BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15750
         (115 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FVZ|A Chain A, Structure Of Peptidyl-Alpha-Hydroxyglycine Alpha-Amidating
           Lyase (Pal)
 pdb|3FW0|A Chain A, Structure Of Peptidyl-Alpha-Hydroxyglycine Alpha-Amidating
           Lyase (Pal) Bound To Alpha-Hydroxyhippuric Acid (Non-
           Peptidic Substrate)
          Length = 329

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 52  PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           PI  DT+L +D +   ++ + GKN FY+PHG ++D  G  W+TDVALHQVFK
Sbjct: 65  PIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFK 116


>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
          Solution Of The Second Sh3 Domain From Ponsin
 pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
 pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
 pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
          Paxillin Proline Rich Region
          Length = 67

 Score = 25.8 bits (55), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 12 CDSIGYVARVDGTSMQPVCPSTYMDTL 38
           D   Y  R+ GTS Q + P TY+D +
Sbjct: 37 VDENWYEGRIPGTSRQGIFPITYVDVI 63


>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
          Domain-Containing Protein 1
          Length = 70

 Score = 25.8 bits (55), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 12 CDSIGYVARVDGTSMQPVCPSTYMDTL 38
           D   Y  R+ GTS Q + P TY+D +
Sbjct: 38 VDENWYEGRIPGTSRQGIFPITYVDVI 64


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,730,579
Number of Sequences: 62578
Number of extensions: 143287
Number of successful extensions: 235
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 8
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)