RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1575
(242 letters)
>d1fsua_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 492
Score = 129 bits (325), Expect = 1e-35
Identities = 78/189 (41%), Positives = 108/189 (57%), Gaps = 7/189 (3%)
Query: 22 QGWNDVGFHGENDIPTPNIDALAYNGIVLNRHYTLPTCTPSRAAFLTGKYPFRYGI-DTP 80
GWNDVGFHG + I TP++DALA G++L+ +YT P TPSR+ LTG+Y R G+
Sbjct: 14 LGWNDVGFHG-SRIRTPHLDALAAGGVLLDNYYTQPLATPSRSQLLTGRYQIRTGLQHQI 72
Query: 81 VGAGVAKAVPVTEKLLPQYLKELGYSTHLIGKWHIGCNKEELLPFNRGFDNHVGYWNGYL 140
+ VP+ EKLLPQ LKE GY+TH++GKWH+G ++E LP RGFD + GY G
Sbjct: 73 IWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSE 132
Query: 141 TYNDSIHETDFAVGLDARRNM-----ERYAPQMSSKYLTDFFTDQSVHVIKSHNHSRPLF 195
Y T R + E A + Y T+ FT +++ +I +H +PLF
Sbjct: 133 DYYSHERCTLIDALNVTRCALDFRDGEEVATGYKNMYSTNIFTKRAIALITNHPPEKPLF 192
Query: 196 LQITHAAVH 204
L + +VH
Sbjct: 193 LYLALQSVH 201
>d1hdha_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 525
Score = 120 bits (300), Expect = 6e-32
Identities = 57/199 (28%), Positives = 84/199 (42%), Gaps = 18/199 (9%)
Query: 22 QGWNDVGFHGENDIPTPNIDALAYNGIVLNRHYTLPTCTPSRAAFLTGKYPFRYGIDTPV 81
G++D+G G +I TPN+DALA G+ L +T T +P+R+ LTG GI T
Sbjct: 13 LGFSDIGAFG-GEIATPNLDALAIAGLRLTDFHTASTGSPTRSMLLTGTDHHIAGIGTMA 71
Query: 82 GA---------GVAKAVPVTEKLLPQYLKELGYSTHLIGKWHIGCNKEELLPFNRGFDNH 132
A G + LP+ L+E GY T + GKWH+G E+ P RGF+
Sbjct: 72 EALTPELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHLGLKPEQ-TPHARGFERS 130
Query: 133 VGYWNGYLTYNDSIHETDFAVGLDARRNMERYAPQMS-------SKYLTDFFTDQSVHVI 185
G + D + + Y Y +D F D+ + +
Sbjct: 131 FSLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLPEGFYSSDAFGDKLLQYL 190
Query: 186 KSHNHSRPLFLQITHAAVH 204
K + SRP F + +A H
Sbjct: 191 KERDQSRPFFAYLPFSAPH 209
>d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 553
Score = 115 bits (288), Expect = 3e-30
Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 8/179 (4%)
Query: 22 QGWNDVGFHGENDIPTPNIDALAYNGIVLNRHY-TLPTCTPSRAAFLTGKYPFRYGIDTP 80
G D G +G I TPNID LA G+ L +H P TPSRAAF+TG+YP R G+ +
Sbjct: 15 LGIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAASPLATPSRAAFMTGRYPVRSGMASW 74
Query: 81 VGAGV------AKAVPVTEKLLPQYLKELGYSTHLIGKWHIGCNKEELLPFNRGFDNHVG 134
GV + +P E + LK+ GYST LIGKWH+G + F +H
Sbjct: 75 SRTGVFLFTASSGGLPTDEITFAKLLKDQGYSTALIGKWHLGMSCHSKTDFCHHPLHHGF 134
Query: 135 YWNGYLTYNDSIHETDFAVGLDARRNMERYAPQMSSKYLTDFFTDQSVHVIKSHNHSRP 193
+ ++ + + + G +R T +++ + +
Sbjct: 135 NYFYGISLTN-LRDCKPGEGSVFTTGFKRLVFLPLQIVGVTLLTLAALNCLGLLHVPLG 192
>d1auka_ c.76.1.2 (A:) Arylsulfatase A {Human (Homo sapiens) [TaxId:
9606]}
Length = 485
Score = 114 bits (284), Expect = 6e-30
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 22 QGWNDVGFHGENDIPTPNIDALAYNGIVLNRHY-TLPTCTPSRAAFLTGKYPFRYGIDTP 80
G+ D+G +G TPN+D LA G+ Y + TPSRAA LTG+ P R G+
Sbjct: 13 LGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLGTPSRAALLTGRLPVRMGMYPG 72
Query: 81 VGAGVAKA-VPVTEKLLPQYLKELGYSTHLIGKWHIG-CNKEELLPFNRGFDNHVGYWNG 138
V ++ +P+ E + + L GY T + GKWH+G + LP ++GF +G
Sbjct: 73 VLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLGIPYS 132
Query: 139 Y 139
+
Sbjct: 133 H 133
>d2i09a1 c.76.1.5 (A:2-107,A:227-403) Phosphopentomutase DeoB
{Streptococcus mutans [TaxId: 1309]}
Length = 283
Score = 56.9 bits (136), Expect = 2e-10
Identities = 24/183 (13%), Positives = 38/183 (20%), Gaps = 21/183 (11%)
Query: 23 GWNDVGFHGENDIPTPNIDALAYNGIVLNRHYTLPTCTPSRAAFLTGKYPFRYGIDTPVG 82
D +P D L + T+ P+ A G P +
Sbjct: 18 AAPDANNFSNAGVPDGASDTLG------HISKTVGLNVPNMAKIGLGNIPRDTPLK---- 67
Query: 83 AGVAKAVPVTEKLLPQYLKELGYSTHLIGKWHIGCNKEELLPFNRGFDNHVGYWNGYLTY 142
V T + LG T +G N E PF N +
Sbjct: 68 -TVPAENHPTGYVTKLEEVSLGKDTMTGHWEIMGLNITEPSPFAPTVLNKLADAGVSTYA 126
Query: 143 NDSIHETDFAVGLDARRNMERYAPQMSSKYLTDFFTDQSVHVIKSHNHSRPLFLQITHAA 202
I++ G+ + D + + F
Sbjct: 127 VGKINDIFNGSGITNDMGHNKSNSHG---------VDTLIKTMGLS-AFTKGFSFTNLVD 176
Query: 203 VHT 205
Sbjct: 177 FDA 179
>d1ei6a_ c.76.1.4 (A:) Phosphonoacetate hydrolase {Pseudomonas
fluorescens [TaxId: 294]}
Length = 406
Score = 54.5 bits (129), Expect = 3e-09
Identities = 23/185 (12%), Positives = 54/185 (29%), Gaps = 6/185 (3%)
Query: 26 DVGFHGENDIPTPNIDALAYNGIVLNRHYTLPT-CTPSRAAFLTGKYPFRYGIDTPVGAG 84
+ P + L G VL +P+ P+ + +TG P +GI G
Sbjct: 29 EYINQAIQAGQAPFLAELTGFGTVLTGDCVVPSFTNPNNLSIVTGAPPSVHGIC-----G 83
Query: 85 VAKAVPVTEKLLPQYLKELGYSTHLIGKWHIGCNKEELLPFNRGFDNHVGYWNGYLTYND 144
T++ + + + ++ + ++ N +G+ + ++
Sbjct: 84 NFFFDQETQEEVLMNDAKYLRAPTILAEMAKAGQLVAVVTAKDKLRNLLGHQLKGICFSA 143
Query: 145 SIHETDFAVGLDARRNMERYAPQMSSKYLTDFFTDQSVHVIKSHNHSRPLFLQITHAAVH 204
+ + R + S Y D + + RP F+ ++
Sbjct: 144 EKADQVNLEEHGVENILARVGMPVPSVYSADLSEFVFAAGLSLLTNERPDFMYLSTTDYV 203
Query: 205 TGTAG 209
Sbjct: 204 QHKHA 208
>d1o98a2 c.76.1.3 (A:2-76,A:311-510)
2,3-Bisphosphoglycerate-independent phosphoglycerate
mutase, catalytic domain {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 275
Score = 45.4 bits (106), Expect = 2e-06
Identities = 15/168 (8%), Positives = 35/168 (20%), Gaps = 15/168 (8%)
Query: 22 QGWNDVGFH-GENDIPTPNIDALAYNGIVLNRHYTLPTCTPSRAAFLTGKYPFRYGIDTP 80
D + PN D P T G +
Sbjct: 13 FALRDETYGNAVAQANKPNFDRYWNEY---------PHTTLKACGEAVGLPEGQ----MG 59
Query: 81 VGAGVAKAVPVTEKLLPQYLKELGYSTHLIGKWHIGCNKEELLPFNRGFDNHVGYWNGYL 140
+ + +G G + + E + F G +
Sbjct: 60 NSEVGHLNIGAGRIVYTNLDNTIGEVLSQHGLRQLRIAETE-KYPHVTFFMSGGREEEFP 118
Query: 141 TYNDSIHETDFAVGLDARRNMERYAPQMSSKYLTDFFTDQSVHVIKSH 188
+ + + D + M Y + + ++ + ++
Sbjct: 119 GEDRILINSPKVPTYDLKPEMSAYEVTDALLKEIEADKYDAIILNYAN 166
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 25.4 bits (56), Expect = 1.2
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 100 LKELGYSTHLIGKWHIGCNKEELLPFNRGFDNH 132
LK LG+ L+ + + C K E L N +
Sbjct: 11 LKALGFPESLVIQAYFACEKNENLAANFLLSQN 43
>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme,
central domain {Escherichia coli [TaxId: 562]}
Length = 396
Score = 26.9 bits (58), Expect = 2.3
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 14/47 (29%)
Query: 91 VTEKLLPQYLKELGYSTHLIGKWHIGCNKEELLPFNR-GFDNHVGYW 136
+ ++L+P Y K +G+ THL ELLP N FD GY
Sbjct: 42 LADQLVP-YAKWMGF-THL-----------ELLPINEHPFDGSWGYQ 75
>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 150
Score = 25.2 bits (55), Expect = 6.0
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 15 VTEKLLPQGWNDVGF 29
V LL QGW D GF
Sbjct: 37 VDRSLLLQGWQDQGF 51
>d2f7wa1 c.57.1.1 (A:2-174) MogA {Shewanella oneidensis [TaxId:
70863]}
Length = 173
Score = 24.8 bits (53), Expect = 8.2
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 100 LKELGYSTHLIGKWHIGCNKEELLPF 125
+ Y L+ ++ CN+ + PF
Sbjct: 146 FPAIPYCIDLMEGPYLECNEAVIKPF 171
>d1k55a_ e.3.1.1 (A:) Class D beta-lactamase {Pseudomonas
aeruginosa, OXA-10 [TaxId: 287]}
Length = 245
Score = 25.2 bits (54), Expect = 8.7
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 69 GKYPFRYGIDTPVGAGVAKAVPVTEKLLPQY 99
Y F + +D + + + K++
Sbjct: 211 EVYFFAFNMDIDNESKLPLRKSIPTKIMESE 241
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.431
Gapped
Lambda K H
0.267 0.0400 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 955,703
Number of extensions: 44820
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 16
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.7 bits)