDI+ +++ K+ +KR++G+
Sbjct: 40 VEGKSMDPTLV----DSERLFVNKTVKYTGN--FKRGDII-ILNGKEKSTHYVKRLIGLP 92
Query: 88 GDVVST----------------LDY-KSNV-------------VKVPQGHIWVEGDHVGH 117
GD V L Y K N +KVP+ +V GD+
Sbjct: 93 GDTVEMKNDHLFINGNEVKEPYLSYNKENAKKVGINLTGDFGPIKVPKDKYFVMGDNRQE 152
Query: 118 SMDS-NMFGPVSMGLVTAKASSIIWPPSRWQYLK 150
SMDS N G + + + +P S + K
Sbjct: 153 SMDSRNGLGLFTKDDIQGTEEFVFFPFSNMRKAK 186
>sp|Q2K9R2|LOLD_RHIEC Lipoprotein-releasing system ATP-binding protein LolD
OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=lolD
PE=3 SV=1
Length = 227
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 53 IIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGV 86
I+KG D L +G+IV+LV+P G+ + + G+
Sbjct: 25 ILKGADFSLAKGEIVALVAPSGTGKSTLLHVAGL 58
>sp|P0A1W2|LEP_SALTY Signal peptidase I OS=Salmonella typhimurium (strain LT2 / SGSC1412
/ ATCC 700720) GN=lepB PE=3 SV=1
Length = 324
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 62 QRGDIVSLVSPKDPGQKIIKRIVGVEGDVVS 92
+RGDIV P+DP IKR VG+ GD ++
Sbjct: 127 KRGDIVVFKYPEDPKLDYIKRAVGLPGDKIT 157
>sp|P0A1W3|LEP_SALTI Signal peptidase I OS=Salmonella typhi GN=lepB PE=3 SV=1
Length = 324
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 62 QRGDIVSLVSPKDPGQKIIKRIVGVEGDVVS 92
+RGDIV P+DP IKR VG+ GD ++
Sbjct: 127 KRGDIVVFKYPEDPKLDYIKRAVGLPGDKIT 157
>sp|Q92QN0|LOLD_RHIME Lipoprotein-releasing system ATP-binding protein LolD
OS=Rhizobium meliloti (strain 1021) GN=lolD PE=3 SV=1
Length = 228
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 53 IIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGV-----EGDVV 91
I+KG D+ L+ G+ V+LV+P G+ + I G+ EG+V+
Sbjct: 25 ILKGADLTLRSGETVALVAPSGTGKSTLLHIAGLLEHPDEGEVL 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,283,342
Number of Sequences: 539616
Number of extensions: 2671909
Number of successful extensions: 6408
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 6289
Number of HSP's gapped (non-prelim): 111
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)