BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1575
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FSU|A Chain A, 4-Sulfatase (Human)
Length = 492
Score = 137 bits (344), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 123/229 (53%), Gaps = 26/229 (11%)
Query: 23 GWNDVGFHGENDIPTPNIDALAYNGIVLNRHYTLPTCTPSRAAFLTGKYPFRYGID-TXX 81
GWNDVGFHG I TP++DALA G++L+ +YT P TPSR+ LTG+Y R G+
Sbjct: 15 GWNDVGFHGSR-IRTPHLDALAAGGVLLDNYYTQPLXTPSRSQLLTGRYQIRTGLQHQII 73
Query: 82 XXXXXXXXXXTEKLLPQYLKELGYSTHLIGKWHIGCNKEELLPFNRGFDNHVGYWNG--- 138
EKLLPQ LKE GY+TH++GKWH+G ++E LP RGFD + GY G
Sbjct: 74 WPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSED 133
Query: 139 -----YLTYNDSIHETDFAVGLDARRNMERYAPQMSSKYLTDFFTDQSVHVIKSHNHSRP 193
T D+++ T A+ R+ E A + Y T+ FT +++ +I +H +P
Sbjct: 134 YYSHERCTLIDALNVTRCALDF---RDGEEVATGYKNMYSTNIFTKRAIALITNHPPEKP 190
Query: 194 LFLQITHAAVHTGTAGNAKLPTGLLQVPDMEENDRTFAHISNPDRRLFA 242
LFL + +VH LQVP EE + + I + +R +A
Sbjct: 191 LFLYLALQSVHEP-----------LQVP--EEYLKPYDFIQDKNRHHYA 226
>pdb|4FDI|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDI|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDJ|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
pdb|4FDJ|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
Length = 502
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 19/201 (9%)
Query: 23 GWNDVGFHGENDIPTPNIDALAYNGIVLNRHYTL-PTCTPSRAAFLTGKYPFRYGIDTXX 81
GW D+G +GE TPN+D +A G++ Y+ P +PSRAA LTG+ P R G T
Sbjct: 16 GWGDLGVYGEPSRETPNLDRMAAEGLLFPNFYSANPLXSPSRAALLTGRLPIRNGFYTTN 75
Query: 82 XXXXXXXXXX--------TEKLLPQYLKELGYSTHLIGKWHIGCNKEELLPFNRGFDNHV 133
+E+LLP+ LK+ GY + ++GKWH+G ++ + P GFD
Sbjct: 76 AHARNAYTPQEIVGGIPDSEQLLPELLKKAGYVSKIVGKWHLG-HRPQFHPLKHGFDEWF 134
Query: 134 GYWNGYLTYNDSIHETDFAVGLD---ARRNMERYAPQMSS--KYLTDFFTDQSVHVIKSH 188
G N + D+ + V D R E + + + LT + +++ IK
Sbjct: 135 GSPNCHFGPYDNKARPNIPVYRDWEMVGRYYEEFPINLKTGEANLTQIYLQEALDFIKRQ 194
Query: 189 NHSRPLFL----QITHAAVHT 205
P FL THA V+
Sbjct: 195 ARHHPFFLYWAVDATHAPVYA 215
>pdb|1HDH|A Chain A, Arylsulfatase From Pseudomonas Aeruginosa
pdb|1HDH|B Chain B, Arylsulfatase From Pseudomonas Aeruginosa
Length = 536
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 24/201 (11%)
Query: 23 GWNDVGFHGENDIPTPNIDALAYNGIVLNRHYTLPTCTPSRAAFLTGKYPFRYGIDTXXX 82
G++D+G G +I TPN+DALA G+ L +T T +P+R+ LTG GI T
Sbjct: 16 GFSDIGAFG-GEIATPNLDALAIAGLRLTDFHTASTXSPTRSMLLTGTDHHIAGIGTMAE 74
Query: 83 XXXXXXXXX-------TEKL--LPQYLKELGYSTHLIGKWHIGCNKEELLPFNRGFD--- 130
E++ LP+ L+E GY T + GKWH+G K E P RGF+
Sbjct: 75 ALTPELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHLGL-KPEQTPHARGFERSF 133
Query: 131 -------NHVGYWNGYLTYNDSIHETDFAVGLDARRNMERYAPQMSSKYLTDFFTDQSVH 183
NH G+ Y I + A+ ++ R ++ Y +D F D+ +
Sbjct: 134 SLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLP---EGFYSSDAFGDKLLQ 190
Query: 184 VIKSHNHSRPLFLQITHAAVH 204
+K + SRP F + +A H
Sbjct: 191 YLKERDQSRPFFAYLPFSAPH 211
>pdb|1P49|A Chain A, Structure Of Human Placental EstroneDHEA SULFATASE
Length = 562
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 23 GWNDVGFHGENDIPTPNIDALAYNGIVLNRHYTL-PTCTPSRAAFLTGKYPFRYGIDTXX 81
G D G +G I TPNID LA G+ L +H P TPSRAAF+TG+YP R G+ +
Sbjct: 17 GIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAASPLXTPSRAAFMTGRYPVRSGMASWS 76
Query: 82 XXXXXXXXXXT------EKLLPQYLKELGYSTHLIGKWHIG 116
+ E + LK+ GYST LIGKWH+G
Sbjct: 77 RTGVFLFTASSGGLPTDEITFAKLLKDQGYSTALIGKWHLG 117
>pdb|3ED4|A Chain A, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|B Chain B, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|C Chain C, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|D Chain D, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
Length = 502
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 88/211 (41%), Gaps = 35/211 (16%)
Query: 23 GWNDVGFHGENDIPTPNIDALAYNGIVLNRHYT-LPTCTPSRAAFLTGKYPFRYGIDTXX 81
G+ D+ +G + TPNID LA G+ +Y P +PSRA LTG+ PFR GI +
Sbjct: 39 GYGDLATYGHQIVKTPNIDRLAQEGVKFTDYYAPAPLSSPSRAGLLTGRMPFRTGIRSWI 98
Query: 82 XXXXXXXXXXTEKLLPQYLKELGYSTHLIGKWHI---GCNKEELLPFNRGFDNHVGYWNG 138
E + LK GY T ++GK H+ G ++ + GFD + G
Sbjct: 99 PSGKDVALGRNELTIANLLKAQGYDTAMMGKLHLNAGGDRTDQPQAQDMGFDYSLANTAG 158
Query: 139 YLTYNDSIHETDFAVGLDARRNMERY-----------------APQMSSKYLTDFFTDQS 181
++T LD + RY A +MS +Y+ + +
Sbjct: 159 FVT----------DATLDNAKERPRYGMVYPTGWLRNGQPTPRADKMSGEYV----SSEV 204
Query: 182 VHVIKSHNHSRPLFLQITHAAVHTGTAGNAK 212
V+ + + S+P FL + VH+ A K
Sbjct: 205 VNWLDNKKDSKPFFLYVAFTEVHSPLASPKK 235
>pdb|1E2S|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69a
Length = 489
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 23 GWNDVGFHGENDIPTPNIDALAYNGIVLNRHYT-LPTCTPSRAAFLTGKYPFRYGIDTXX 81
G+ D+G +G TPN+D LA G+ Y + TPSRAA LTG+ P R G+
Sbjct: 14 GYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLATPSRAALLTGRLPVRMGMYPGV 73
Query: 82 XXXXXXXXXXTEKL-LPQYLKELGYSTHLIGKWHIGCNKE-ELLPFNRGFDNHVG 134
E++ + + L GY T + GKWH+G E LP ++GF +G
Sbjct: 74 LVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLG 128
>pdb|1E3C|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s Soaked
In Synthetic Substrate
Length = 489
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 23 GWNDVGFHGENDIPTPNIDALAYNGIVLNRHYT-LPTCTPSRAAFLTGKYPFRYGIDTXX 81
G+ D+G +G TPN+D LA G+ Y + TPSRAA LTG+ P R G+
Sbjct: 14 GYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLSTPSRAALLTGRLPVRMGMYPGV 73
Query: 82 XXXXXXXXXXTEKL-LPQYLKELGYSTHLIGKWHIGCNKE-ELLPFNRGFDNHVG 134
E++ + + L GY T + GKWH+G E LP ++GF +G
Sbjct: 74 LVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLG 128
>pdb|1E1Z|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s
Length = 489
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 23 GWNDVGFHGENDIPTPNIDALAYNGIVLNRHYT-LPTCTPSRAAFLTGKYPFRYGIDTXX 81
G+ D+G +G TPN+D LA G+ Y + TPSRAA LTG+ P R G+
Sbjct: 14 GYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLSTPSRAALLTGRLPVRMGMYPGV 73
Query: 82 XXXXXXXXXXTEKL-LPQYLKELGYSTHLIGKWHIGCNKE-ELLPFNRGFDNHVG 134
E++ + + L GY T + GKWH+G E LP ++GF +G
Sbjct: 74 LVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLG 128
>pdb|1E33|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant P426l
Length = 489
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 23 GWNDVGFHGENDIPTPNIDALAYNGIVLNRHYT-LPTCTPSRAAFLTGKYPFRYGIDTXX 81
G+ D+G +G TPN+D LA G+ Y + TPSRAA LTG+ P R G+
Sbjct: 14 GYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLXTPSRAALLTGRLPVRMGMYPGV 73
Query: 82 XXXXXXXXXXTEKL-LPQYLKELGYSTHLIGKWHIGCNKE-ELLPFNRGFDNHVG 134
E++ + + L GY T + GKWH+G E LP ++GF +G
Sbjct: 74 LVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLG 128
>pdb|1N2K|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1N2L|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1AUK|A Chain A, Human Arylsulfatase A
Length = 489
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 23 GWNDVGFHGENDIPTPNIDALAYNGIVLNRHYT-LPTCTPSRAAFLTGKYPFRYGIDTXX 81
G+ D+G +G TPN+D LA G+ Y + TPSRAA LTG+ P R G+
Sbjct: 14 GYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLXTPSRAALLTGRLPVRMGMYPGV 73
Query: 82 XXXXXXXXXXTEKL-LPQYLKELGYSTHLIGKWHIGCNKE-ELLPFNRGFDNHVG 134
E++ + + L GY T + GKWH+G E LP ++GF +G
Sbjct: 74 LVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLG 128
>pdb|2QZU|A Chain A, Crystal Structure Of The Putative Sulfatase Yidj From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr123
Length = 491
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 27 VGFHGENDIPTPNIDALAYNGI-VLNRHYTLPTCTPSRAAFLTGKYPFRYGID---TXXX 82
+G G+ + TP++D LA GI N + P +P+R TG YP +
Sbjct: 43 IGCIGKEPVKTPHLDKLASEGINFTNAISSYPVSSPARGXLXTGXYPIGSKVTGNCNSET 102
Query: 83 XXXXXXXXXTEKLLPQYLKELGYSTHLIGKWHI 115
+ LK+ GY+ IGKWH+
Sbjct: 103 APYGVELSQNARCWSDVLKDQGYNXGYIGKWHL 135
>pdb|2VQR|A Chain A, Crystal Structure Of A Phosphonate Monoester Hydrolase
From Rhizobium Leguminosarum: A New Member Of The
Alkaline Phosphatase Superfamily
Length = 514
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 35 IPTPNIDALAYNGIVLNRHYT--LPTCTPSRAAFLTGKY 71
+ TPN+D L G+ H T +P C P+RA+ LTG Y
Sbjct: 31 LKTPNLDRLCREGVTFRNHVTTCVPXCGPARASLLTGLY 69
>pdb|2W8S|A Chain A, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 513
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 35 IPTPNIDALAYNGIVLNRHYT--LPTCTPSRAAFLTGKY 71
+ TPN+D L G+ H T +P C P+RA+ LTG Y
Sbjct: 30 LKTPNLDRLCREGLTFRNHVTTCVPXCGPARASLLTGLY 68
>pdb|2W8S|B Chain B, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|C Chain C, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|D Chain D, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 514
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 35 IPTPNIDALAYNGIVLNRHYT--LPTCTPSRAAFLTGKY 71
+ TPN+D L G+ H T +P C P+RA+ LTG Y
Sbjct: 31 LKTPNLDRLCREGLTFRNHVTTCVPXCGPARASLLTGLY 69
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 16 TEKLLPQGW-NDVGFHGENDIPTPNIDALAYNGIVLN 51
+++L GW D+ GEN +P DA AYN I+LN
Sbjct: 363 VQQVLSGGWREDIRVAGENALP--RYDATAYNQIILN 397
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 16 TEKLLPQGW-NDVGFHGENDIPTPNIDALAYNGIVLN 51
+++L GW D+ GEN +P DA AYN I+LN
Sbjct: 363 VQQVLSGGWREDIRVAGENALP--RYDATAYNQIILN 397
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 16 TEKLLPQGW-NDVGFHGENDIPTPNIDALAYNGIVLN 51
+++L GW D+ GEN +P DA AYN I+LN
Sbjct: 359 VQQVLSGGWREDIRVAGENALP--RYDATAYNQIILN 393
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 16 TEKLLPQGW-NDVGFHGENDIPTPNIDALAYNGIVLN 51
+++L GW D+ GEN +P DA AYN I+LN
Sbjct: 363 VQQVLSGGWREDIRVAGENALP--RYDATAYNQIILN 397
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 16 TEKLLPQGW-NDVGFHGENDIPTPNIDALAYNGIVLN 51
+++L GW D+ GEN +P DA AYN I+LN
Sbjct: 363 VQQVLSGGWREDIRVAGENALP--RYDATAYNQIILN 397
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 16 TEKLLPQGW-NDVGFHGENDIPTPNIDALAYNGIVLN 51
+++L GW D+ GEN +P DA AYN I+LN
Sbjct: 363 VQQVLSGGWREDIRVAGENALP--RYDATAYNQIILN 397
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 16 TEKLLPQGW-NDVGFHGENDIPTPNIDALAYNGIVLN 51
+++L GW D+ GEN +P DA AYN I+LN
Sbjct: 363 VQQVLSGGWREDIRVAGENALP--RYDATAYNQIILN 397
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 16 TEKLLPQGW-NDVGFHGENDIPTPNIDALAYNGIVLN 51
+++L GW D+ GEN +P DA AYN I+LN
Sbjct: 363 VQQVLSGGWREDIRVAGENALP--RYDATAYNQIILN 397
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 16 TEKLLPQGW-NDVGFHGENDIPTPNIDALAYNGIVLN 51
+++L GW D+ GEN +P DA AYN I+LN
Sbjct: 363 VQQVLSGGWREDIRVAGENALP--RYDATAYNQIILN 397
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 16 TEKLLPQGW-NDVGFHGENDIPTPNIDALAYNGIVLN 51
+++L GW D+ GEN +P DA AYN I+LN
Sbjct: 363 VQQVLSGGWREDIRVAGENALP--RYDATAYNQIILN 397
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 16 TEKLLPQGW-NDVGFHGENDIPTPNIDALAYNGIVLN 51
+++L GW D+ GEN +P DA AYN I+LN
Sbjct: 363 VQQVLSGGWREDIRVAGENALP--RYDATAYNQIILN 397
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 16 TEKLLPQGW-NDVGFHGENDIPTPNIDALAYNGIVLN 51
+++L GW D+ G+N +P DA AYN I+LN
Sbjct: 363 VQQVLSGGWREDIRVAGQNALP--RYDATAYNQIILN 397
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 16 TEKLLPQGWND-VGFHGENDIPTPNIDALAYNGIVLN 51
+++L GW + + GEN +P DA AYN I+LN
Sbjct: 363 VQQVLSGGWREYIRVAGENALP--RYDATAYNQIILN 397
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 16 TEKLLPQGWND-VGFHGENDIPTPNIDALAYNGIVLN 51
+++L GW + + GEN +P DA AYN I+LN
Sbjct: 363 VQQVLSGGWREYIRVAGENALP--RYDATAYNQIILN 397
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,363,048
Number of Sequences: 62578
Number of extensions: 301116
Number of successful extensions: 623
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 28
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)