RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1575
(242 letters)
>1fsu_A N-acetylgalactosamine-4-sulfatase; glycosaminoglycan degradation,
hydrolase, glycopr lysosome; HET: ALS NAG; 2.50A {Homo
sapiens} SCOP: c.76.1.2
Length = 492
Score = 231 bits (590), Expect = 1e-73
Identities = 90/228 (39%), Positives = 124/228 (54%), Gaps = 22/228 (9%)
Query: 22 QGWNDVGFHGENDIPTPNIDALAYNGIVLNRHYTLPTCTPSRAAFLTGKYPFRYGI-DTP 80
GWNDVGFHG + I TP++DALA G++L+ +YT P TPSR+ LTG+Y R G+
Sbjct: 14 LGWNDVGFHG-SRIRTPHLDALAAGGVLLDNYYTQPLXTPSRSQLLTGRYQIRTGLQHQI 72
Query: 81 VGAGVAKAVPVTEKLLPQYLKELGYSTHLIGKWHIGCNKEELLPFNRGFDNHVGYWNGYL 140
+ VP+ EKLLPQ LKE GY+TH++GKWH+G ++E LP RGFD + GY G
Sbjct: 73 IWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSE 132
Query: 141 TYNDSIHETDF------AVGLDARRNMERYAPQMSSKYLTDFFTDQSVHVIKSHNHSRPL 194
Y T LD R E A + Y T+ FT +++ +I +H +PL
Sbjct: 133 DYYSHERCTLIDALNVTRCALDFRDG-EEVATGYKNMYSTNIFTKRAIALITNHPPEKPL 191
Query: 195 FLQITHAAVHTGTAGNAKLPTGLLQVPDMEENDRTFAHISNPDRRLFA 242
FL + +VH P LQVP EE + + I + +R +A
Sbjct: 192 FLYLALQSVHE--------P---LQVP--EEYLKPYDFIQDKNRHHYA 226
>3ed4_A Arylsulfatase; structural genomics, PSI-2, protein structure INI
NEW YORK structural genomix research consortium,
NYSGXRC, transferase; 1.70A {Escherichia coli}
Length = 502
Score = 184 bits (468), Expect = 1e-55
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 7/191 (3%)
Query: 22 QGWNDVGFHGENDIPTPNIDALAYNGIVLNRHYTL-PTCTPSRAAFLTGKYPFRYGIDTP 80
G+ D+ +G + TPNID LA G+ +Y P +PSRA LTG+ PFR GI +
Sbjct: 38 LGYGDLATYGHQIVKTPNIDRLAQEGVKFTDYYAPAPLSSPSRAGLLTGRMPFRTGIRSW 97
Query: 81 VGAGVAKAVPVTEKLLPQYLKELGYSTHLIGKWHIGCNKEEL---LPFNRGFDNHVGYWN 137
+ +G A+ E + LK GY T ++GK H+ + + GFD +
Sbjct: 98 IPSGKDVALGRNELTIANLLKAQGYDTAMMGKLHLNAGGDRTDQPQAQDMGFDYSLANTA 157
Query: 138 G---YLTYNDSIHETDFAVGLDARRNMERYAPQMSSKYLTDFFTDQSVHVIKSHNHSRPL 194
G T +++ + + + K ++ + + V+ + + S+P
Sbjct: 158 GFVTDATLDNAKERPRYGMVYPTGWLRNGQPTPRADKMSGEYVSSEVVNWLDNKKDSKPF 217
Query: 195 FLQITHAAVHT 205
FL + VH+
Sbjct: 218 FLYVAFTEVHS 228
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal
enzyme, hydrolas; HET: NDG NAG; 2.10A {Homo sapiens}
SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P*
1e3c_P* 1e33_P*
Length = 489
Score = 156 bits (397), Expect = 3e-45
Identities = 51/200 (25%), Positives = 77/200 (38%), Gaps = 16/200 (8%)
Query: 22 QGWNDVGFHGENDIPTPNIDALAYNGIVLNRHYTLPTC-TPSRAAFLTGKYPFRYGIDTP 80
G+ D+G +G TPN+D LA G+ Y + TPSRAA LTG+ P R G+
Sbjct: 13 LGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLXTPSRAALLTGRLPVRMGMYPG 72
Query: 81 VGAGVAKA-VPVTEKLLPQYLKELGYSTHLIGKWHIGCNKEEL-LPFNRGFDNHVGYW-- 136
V ++ +P+ E + + L GY T + GKWH+G E LP ++GF +G
Sbjct: 73 VLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLGIPYS 132
Query: 137 ----------NGYLTYNDSIHETDFAVGLDARRNMERYAPQMSSKYLTDFFTDQSVHVIK 186
V + N+ A L + + ++
Sbjct: 133 HDQGPCQNLTCFPPATPCDGGCDQGLVPIPLLANLSVEAQPPWLPGLEARYMAFAHDLMA 192
Query: 187 -SHNHSRPLFLQITHAAVHT 205
+ RP FL H
Sbjct: 193 DAQRQDRPFFLYYASHHTHY 212
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacteroides fragilis}
Length = 491
Score = 150 bits (381), Expect = 7e-43
Identities = 39/206 (18%), Positives = 74/206 (35%), Gaps = 32/206 (15%)
Query: 22 QGWNDVGFHGENDIPTPNIDALAYNGIVLNRHY-TLPTCTPSRAAFLTGKYPFRYGI--- 77
+ +G G+ + TP++D LA GI + P +P+R +TG YP +
Sbjct: 38 YRGDAIGCIGKEPVKTPHLDKLASEGINFTNAISSYPVSSPARGMLMTGMYPIGSKVTGN 97
Query: 78 DTPVGAGVAKAVPVTEKLLPQYLKELGYSTHLIGKWHIGCNKEELL-------------- 123
A + + LK+ GY+ IGKWH+ + +
Sbjct: 98 CNSETAPYGVELSQNARCWSDVLKDQGYNMGYIGKWHLDAPYKPYVDTYNNRGKVAWNEW 157
Query: 124 ---PFNRGFDNHVGYWNGYLTYNDSIHETDFAVGLDARRNMERYAPQMSSKYLTDFFTDQ 180
GFD +W Y TY+ + + R + +++ ++ +
Sbjct: 158 CPPERRHGFD----HWIAYGTYDYHLK------PMYWNTTAPRDSFYYVNQWGPEYEASK 207
Query: 181 SVHVIKSH-NHSRPLFLQITHAAVHT 205
++ I + +P L ++ HT
Sbjct: 208 AIEYINGQKDQKQPFALVVSMNPPHT 233
>1hdh_A Arylsulfatase; hydrolase, formylglycine hydrate; 1.3A {Pseudomonas
aeruginosa} SCOP: c.76.1.2
Length = 536
Score = 143 bits (362), Expect = 5e-40
Identities = 56/199 (28%), Positives = 83/199 (41%), Gaps = 18/199 (9%)
Query: 23 GWNDVGFHGENDIPTPNIDALAYNGIVLNRHYTLPTCTPSRAAFLTGKYPFRYGI----- 77
G++D+G G +I TPN+DALA G+ L +T T +P+R+ LTG GI
Sbjct: 16 GFSDIGAFG-GEIATPNLDALAIAGLRLTDFHTASTXSPTRSMLLTGTDHHIAGIGTMAE 74
Query: 78 ----DTPVGAGVAKAVPVTEKLLPQYLKELGYSTHLIGKWHIGCNKEELLPFNRGFDNHV 133
+ G + LP+ L+E GY T + GKWH+G K E P RGF+
Sbjct: 75 ALTPELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHLG-LKPEQTPHARGFERSF 133
Query: 134 GYWNG-------YLTYNDSIHETDFAVGLDARRNMERYAPQMSSKYLTDFFTDQSVHVIK 186
G Y++S + Y +D F D+ + +K
Sbjct: 134 SLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLPEGFYSSDAFGDKLLQYLK 193
Query: 187 SHNHSRPLFLQITHAAVHT 205
+ SRP F + +A H
Sbjct: 194 ERDQSRPFFAYLPFSAPHW 212
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint
center for structural genomics, JCSG; HET: EPE; 2.40A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 482
Score = 122 bits (307), Expect = 2e-32
Identities = 33/185 (17%), Positives = 54/185 (29%), Gaps = 30/185 (16%)
Query: 22 QGWNDVGFHGENDIPTPNIDALAYNGIVLNRHYT-LPTCTPSRAAFLTGKYPFRYGIDTP 80
VG +G+ T ID +A G++ + Y P PSRAA +G P + + +
Sbjct: 27 LTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGCPLSQPSRAALWSGMMPHQTNVRSN 86
Query: 81 VGAGVAKAVPVTEKLLPQYLKELGYSTHLIGKWHIGCNKEELLPFNRGFDNHVGYWNGYL 140
V +P L E GY GK H + RGF + +
Sbjct: 87 SSEPVNTRLPENVPTLGSLFSESGYEAVHFGKTH-------DMGSLRGFKHKEPVAKPF- 138
Query: 141 TYNDSIHETDFAVGLDARRNMERYAPQMSSKYLTDFFTDQSVHVIKSHNHSRPLFLQITH 200
+ + +L + +V + + P
Sbjct: 139 -TDPEFPVNN-------------------DSFLDVGTCEDAVAYLS-NPPKEPFICIADF 177
Query: 201 AAVHT 205
H
Sbjct: 178 QNPHN 182
>1p49_A Steryl-sulfatase; steroid biosynthesis, steroid sulfatase, estrone
sulfate, dehydroepiandrosterone sulfate, human placental
enzyme; HET: ALS BOG NAG; 2.60A {Homo sapiens} SCOP:
c.76.1.2
Length = 562
Score = 103 bits (258), Expect = 1e-25
Identities = 50/126 (39%), Positives = 64/126 (50%), Gaps = 12/126 (9%)
Query: 22 QGWNDVGFHGENDIPTPNIDALAYNGIVLNRHY-TLPTCTPSRAAFLTGKYPFRYGIDTP 80
G D G +G I TPNID LA G+ L +H P TPSRAAF+TG+YP R G+ +
Sbjct: 16 LGIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAASPLXTPSRAAFMTGRYPVRSGMASW 75
Query: 81 VGAGVA------KAVPVTEKLLPQYLKELGYSTHLIGKWHIGCNKE-----ELLPFNRGF 129
GV +P E + LK+ GYST LIGKWH+G + P + GF
Sbjct: 76 SRTGVFLFTASSGGLPTDEITFAKLLKDQGYSTALIGKWHLGMSCHSKTDFCHHPLHHGF 135
Query: 130 DNHVGY 135
+ G
Sbjct: 136 NYFYGI 141
Score = 35.1 bits (80), Expect = 0.018
Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 6/111 (5%)
Query: 95 LLPQYLKELGYSTHLIGKWHIGCNKEELLPFNRGFDNHVGYWNGYLTYNDSIHETDFAVG 154
LP + + T + + F+ F + + F +
Sbjct: 166 FLPLQIVGVTLLTLAALNCLGLLHVPLGVFFSLLFLAALILTLFLGFLHYFRPLNCFMM- 224
Query: 155 LDARRNMERYAPQMSSKYLTDFFTDQSVHVIKSHNHSRPLFLQITHAAVHT 205
RN E MS LT T ++ I+ N P L +++ VHT
Sbjct: 225 ----RNYEIIQQPMSYDNLTQRLTVEAAQFIQ-RNTETPFLLVLSYLHVHT 270
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 102 bits (255), Expect = 4e-25
Identities = 36/196 (18%), Positives = 60/196 (30%), Gaps = 35/196 (17%)
Query: 35 IPTPNIDALAYNGIVLNRHYT-LPTCTPSRAAFLTGKYPFR---YGIDTPVGAGVAKAVP 90
+ TPN+D L G+ H T P+RA+ LTG Y P+
Sbjct: 61 LKTPNLDRLCREGVTFRNHVTTCVPXGPARASLLTGLYLMNHRAVQNTVPL--------D 112
Query: 91 VTEKLLPQYLKELGYSTHLIGKWHIGCNKEELLPFNRGFDNHVGYWNGYLTYNDSIHETD 150
L + L+ +GY LIG + P + F +G+ +
Sbjct: 113 QRHLNLGKALRGVGYDPALIGYTTTVPDPRTTSPNDPRFRVLGDLMDGFHPVGAFEPNME 172
Query: 151 ------FAVGLDARRNMERYAPQMSSK----------------YLTDFFTDQSVHVIKSH 188
G D + + FFT++++ +K
Sbjct: 173 GYFGWVAQNGFDLPEHRPDIWLPEGEDAVAGATDRPSRIPKEFSDSTFFTERALTYLKGR 232
Query: 189 NHSRPLFLQITHAAVH 204
+P FL + + H
Sbjct: 233 -DGKPFFLHLGYYRPH 247
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 7e-04
Identities = 44/260 (16%), Positives = 72/260 (27%), Gaps = 93/260 (35%)
Query: 10 AKAVPVTEKLLPQGWNDVGFHGENDIPTPNIDALAY-----NGIVLNR--HYTLPTC--- 59
+ EK+ QG N + + EN TP+ D L I + + HY + T
Sbjct: 199 IRTTLDAEKVFTQGLNILEW-LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV-TAKLL 256
Query: 60 --TPSR-AAFLTGKYPFRYGIDTPVGAGVAKAVPVT-----EKLLPQYLKELGYSTHLIG 111
TP ++L G T G+ AV + E K + IG
Sbjct: 257 GFTPGELRSYLKGA--------TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF-IG 307
Query: 112 KWH--------------------------------IGCNKEELLPFNRGFDNHVGYWNGY 139
+E++ ++V N +
Sbjct: 308 -VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV-------QDYVNKTNSH 359
Query: 140 LTYNDSIHETDFAVGL-DARRNMERYAPQMSSKYLTDFF--------TDQSVHVIKSHNH 190
L + + L + +N+ P S L DQS +
Sbjct: 360 LPAGKQVE-----ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS----RIPFS 410
Query: 191 SRPL-----FLQITHAAVHT 205
R L FL + + H+
Sbjct: 411 ERKLKFSNRFLPVA-SPFHS 429
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.002
Identities = 30/229 (13%), Positives = 62/229 (27%), Gaps = 79/229 (34%)
Query: 11 KAVPVTEKLLPQGWNDVGFHGENDIPTPNIDALAYNGIVLNRHYTLPTCTPSRAAFLTGK 70
+ + LL W DV + ++ L ++ + T + +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVV----VNKLH-KYSLVEKQPKESTIS------I--- 428
Query: 71 YPFRYGIDTPVGAGVAKAVPVTEKLLPQYLKELGYSTHLIGKWHIGCNKEELLPFNRGFD 130
I + + + ++ Y + + + + P+ D
Sbjct: 429 ----PSIYLELKVKLENEYALHRSIVDHYNIPKTF-----------DSDDLIPPYL---D 470
Query: 131 NHVGYWNGYLTYNDSIHETDFAVGLDARRNMERYAPQMSSKYLTDF-FTDQSVHVIKSHN 189
Y+ ++ + H L + ER +L DF F +Q +
Sbjct: 471 Q---YFYSHIGH----H-------LKNIEHPERMT-LFRMVFL-DFRFLEQKI------- 507
Query: 190 HSRPLFLQITHAAVHTGTAGNAKLP-TGLLQVPDME-------ENDRTF 230
H TA NA LQ ++ +ND +
Sbjct: 508 -------------RHDSTAWNASGSILNTLQ--QLKFYKPYICDNDPKY 541
Score = 34.4 bits (78), Expect = 0.031
Identities = 22/161 (13%), Positives = 43/161 (26%), Gaps = 52/161 (32%)
Query: 81 VGAGVAKAVPVTEKLLPQYLKELGYSTHLIGKWHIGCNKEEL-------LP-----FNRG 128
+ A + + + E L+ K+ + C ++L P
Sbjct: 281 LSAATTTHISLDHHSMTLTPDE---VKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 129 FDNHVGYWNGYLTYNDSIHETDFAVGLDARRNMERYAPQMSSKYLTDFFTDQSVHVIKSH 188
+ + W+ + N T L+ + F SV
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLN----------VLEPAEYRKMFDRLSV------ 380
Query: 189 NHSRPLFLQITHAAVHTGTAGNAKLPTGLLQV--PDMEEND 227
F +A +PT LL + D+ ++D
Sbjct: 381 ------FPP------------SAHIPTILLSLIWFDVIKSD 403
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase,
phosphatase, cell membrane, transmembrane, LTA,
membrane, secreted, cell WALL; HET: TPO PG4; 2.35A
{Bacillus subtilis}
Length = 436
Score = 32.5 bits (74), Expect = 0.095
Identities = 16/136 (11%), Positives = 32/136 (23%), Gaps = 36/136 (26%)
Query: 27 VGFHGENDIPTPNIDALAYN--GIVLNRHYTLPTCTPSRA----AFLTGKYPFRYGIDTP 80
+ + + TP ++ LA++ + + T + YP
Sbjct: 47 IDYKIDGKEVTPFLNKLAHDNETFYFDNFFH-QTGQGKTSDAEFMMENSLYPLA------ 99
Query: 81 VGAGVAKAVPVTEKL--LPQYLKELGYSTHLIGKWHIGCNKEELLPFNRGFDNHVGYWNG 138
G L +P LK Y++ + F N N
Sbjct: 100 --QGSVFVNKAQNTLQSVPAILKSKNYTSATF------------HGNTQTFWN----RNE 141
Query: 139 YLT---YNDSIHETDF 151
+ +
Sbjct: 142 MYKAEGIDKFFDSAYY 157
>3lxq_A Uncharacterized protein VP1736; alkaline, phosphatase, MDOB,
sulfatase, PSI, MCSG, structural genomics; 1.95A {Vibrio
parahaemolyticus}
Length = 450
Score = 32.5 bits (74), Expect = 0.11
Identities = 30/136 (22%), Positives = 42/136 (30%), Gaps = 32/136 (23%)
Query: 23 GWNDVGFHGENDIPTPNIDALAYNGIVLNRHYTLPTCTPSRAAF--LTGKYPFRYGIDTP 80
G VG G + TPN+D L G + Y T + R TG P
Sbjct: 97 GAQFVGSLGGLPL-TPNLDELMQEGWQFTQMYATGTRS-VRGIEAVTTGFPP-------S 147
Query: 81 VGAGVAKAVPVTEKL--LPQYLKELGYSTHLIGKWHIGCNKEELLPFNRGFDNHVGYWNG 138
V K + LKE GY T I + G FDN
Sbjct: 148 PSRAVVKLSKSQTGFFTIADLLKEQGYHTQFI---YGG---------EANFDN----MKT 191
Query: 139 YLT---YNDSIHETDF 151
+ ++ + E ++
Sbjct: 192 FFFGNGFDQIVEEKNY 207
>3szy_A Phosphonoacetate hydrolase; alkaline phosphatase superfamily;
1.35A {Sinorhizobium meliloti} PDB: 3szz_A 3t00_A
3t01_A 3t02_A
Length = 427
Score = 32.5 bits (73), Expect = 0.11
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 30 HGENDIPTPNIDALAYNGIVLNRHYTLPTCT-PSRAAFLTGKYPFRYGI 77
+ P + + G V H +P+ T P+ + TG P +GI
Sbjct: 41 AAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGI 89
>1ei6_A Phosphonoacetate hydrolase; zinc,; HET: TLA; 2.10A {Pseudomonas
fluorescens} SCOP: c.76.1.4
Length = 406
Score = 31.7 bits (71), Expect = 0.18
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 37 TPNIDALAYNGIVLNRHYTLPTCT-PSRAAFLTGKYPFRYGI 77
P + L G VL +P+ T P+ + +TG P +GI
Sbjct: 40 APFLAELTGFGTVLTGDCVVPSFTNPNNLSIVTGAPPSVHGI 81
>3q3q_A Alkaline phosphatase; hydrolase; 1.95A {Sphingomonas SP}
Length = 565
Score = 30.5 bits (67), Expect = 0.52
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 37 TPNIDALAYNGIVLNRHYT--LPTCT-PSRAAFLTGKYPFRYGI 77
T + L G V R Y T T P + LTG P R GI
Sbjct: 64 TGGLKRLTSEGAVFPRGYQSHAATETCPGHSTILTGSRPSRTGI 107
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP,
hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB:
2gsn_A 2gsu_A* 2rh6_A*
Length = 393
Score = 28.9 bits (64), Expect = 1.4
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 33 NDIPTPNIDALAYNGIVLNRHYT-LPTCT-PSRAAFLTGKYPFRYGI 77
+ TPN+ LA G+ P+ T P+ +TG P +GI
Sbjct: 23 DRGITPNLSHLAREGVRARWMAPSYPSLTFPNHYTLVTGLRPDHHGI 69
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase,
hydrolase, glycosidase, family GH16, tropaeolum majus
xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A
2uwb_A 2vh9_A*
Length = 274
Score = 27.3 bits (60), Expect = 4.6
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 4/91 (4%)
Query: 135 YWNGYLTYNDSIHETDFAVGLDARRNMERYAPQMSSKYLTDFFTDQSVHVIKSHNH---- 190
+ G YN E + D ++ YA + + F D + +
Sbjct: 118 FIEGSGDYNIIGREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFP 177
Query: 191 SRPLFLQITHAAVHTGTAGNAKLPTGLLQVP 221
RPL++ + + N K P
Sbjct: 178 LRPLWVYGSVWDASSWATENGKYKADYRYQP 208
>2w5q_A Processed glycerol phosphate lipoteichoic acid synthase;
transmembrane, cell WALL biogenesis/degradation, LTAS,
membrane, secreted; 1.20A {Staphylococcus aureus} PDB:
2w5s_A* 2w5t_A* 2w5r_A*
Length = 424
Score = 27.2 bits (60), Expect = 4.9
Identities = 17/135 (12%), Positives = 33/135 (24%), Gaps = 32/135 (23%)
Query: 27 VGFHGENDIPTPNIDALAYNGIVLNRHYTLPTCTPSR------AAFLTGKYPFRYGIDTP 80
+ TP ++ L+ T Y P
Sbjct: 45 INKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYG------LP 98
Query: 81 VGAGVAKAVPVTEKLLPQYL-KELGYSTHLIGKWHIGCNKEELLPFNRGFDNHVGYWNGY 139
G+ + T + LP L ++ GY + ++ H + F N +
Sbjct: 99 QGSAFSLKGDNTYQSLPAILDQKQGYKSDVM---H---------GDYKTFWN----RDQV 142
Query: 140 LT---YNDSIHETDF 151
+ T +
Sbjct: 143 YKHFGIDKFYDATYY 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.431
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,946,972
Number of extensions: 238345
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 20
Length of query: 242
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,160,982
Effective search space: 628308282
Effective search space used: 628308282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)