Query psy15749
Match_columns 164
No_of_seqs 211 out of 1149
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 20:23:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 2.3E-37 7.9E-42 247.5 11.6 126 18-147 1-232 (248)
2 1kca_A Repressor protein CI; g 99.4 2.7E-12 9.3E-17 90.1 10.5 90 24-147 14-109 (109)
3 1umu_A UMUD'; induced mutagene 99.2 1.3E-10 4.5E-15 82.0 8.4 88 23-144 27-115 (116)
4 1jhf_A LEXA repressor; LEXA SO 98.9 7.3E-09 2.5E-13 79.2 10.0 87 24-143 111-199 (202)
5 2hnf_A Repressor protein CI101 98.9 6.6E-09 2.3E-13 74.9 9.2 82 24-139 45-132 (133)
6 3bdn_A Lambda repressor; repre 98.9 6.1E-09 2.1E-13 81.0 8.1 90 24-147 141-236 (236)
7 3k2z_A LEXA repressor; winged 98.6 5.4E-07 1.8E-11 68.7 10.5 85 23-141 109-194 (196)
8 2fjr_A Repressor protein CI; g 96.9 0.0041 1.4E-07 46.1 8.1 75 31-142 113-187 (189)
9 3nx6_A 10KDA chaperonin; bacte 85.5 1.9 6.4E-05 28.9 5.3 69 43-113 6-87 (95)
10 1pcq_O Groes protein; chaperon 85.0 2.3 8E-05 28.5 5.6 69 43-113 6-88 (97)
11 1p3h_A 10 kDa chaperonin; beta 82.3 3.1 0.00011 28.0 5.4 68 43-113 8-90 (99)
12 1we3_O CPN10(groes); chaperoni 80.2 2 7E-05 29.0 3.9 69 44-114 12-93 (100)
13 1w4s_A Polybromo, polybromo 1 66.9 5.3 0.00018 29.2 3.6 90 34-140 6-108 (174)
14 3r8s_K 50S ribosomal protein L 54.7 50 0.0017 22.9 8.1 32 100-131 76-107 (122)
15 3v2d_O 50S ribosomal protein L 52.5 55 0.0019 22.7 9.2 29 101-130 77-105 (122)
16 3bbo_M Ribosomal protein L14; 40.2 89 0.0031 21.5 9.6 30 101-131 77-106 (121)
17 3u5e_V L17A, YL32, 60S ribosom 37.7 1.1E+02 0.0036 21.7 6.5 31 100-131 92-122 (137)
18 3i4o_A Translation initiation 31.4 37 0.0013 21.7 2.7 11 60-70 53-63 (79)
19 2pp6_A Gifsy-2 prophage ATP-bi 29.6 27 0.00092 23.5 1.9 27 58-88 61-87 (102)
20 1jt8_A EIF-1A, probable transl 29.3 43 0.0015 22.4 2.9 10 61-70 59-68 (102)
21 1whi_A Ribosomal protein L14; 26.7 45 0.0016 23.1 2.7 29 101-130 77-105 (122)
22 2equ_A PHD finger protein 20-l 23.8 1.4E+02 0.0047 18.5 6.0 47 58-108 7-56 (74)
23 3iuw_A Activating signal coint 22.8 62 0.0021 20.8 2.6 14 58-71 35-48 (83)
24 2dgy_A MGC11102 protein; EIF-1 22.4 67 0.0023 21.7 2.9 12 60-71 53-64 (111)
25 1vq8_K 50S ribosomal protein L 20.9 63 0.0021 22.7 2.5 31 100-131 87-117 (132)
26 2kyw_A Adhesion exoprotein; st 20.3 1.7E+02 0.006 18.5 5.6 36 82-123 24-59 (87)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=100.00 E-value=2.3e-37 Score=247.54 Aligned_cols=126 Identities=26% Similarity=0.353 Sum_probs=108.3
Q ss_pred HhhceeEEEEEeCCCCCcccCCCCCCceEEEEEeeeccC----------CCCCcceeeEEEEecCCCCCcceEEEEEeeC
Q psy15749 18 FCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKG----------DDIGLQRGDIVSLVSPKDPGQKIIKRIVGVE 87 (164)
Q Consensus 18 i~~~~~~~~~V~g~SM~Ptl~~g~~~~d~vlv~r~~~~~----------~~~~~~rGDiVvf~~p~~~~~~~iKRVialp 87 (164)
++.|+++++.|+|+||+|||+.| |+++++|..|.. ...++++||||+|+.|.+++..+||||+|+|
T Consensus 1 ir~fv~~~~~v~g~SM~Ptl~~G----D~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglp 76 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLLIG----DFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLP 76 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSCTT----EEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECT
T ss_pred CeEEEEEEEEeccccccccccCC----CEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeC
Confidence 46789999999999999999999 999999987531 0257999999999999777889999999999
Q ss_pred CCEEEeccC-------------------c----------c----------------------------------------
Q psy15749 88 GDVVSTLDY-------------------K----------S---------------------------------------- 98 (164)
Q Consensus 88 GD~v~~~~~-------------------~----------~---------------------------------------- 98 (164)
||+|++++. + .
T Consensus 77 GD~v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~e~l~ 156 (248)
T 1b12_A 77 GDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLG 156 (248)
T ss_dssp TCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEEET
T ss_pred CCEEEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhhHHhhhc
Confidence 999988653 0 0
Q ss_pred ---------------------------ceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEeCCCccc
Q psy15749 99 ---------------------------NVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQ 147 (164)
Q Consensus 99 ---------------------------~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~~~~~ 147 (164)
.+++||+|+||||||||++|.|||+||+||+++|+|||.+++||+++.+
T Consensus 157 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~~~~ 232 (248)
T 1b12_A 157 DVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQE 232 (248)
T ss_dssp TEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC---
T ss_pred CccceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCCccc
Confidence 0348999999999999999999999999999999999999999998763
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.40 E-value=2.7e-12 Score=90.08 Aligned_cols=90 Identities=16% Similarity=0.281 Sum_probs=70.0
Q ss_pred EEEEEeCCCCC------cccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCc
Q psy15749 24 YVARVDGTSMQ------PVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYK 97 (164)
Q Consensus 24 ~~~~V~g~SM~------Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~ 97 (164)
....|.|+||+ |++.+| |++++++ ..+++.||+|++..+. ++.++||++..
T Consensus 14 f~~~V~GdSM~~~~g~~p~i~~G----d~v~Vd~------~~~~~~Gdivv~~~~~--~~~~vKrl~~~----------- 70 (109)
T 1kca_A 14 FWLEVEGNSMTAPTGSKPSFPDG----MLILVDP------EQAVEPGDFCIARLGG--DEFTFKKLIRD----------- 70 (109)
T ss_dssp EEEECCSSTTCCCTTCSSCCCTT----CEEEEET------TSCCCTTCEEEEECST--TCEEEEEEEEE-----------
T ss_pred EEEEEeCcCcCCCCCCCCeeCCC----CEEEEec------CCcCCCCCEEEEEECC--CeEEEEEEEEe-----------
Confidence 46789999999 999999 9999998 4568999999998753 47899999752
Q ss_pred cceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEeCCCccc
Q psy15749 98 SNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQ 147 (164)
Q Consensus 98 ~~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~~~~~ 147 (164)
.|++++.+||+... ....- ..-.|+|+|.+.+||+..||
T Consensus 71 -------~~~~~L~s~N~~y~--~~~~~--~~~~IiG~Vv~~~~~~~~~~ 109 (109)
T 1kca_A 71 -------SGQVFLQPLNPQYP--MIPCN--ESCSVVGKVIASQWPEETFG 109 (109)
T ss_dssp -------TTEEEEECSSTTSC--CEECC--TTCEEEEEEEEEECCGGGGC
T ss_pred -------CCEEEEEECCCCCC--CEEcC--CCcEEEEEEEEEEeCHHHcC
Confidence 35678889986321 11111 35679999999999987775
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=99.16 E-value=1.3e-10 Score=81.96 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=62.9
Q ss_pred eEEEEEeCCCCCc-ccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCcccee
Q psy15749 23 GYVARVDGTSMQP-VFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVV 101 (164)
Q Consensus 23 ~~~~~V~g~SM~P-tl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~ 101 (164)
.....|.|+||+| ++.+| |.+++++ ...++.||+|++..+ +..++||+...
T Consensus 27 ~~~~~v~GdSM~p~~i~~G----d~v~vd~------~~~~~~gdivv~~~~---~~~~vKr~~~~--------------- 78 (116)
T 1umu_A 27 TYFVKASGDSMIDGGISDG----DLLIVDS------AITASHGDIVIAAVD---GEFTVKKLQLR--------------- 78 (116)
T ss_dssp EEEEECCSSTTGGGTCCTT----CEEEEET------TSCCCTTCEEEEEET---TEEEEEEEECS---------------
T ss_pred EEEEEECCCCcCCCCCCCC----CEEEEEc------CCCCCCCCEEEEEEC---CEEEEEEEEeC---------------
Confidence 4578899999999 89999 9999998 456899999999874 47899999752
Q ss_pred eecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEeCCC
Q psy15749 102 KVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPS 144 (164)
Q Consensus 102 ~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~~ 144 (164)
+ .+++.+||+.. ....+..-..-.|+|+|.+.+..+.
T Consensus 79 --~--~~~L~s~N~~y--~~~~i~~~~~~~IiG~Vv~~~r~~r 115 (116)
T 1umu_A 79 --P--TVQLIPMNSAY--SPITISSEDTLDVFGVVIHVVKAAT 115 (116)
T ss_dssp --S--SCEEECSSTTS--CCEECCTTSCEEEEEEEEEEEC---
T ss_pred --C--cEEEECCCCCC--CCEEcCCCCeEEEEEEEEEEEEecC
Confidence 2 56778888631 1111111122369999999877653
No 4
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.92 E-value=7.3e-09 Score=79.18 Aligned_cols=87 Identities=15% Similarity=0.238 Sum_probs=61.7
Q ss_pred EEEEEeCCCCCcc-cCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCccceee
Q psy15749 24 YVARVDGTSMQPV-FNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVK 102 (164)
Q Consensus 24 ~~~~V~g~SM~Pt-l~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~~ 102 (164)
....|.|+||+|+ +.+| |.+++++ ...++.||+|++... ++..+||+. .+|
T Consensus 111 ~~~~v~GdSM~p~~i~~G----d~v~vd~------~~~~~~G~i~v~~~~---~~~~vKrl~-~~~-------------- 162 (202)
T 1jhf_A 111 FLLRVSGMSMKDIGIMDG----DLLAVHK------TQDVRNGQVVVARID---DEVTVKRLK-KQG-------------- 162 (202)
T ss_dssp EEEECCSSTTGGGTCCTT----CEEEEEE------CSCCCTTSEEEEEET---TEEEEEEEE-EET--------------
T ss_pred EEEEECCCCCCCCCCCCC----CEEEEec------cCCcCCCeEEEEEEC---CEEEEEEEE-EeC--------------
Confidence 4678999999999 9999 9999987 456899999999862 578999997 344
Q ss_pred ecCCeEEEecCCCCCCCCCCcccc-ccCCCeEEEEEEEEeCC
Q psy15749 103 VPQGHIWVEGDHVGHSMDSNMFGP-VSMGLVTAKASSIIWPP 143 (164)
Q Consensus 103 vp~~~~~vlgDn~~~s~DSR~~G~-V~~~~I~Gkv~~~~~p~ 143 (164)
|.+++.+||+. +....+.+ -..-.|+|+|++.+...
T Consensus 163 ---~~~~l~s~N~~--y~~~~~~~~~~~~~IiG~Vv~~~r~~ 199 (202)
T 1jhf_A 163 ---NKVELLPENSE--FKPIVVDLRQQSFTIEGLAVGVIRNG 199 (202)
T ss_dssp ---TEEEEECSSTT--CCCEEEETTTSCEEEEEEEEEEEEC-
T ss_pred ---CEEEEEECCCC--CCCEEccCCCCceEEEEEEEEEEEcc
Confidence 45666777752 11111110 01235999999887643
No 5
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=98.92 E-value=6.6e-09 Score=74.91 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=61.3
Q ss_pred EEEEEeCCCCC------cccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCc
Q psy15749 24 YVARVDGTSMQ------PVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYK 97 (164)
Q Consensus 24 ~~~~V~g~SM~------Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~ 97 (164)
....|.|+||+ |++.+| |++++++ ..+++.||+|++.... ++..+||+.-.
T Consensus 45 f~~~V~GdSM~~~~g~~p~i~~G----d~v~vd~------~~~~~~Gdivv~~~~~--~~~~vKrl~~~----------- 101 (133)
T 2hnf_A 45 FWLEVEGNSMTTPTGSKTSFPDG----MLILVDP------EQAVEPGDFCIARLGG--DEFTFAKLIRD----------- 101 (133)
T ss_dssp EEEECCSSTTCCC---CCCCCTT----CEEEEET------TSCCCTTSEEEEEETT--TEEEEEEEEEE-----------
T ss_pred EEEEEeCCCcCCCcCCCCccCCC----CEEEEcc------CCCCCCCCEEEEEECC--CEEEEEEEEEe-----------
Confidence 46789999999 999999 9999998 4578999999998742 57899999742
Q ss_pred cceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEE
Q psy15749 98 SNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSI 139 (164)
Q Consensus 98 ~~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~ 139 (164)
.|.+++.+||+.. .+ ...- ..-.|+|+|++.
T Consensus 102 -------~~~~~L~s~N~~y-~~-~~~~--~~~~IiG~Vv~~ 132 (133)
T 2hnf_A 102 -------SGQVFLQPLNPQY-PM-IPCN--ESCSVVGKVIAS 132 (133)
T ss_dssp -------TTEEEEECSSTTS-CC-EECS--TTEEEEEEEEEE
T ss_pred -------CCeEEEEECCCCC-CC-EEcC--CCCEEEEEEEEE
Confidence 3467788888632 11 1111 345799999864
No 6
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.87 E-value=6.1e-09 Score=81.02 Aligned_cols=90 Identities=16% Similarity=0.280 Sum_probs=67.1
Q ss_pred EEEEEeCCCCC------cccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCc
Q psy15749 24 YVARVDGTSMQ------PVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYK 97 (164)
Q Consensus 24 ~~~~V~g~SM~------Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~ 97 (164)
....|.|+||+ |++.+| |++++++ ...++.||+|++.. +.+...+||+...
T Consensus 141 ~~l~V~GdSM~~~~g~~P~i~~G----d~v~vd~------~~~~~~g~ivv~~~--~~~~~~vKrl~~~----------- 197 (236)
T 3bdn_A 141 FWLEVEGNSMTAPTGSKPSFPDG----MLILVDP------EQAVEPGDFCIARL--GGDEFTFKKLIRG----------- 197 (236)
T ss_dssp EEEECCSSSSCCCSSCSSCCCSS----CEEEECC------SSCCCTTSEEEEES--TTTCCCCEEEECC-----------
T ss_pred EEEEEeCCCcCCCCCCCCcCCCC----CEEEECC------CCCCCCCcEEEEEE--CCCeEEEEEEEEc-----------
Confidence 46789999999 999999 9999987 44789999999986 2357899999642
Q ss_pred cceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEeCCCccc
Q psy15749 98 SNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQ 147 (164)
Q Consensus 98 ~~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~~~~~ 147 (164)
+|.+++.+||+.. ....+- ..-.|+|+|+..+||.+.|+
T Consensus 198 -------~~~~~L~s~N~~y--~~~~~~--~~~~IiG~Vv~~~~~~~~~~ 236 (236)
T 3bdn_A 198 -------SGQVFLQPLNPQY--PMIPCN--ESCSVVGKVIASQWPEETFG 236 (236)
T ss_dssp -------SSSCEEECSSTTS--CCBC----CCCEEEEEEEECCCCSSSCC
T ss_pred -------CCcEEEEeCCCCC--CCeecC--CCcEEEEEEEEEEcCHHhcC
Confidence 3456677888531 111111 34569999999999987764
No 7
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.56 E-value=5.4e-07 Score=68.66 Aligned_cols=85 Identities=19% Similarity=0.257 Sum_probs=62.6
Q ss_pred eEEEEEeCCCC-CcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCcccee
Q psy15749 23 GYVARVDGTSM-QPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVV 101 (164)
Q Consensus 23 ~~~~~V~g~SM-~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~ 101 (164)
.....|.|+|| +|++.+| |++++++ ...++.||+|++... ++..+||+.-
T Consensus 109 ~f~l~v~GdSM~~p~i~~G----D~viv~~------~~~~~~G~ivv~~~~---~~~~vKr~~~---------------- 159 (196)
T 3k2z_A 109 HFLLKVKGESMIEEHICDG----DLVLVRR------QDWAQNGDIVAAMVD---GEVTLAKFYQ---------------- 159 (196)
T ss_dssp EEEEECCSSTTGGGTCCTT----CEEEEEE------CSCCCTTCEEEEEET---TEEEEEEEEE----------------
T ss_pred EEEEEEeCCCcCCCCCCCC----CEEEEec------cCcCCCCCEEEEEEC---CcEEEEEEEE----------------
Confidence 45678999999 6999999 9999998 456899999999863 4789999953
Q ss_pred eecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEe
Q psy15749 102 KVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIW 141 (164)
Q Consensus 102 ~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~ 141 (164)
..|.+++..||+.. .....- -..-.|+|+|+..+.
T Consensus 160 --~~~~~~L~~~N~~y--~~i~i~-~~~~~i~G~Vv~~~r 194 (196)
T 3k2z_A 160 --RGDTVELRPANREM--SSMFFR-AEKVKILGKVVGVFR 194 (196)
T ss_dssp --ETTEEEEECSCTTS--CCEEEE-GGGCEEEEEEEEEEE
T ss_pred --ECCEEEEEECCCCC--CCEEec-CCCEEEEEEEEEEEE
Confidence 23567788888632 111111 123479999988764
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=96.91 E-value=0.0041 Score=46.12 Aligned_cols=75 Identities=12% Similarity=0.144 Sum_probs=49.0
Q ss_pred CCCCcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCccceeeecCCeEEE
Q psy15749 31 TSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWV 110 (164)
Q Consensus 31 ~SM~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~~vp~~~~~v 110 (164)
++|...-.+| |.++|++ . .+..|+++++... +...+||+.-.+| |.+.+
T Consensus 113 ~~~~~v~~~G----d~v~Vd~------~-~~~~g~i~vv~~~---g~~~vKrl~~~~~-----------------~~i~L 161 (189)
T 2fjr_A 113 TDGMAIRSEG----KIYFVDK------Q-ASLSDGLWLVDIK---GAISIRELTKLPG-----------------RKLHV 161 (189)
T ss_dssp SSEEEEEETT----EEEEEET------T-CCSCSEEEEEEET---TEEEEEEEEEETT-----------------TEEEE
T ss_pred CCeEEEeeCC----cEEEEEc------C-CccCCCEEEEEeC---CeEEEEEEEECCC-----------------CEEEE
Confidence 3444444677 9999987 4 5677999999863 4789999965444 35556
Q ss_pred ecCCCCCCCCCCccccccCCCeEEEEEEEEeC
Q psy15749 111 EGDHVGHSMDSNMFGPVSMGLVTAKASSIIWP 142 (164)
Q Consensus 111 lgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p 142 (164)
.+||++ ...- ...=.|+|||++.+..
T Consensus 162 ~s~N~~-----~~i~-~~~i~IiG~Vv~~~r~ 187 (189)
T 2fjr_A 162 AGGKVP-----FECG-IDDIKTLGRVVGVYSE 187 (189)
T ss_dssp ESSSSC-----EEEE-TTSSEEEEEEEEEEEE
T ss_pred EeCCCC-----eEec-ccceEEEEEEEEEEEe
Confidence 677751 1110 1233599999987654
No 9
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=85.52 E-value=1.9 Score=28.92 Aligned_cols=69 Identities=20% Similarity=0.164 Sum_probs=40.3
Q ss_pred CceEEEEEeeeccC-----------CCCCcceeeEEEEecCC--CCCcceEEEEEeeCCCEEEeccCccceeeecCCeEE
Q psy15749 43 HQDYVFLNRWIIKG-----------DDIGLQRGDIVSLVSPK--DPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIW 109 (164)
Q Consensus 43 ~~d~vlv~r~~~~~-----------~~~~~~rGDiVvf~~p~--~~~~~~iKRVialpGD~v~~~~~~~~~~~vp~~~~~ 109 (164)
++|+|++.+..... ...+++.|.+|..-+.. +.++ . .-.--..||+|.+..|...++++...+|+
T Consensus 6 L~DRVlVk~~e~e~kT~gGI~LP~~a~eK~~~G~VvAVG~G~~~~~G~-~-~p~~VkvGD~Vl~~ky~Gtevk~dg~ey~ 83 (95)
T 3nx6_A 6 LHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGS-L-HAPVVKVGDKVIYGQYAGSSYKSEGVEYK 83 (95)
T ss_dssp CTTEEEEEEC-------------------CEEEEEEEECSCEECTTSC-E-ECCSCCTTCEEEECTTCSEEEEETTEEEE
T ss_pred cCCEEEEEEccccccccceEEeCccccCCccccEEEEECCCeECCCCC-E-EccccCCCCEEEECCcCCeEEEECCEEEE
Confidence 35999998754220 13457778877775321 1111 1 11122569999999888888888777788
Q ss_pred EecC
Q psy15749 110 VEGD 113 (164)
Q Consensus 110 vlgD 113 (164)
++-+
T Consensus 84 i~re 87 (95)
T 3nx6_A 84 VLRE 87 (95)
T ss_dssp EEEG
T ss_pred EEEH
Confidence 7754
No 10
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=85.01 E-value=2.3 Score=28.54 Aligned_cols=69 Identities=17% Similarity=0.308 Sum_probs=45.2
Q ss_pred CceEEEEEeeecc-----------CCCCCcceeeEEEEecCC--CCCcceEEEEEeeCCCEEEecc-CccceeeecCCeE
Q psy15749 43 HQDYVFLNRWIIK-----------GDDIGLQRGDIVSLVSPK--DPGQKIIKRIVGVEGDVVSTLD-YKSNVVKVPQGHI 108 (164)
Q Consensus 43 ~~d~vlv~r~~~~-----------~~~~~~~rGDiVvf~~p~--~~~~~~iKRVialpGD~v~~~~-~~~~~~~vp~~~~ 108 (164)
++|+|++.+.... ....+++.|.+|..-+.. +.++ .+. .--..||+|.+.. |...++++...+|
T Consensus 6 L~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~-~~p-~~VkvGD~Vlf~k~y~Gtevk~dgeey 83 (97)
T 1pcq_O 6 LHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGE-VKP-LDVKVGDIVIFNDGYGVKSEKIDNEEV 83 (97)
T ss_dssp CSSEEEEEECCTTCTTTTSSCCCCCCSCCCCEEEEEEECSEECTTSSS-CEE-CSCCTTCEEEECCCSSCEEEEETTEEE
T ss_pred cCCEEEEEEccccccccceEEeCcccccCCcccEEEEEcCceecCCCC-EEe-cccCCCCEEEECCccCCeEEEECCEEE
Confidence 3499999886422 024578899999885321 1122 111 1235799999998 8888888888788
Q ss_pred EEecC
Q psy15749 109 WVEGD 113 (164)
Q Consensus 109 ~vlgD 113 (164)
.++.+
T Consensus 84 ~i~re 88 (97)
T 1pcq_O 84 LIMSE 88 (97)
T ss_dssp EEEEG
T ss_pred EEEEh
Confidence 87754
No 11
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=82.32 E-value=3.1 Score=28.04 Aligned_cols=68 Identities=21% Similarity=0.249 Sum_probs=44.6
Q ss_pred CceEEEEEeeecc-----------CCCCCcceeeEEEEecCC--CCCcceEEEE--EeeCCCEEEeccCccceeeecCCe
Q psy15749 43 HQDYVFLNRWIIK-----------GDDIGLQRGDIVSLVSPK--DPGQKIIKRI--VGVEGDVVSTLDYKSNVVKVPQGH 107 (164)
Q Consensus 43 ~~d~vlv~r~~~~-----------~~~~~~~rGDiVvf~~p~--~~~~~~iKRV--ialpGD~v~~~~~~~~~~~vp~~~ 107 (164)
++|+|++.+.... ....+++.|.+|..-+.. +.+. +++ --..||+|.+..|...++++....
T Consensus 8 L~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~---~~~p~~VkvGD~Vlf~ky~Gtevk~dgee 84 (99)
T 1p3h_A 8 LEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGE---KRIPLDVAEGDTVIYSKYGGTEIKYNGEE 84 (99)
T ss_dssp CTTEEEEEECCCCCBCTTSCBCCCSSCCSEEEEEEEEECCCEECSSSS---CEECCSCCTTCEEEEECTTCEEEEETTEE
T ss_pred eCCEEEEEEccccccccceEEeCcccccCCceEEEEEECCCcCcCCCC---EEEccccCCCCEEEECCcCCeEEEECCEE
Confidence 3499999886422 024578889988885321 1110 222 234799999999888888888777
Q ss_pred EEEecC
Q psy15749 108 IWVEGD 113 (164)
Q Consensus 108 ~~vlgD 113 (164)
|+++.+
T Consensus 85 y~i~re 90 (99)
T 1p3h_A 85 YLILSA 90 (99)
T ss_dssp EEEEEG
T ss_pred EEEEEh
Confidence 877754
No 12
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=80.25 E-value=2 Score=29.00 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=43.2
Q ss_pred ceEEEEEeeeccC-----------CCCCcceeeEEEEecCC--CCCcceEEEEEeeCCCEEEeccCccceeeecCCeEEE
Q psy15749 44 QDYVFLNRWIIKG-----------DDIGLQRGDIVSLVSPK--DPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWV 110 (164)
Q Consensus 44 ~d~vlv~r~~~~~-----------~~~~~~rGDiVvf~~p~--~~~~~~iKRVialpGD~v~~~~~~~~~~~vp~~~~~v 110 (164)
+|+|++.+..... ...+++.|.+|..-+.. +.++ .+ -.--..||+|.+..|...++++...+|.+
T Consensus 12 ~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~-~~-p~~VkvGD~Vlf~ky~Gtevk~dgeeyli 89 (100)
T 1we3_O 12 GDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQ-RV-PLEVKEGDIVVFAKYGGTEIEIDGEEYVI 89 (100)
T ss_dssp TTCEEEEECCCCSSCTTCCCCCTTTSCCCSEEEESCCCCCEECTTSC-EE-CCSCCTTCEEEECTTCSEEEECSSCEEEE
T ss_pred CCEEEEEEccccccccceEEeCcccccCCcCCEEEEECCCcCCCCCC-EE-eeecCCCCEEEECCCCCeEEEECCEEEEE
Confidence 4999998864220 23567888887774321 1111 00 01125799999998888888888777887
Q ss_pred ecCC
Q psy15749 111 EGDH 114 (164)
Q Consensus 111 lgDn 114 (164)
+.+.
T Consensus 90 ~re~ 93 (100)
T 1we3_O 90 LSER 93 (100)
T ss_dssp ECTT
T ss_pred EEhH
Confidence 7543
No 13
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=66.88 E-value=5.3 Score=29.16 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=42.2
Q ss_pred CcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeC----CCEEEecc---C---c---cce
Q psy15749 34 QPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVE----GDVVSTLD---Y---K---SNV 100 (164)
Q Consensus 34 ~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialp----GD~v~~~~---~---~---~~~ 100 (164)
+|....+ ++.+...+.+. ...++.||-|.+.+++++...+|.||..+- |+ ..++. + + ...
T Consensus 6 ~~~~~~~----~r~~y~~~~~~--g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~-~~v~v~WfyRPeet~~~~~ 78 (174)
T 1w4s_A 6 SAGLSSL----HRTYSQDCSFK--NSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGE-KWLYGCWFYRPNETFHLAT 78 (174)
T ss_dssp --------------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCC-EEEEEEEEECGGGSCCCTT
T ss_pred CccccCC----CcEEeEEEEEC--CEEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCC-EEEEEEEecCHHHcccccC
Confidence 3555555 66666555555 678999999999887655678888887753 32 22211 0 0 000
Q ss_pred eeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEE
Q psy15749 101 VKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSII 140 (164)
Q Consensus 101 ~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~ 140 (164)
...-++++|.. .++--++.+.|+||+....
T Consensus 79 ~~~~~~EvF~S----------~~~d~~~~~~I~gkC~V~~ 108 (174)
T 1w4s_A 79 RKFLEKEVFKS----------DYYNKVPVSKILGKCVVMF 108 (174)
T ss_dssp CEEETTEEEEE----------EEEEEEEGGGEEEEEEEEE
T ss_pred CcCCCCeeEEe----------CCcceecHHHeeeeEEEEE
Confidence 11124555552 3445678888999986554
No 14
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=54.68 E-value=50 Score=22.85 Aligned_cols=32 Identities=19% Similarity=0.424 Sum_probs=23.6
Q ss_pred eeeecCCeEEEecCCCCCCCCCCccccccCCC
Q psy15749 100 VVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGL 131 (164)
Q Consensus 100 ~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~ 131 (164)
.....+|.+-++.++..+..-+|-||||++|.
T Consensus 76 ~i~FddNa~Vlin~~~g~p~GTrI~GpVarEl 107 (122)
T 3r8s_K 76 VIRFDGNACVLLNNNSEQPIGTRIFGPVTREL 107 (122)
T ss_dssp EEEESSCEEEEEETTTEEESCSCBCSCCCGGG
T ss_pred EEEcCCceEEEEeCCCCCEeeeEEEccccHHH
Confidence 34556677777777645788899999999864
No 15
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=52.52 E-value=55 Score=22.65 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=21.5
Q ss_pred eeecCCeEEEecCCCCCCCCCCccccccCC
Q psy15749 101 VKVPQGHIWVEGDHVGHSMDSNMFGPVSMG 130 (164)
Q Consensus 101 ~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~ 130 (164)
....+|.+-++.++. +..-+|-||||++|
T Consensus 77 i~FddNa~Vlin~~~-~p~GTrI~GpVarE 105 (122)
T 3v2d_O 77 IRFDDNAAVIINNQL-EPRGTRVFGPVARE 105 (122)
T ss_dssp EEESSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred EEcCCcEEEEECCCC-CEeeeEEEccchHH
Confidence 445566666666653 78899999999986
No 16
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=40.19 E-value=89 Score=21.53 Aligned_cols=30 Identities=13% Similarity=0.376 Sum_probs=21.8
Q ss_pred eeecCCeEEEecCCCCCCCCCCccccccCCC
Q psy15749 101 VKVPQGHIWVEGDHVGHSMDSNMFGPVSMGL 131 (164)
Q Consensus 101 ~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~ 131 (164)
....+|.+-++.++ .+..-+|-||||++|.
T Consensus 77 i~FddNa~Vlin~~-g~p~GTrI~GPVarEl 106 (121)
T 3bbo_M 77 IRYDDNAAVIIDQE-GNPKGTRIFGAIAREL 106 (121)
T ss_dssp ECCSSCEEEECCTT-SSCSSSCCCSCCCGGG
T ss_pred EEeCCceEEEECCC-CCEeEeEEEcCcCHHH
Confidence 44455666666655 4788999999999874
No 17
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=37.74 E-value=1.1e+02 Score=21.66 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=22.4
Q ss_pred eeeecCCeEEEecCCCCCCCCCCccccccCCC
Q psy15749 100 VVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGL 131 (164)
Q Consensus 100 ~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~ 131 (164)
.+...+|.+-++.++ .+..-+|-||||++|.
T Consensus 92 ~i~FddNA~Vlin~~-g~p~GTrI~GPVarEl 122 (137)
T 3u5e_V 92 FLYFEDNAGVIANPK-GEMKGSAITGPVGKEC 122 (137)
T ss_dssp EEEESSCEEEEBCTT-CCBSSSCBCSCBCHHH
T ss_pred EEEcCCceEEEECCC-CCEeeeEEEcchhHHH
Confidence 345556666666655 4788999999999863
No 18
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=31.44 E-value=37 Score=21.66 Aligned_cols=11 Identities=18% Similarity=0.096 Sum_probs=6.6
Q ss_pred CcceeeEEEEe
Q psy15749 60 GLQRGDIVSLV 70 (164)
Q Consensus 60 ~~~rGDiVvf~ 70 (164)
.+..||.|.+.
T Consensus 53 ~Il~GD~V~ve 63 (79)
T 3i4o_A 53 RILPEDRVVVE 63 (79)
T ss_dssp CCCTTCEEEEE
T ss_pred cCCCCCEEEEE
Confidence 45566666665
No 19
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=29.65 E-value=27 Score=23.49 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=20.3
Q ss_pred CCCcceeeEEEEecCCCCCcceEEEEEeeCC
Q psy15749 58 DIGLQRGDIVSLVSPKDPGQKIIKRIVGVEG 88 (164)
Q Consensus 58 ~~~~~rGDiVvf~~p~~~~~~~iKRVialpG 88 (164)
.-.|+|||.|+++ ..+++++|-.-.-|
T Consensus 61 gYrP~r~D~Vv~~----Gk~y~Vtr~~~~ng 87 (102)
T 2pp6_A 61 NVIPRRGDRVVLR----GSEFTVTRIRRFNG 87 (102)
T ss_dssp SCCCCTTCEEEET----TEEEEEEEEEEETT
T ss_pred CcccCCCCEEEEc----CcEEEEEEEEEECC
Confidence 4579999999996 36788888754433
No 20
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=29.26 E-value=43 Score=22.37 Aligned_cols=10 Identities=30% Similarity=0.660 Sum_probs=5.6
Q ss_pred cceeeEEEEe
Q psy15749 61 LQRGDIVSLV 70 (164)
Q Consensus 61 ~~rGDiVvf~ 70 (164)
+.+||.|+..
T Consensus 59 I~~GD~VlVe 68 (102)
T 1jt8_A 59 VREGDVVIVK 68 (102)
T ss_dssp CCSCEEEEEC
T ss_pred ecCCCEEEEE
Confidence 4556655554
No 21
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=26.74 E-value=45 Score=23.07 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=21.9
Q ss_pred eeecCCeEEEecCCCCCCCCCCccccccCC
Q psy15749 101 VKVPQGHIWVEGDHVGHSMDSNMFGPVSMG 130 (164)
Q Consensus 101 ~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~ 130 (164)
....+|.+-++.++. +..-+|-||||++|
T Consensus 77 i~FddNa~Vlin~~g-~p~GTrI~GPVarE 105 (122)
T 1whi_A 77 IRFDENACVIIRDDK-SPRGTRIFGPVARE 105 (122)
T ss_dssp ECCSSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred EEeCCceEEEECCCC-CEeeeEEEccchHH
Confidence 445566777776664 78899999999976
No 22
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.78 E-value=1.4e+02 Score=18.54 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=32.1
Q ss_pred CCCcceeeEEEEecCCCCCcceEEEEEeeCCC---EEEeccCccceeeecCCeE
Q psy15749 58 DIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGD---VVSTLDYKSNVVKVPQGHI 108 (164)
Q Consensus 58 ~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD---~v~~~~~~~~~~~vp~~~~ 108 (164)
...+++||.++.+.. .+..+--+|.++.++ +|.+.+| ..-+++..++
T Consensus 7 ~~~~kvGd~clA~ws--Dg~~Y~A~I~~v~~~~~~~V~f~Dy--n~e~v~~~~l 56 (74)
T 2equ_A 7 GFDFKAGEEVLARWT--DCRYYPAKIEAINKEGTFTVQFYDG--VIRCLKRMHI 56 (74)
T ss_dssp CCCCCTTCEEEEECS--SSSEEEEEEEEESTTSSEEEEETTS--CEEEECGGGE
T ss_pred CCCCCCCCEEEEECC--CCCEEEEEEEEECCCCEEEEEEecC--CeEEecHHHC
Confidence 457899999999986 467888899888763 4555555 3344444443
No 23
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=22.80 E-value=62 Score=20.84 Aligned_cols=14 Identities=43% Similarity=0.548 Sum_probs=11.7
Q ss_pred CCCcceeeEEEEec
Q psy15749 58 DIGLQRGDIVSLVS 71 (164)
Q Consensus 58 ~~~~~rGDiVvf~~ 71 (164)
.++++.||++.|+.
T Consensus 35 Dr~~~vGD~l~l~E 48 (83)
T 3iuw_A 35 DRNFQVGDILILEE 48 (83)
T ss_dssp CSCCCTTCEEEEEE
T ss_pred ccCCCCCCEEEEEE
Confidence 56799999999863
No 24
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.39 E-value=67 Score=21.75 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=8.7
Q ss_pred CcceeeEEEEec
Q psy15749 60 GLQRGDIVSLVS 71 (164)
Q Consensus 60 ~~~rGDiVvf~~ 71 (164)
-+.+||+|+...
T Consensus 53 wI~~GD~VlVe~ 64 (111)
T 2dgy_A 53 WIKRGDFLIVDP 64 (111)
T ss_dssp CCCSSCEEEEEE
T ss_pred EEcCCCEEEEEe
Confidence 467788888764
No 25
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=20.91 E-value=63 Score=22.68 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=22.6
Q ss_pred eeeecCCeEEEecCCCCCCCCCCccccccCCC
Q psy15749 100 VVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGL 131 (164)
Q Consensus 100 ~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~ 131 (164)
.....+|.+-++.++ .+..-+|-||||++|.
T Consensus 87 ~i~FddNA~Vlin~~-g~p~GTrI~GPVarEl 117 (132)
T 1vq8_K 87 RVKFEDNAAVIVDEN-EDPRGTELKGPIAREV 117 (132)
T ss_dssp EEEESSCEEEEECTT-SCBSSSCBCSEECHHH
T ss_pred EEEeCCceEEEECCC-CCEeEEEEEcCcCHHH
Confidence 345566677666665 4788899999999863
No 26
>2kyw_A Adhesion exoprotein; structural genomics, northeast structural genomics consortiu GFT, PSI-2, protein structure initiative; NMR {Pediococcus pentosaceus}
Probab=20.27 E-value=1.7e+02 Score=18.47 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=28.2
Q ss_pred EEEeeCCCEEEeccCccceeeecCCeEEEecCCCCCCCCCCc
Q psy15749 82 RIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNM 123 (164)
Q Consensus 82 RVialpGD~v~~~~~~~~~~~vp~~~~~vlgDn~~~s~DSR~ 123 (164)
-|.|.-+|++... +++|+|+=++-||.--.|.|...
T Consensus 24 tvsGKTDEtVk~~------i~iPdgYE~Vggd~~~~~~~~~~ 59 (87)
T 2kyw_A 24 TVTGKTDDSTTYT------VTIPDGYEYVGTDGGVVSSDGKT 59 (87)
T ss_dssp EEEECTTCEEEEE------CCCCTTEEEEEEESSEECTTSSE
T ss_pred EEecccCCeeeec------cccCCCceEEcCCCCEEecCCCE
Confidence 4677778888764 78999999999988767777763
Done!