RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15749
         (164 letters)



>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli
           [TaxId: 562]}
          Length = 247

 Score = 45.3 bits (106), Expect = 7e-07
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 96  YKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRW 146
            +     VP G  ++ GD+  +S DS  +G V    +  +A++I     + 
Sbjct: 180 QQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQ 230


>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
          factor ERF2, post-G domain {Fission yeast
          (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 95

 Score = 24.4 bits (53), Expect = 3.5
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)

Query: 54 IKGDDIGLQRGDIVSLVSPKDP 75
          ++GDD  +Q G +  L S K+P
Sbjct: 75 VRGDDSDVQTGYV--LTSTKNP 94


>d2buka1 b.121.7.1 (A:12-195) STNV coat protein {Satellite tobacco
          necrosis virus [TaxId: 12881]}
          Length = 184

 Score = 24.6 bits (53), Expect = 5.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 49 LNRWIIKGDDIGLQRGDIVSLVS 71
          L+  II+GDDI  + GD V +VS
Sbjct: 36 LSNGIIQGDDINQRSGDQVRIVS 58


>d1j6xa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS
          {Helicobacter pylori [TaxId: 210]}
          Length = 151

 Score = 24.2 bits (53), Expect = 6.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 73 KDPGQKIIKRIVGVEGDVVSTLD 95
          K P  +I  R  GV GD++   D
Sbjct: 16 KAPYVRIADRKKGVNGDLIVKYD 38


>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
          (GRB2), N- and C-terminal domains {Caenorhabditis
          elegans, SEM-5 [TaxId: 6239]}
          Length = 58

 Score = 22.7 bits (49), Expect = 8.9
 Identities = 6/20 (30%), Positives = 14/20 (70%)

Query: 57 DDIGLQRGDIVSLVSPKDPG 76
           ++  +RGD+++L++  DP 
Sbjct: 17 GELAFKRGDVITLINKDDPN 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 647,050
Number of extensions: 29167
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 7
Length of query: 164
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 85
Effective length of database: 1,322,926
Effective search space: 112448710
Effective search space used: 112448710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)