Query psy15750
Match_columns 115
No_of_seqs 203 out of 460
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 20:25:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1568|consensus 99.5 8.5E-14 1.8E-18 101.1 9.1 95 2-99 15-125 (174)
2 KOG3567|consensus 99.3 1.4E-12 3.1E-17 107.1 3.1 93 18-111 401-500 (501)
3 PF01436 NHL: NHL repeat; Int 99.2 6E-11 1.3E-15 62.7 4.2 28 77-104 1-28 (28)
4 TIGR02227 sigpep_I_bact signal 99.1 2.4E-11 5.2E-16 87.7 0.1 89 2-97 6-95 (163)
5 PRK10861 signal peptidase I; P 99.0 7.5E-11 1.6E-15 94.0 0.4 88 3-97 69-171 (324)
6 KOG0171|consensus 98.9 2.6E-10 5.7E-15 83.1 0.3 87 7-100 24-133 (176)
7 COG0681 LepB Signal peptidase 98.2 1.1E-06 2.4E-11 62.1 2.8 52 3-59 16-69 (166)
8 PLN02919 haloacid dehalogenase 98.2 5.2E-06 1.1E-10 74.8 7.4 55 55-109 824-890 (1057)
9 PLN02919 haloacid dehalogenase 98.0 1.2E-05 2.5E-10 72.6 6.9 55 53-108 587-655 (1057)
10 PF08450 SGL: SMP-30/Gluconola 97.9 1.5E-05 3.3E-10 59.6 4.7 56 56-111 156-217 (246)
11 TIGR02754 sod_Ni_protease nick 97.5 0.00035 7.6E-09 45.2 6.1 39 19-62 1-39 (90)
12 PF08450 SGL: SMP-30/Gluconola 97.3 0.0011 2.3E-08 49.6 7.2 50 56-108 115-165 (246)
13 cd06530 S26_SPase_I The S26 Ty 97.1 0.0018 3.9E-08 41.2 5.5 41 18-63 2-42 (85)
14 PF06977 SdiA-regulated: SdiA- 96.8 0.0054 1.2E-07 47.4 7.1 47 56-104 193-247 (248)
15 PF03088 Str_synth: Strictosid 96.7 0.0072 1.6E-07 40.0 6.0 52 55-108 36-88 (89)
16 PF00717 Peptidase_S24: Peptid 96.7 0.0021 4.7E-08 39.1 3.1 38 20-67 1-38 (70)
17 TIGR02228 sigpep_I_arch signal 96.6 0.0044 9.4E-08 44.9 4.6 37 20-63 35-71 (158)
18 KOG3567|consensus 96.4 0.00066 1.4E-08 56.6 -0.3 58 49-107 140-197 (501)
19 COG4257 Vgb Streptogramin lyas 96.3 0.012 2.6E-07 46.9 5.9 54 56-111 83-137 (353)
20 PF06739 SBBP: Beta-propeller 96.2 0.012 2.6E-07 32.8 4.0 29 70-98 4-33 (38)
21 PF01731 Arylesterase: Arylest 96.2 0.022 4.8E-07 37.4 5.8 49 55-107 35-84 (86)
22 smart00135 LY Low-density lipo 96.0 0.027 5.9E-07 30.5 5.1 35 76-110 7-42 (43)
23 TIGR02604 Piru_Ver_Nterm putat 95.8 0.031 6.7E-07 44.7 6.4 46 55-102 163-208 (367)
24 COG3386 Gluconolactonase [Carb 95.5 0.033 7.1E-07 44.2 5.3 33 78-110 213-246 (307)
25 KOG4499|consensus 95.3 0.049 1.1E-06 42.7 5.6 34 76-109 210-244 (310)
26 TIGR03032 conserved hypothetic 95.2 0.039 8.4E-07 44.5 4.8 48 61-113 190-238 (335)
27 COG3386 Gluconolactonase [Carb 95.0 0.1 2.2E-06 41.5 6.9 54 52-107 139-193 (307)
28 COG3391 Uncharacterized conser 94.8 0.17 3.7E-06 40.8 7.7 53 54-109 138-192 (381)
29 PF10282 Lactonase: Lactonase, 94.4 0.84 1.8E-05 36.0 10.7 92 15-109 225-324 (345)
30 cd06462 Peptidase_S24_S26 The 94.3 0.19 4.1E-06 31.0 5.5 43 18-69 2-45 (84)
31 PF03022 MRJP: Major royal jel 94.3 0.091 2E-06 41.1 4.8 66 19-101 186-259 (287)
32 COG3391 Uncharacterized conser 94.2 0.19 4.1E-06 40.5 6.7 52 56-109 96-150 (381)
33 TIGR03118 PEPCTERM_chp_1 conse 94.1 0.2 4.4E-06 40.3 6.6 55 55-110 221-283 (336)
34 PF13449 Phytase-like: Esteras 92.9 0.13 2.9E-06 40.5 3.8 32 79-110 86-123 (326)
35 COG2932 Predicted transcriptio 92.3 1.2 2.6E-05 33.0 8.0 43 17-68 124-166 (214)
36 cd06529 S24_LexA-like Peptidas 92.3 0.62 1.3E-05 28.6 5.5 40 18-67 2-41 (81)
37 TIGR02604 Piru_Ver_Nterm putat 92.2 0.24 5.2E-06 39.6 4.4 39 76-114 12-65 (367)
38 PF06977 SdiA-regulated: SdiA- 92.0 1.1 2.4E-05 34.6 7.7 50 56-106 44-93 (248)
39 PF03022 MRJP: Major royal jel 91.1 0.36 7.7E-06 37.8 4.2 33 80-112 188-220 (287)
40 COG3204 Uncharacterized protei 90.8 1.2 2.6E-05 35.8 6.8 31 76-107 282-312 (316)
41 TIGR03606 non_repeat_PQQ dehyd 90.3 1.2 2.6E-05 37.4 6.8 52 55-110 198-265 (454)
42 TIGR03866 PQQ_ABC_repeats PQQ- 89.8 2.5 5.3E-05 30.9 7.6 50 56-107 11-61 (300)
43 PF13360 PQQ_2: PQQ-like domai 89.3 1.5 3.3E-05 31.6 6.0 55 55-110 2-58 (238)
44 PF10282 Lactonase: Lactonase, 88.0 0.81 1.8E-05 36.1 4.1 34 77-110 143-177 (345)
45 KOG1214|consensus 88.0 0.66 1.4E-05 42.1 3.8 54 56-110 1090-1146(1289)
46 TIGR02658 TTQ_MADH_Hv methylam 86.7 3.6 7.8E-05 33.4 7.2 50 56-107 279-330 (352)
47 COG4257 Vgb Streptogramin lyas 86.1 2 4.4E-05 34.5 5.3 55 53-108 251-306 (353)
48 PF00058 Ldl_recept_b: Low-den 85.8 1.8 3.8E-05 24.2 3.7 30 57-87 13-42 (42)
49 TIGR02658 TTQ_MADH_Hv methylam 85.7 3.5 7.6E-05 33.5 6.7 49 56-107 27-85 (352)
50 PF07494 Reg_prop: Two compone 85.6 1.1 2.4E-05 22.2 2.4 14 81-94 8-21 (24)
51 KOG3342|consensus 85.5 2.2 4.7E-05 31.4 4.8 50 10-67 42-91 (180)
52 COG2706 3-carboxymuconate cycl 85.4 19 0.00041 29.4 10.7 98 13-114 222-328 (346)
53 TIGR02771 TraF_Ti conjugative 85.1 0.87 1.9E-05 33.2 2.7 46 49-96 43-108 (171)
54 PF07995 GSDH: Glucose / Sorbo 84.7 2.9 6.3E-05 33.1 5.7 55 52-110 144-217 (331)
55 TIGR02608 delta_60_rpt delta-6 84.6 2.1 4.5E-05 25.8 3.7 31 81-111 4-41 (55)
56 KOG1520|consensus 83.8 2 4.4E-05 35.3 4.5 23 76-98 159-181 (376)
57 TIGR03118 PEPCTERM_chp_1 conse 83.3 1.9 4.2E-05 34.8 4.1 33 75-107 20-52 (336)
58 TIGR03866 PQQ_ABC_repeats PQQ- 83.1 9.2 0.0002 27.8 7.5 52 56-109 229-281 (300)
59 PRK10276 DNA polymerase V subu 81.7 6.4 0.00014 27.3 5.9 43 17-69 52-95 (139)
60 KOG4659|consensus 81.6 2.8 6E-05 39.9 4.9 32 76-109 473-504 (1899)
61 PF03088 Str_synth: Strictosid 80.9 2.6 5.6E-05 27.7 3.4 28 82-109 2-47 (89)
62 PRK13838 conjugal transfer pil 80.9 1.5 3.2E-05 32.2 2.5 49 48-97 46-112 (176)
63 PF07995 GSDH: Glucose / Sorbo 78.8 2 4.4E-05 34.0 2.8 28 76-103 303-331 (331)
64 PF05787 DUF839: Bacterial pro 78.5 6.5 0.00014 33.5 5.9 26 75-100 433-459 (524)
65 PF02239 Cytochrom_D1: Cytochr 78.3 8.4 0.00018 31.1 6.3 89 15-107 15-108 (369)
66 COG2133 Glucose/sorbosone dehy 77.1 11 0.00025 31.2 6.8 51 57-108 343-398 (399)
67 PRK12423 LexA repressor; Provi 76.6 24 0.00051 26.0 7.9 43 17-69 115-158 (202)
68 TIGR02276 beta_rpt_yvtn 40-res 76.4 4.7 0.0001 21.4 3.1 19 89-107 4-22 (42)
69 PRK11028 6-phosphogluconolacto 75.3 13 0.00029 28.5 6.5 29 78-106 274-303 (330)
70 PRK00215 LexA repressor; Valid 72.9 13 0.00029 27.0 5.7 44 16-69 118-162 (205)
71 KOG1214|consensus 72.0 3.9 8.5E-05 37.3 3.1 39 74-112 1064-1103(1289)
72 PF05096 Glu_cyclase_2: Glutam 70.8 32 0.00069 27.0 7.6 50 54-107 108-157 (264)
73 COG3823 Glutamine cyclotransfe 70.8 20 0.00044 27.9 6.3 44 54-97 194-249 (262)
74 PRK11028 6-phosphogluconolacto 69.1 6.1 0.00013 30.4 3.3 30 78-107 126-156 (330)
75 KOG0278|consensus 68.0 23 0.00051 28.3 6.3 47 57-103 247-293 (334)
76 TIGR03606 non_repeat_PQQ dehyd 65.9 11 0.00023 31.8 4.3 34 75-108 27-60 (454)
77 cd00200 WD40 WD40 domain, foun 65.4 42 0.00091 23.1 6.9 49 56-105 241-289 (289)
78 PF11763 DIPSY: Cell-wall adhe 64.8 33 0.00072 24.0 5.9 48 55-102 59-107 (123)
79 PF10502 Peptidase_S26: Signal 64.8 2.3 5.1E-05 29.7 0.2 57 52-110 21-90 (138)
80 cd00200 WD40 WD40 domain, foun 64.6 34 0.00074 23.6 6.2 50 56-107 199-249 (289)
81 TIGR00498 lexA SOS regulatory 64.4 27 0.00059 25.2 5.8 46 16-71 111-157 (199)
82 KOG4378|consensus 63.2 24 0.00052 30.7 5.9 33 83-115 256-288 (673)
83 COG3211 PhoX Predicted phospha 61.8 7.5 0.00016 33.9 2.7 23 75-97 497-520 (616)
84 PF05096 Glu_cyclase_2: Glutam 60.5 36 0.00078 26.7 6.1 53 54-107 66-118 (264)
85 KOG4659|consensus 60.4 5.7 0.00012 37.9 1.9 28 76-103 660-687 (1899)
86 PF07250 Glyoxal_oxid_N: Glyox 60.2 9.1 0.0002 29.6 2.7 54 54-114 7-62 (243)
87 PF14269 Arylsulfotran_2: Aryl 58.6 88 0.0019 24.6 8.1 62 49-110 225-292 (299)
88 COG1520 FOG: WD40-like repeat 58.5 37 0.0008 26.8 6.1 52 55-110 77-133 (370)
89 PF13360 PQQ_2: PQQ-like domai 58.0 66 0.0014 22.9 7.3 53 54-110 44-98 (238)
90 COG3204 Uncharacterized protei 57.9 37 0.00081 27.4 5.9 49 56-105 108-156 (316)
91 PRK02888 nitrous-oxide reducta 55.5 38 0.00082 29.9 6.0 49 56-106 296-350 (635)
92 PF12396 DUF3659: Protein of u 55.2 10 0.00022 23.5 1.8 32 60-92 15-46 (64)
93 PRK13884 conjugal transfer pep 54.7 7.2 0.00016 28.6 1.3 47 50-97 48-113 (178)
94 KOG0263|consensus 52.6 41 0.00088 30.1 5.7 89 15-107 532-649 (707)
95 PF04841 Vps16_N: Vps16, N-ter 51.4 88 0.0019 25.6 7.3 51 57-110 62-112 (410)
96 PF00400 WD40: WD domain, G-be 51.2 33 0.00072 17.4 4.7 27 79-105 13-39 (39)
97 TIGR03300 assembly_YfgL outer 50.0 88 0.0019 24.4 6.9 49 56-109 75-126 (377)
98 PF13970 DUF4221: Domain of un 49.6 32 0.00069 27.0 4.3 55 55-110 66-126 (333)
99 KOG1520|consensus 49.1 18 0.00039 29.9 2.9 34 75-108 216-250 (376)
100 KOG0268|consensus 48.4 24 0.00053 29.3 3.5 56 55-112 209-264 (433)
101 PF13570 PQQ_3: PQQ-like domai 47.9 43 0.00093 17.8 4.4 22 84-107 18-39 (40)
102 COG2133 Glucose/sorbosone dehy 47.4 43 0.00094 27.8 4.9 20 79-98 240-260 (399)
103 PF13734 Inhibitor_I69: Spi pr 45.6 19 0.00041 24.0 2.1 27 86-112 49-76 (96)
104 KOG0292|consensus 44.7 41 0.00088 31.3 4.6 74 17-107 8-81 (1202)
105 KOG2096|consensus 44.6 66 0.0014 26.6 5.4 56 56-113 209-268 (420)
106 PRK12690 flgF flagellar basal 44.4 48 0.001 25.3 4.5 46 58-104 104-159 (238)
107 COG4681 Uncharacterized protei 43.8 24 0.00051 26.0 2.5 17 87-103 157-174 (181)
108 PF14269 Arylsulfotran_2: Aryl 43.0 1.6E+02 0.0035 23.1 7.5 43 55-97 164-220 (299)
109 KOG0272|consensus 41.7 88 0.0019 26.5 5.8 100 11-114 254-382 (459)
110 PTZ00420 coronin; Provisional 41.1 1.4E+02 0.0031 25.8 7.3 29 80-108 170-198 (568)
111 PF09816 EAF: RNA polymerase I 41.0 33 0.00072 22.9 2.8 17 55-71 78-94 (109)
112 PTZ00421 coronin; Provisional 40.7 2.2E+02 0.0048 24.0 9.3 51 56-107 148-198 (493)
113 PF02239 Cytochrom_D1: Cytochr 39.3 1.4E+02 0.0031 24.0 6.7 50 56-107 16-66 (369)
114 PF05567 Neisseria_PilC: Neiss 38.8 70 0.0015 25.6 4.8 55 54-109 179-241 (335)
115 KOG0291|consensus 35.9 1.4E+02 0.003 27.3 6.4 25 82-106 440-465 (893)
116 PF13540 RCC1_2: Regulator of 35.0 54 0.0012 16.7 2.5 16 80-95 9-24 (30)
117 KOG0316|consensus 34.4 1.5E+02 0.0033 23.6 5.8 49 56-105 81-129 (307)
118 KOG0285|consensus 34.4 2.5E+02 0.0055 23.6 7.3 52 56-108 173-224 (460)
119 KOG1446|consensus 34.3 1.6E+02 0.0036 23.7 6.1 22 10-31 92-113 (311)
120 COG1097 RRP4 RNA-binding prote 33.8 1.3E+02 0.0028 23.4 5.3 70 23-94 106-190 (239)
121 KOG0266|consensus 33.5 2E+02 0.0044 23.6 6.8 54 56-110 268-321 (456)
122 KOG0296|consensus 33.5 2.9E+02 0.0062 23.1 7.5 55 50-105 342-396 (399)
123 COG2706 3-carboxymuconate cycl 33.2 62 0.0013 26.5 3.6 34 80-113 147-182 (346)
124 KOG2110|consensus 33.2 2.4E+02 0.0051 23.6 7.0 60 37-97 134-193 (391)
125 KOG0973|consensus 31.6 1.8E+02 0.0038 27.1 6.5 49 56-105 151-199 (942)
126 PRK11138 outer membrane biogen 30.8 2.1E+02 0.0045 22.7 6.4 45 56-105 345-392 (394)
127 PF05787 DUF839: Bacterial pro 30.0 79 0.0017 27.0 4.0 36 74-109 346-401 (524)
128 PRK12692 flgG flagellar basal 29.7 1E+02 0.0023 23.8 4.3 35 59-94 120-160 (262)
129 TIGR03833 conserved hypothetic 29.1 1.4E+02 0.0031 18.4 3.9 30 62-91 21-55 (62)
130 PRK00756 acyltransferase NodA; 29.1 84 0.0018 23.5 3.5 19 14-32 138-156 (196)
131 cd02421 Peptidase_C39_likeD A 28.8 1.5E+02 0.0033 19.0 4.5 34 76-110 67-101 (124)
132 TIGR02488 flgG_G_neg flagellar 28.3 97 0.0021 23.7 3.9 38 56-94 115-158 (259)
133 KOG2315|consensus 28.3 2E+02 0.0043 25.2 6.0 59 48-110 289-368 (566)
134 KOG0266|consensus 28.1 3.3E+02 0.0071 22.4 7.2 52 56-108 225-277 (456)
135 KOG4499|consensus 27.9 1.9E+02 0.0042 23.0 5.4 30 76-105 156-186 (310)
136 PRK12693 flgG flagellar basal 27.7 95 0.0021 23.7 3.7 35 59-94 120-160 (261)
137 PF02333 Phytase: Phytase; In 27.3 1.2E+02 0.0027 25.0 4.5 37 68-107 200-237 (381)
138 KOG0291|consensus 27.2 2E+02 0.0042 26.4 5.9 34 80-113 481-517 (893)
139 KOG1272|consensus 26.8 85 0.0019 27.0 3.5 30 81-110 297-326 (545)
140 PF06433 Me-amine-dh_H: Methyl 26.6 1.7E+02 0.0037 23.9 5.1 48 57-106 270-319 (342)
141 PF12134 PRP8_domainIV: PRP8 d 26.6 61 0.0013 25.1 2.4 21 53-73 43-63 (231)
142 KOG0296|consensus 25.4 1.9E+02 0.0041 24.1 5.1 47 55-102 211-268 (399)
143 PRK12691 flgG flagellar basal 25.1 1E+02 0.0022 23.6 3.5 34 60-94 121-160 (262)
144 KOG1446|consensus 24.2 3.9E+02 0.0084 21.6 7.0 70 35-106 190-261 (311)
145 KOG0282|consensus 24.1 2.4E+02 0.0051 24.3 5.6 49 56-106 280-329 (503)
146 TIGR02542 B_forsyth_147 Bacter 24.0 95 0.002 21.9 2.8 37 79-115 45-86 (145)
147 KOG1645|consensus 23.9 3E+02 0.0064 23.4 6.1 52 56-110 216-269 (463)
148 PRK12689 flgF flagellar basal 23.8 1.6E+02 0.0035 22.6 4.4 36 58-94 110-154 (253)
149 PRK12819 flgG flagellar basal 23.7 1.6E+02 0.0035 22.6 4.4 36 58-94 117-161 (257)
150 COG4932 Predicted outer membra 23.5 3.4E+02 0.0073 26.5 6.9 78 1-97 1313-1390(1531)
151 COG4895 Uncharacterized conser 23.2 24 0.00051 21.6 -0.3 31 61-91 21-56 (63)
152 PRK12816 flgG flagellar basal 22.1 90 0.002 24.1 2.7 35 59-94 120-162 (264)
153 KOG2919|consensus 22.1 1.9E+02 0.0041 24.0 4.5 58 54-111 131-193 (406)
154 cd08047 TAF7 TATA Binding Prot 21.8 63 0.0014 23.2 1.7 47 38-85 63-116 (162)
155 PF12860 PAS_7: PAS fold 21.7 86 0.0019 20.0 2.2 19 79-97 4-23 (115)
156 TIGR00385 dsbE periplasmic pro 21.6 79 0.0017 22.2 2.1 32 58-92 120-151 (173)
157 PRK12694 flgG flagellar basal 21.5 1.4E+02 0.003 22.9 3.6 35 59-94 120-160 (260)
158 PRK12640 flgF flagellar basal 20.9 1.4E+02 0.003 22.9 3.5 35 59-94 105-147 (246)
159 PF03166 MH2: MH2 domain; Int 20.7 1.4E+02 0.0031 21.6 3.4 29 76-106 63-93 (181)
160 cd03010 TlpA_like_DsbE TlpA-li 20.4 74 0.0016 20.7 1.7 32 58-92 83-114 (127)
161 COG4014 Uncharacterized protei 20.3 1.7E+02 0.0037 19.5 3.3 31 66-96 12-43 (97)
162 smart00524 DWB Domain B in dwa 20.2 1.3E+02 0.0028 22.1 3.0 28 80-107 61-89 (171)
163 PRK15412 thiol:disulfide inter 20.1 83 0.0018 22.5 2.0 34 58-94 125-158 (185)
No 1
>KOG1568|consensus
Probab=99.52 E-value=8.5e-14 Score=101.11 Aligned_cols=95 Identities=25% Similarity=0.254 Sum_probs=70.7
Q ss_pred eeeee--EEEEEecceeeEEEeeeeecCccCCCCc----ccceEEeecccccCCCCCCCCCeEEEE-eCC-CCeEEeEec
Q psy15750 2 LVGIP--IGITFCDSIGYVARVDGTSMQPVCPSTY----MDTLYCSIEESESGTKRPISVDTVLTL-DKS-TGLLIDAWG 73 (115)
Q Consensus 2 ~~~~~--~~~~~~d~v~~~~~v~G~Sm~pt~~~~~----~D~~~~~~~~~~~~~~~~i~~~~I~vf-dp~-~G~~l~~~G 73 (115)
+.+++ +++||.|+|+++++|.|.||+||+|+.. .|+++.|+++. ++ +.+.+++|++| +|+ .++++.+..
T Consensus 15 ~~s~~~~v~~t~~DrV~~va~v~G~smqPtlnP~~~~~~~d~Vll~k~~v--~n-~~~~rGDiVvl~sP~~p~~~~iKRv 91 (174)
T KOG1568|consen 15 TGSLKWHVLLTFSDRVVHVAQVYGSSMQPTLNPTMNTNEKDTVLLRKWNV--KN-RKVSRGDIVVLKSPNDPDKVIIKRV 91 (174)
T ss_pred eeeeeeheeeeeeeeEEEEeEEecCcCCCccCCCcccccccEEEEEeecc--cc-ceeccCCEEEEeCCCChhheeeeee
Confidence 45566 7799999999999999999999999744 49999999999 44 77888999999 221 133333333
Q ss_pred CC-------CccCceeEEEccCCCEEEE-eCCCC
Q psy15750 74 KN-------KFYMPHGCTVDNKGFIWLT-DVALH 99 (115)
Q Consensus 74 ~g-------~f~~P~Gi~vd~~g~I~Vt-D~~~h 99 (115)
.+ .+..|+-+..-++|++||+ |+..|
T Consensus 92 ~alegd~~~t~~~k~~~v~vpkghcWVegDn~~h 125 (174)
T KOG1568|consen 92 AALEGDIMVTEDEKEEPVVVPKGHCWVEGDNQKH 125 (174)
T ss_pred ecccccEeccCCCCCCceecCCCcEEEecCCccc
Confidence 21 2445666677789999999 66555
No 2
>KOG3567|consensus
Probab=99.29 E-value=1.4e-12 Score=107.08 Aligned_cols=93 Identities=34% Similarity=0.568 Sum_probs=80.5
Q ss_pred EEEeeeeecCccCCC-------CcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC
Q psy15750 18 VARVDGTSMQPVCPS-------TYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF 90 (115)
Q Consensus 18 ~~~v~G~Sm~pt~~~-------~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~ 90 (115)
.++|+|++.+|.-+. .+||+.++...+.|+ .+++|....|++.++.+-..+.+-|+++|++|||+.+|+||+
T Consensus 401 lgqv~gva~d~~~~l~vfhr~g~vwd~~sfd~~f~~~-~~~pi~~~~ilvi~~~n~~~l~~~g~~~fylphgl~~dkdgf 479 (501)
T KOG3567|consen 401 LGQVSGVALDPKNNLVVFHRGGHVWDGNSFDSKFVYQ-QIGPIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGF 479 (501)
T ss_pred hheeeeeccCCccceEEEccCCceEeechhhhhhhhh-cccccccceEEEEcCcchhhhhhccCCceecCCcceecCCCc
Confidence 389999999999874 449999877777654 459999999999999555566677899999999999999999
Q ss_pred EEEEeCCCCEEEEeCCCCCCC
Q psy15750 91 IWLTDVALHQVFKTPYTYNFG 111 (115)
Q Consensus 91 I~VtD~~~h~V~~f~~~G~f~ 111 (115)
.|++|.+.|+|+|.+++++..
T Consensus 480 ~~~tdvash~v~k~k~~~~e~ 500 (501)
T KOG3567|consen 480 YWVTDVASHQVFKLKPNNKEG 500 (501)
T ss_pred EEeecccchhhhhcccccccC
Confidence 999999999999999998865
No 3
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=99.16 E-value=6e-11 Score=62.71 Aligned_cols=28 Identities=39% Similarity=0.659 Sum_probs=26.6
Q ss_pred ccCceeEEEccCCCEEEEeCCCCEEEEe
Q psy15750 77 FYMPHGCTVDNKGFIWLTDVALHQVFKT 104 (115)
Q Consensus 77 f~~P~Gi~vd~~g~I~VtD~~~h~V~~f 104 (115)
|..|+|+++|++|+|||+|.++|+|++|
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 5789999999999999999999999987
No 4
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=99.06 E-value=2.4e-11 Score=87.72 Aligned_cols=89 Identities=12% Similarity=0.177 Sum_probs=68.1
Q ss_pred eeeeeEEEEEecceeeEEEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEecCCCccCce
Q psy15750 2 LVGIPIGITFCDSIGYVARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPH 81 (115)
Q Consensus 2 ~~~~~~~~~~~d~v~~~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~ 81 (115)
++++.+++.+..++++..+|+|.||.||++.++ +...+++.++..++++++|++|.. +++--..+.|+...+|
T Consensus 6 ~~~~~~~~~i~~~~~~~~~v~g~SM~Ptl~~Gd-----~vlv~k~~~~~~~~~rGDiVvf~~-~~~~~~~~iKRVig~p- 78 (163)
T TIGR02227 6 LIAILLALLIRTFVFFPYKIPGGSMEPTLKEGD-----RILVNKFAYGTSDPKRGDIVVFKD-PDDNKNIYVKRVIGLP- 78 (163)
T ss_pred HHHHHHHHHHHhhEEEEEEECCcccccchhCCC-----EEEEEEeEcCCCCCCCCcEEEEec-CCCCCceeEEEEEecC-
Confidence 345566678889999999999999999999998 667788777788999999999976 3332234455666677
Q ss_pred eEEEc-cCCCEEEEeCC
Q psy15750 82 GCTVD-NKGFIWLTDVA 97 (115)
Q Consensus 82 Gi~vd-~~g~I~VtD~~ 97 (115)
|.++. .+|.+||++..
T Consensus 79 Gd~v~i~~~~l~vNg~~ 95 (163)
T TIGR02227 79 GDKVEFRDGKLYINGKK 95 (163)
T ss_pred CCEEEEECCEEEECCEE
Confidence 77776 67778876543
No 5
>PRK10861 signal peptidase I; Provisional
Probab=99.00 E-value=7.5e-11 Score=93.96 Aligned_cols=88 Identities=11% Similarity=-0.054 Sum_probs=71.5
Q ss_pred eeeeEEEEEecceeeEEEeeeeecCccCCCCcccceEEeecccccCCC------------CCCCCCeEEEEeCCCCeEEe
Q psy15750 3 VGIPIGITFCDSIGYVARVDGTSMQPVCPSTYMDTLYCSIEESESGTK------------RPISVDTVLTLDKSTGLLID 70 (115)
Q Consensus 3 ~~~~~~~~~~d~v~~~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~------------~~i~~~~I~vfdp~~G~~l~ 70 (115)
+++.+++++..++.+..+|+|.||.||++.++ +..+||++|.. +.+++++|+||.. ..+--.
T Consensus 69 ~~l~i~~~ir~fv~~~~~Ips~SM~PTL~~GD-----~IlVnK~~yg~~~p~~~~~~~~~~~p~RGDIVVF~~-P~~~~~ 142 (324)
T PRK10861 69 PVLAIVLIVRSFIYEPFQIPSGSMMPTLLIGD-----FILVEKFAYGIKDPITQTTLIETGHPKRGDIVVFKY-PEDPKL 142 (324)
T ss_pred HHHhHHHHHHhhEEEEEEECCCcCcCcccCCC-----EEEEEEeecCccCccccccccccCCCCCCCEEEEec-CCCCCC
Confidence 34566678899999999999999999999999 88888888753 6789999999964 333334
Q ss_pred EecCCCccCceeEEEc-c--CCCEEEEeCC
Q psy15750 71 AWGKNKFYMPHGCTVD-N--KGFIWLTDVA 97 (115)
Q Consensus 71 ~~G~g~f~~P~Gi~vd-~--~g~I~VtD~~ 97 (115)
.+.|+...+| |.+|. . ++.+||++..
T Consensus 143 ~yIKRVIGlP-GD~I~~~~~~~~l~iNg~~ 171 (324)
T PRK10861 143 DYIKRVVGLP-GDKVTYDPVSKEVTIQPGC 171 (324)
T ss_pred cEEEEeeecC-CcEEEEEeCCCEEEEcCcc
Confidence 5788899999 98887 3 7999999753
No 6
>KOG0171|consensus
Probab=98.90 E-value=2.6e-10 Score=83.11 Aligned_cols=87 Identities=16% Similarity=0.102 Sum_probs=62.0
Q ss_pred EEEEEecceeeEEEeeeeecCccCCC-CcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEecCCCccCc-----
Q psy15750 7 IGITFCDSIGYVARVDGTSMQPVCPS-TYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMP----- 80 (115)
Q Consensus 7 ~~~~~~d~v~~~~~v~G~Sm~pt~~~-~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~G~g~f~~P----- 80 (115)
+.++++.++|+++.++|.||.||++. ++ +...++.+++++-++.++|+++-. .-.....+.|+...+|
T Consensus 24 f~h~t~~yl~e~~~~~gpSM~PTl~~~gd-----~l~aEkls~~f~~~~~gDIVi~~s-P~~~~~~~cKRIva~eGD~v~ 97 (176)
T KOG0171|consen 24 FTHVTHEYLGEFVMCSGPSMEPTLHDGGD-----VLLAEKLSYRFRKPQVGDIVIAKS-PPDPKEHICKRIVAMEGDLVE 97 (176)
T ss_pred HHHHHHHHhcceeeccCCCcCceecCCCc-----EEehhhhhHhhcCCCCCCEEEEeC-CCCchhhhhheeeccCCceEE
Confidence 34567789999999999999999975 55 555688899999889999999943 3444344444433333
Q ss_pred -----ee-----------EEEccCCCEEEE-eCCCCE
Q psy15750 81 -----HG-----------CTVDNKGFIWLT-DVALHQ 100 (115)
Q Consensus 81 -----~G-----------i~vd~~g~I~Vt-D~~~h~ 100 (115)
.. |.| |.|++||. |+.+|+
T Consensus 98 v~~~~~~~n~~~e~~~~~i~V-P~GhVfv~GDN~~nS 133 (176)
T KOG0171|consen 98 VHDGPLVVNDLVEKFSTPIRV-PEGHVFVEGDNRNNS 133 (176)
T ss_pred EecCCcccchhhhhccceeec-cCceEEEecCCCCCc
Confidence 11 233 78999999 777663
No 7
>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion]
Probab=98.19 E-value=1.1e-06 Score=62.06 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=39.9
Q ss_pred eeeeEEEEE--ecceeeEEEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEE
Q psy15750 3 VGIPIGITF--CDSIGYVARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVL 59 (115)
Q Consensus 3 ~~~~~~~~~--~d~v~~~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~ 59 (115)
+++++++++ ..++.++..|+|.||+||++.+| +...+++++....+....+.
T Consensus 16 ~~~~~~~~i~~~~~~~~~~~V~s~SM~Ptl~~GD-----~v~v~k~~~~~~~~~~~~~~ 69 (166)
T COG0681 16 IAIILALIIGVRTFVFEPVVVPSGSMEPTLNVGD-----RVLVKKFSYGFGKLKVPDII 69 (166)
T ss_pred HHHHHhheeeeEEEEEEEEEECCCccccccccCC-----EEEEEeccccccCCccceee
Confidence 345555666 89999999999999999999998 77788877776544444433
No 8
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.18 E-value=5.2e-06 Score=74.83 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=44.7
Q ss_pred CCeEEEEeCCCCeEEeEecCC------------CccCceeEEEccCCCEEEEeCCCCEEEEeCCCCC
Q psy15750 55 VDTVLTLDKSTGLLIDAWGKN------------KFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYN 109 (115)
Q Consensus 55 ~~~I~vfdp~~G~~l~~~G~g------------~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~ 109 (115)
+++|.+||++++.+....|.| +|..|+|++++++|++||+|..+|+|.+++.+..
T Consensus 824 N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 824 NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 489999999555555444432 5779999999999999999999999999998653
No 9
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.04 E-value=1.2e-05 Score=72.59 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=45.8
Q ss_pred CCCCeEEEEeCCCCeEEeEecC-------------CCccCceeEEEccCCC-EEEEeCCCCEEEEeCCCC
Q psy15750 53 ISVDTVLTLDKSTGLLIDAWGK-------------NKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTY 108 (115)
Q Consensus 53 i~~~~I~vfdp~~G~~l~~~G~-------------g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G 108 (115)
..++.|.++|+ +|+++..+|. ..|..|+|+++|++|+ |||+|..+|+|.+++..+
T Consensus 587 s~n~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~ 655 (1057)
T PLN02919 587 SNHNRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVN 655 (1057)
T ss_pred CCCCeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCC
Confidence 34589999999 8998877764 2478899999998765 899999999999998654
No 10
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.93 E-value=1.5e-05 Score=59.55 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=40.3
Q ss_pred CeEEEEeCC-CCe-EE--eEec--CCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750 56 DTVLTLDKS-TGL-LI--DAWG--KNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFG 111 (115)
Q Consensus 56 ~~I~vfdp~-~G~-~l--~~~G--~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f~ 111 (115)
+.|..|+.. ++. +. +.+. ......|-|+++|++|+|||++...++|++|+++|+.-
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~ 217 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLL 217 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEE
Confidence 678888652 232 22 2232 22335799999999999999999999999999999853
No 11
>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease. Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.
Probab=97.54 E-value=0.00035 Score=45.20 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=27.2
Q ss_pred EEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEe
Q psy15750 19 ARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLD 62 (115)
Q Consensus 19 ~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfd 62 (115)
++|+|.||.||+++++ .-.++........+.++++++|.
T Consensus 1 ~~V~g~SM~P~l~~GD-----~vlv~~~~~~~~~~~~Gdivv~~ 39 (90)
T TIGR02754 1 AKVTGVSMSPTLPPGD-----RIIVVPWLKIFRVPPIGNVVVVR 39 (90)
T ss_pred CEeeCCCccCccCCCC-----EEEEEEccccCCCCCCCeEEEEe
Confidence 4799999999999986 33444432334555568888884
No 12
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.33 E-value=0.0011 Score=49.57 Aligned_cols=50 Identities=14% Similarity=0.283 Sum_probs=41.0
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCCC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTY 108 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G 108 (115)
+.+..+++ +|+..... ..+..|.||+++++|+ +||+|...++|++|+.+.
T Consensus 115 g~v~~~~~-~~~~~~~~--~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~ 165 (246)
T PF08450_consen 115 GSVYRIDP-DGKVTVVA--DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA 165 (246)
T ss_dssp EEEEEEET-TSEEEEEE--EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred cceEEECC-CCeEEEEe--cCcccccceEECCcchheeecccccceeEEEeccc
Confidence 78999999 67754332 2488999999999885 899999999999999863
No 13
>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa
Probab=97.09 E-value=0.0018 Score=41.19 Aligned_cols=41 Identities=20% Similarity=0.109 Sum_probs=31.8
Q ss_pred EEEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeC
Q psy15750 18 VARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDK 63 (115)
Q Consensus 18 ~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp 63 (115)
+.+|+|.||.||++.++ +...++.....+.++.+++++|..
T Consensus 2 ~~~v~g~SM~P~i~~gd-----~v~v~~~~~~~~~~~~GDiv~~~~ 42 (85)
T cd06530 2 PVVVPGGSMEPTLQPGD-----LVLVNKLSYGFREPKRGDVVVFKS 42 (85)
T ss_pred eeEEcCCCCcCcccCCC-----EEEEEEeecccCCCCCCCEEEEeC
Confidence 57899999999999987 555555333345788899999976
No 14
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.82 E-value=0.0054 Score=47.36 Aligned_cols=47 Identities=17% Similarity=0.417 Sum_probs=29.7
Q ss_pred CeEEEEeCCCCeEEeEec--C------CCccCceeEEEccCCCEEEEeCCCCEEEEe
Q psy15750 56 DTVLTLDKSTGLLIDAWG--K------NKFYMPHGCTVDNKGFIWLTDVALHQVFKT 104 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G--~------g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f 104 (115)
..++++|+ +|+++..+- + ..|.-|-|||.|++|++||+...| ..|+|
T Consensus 193 ~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN-lfy~f 247 (248)
T PF06977_consen 193 RLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN-LFYRF 247 (248)
T ss_dssp TEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT-EEEEE
T ss_pred CeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc-eEEEe
Confidence 68888998 899876654 2 357789999999999999997654 67776
No 15
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=96.69 E-value=0.0072 Score=39.96 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=39.8
Q ss_pred CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCCC
Q psy15750 55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTY 108 (115)
Q Consensus 55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G 108 (115)
.+.++.+||++++... -...+.+|.|+++.+|+. +.|+....+||.||=-+|
T Consensus 36 ~GRll~ydp~t~~~~v--l~~~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTV--LLDGLYFPNGVALSPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp -EEEEEEETTTTEEEE--EEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred CcCEEEEECCCCeEEE--ehhCCCccCeEEEcCCCCEEEEEeccCceEEEEEEeC
Confidence 4889999997776411 112488999999998886 889999999999987665
No 16
>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification. ; InterPro: IPR019759 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ].; PDB: 1KCA_H 3BDN_A 1F39_A 1JHH_A 1JHE_B 3JSP_A 1JHF_B 1JHC_A 3JSO_B 1B12_D ....
Probab=96.65 E-value=0.0021 Score=39.14 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=25.5
Q ss_pred EeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCe
Q psy15750 20 RVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGL 67 (115)
Q Consensus 20 ~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~ 67 (115)
+|+|-||.|+++.++ ....++ ...+..++++++.. +++
T Consensus 1 ~V~GdSM~P~i~~Gd-----~v~v~~----~~~~~~gdivv~~~-~~~ 38 (70)
T PF00717_consen 1 RVEGDSMEPTIKDGD-----IVLVDP----SSEPKDGDIVVVKI-DGD 38 (70)
T ss_dssp EEESSTTGGTSSTTE-----EEEEEE----TS---TTSEEEEEE-TTE
T ss_pred CeECcCcccCeeCCC-----EEEEEE----cCCCccCeEEEEEE-CCc
Confidence 689999999999887 333333 22677788888866 455
No 17
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=96.56 E-value=0.0044 Score=44.87 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=29.2
Q ss_pred EeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeC
Q psy15750 20 RVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDK 63 (115)
Q Consensus 20 ~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp 63 (115)
-|.|.||+||++.++ +...++ ...+.+++++|++|..
T Consensus 35 ~V~g~SM~Ptl~~GD-----~vlv~~--~~~~~~~~GDIVvf~~ 71 (158)
T TIGR02228 35 VVLSGSMEPTFNTGD-----LILVTG--ADPNDIQVGDVITYKS 71 (158)
T ss_pred EEcCCCCcCCccCCC-----EEEEEe--cccCCCCCCCEEEEEE
Confidence 399999999999996 444554 3446889999999965
No 18
>KOG3567|consensus
Probab=96.44 E-value=0.00066 Score=56.63 Aligned_cols=58 Identities=17% Similarity=0.051 Sum_probs=46.7
Q ss_pred CCCCCCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCC
Q psy15750 49 TKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT 107 (115)
Q Consensus 49 ~~~~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~ 107 (115)
.+++|+...+.-..++.|+.- .|+...|++|||.++|.+|+.|+||++.|+++|+.|.
T Consensus 140 ar~ap~l~lp~~V~f~vG~~q-~iky~vlqvhyg~t~df~~~~d~TgV~mH~t~kp~pk 197 (501)
T KOG3567|consen 140 ARGAPNLKLPKGVGFRVGGEQ-GIKYFVLQVHYGLTIDFDGNYDVTGVGMHQTEKPQPK 197 (501)
T ss_pred hhCCCcccchhhhcccccccc-CcceeEEEeccccccCCCCCcccccceeeeeccCCch
Confidence 355666666655555456554 7888899999999999999999999999999998775
No 19
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.28 E-value=0.012 Score=46.95 Aligned_cols=54 Identities=26% Similarity=0.317 Sum_probs=41.4
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCC-CCCCC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPY-TYNFG 111 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~-~G~f~ 111 (115)
+.|=.+||++|+..+. --+.=..||||.+++||+.||+|.++ -|-++++ .+++.
T Consensus 83 gaiGhLdP~tGev~~y-pLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 83 GAIGHLDPATGEVETY-PLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred ccceecCCCCCceEEE-ecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE
Confidence 6677889988887543 33344589999999999999999997 7777777 34443
No 20
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=96.17 E-value=0.012 Score=32.80 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=21.4
Q ss_pred eEecCC-CccCceeEEEccCCCEEEEeCCC
Q psy15750 70 DAWGKN-KFYMPHGCTVDNKGFIWLTDVAL 98 (115)
Q Consensus 70 ~~~G~g-~f~~P~Gi~vd~~g~I~VtD~~~ 98 (115)
+.+|.. .-..|++|++|++|||||+...+
T Consensus 4 ~~lG~~~~~~~~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 4 TQLGGPGAQDYGNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEeCCCCCceeEEEEEECCCCCEEEEEeec
Confidence 455533 33479999999999999996544
No 21
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=96.16 E-value=0.022 Score=37.38 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=37.4
Q ss_pred CCeEEEEeCCCCeEEeEecCCCccCceeEEEccC-CCEEEEeCCCCEEEEeCCC
Q psy15750 55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNK-GFIWLTDVALHQVFKTPYT 107 (115)
Q Consensus 55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~-g~I~VtD~~~h~V~~f~~~ 107 (115)
.+.|+-+|+ ++. +.-...+..|.||+++++ ..|||++...|.|++|...
T Consensus 35 ~~~Vvyyd~--~~~--~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 35 WGNVVYYDG--KEV--KVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CceEEEEeC--CEe--EEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 367888888 332 223346889999999974 7889999999999988653
No 22
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.04 E-value=0.027 Score=30.50 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=30.7
Q ss_pred CccCceeEEEcc-CCCEEEEeCCCCEEEEeCCCCCC
Q psy15750 76 KFYMPHGCTVDN-KGFIWLTDVALHQVFKTPYTYNF 110 (115)
Q Consensus 76 ~f~~P~Gi~vd~-~g~I~VtD~~~h~V~~f~~~G~f 110 (115)
.+..|.|+++|+ ++.+|-+|...+.+.+.+.+|..
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~ 42 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence 577899999995 57899999999999999998864
No 23
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.80 E-value=0.031 Score=44.73 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=37.3
Q ss_pred CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEE
Q psy15750 55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVF 102 (115)
Q Consensus 55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~ 102 (115)
.+.|+.|+| +|..+..+..+ +..|.|++.|++|++|++|+..+...
T Consensus 163 ~g~i~r~~p-dg~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~~~~~ 208 (367)
T TIGR02604 163 GGGLFRYNP-DGGKLRVVAHG-FQNPYGHSVDSWGDVFFCDNDDPPLC 208 (367)
T ss_pred CceEEEEec-CCCeEEEEecC-cCCCccceECCCCCEEEEccCCCcee
Confidence 367999999 67666666655 88999999999999999999765444
No 24
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.48 E-value=0.033 Score=44.25 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=27.9
Q ss_pred cCceeEEEccCCCEEEEeCCC-CEEEEeCCCCCC
Q psy15750 78 YMPHGCTVDNKGFIWLTDVAL-HQVFKTPYTYNF 110 (115)
Q Consensus 78 ~~P~Gi~vd~~g~I~VtD~~~-h~V~~f~~~G~f 110 (115)
.+|-|+++|.+|++|++-... ..|.+|+|+|+.
T Consensus 213 G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l 246 (307)
T COG3386 213 GLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKL 246 (307)
T ss_pred CCCCceEEeCCCCEEEecccCCceEEEECCCCcE
Confidence 589999999999999764444 499999999875
No 25
>KOG4499|consensus
Probab=95.28 E-value=0.049 Score=42.72 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=30.0
Q ss_pred CccCceeEEEccCCCEEEEeCCCCEEEEeCCC-CC
Q psy15750 76 KFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT-YN 109 (115)
Q Consensus 76 ~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~-G~ 109 (115)
.-..|-|+++|.+|++||+=....+|+++||. |+
T Consensus 210 e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 210 ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK 244 (310)
T ss_pred CCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc
Confidence 34589999999999999999999999999985 44
No 26
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=95.16 E-value=0.039 Score=44.47 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=39.2
Q ss_pred EeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCC-CCCCcc
Q psy15750 61 LDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT-YNFGDM 113 (115)
Q Consensus 61 fdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~-G~f~~~ 113 (115)
.|-++++++.+ -+.|||+-.- .+|.+|+.|.+.+++.+.|++ |++.++
T Consensus 190 idv~s~evl~~----GLsmPhSPRW-hdgrLwvldsgtGev~~vD~~~G~~e~V 238 (335)
T TIGR03032 190 IDIPSGEVVAS----GLSMPHSPRW-YQGKLWLLNSGRGELGYVDPQAGKFQPV 238 (335)
T ss_pred EEeCCCCEEEc----CccCCcCCcE-eCCeEEEEECCCCEEEEEcCCCCcEEEE
Confidence 44446666665 5889998877 789999999999999999997 988765
No 27
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.05 E-value=0.1 Score=41.48 Aligned_cols=54 Identities=11% Similarity=0.343 Sum_probs=44.0
Q ss_pred CCCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCC-CEEEEeCCCCEEEEeCCC
Q psy15750 52 PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKG-FIWLTDVALHQVFKTPYT 107 (115)
Q Consensus 52 ~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g-~I~VtD~~~h~V~~f~~~ 107 (115)
+-..+.+..+|| .|...+-+ .+.+..|.|++.++|| .+|++|....++++|+-+
T Consensus 139 ~~~~G~lyr~~p-~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 139 ERPTGSLYRVDP-DGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred cCCcceEEEEcC-CCCEEEee-cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 344568999999 77776553 3458899999999999 889999999999999776
No 28
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.17 Score=40.81 Aligned_cols=53 Identities=23% Similarity=0.269 Sum_probs=43.3
Q ss_pred CCCeEEEEeCCCCeEEeEecC-CCccCceeEEEccCCC-EEEEeCCCCEEEEeCCCCC
Q psy15750 54 SVDTVLTLDKSTGLLIDAWGK-NKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTYN 109 (115)
Q Consensus 54 ~~~~I~vfdp~~G~~l~~~G~-g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G~ 109 (115)
..+.+.++|+.++++..+ .. |. .|.|++++++|+ +||+|.....+..++.++.
T Consensus 138 ~~~~vsvid~~t~~~~~~-~~vG~--~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~ 192 (381)
T COG3391 138 GNNTVSVIDAATNKVTAT-IPVGN--TPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGN 192 (381)
T ss_pred CCceEEEEeCCCCeEEEE-EecCC--CcceEEECCCCCeEEEEecCCCeEEEEeCCCc
Confidence 358899999967777766 43 33 789999999998 9999999999999987765
No 29
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.41 E-value=0.84 Score=36.02 Aligned_cols=92 Identities=12% Similarity=0.045 Sum_probs=54.6
Q ss_pred eeeEEEeeeeecCccCCCCc--ccceEEeecccccC--CCCCCCCCeEEEEe--CCCCeEEeE-ecCCCccCceeEEEcc
Q psy15750 15 IGYVARVDGTSMQPVCPSTY--MDTLYCSIEESESG--TKRPISVDTVLTLD--KSTGLLIDA-WGKNKFYMPHGCTVDN 87 (115)
Q Consensus 15 v~~~~~v~G~Sm~pt~~~~~--~D~~~~~~~~~~~~--~~~~i~~~~I~vfd--p~~G~~l~~-~G~g~f~~P~Gi~vd~ 87 (115)
-|.+..+...+.-|....+. .-.+..+-+++|.| +++ .+.|.+|+ +++|++..- ...-.-..|+++++++
T Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~---~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~ 301 (345)
T PF10282_consen 225 DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG---SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP 301 (345)
T ss_dssp TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT---TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T
T ss_pred CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc---CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC
Confidence 34666777777776643221 22233455666655 333 47888995 445665321 1111123599999998
Q ss_pred CCC-EEEEeCCCCEEEEeCCCCC
Q psy15750 88 KGF-IWLTDVALHQVFKTPYTYN 109 (115)
Q Consensus 88 ~g~-I~VtD~~~h~V~~f~~~G~ 109 (115)
+|+ +||++...++|..|+.+.+
T Consensus 302 ~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 302 DGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEETT
T ss_pred CCCEEEEEecCCCeEEEEEEeCC
Confidence 876 7889999999988865433
No 30
>cd06462 Peptidase_S24_S26 The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families. The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the tr
Probab=94.30 E-value=0.19 Score=30.96 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=28.7
Q ss_pred EEEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCC-eEE
Q psy15750 18 VARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTG-LLI 69 (115)
Q Consensus 18 ~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G-~~l 69 (115)
..+|+|-||.|+++.++ ....+. ....+..+++.++.. ++ +..
T Consensus 2 ~~~v~g~SM~P~i~~gd-----~v~i~~---~~~~~~~G~iv~~~~-~~~~~~ 45 (84)
T cd06462 2 ALRVEGDSMEPTIPDGD-----LVLVDK---SSYEPKRGDIVVFRL-PGGELT 45 (84)
T ss_pred eeEEcCCCccCcccCCC-----EEEEEe---cCCCCcCCEEEEEEc-CCCcEE
Confidence 46899999999999887 333332 111466788888876 45 443
No 31
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.26 E-value=0.091 Score=41.13 Aligned_cols=66 Identities=18% Similarity=0.441 Sum_probs=41.0
Q ss_pred EEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEE----eE--ecCCCccCceeEEEcc--CCC
Q psy15750 19 ARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLI----DA--WGKNKFYMPHGCTVDN--KGF 90 (115)
Q Consensus 19 ~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l----~~--~G~g~f~~P~Gi~vd~--~g~ 90 (115)
.+..|.+|+++.+.+-.| +.++.|..+++ ++.+. .. --.+.+..|.++++++ +|.
T Consensus 186 ~~s~g~~~D~~G~ly~~~----------------~~~~aI~~w~~-~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~ 248 (287)
T PF03022_consen 186 SQSDGMAIDPNGNLYFTD----------------VEQNAIGCWDP-DGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY 248 (287)
T ss_dssp -SECEEEEETTTEEEEEE----------------CCCTEEEEEET-TTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-
T ss_pred CCCceEEECCCCcEEEec----------------CCCCeEEEEeC-CCCcCccchheeEEcCceeeccceeeeccccCce
Confidence 366778888866665433 34489999998 77321 11 1234599999999999 999
Q ss_pred EEEEeCCCCEE
Q psy15750 91 IWLTDVALHQV 101 (115)
Q Consensus 91 I~VtD~~~h~V 101 (115)
+||.-+..|+.
T Consensus 249 L~v~snrl~~~ 259 (287)
T PF03022_consen 249 LWVLSNRLQRF 259 (287)
T ss_dssp EEEEE-S--SS
T ss_pred EEEEECcchHh
Confidence 99986666643
No 32
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=0.19 Score=40.52 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=39.8
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCC-CEEEEeC--CCCEEEEeCCCCC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKG-FIWLTDV--ALHQVFKTPYTYN 109 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g-~I~VtD~--~~h~V~~f~~~G~ 109 (115)
+.|.++|..+-+.......|. +|+++++++++ ++||+|. .++.+.++|+...
T Consensus 96 ~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 96 NTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred CeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence 778888853445555555555 99999999876 9999999 4799998888754
No 33
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.15 E-value=0.2 Score=40.32 Aligned_cols=55 Identities=11% Similarity=0.116 Sum_probs=48.1
Q ss_pred CCeEEEEeCCCCeEEeEecC-CCccCceeEEEcc------CCCEEEEeCCCCEEEEeCCC-CCC
Q psy15750 55 VDTVLTLDKSTGLLIDAWGK-NKFYMPHGCTVDN------KGFIWLTDVALHQVFKTPYT-YNF 110 (115)
Q Consensus 55 ~~~I~vfdp~~G~~l~~~G~-g~f~~P~Gi~vd~------~g~I~VtD~~~h~V~~f~~~-G~f 110 (115)
.+-|-+||+ +|++++++-. +.+..|.|+++-| .|.|.|...+..+|-.||+. |+|
T Consensus 221 ~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 221 LGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred cceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCce
Confidence 468999999 9999999864 6799999999965 58999999999999999985 665
No 34
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.92 E-value=0.13 Score=40.55 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=29.8
Q ss_pred CceeEEEccCCCEEEEeCCC------CEEEEeCCCCCC
Q psy15750 79 MPHGCTVDNKGFIWLTDVAL------HQVFKTPYTYNF 110 (115)
Q Consensus 79 ~P~Gi~vd~~g~I~VtD~~~------h~V~~f~~~G~f 110 (115)
=|.||++.++|.+||++.+. |+|++|+++|+.
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~ 123 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRV 123 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcc
Confidence 57799999999999999999 999999999887
No 35
>COG2932 Predicted transcriptional regulator [Transcription]
Probab=92.29 E-value=1.2 Score=32.96 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=28.2
Q ss_pred eEEEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeE
Q psy15750 17 YVARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLL 68 (115)
Q Consensus 17 ~~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~ 68 (115)
...+|+|-||.|+++.++ ...++. ....++.+.++++.- .|++
T Consensus 124 ~~i~V~GDSMeP~~~~Gd-----~ilVd~---~~~~~~gd~v~v~~~-g~~~ 166 (214)
T COG2932 124 FALRVTGDSMEPTYEDGD-----TLLVDP---GVNTRRGDRVYVETD-GGEL 166 (214)
T ss_pred EEEEEeCCcccccccCCC-----EEEECC---CCceeeCCEEEEEEe-CCeE
Confidence 678999999999999998 333333 333444455666654 4443
No 36
>cd06529 S24_LexA-like Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the
Probab=92.28 E-value=0.62 Score=28.61 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=26.8
Q ss_pred EEEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCe
Q psy15750 18 VARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGL 67 (115)
Q Consensus 18 ~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~ 67 (115)
..+++|.||.|+++.++ .+. .+. ...+..+++.++.- +++
T Consensus 2 ~~~v~g~sM~p~i~~gd--~li---i~~----~~~~~~g~i~~~~~-~~~ 41 (81)
T cd06529 2 ALRVKGDSMEPTIPDGD--LVL---VDP----SDTPRDGDIVVARL-DGE 41 (81)
T ss_pred EEEEECCCcCCccCCCC--EEE---EcC----CCCCCCCCEEEEEE-CCE
Confidence 46899999999998886 333 332 22366777777765 443
No 37
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.19 E-value=0.24 Score=39.58 Aligned_cols=39 Identities=10% Similarity=0.246 Sum_probs=29.7
Q ss_pred CccCceeEEEccCCCEEEEeCC------------CCEEEEeCC---CCCCCccc
Q psy15750 76 KFYMPHGCTVDNKGFIWLTDVA------------LHQVFKTPY---TYNFGDMT 114 (115)
Q Consensus 76 ~f~~P~Gi~vd~~g~I~VtD~~------------~h~V~~f~~---~G~f~~~~ 114 (115)
.+..|.+|++|++|++||++.. ..+|++++. +|++...|
T Consensus 12 ~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~ 65 (367)
T TIGR02604 12 LLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSN 65 (367)
T ss_pred ccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeE
Confidence 5778999999999999999753 248887765 57765443
No 38
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=91.98 E-value=1.1 Score=34.57 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=38.9
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPY 106 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~ 106 (115)
+.|+.++. +|++++++--..|.=|.||+.-.+|.+.+++...+++++++.
T Consensus 44 ~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 44 GEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp TEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred CEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 77889998 999999976556888999999988988899988999987765
No 39
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.07 E-value=0.36 Score=37.78 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=29.2
Q ss_pred ceeEEEccCCCEEEEeCCCCEEEEeCCCCCCCc
Q psy15750 80 PHGCTVDNKGFIWLTDVALHQVFKTPYTYNFGD 112 (115)
Q Consensus 80 P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f~~ 112 (115)
--|+++|++|++|.+|...+.|.++++++.+.+
T Consensus 188 s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~ 220 (287)
T PF03022_consen 188 SDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTP 220 (287)
T ss_dssp ECEEEEETTTEEEEEECCCTEEEEEETTTSB-G
T ss_pred CceEEECCCCcEEEecCCCCeEEEEeCCCCcCc
Confidence 358999999999999999999999999996654
No 40
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.79 E-value=1.2 Score=35.76 Aligned_cols=31 Identities=10% Similarity=0.298 Sum_probs=23.5
Q ss_pred CccCceeEEEccCCCEEEEeCCCCEEEEeCCC
Q psy15750 76 KFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT 107 (115)
Q Consensus 76 ~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~ 107 (115)
.+.-|.|++.|.+|+|||+-.- .--|+|.++
T Consensus 282 dipqaEGiamDd~g~lYIvSEP-nlfy~F~~~ 312 (316)
T COG3204 282 DIPQAEGIAMDDDGNLYIVSEP-NLFYRFTPQ 312 (316)
T ss_pred cCCCcceeEECCCCCEEEEecC-CcceecccC
Confidence 4667899999999999998433 345677665
No 41
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.30 E-value=1.2 Score=37.42 Aligned_cols=52 Identities=19% Similarity=0.324 Sum_probs=38.0
Q ss_pred CCeEEEEeCCCCeE-------------EeEecCCCccCceeEEEccCCCEEEEeCCC---CEEEEeCCCCCC
Q psy15750 55 VDTVLTLDKSTGLL-------------IDAWGKNKFYMPHGCTVDNKGFIWLTDVAL---HQVFKTPYTYNF 110 (115)
Q Consensus 55 ~~~I~vfdp~~G~~-------------l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~---h~V~~f~~~G~f 110 (115)
.+.|+.+++ +|+. +-++| +.-|.|++.|++|.+|++|.+- .++-+..+-+++
T Consensus 198 ~GkILRin~-DGsiP~dNPf~~g~~~eIyA~G---~RNp~Gla~dp~G~Lw~~e~Gp~~~DEiN~I~~G~NY 265 (454)
T TIGR03606 198 MGKVLRLNL-DGSIPKDNPSINGVVSHIFTYG---HRNPQGLAFTPDGTLYASEQGPNSDDELNIIVKGGNY 265 (454)
T ss_pred ceEEEEEcC-CCCCCCCCCccCCCcceEEEEe---ccccceeEECCCCCEEEEecCCCCCcEEEEeccCCcC
Confidence 568999998 8863 34555 3479999999999999999884 455554444444
No 42
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=89.81 E-value=2.5 Score=30.87 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=37.7
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT 107 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~ 107 (115)
+.+.++|+++++.+..+-.+ ..|++++.+++|. +|++....+++..++.+
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~--~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVG--QRPRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred CEEEEEECCCCceEEEEECC--CCCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 68889998778877776422 2477889988886 57887777888888865
No 43
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=89.25 E-value=1.5 Score=31.59 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=40.1
Q ss_pred CCeEEEEeCCCCeEEeEecCCC-ccCceeEEEccCCCEEEEeCCCCEEEEeCC-CCCC
Q psy15750 55 VDTVLTLDKSTGLLIDAWGKNK-FYMPHGCTVDNKGFIWLTDVALHQVFKTPY-TYNF 110 (115)
Q Consensus 55 ~~~I~vfdp~~G~~l~~~G~g~-f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~-~G~f 110 (115)
++.|..+|+.+|+.+-+..-+. +.-+...++..++++|+.+ ..++++.+|. +|+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~l~~~d~~tG~~ 58 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS-GDGNLYALDAKTGKV 58 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE-TTSEEEEEETTTSEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc-CCCEEEEEECCCCCE
Confidence 4678999998999987775422 4444333666789999994 7888999986 6753
No 44
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=87.99 E-value=0.81 Score=36.10 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=27.1
Q ss_pred ccCceeEEEccCCC-EEEEeCCCCEEEEeCCCCCC
Q psy15750 77 FYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTYNF 110 (115)
Q Consensus 77 f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G~f 110 (115)
-..||.+..+++|+ +||+|.+..+|+.|+.+.+-
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 45899999999875 89999999999988876544
No 45
>KOG1214|consensus
Probab=87.95 E-value=0.66 Score=42.07 Aligned_cols=54 Identities=15% Similarity=0.066 Sum_probs=36.5
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCCCCEEE--EeCCCCCC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVALHQVF--KTPYTYNF 110 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~h~V~--~f~~~G~f 110 (115)
++|-|-.. +|+..+..-...+.-|.+|.+|+ .||+|-||+.+..-+ .-+.||+-
T Consensus 1090 D~IevA~L-dG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~N 1146 (1289)
T KOG1214|consen 1090 DKIEVALL-DGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGEN 1146 (1289)
T ss_pred chhheeec-CCceeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCcc
Confidence 34444444 57666655555688999999995 899999999854333 44455553
No 46
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=86.74 E-value=3.6 Score=33.41 Aligned_cols=50 Identities=8% Similarity=0.070 Sum_probs=37.9
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC--EEEEeCCCCEEEEeCCC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF--IWLTDVALHQVFKTPYT 107 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~--I~VtD~~~h~V~~f~~~ 107 (115)
+.|-++|.++++.+.++--|. .|+++++.+||. +|+++.....|..+|..
T Consensus 279 ~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 279 RFLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred CEEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 579999998899888755333 799999998875 67777666667766653
No 47
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.05 E-value=2 Score=34.55 Aligned_cols=55 Identities=13% Similarity=0.139 Sum_probs=39.8
Q ss_pred CCCCeEEEEeCCCCeEEeEec-CCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCC
Q psy15750 53 ISVDTVLTLDKSTGLLIDAWG-KNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTY 108 (115)
Q Consensus 53 i~~~~I~vfdp~~G~~l~~~G-~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G 108 (115)
...+.+..||| .-+.-.+|- .+.=.-|-.+.||..|.||.+|.+...+.+||++-
T Consensus 251 wg~g~l~rfdP-s~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 251 WGTGSLHRFDP-SVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred cCCceeeEeCc-ccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCccc
Confidence 33478888998 444333333 12233566789999999999999999999999863
No 48
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=85.85 E-value=1.8 Score=24.21 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=25.7
Q ss_pred eEEEEeCCCCeEEeEecCCCccCceeEEEcc
Q psy15750 57 TVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN 87 (115)
Q Consensus 57 ~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~ 87 (115)
.|..-+. +|+-.+......+..|.|||||+
T Consensus 13 ~I~~a~~-dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 13 SIERANL-DGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEET-TSTSEEEEEESSTSSEEEEEEET
T ss_pred EEEEEEC-CCCCeEEEEECCCCCcCEEEECC
Confidence 7888888 88887788888899999999984
No 49
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=85.67 E-value=3.5 Score=33.49 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=39.5
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCC-CEEEEeC---------CCCEEEEeCCC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKG-FIWLTDV---------ALHQVFKTPYT 107 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g-~I~VtD~---------~~h~V~~f~~~ 107 (115)
+.|.|+|.++++++..+--|. .|||+ +.+|| .+||+.. ..+.|.++|..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 789999998899887766553 79997 88765 6899988 77888888765
No 50
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=85.64 E-value=1.1 Score=22.18 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=11.4
Q ss_pred eeEEEccCCCEEEE
Q psy15750 81 HGCTVDNKGFIWLT 94 (115)
Q Consensus 81 ~Gi~vd~~g~I~Vt 94 (115)
..+..|++|+|||.
T Consensus 8 ~~i~~D~~G~lWig 21 (24)
T PF07494_consen 8 YSIYEDSDGNLWIG 21 (24)
T ss_dssp EEEEE-TTSCEEEE
T ss_pred EEEEEcCCcCEEEE
Confidence 47889999999997
No 51
>KOG3342|consensus
Probab=85.47 E-value=2.2 Score=31.36 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=36.3
Q ss_pred EEecceeeEEEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCe
Q psy15750 10 TFCDSIGYVARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGL 67 (115)
Q Consensus 10 ~~~d~v~~~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~ 67 (115)
+++++-..+.-|=..||+|.++-++ .....+ ++..+++-++|.||.- +|+
T Consensus 42 vvt~seSPiVVVLSgSMePaF~RGD-----lLfL~N--~~~~p~~vGdivVf~v-egR 91 (180)
T KOG3342|consen 42 VVTGSESPIVVVLSGSMEPAFHRGD-----LLFLTN--RNEDPIRVGDIVVFKV-EGR 91 (180)
T ss_pred eeeCCCCCEEEEEcCCcCccccccc-----EEEEec--CCCCcceeccEEEEEE-CCc
Confidence 4455555667888899999999987 222222 4667888999999977 555
No 52
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=85.37 E-value=19 Score=29.45 Aligned_cols=98 Identities=11% Similarity=0.110 Sum_probs=62.2
Q ss_pred cceeeEEEeeeeecCccCCCCc--ccceEEeecccccC--CCCCCCCCeEEEE--eCCCCeEEeEec--CCCccCceeEE
Q psy15750 13 DSIGYVARVDGTSMQPVCPSTY--MDTLYCSIEESESG--TKRPISVDTVLTL--DKSTGLLIDAWG--KNKFYMPHGCT 84 (115)
Q Consensus 13 d~v~~~~~v~G~Sm~pt~~~~~--~D~~~~~~~~~~~~--~~~~i~~~~I~vf--dp~~G~~l~~~G--~g~f~~P~Gi~ 84 (115)
...|.+..+.-.++-|+.-.+. .=+...+.+.+|+| +++- +.|.+| |+ +|..|...+ .-.-..|++..
T Consensus 222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~---dsI~~f~V~~-~~g~L~~~~~~~teg~~PR~F~ 297 (346)
T COG2706 222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH---DSIAVFSVDP-DGGKLELVGITPTEGQFPRDFN 297 (346)
T ss_pred CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC---CeEEEEEEcC-CCCEEEEEEEeccCCcCCccce
Confidence 3468888888888888874433 33344567777777 3332 466676 88 544444444 22344699999
Q ss_pred EccCCCE-EEEeCCCCEEEEeCCCCCCCccc
Q psy15750 85 VDNKGFI-WLTDVALHQVFKTPYTYNFGDMT 114 (115)
Q Consensus 85 vd~~g~I-~VtD~~~h~V~~f~~~G~f~~~~ 114 (115)
+++.|++ +++....+.+-+|..+.+-+.+|
T Consensus 298 i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 298 INPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred eCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 9977665 55566666677777766655544
No 53
>TIGR02771 TraF_Ti conjugative transfer signal peptidase TraF. This protein is found in apparent operons encoding elements of conjugative transfer systems. This family is homologous to a broader family of signal (leader) peptidases such as lepB. This family is present in both Ti-type and I-type conjugative systems.
Probab=85.06 E-value=0.87 Score=33.20 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=32.3
Q ss_pred CCCCCCCCeEEEEeCCCCeEE-------------------eEecCCCccCceeEEEc-cCCCEEEEeC
Q psy15750 49 TKRPISVDTVLTLDKSTGLLI-------------------DAWGKNKFYMPHGCTVD-NKGFIWLTDV 96 (115)
Q Consensus 49 ~~~~i~~~~I~vfdp~~G~~l-------------------~~~G~g~f~~P~Gi~vd-~~g~I~VtD~ 96 (115)
..++++++++++|.+ ..+-. ..+.|+...+| |..|. .++.+||++.
T Consensus 43 ~~~~~~rGDiVvf~~-p~~~~~~~~~~rg~l~~g~~p~~~~~~vKRViglp-GD~V~i~~~~v~INg~ 108 (171)
T TIGR02771 43 SSKPVERGDYVVFCP-PDNPQFEEARERGYLREGLCPGGFGPLLKRVLGLP-GDRVTVRADVVAINGQ 108 (171)
T ss_pred CCCCCCCCcEEEEeC-CCchhhhchhhcCcccccccCcCccceEEEEEEeC-CCEEEEECCEEEECCE
Confidence 356899999999986 33211 13456677788 88777 5778998863
No 54
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=84.69 E-value=2.9 Score=33.08 Aligned_cols=55 Identities=24% Similarity=0.423 Sum_probs=35.7
Q ss_pred CCCCCeEEEEeCCCCeE---------------EeEecCCCccCceeEEEccC-CCEEEEeCCC---CEEEEeCCCCCC
Q psy15750 52 PISVDTVLTLDKSTGLL---------------IDAWGKNKFYMPHGCTVDNK-GFIWLTDVAL---HQVFKTPYTYNF 110 (115)
Q Consensus 52 ~i~~~~I~vfdp~~G~~---------------l~~~G~g~f~~P~Gi~vd~~-g~I~VtD~~~---h~V~~f~~~G~f 110 (115)
.-.++.|+.+++ +|+. +-++| +.-|.|++.|+. |++|++|++. .++....+.+++
T Consensus 144 ~~~~G~ilri~~-dG~~p~dnP~~~~~~~~~~i~A~G---lRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nY 217 (331)
T PF07995_consen 144 NSLRGKILRIDP-DGSIPADNPFVGDDGADSEIYAYG---LRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNY 217 (331)
T ss_dssp TSSTTEEEEEET-TSSB-TTSTTTTSTTSTTTEEEE-----SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B-
T ss_pred ccccceEEEecc-cCcCCCCCccccCCCceEEEEEeC---CCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcC
Confidence 334789999998 8873 12222 557999999988 9999999874 455555554444
No 55
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=84.58 E-value=2.1 Score=25.78 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=23.4
Q ss_pred eeEEEccCCCEEEEeCC-------CCEEEEeCCCCCCC
Q psy15750 81 HGCTVDNKGFIWLTDVA-------LHQVFKTPYTYNFG 111 (115)
Q Consensus 81 ~Gi~vd~~g~I~VtD~~-------~h~V~~f~~~G~f~ 111 (115)
+.+++.+||.|.+.... ...+.+++++|...
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsLD 41 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSLD 41 (55)
T ss_pred EEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCcc
Confidence 57889999999988532 23466999999764
No 56
>KOG1520|consensus
Probab=83.79 E-value=2 Score=35.34 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=19.9
Q ss_pred CccCceeEEEccCCCEEEEeCCC
Q psy15750 76 KFYMPHGCTVDNKGFIWLTDVAL 98 (115)
Q Consensus 76 ~f~~P~Gi~vd~~g~I~VtD~~~ 98 (115)
.+.+..++.|+++|.||-||...
T Consensus 159 ~~kf~N~ldI~~~g~vyFTDSSs 181 (376)
T KOG1520|consen 159 PFKFLNDLDIDPEGVVYFTDSSS 181 (376)
T ss_pred eeeecCceeEcCCCeEEEecccc
Confidence 46677899999999999999874
No 57
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=83.29 E-value=1.9 Score=34.82 Aligned_cols=33 Identities=9% Similarity=0.080 Sum_probs=30.0
Q ss_pred CCccCceeEEEccCCCEEEEeCCCCEEEEeCCC
Q psy15750 75 NKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT 107 (115)
Q Consensus 75 g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~ 107 (115)
..+.-|.||+..+.+.+||+|++......|+-+
T Consensus 20 p~L~N~WGia~~p~~~~WVadngT~~~TlYdg~ 52 (336)
T TIGR03118 20 PGLRNAWGLSYRPGGPFWVANTGTGTATLYVGN 52 (336)
T ss_pred ccccccceeEecCCCCEEEecCCcceEEeecCC
Confidence 357789999999999999999999999999887
No 58
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=83.10 E-value=9.2 Score=27.80 Aligned_cols=52 Identities=12% Similarity=-0.092 Sum_probs=34.0
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCE-EEEeCCCCEEEEeCCCCC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFI-WLTDVALHQVFKTPYTYN 109 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I-~VtD~~~h~V~~f~~~G~ 109 (115)
+.+.++|.++++++...-.+ ..|.+++..++|.. |++......|.++|.+..
T Consensus 229 ~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 229 NRVAVVDAKTYEVLDYLLVG--QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred CeEEEEECCCCcEEEEEEeC--CCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 45667776566665443222 25778899888864 556555778888888753
No 59
>PRK10276 DNA polymerase V subunit UmuD; Provisional
Probab=81.71 E-value=6.4 Score=27.29 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=28.7
Q ss_pred eEEEeeeeecC-ccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEE
Q psy15750 17 YVARVDGTSMQ-PVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLI 69 (115)
Q Consensus 17 ~~~~v~G~Sm~-pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l 69 (115)
...+|+|-||. |+++.++ ....+. ...++.++++++.. +|+..
T Consensus 52 f~l~V~GdSM~~~~I~~GD-----~liVd~----~~~~~~Gdivv~~~-~g~~~ 95 (139)
T PRK10276 52 YFVKASGDSMIDAGISDGD-----LLIVDS----AITASHGDIVIAAV-DGEFT 95 (139)
T ss_pred EEEEEecCCCCCCCCCCCC-----EEEEEC----CCCCCCCCEEEEEE-CCEEE
Confidence 45889999997 5788876 333332 22356688888876 67654
No 60
>KOG4659|consensus
Probab=81.56 E-value=2.8 Score=39.86 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=25.4
Q ss_pred CccCceeEEEccCCCEEEEeCCCCEEEEeCCCCC
Q psy15750 76 KFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYN 109 (115)
Q Consensus 76 ~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~ 109 (115)
++.+|+||++|++|++|.+|.-+ |-+-|.+|.
T Consensus 473 ~L~~PkGIa~dk~g~lYfaD~t~--IR~iD~~gi 504 (1899)
T KOG4659|consen 473 QLIFPKGIAFDKMGNLYFADGTR--IRVIDTTGI 504 (1899)
T ss_pred eeccCCceeEccCCcEEEecccE--EEEeccCce
Confidence 68899999999999999998654 445555553
No 61
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=80.92 E-value=2.6 Score=27.70 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=18.3
Q ss_pred eEEEccC-CCEEEEeCCC-----------------CEEEEeCCCCC
Q psy15750 82 GCTVDNK-GFIWLTDVAL-----------------HQVFKTPYTYN 109 (115)
Q Consensus 82 Gi~vd~~-g~I~VtD~~~-----------------h~V~~f~~~G~ 109 (115)
+++|+++ |.||.||... .++++|||..+
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~ 47 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTK 47 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTT
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCC
Confidence 6789987 9999999853 56777777654
No 62
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=80.91 E-value=1.5 Score=32.18 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=33.4
Q ss_pred CCCCCCCCCeEEEEeCCCCeE---------E---------eEecCCCccCceeEEEccCCCEEEEeCC
Q psy15750 48 GTKRPISVDTVLTLDKSTGLL---------I---------DAWGKNKFYMPHGCTVDNKGFIWLTDVA 97 (115)
Q Consensus 48 ~~~~~i~~~~I~vfdp~~G~~---------l---------~~~G~g~f~~P~Gi~vd~~g~I~VtD~~ 97 (115)
++.++++++++++|.+.+... + ..+.|+...+| |.+|.-.+.+||++..
T Consensus 46 ~~~~~~~rGDiVvf~~P~~~~~~~a~~r~yl~~g~~p~~~~~~iKRViglp-GD~V~i~~~v~iNg~~ 112 (176)
T PRK13838 46 ALDRPVAVGDLVFICPPETAAFREARERGYLRRGLCPGGFAPLIKTVAALA-GQRVEIGGSVSIDGRP 112 (176)
T ss_pred ccCCCCCCCcEEEEECCchhhhhhhhhcccccccccccCCCceEEEEEEeC-CcEEEECCEEEECCEE
Confidence 356899999999997522221 0 12446677788 8888755688888654
No 63
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=78.80 E-value=2 Score=33.99 Aligned_cols=28 Identities=14% Similarity=0.379 Sum_probs=22.2
Q ss_pred Ccc-CceeEEEccCCCEEEEeCCCCEEEE
Q psy15750 76 KFY-MPHGCTVDNKGFIWLTDVALHQVFK 103 (115)
Q Consensus 76 ~f~-~P~Gi~vd~~g~I~VtD~~~h~V~~ 103 (115)
.+. .|.++++++||.|||+|..+.+|+|
T Consensus 303 ~~~~r~~~v~~~pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 303 GFGGRPRDVAQGPDGALYVSDDSDGKIYR 331 (331)
T ss_dssp TSSS-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred cCCCCceEEEEcCCCeEEEEECCCCeEeC
Confidence 444 7899999999999999878888875
No 64
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=78.49 E-value=6.5 Score=33.53 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.6
Q ss_pred CCccCceeEEEccCCCEEEE-eCCCCE
Q psy15750 75 NKFYMPHGCTVDNKGFIWLT-DVALHQ 100 (115)
Q Consensus 75 g~f~~P~Gi~vd~~g~I~Vt-D~~~h~ 100 (115)
..|..|-+|++|++|++||. |.+.++
T Consensus 433 ~~f~sPDNL~~d~~G~LwI~eD~~~~~ 459 (524)
T PF05787_consen 433 NGFASPDNLAFDPDGNLWIQEDGGGSN 459 (524)
T ss_pred CCcCCCCceEECCCCCEEEEeCCCCCC
Confidence 45899999999999999987 877765
No 65
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=78.32 E-value=8.4 Score=31.13 Aligned_cols=89 Identities=20% Similarity=0.178 Sum_probs=52.5
Q ss_pred eeeEEEeeeeecCccCC--C-Ccc-cceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC
Q psy15750 15 IGYVARVDGTSMQPVCP--S-TYM-DTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF 90 (115)
Q Consensus 15 v~~~~~v~G~Sm~pt~~--~-~~~-D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~ 90 (115)
-++++-+++.+.+.... . +.. -.+.++.+++|.|=.+ +.+.|-++|..+++++.++-.|. .|+|+++.+||.
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~--rdg~vsviD~~~~~~v~~i~~G~--~~~~i~~s~DG~ 90 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN--RDGTVSVIDLATGKVVATIKVGG--NPRGIAVSPDGK 90 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE--TTSEEEEEETTSSSEEEEEE-SS--EEEEEEE--TTT
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc--CCCeEEEEECCcccEEEEEecCC--CcceEEEcCCCC
Confidence 45666666665553321 1 111 1122344455544322 23789999999999988865433 589999999886
Q ss_pred -EEEEeCCCCEEEEeCCC
Q psy15750 91 -IWLTDVALHQVFKTPYT 107 (115)
Q Consensus 91 -I~VtD~~~h~V~~f~~~ 107 (115)
+||+....+++-.+|.+
T Consensus 91 ~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp EEEEEEEETTEEEEEETT
T ss_pred EEEEEecCCCceeEeccc
Confidence 56777778888888754
No 66
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=77.11 E-value=11 Score=31.22 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=36.9
Q ss_pred eEEEEeCCCCe---EEeEecCC-CccCceeEEEccCCCEEEEeCC-CCEEEEeCCCC
Q psy15750 57 TVLTLDKSTGL---LIDAWGKN-KFYMPHGCTVDNKGFIWLTDVA-LHQVFKTPYTY 108 (115)
Q Consensus 57 ~I~vfdp~~G~---~l~~~G~g-~f~~P~Gi~vd~~g~I~VtD~~-~h~V~~f~~~G 108 (115)
.++..++ +|+ ++..+-.+ .-.-|.++++.+||.++|+|.. +.+++|-..++
T Consensus 343 ~~~~~~~-~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 343 PVLRLRP-DGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred eEEEecc-CCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCCCCeEEEecCCC
Confidence 4566677 777 44444432 2268999999999999999555 77999887665
No 67
>PRK12423 LexA repressor; Provisional
Probab=76.57 E-value=24 Score=25.97 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=29.4
Q ss_pred eEEEeeeeecC-ccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEE
Q psy15750 17 YVARVDGTSMQ-PVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLI 69 (115)
Q Consensus 17 ~~~~v~G~Sm~-pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l 69 (115)
...+|+|-||. |+++.++ ....+. ...+.+++|+++.- +|+..
T Consensus 115 f~l~V~GdSM~~~~i~~Gd-----~viv~~----~~~~~~Gdivv~~~-~~~~~ 158 (202)
T PRK12423 115 YLLQVQGDSMIDDGILDGD-----LVGVHR----SPEARDGQIVVARL-DGEVT 158 (202)
T ss_pred EEEEEecCcCCCCCcCCCC-----EEEEeC----CCcCCCCCEEEEEE-CCEEE
Confidence 46899999997 6888887 322322 24556688888876 67654
No 68
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=76.37 E-value=4.7 Score=21.39 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=15.7
Q ss_pred CCEEEEeCCCCEEEEeCCC
Q psy15750 89 GFIWLTDVALHQVFKTPYT 107 (115)
Q Consensus 89 g~I~VtD~~~h~V~~f~~~ 107 (115)
+.+||++.+.++|..+|..
T Consensus 4 ~~lyv~~~~~~~v~~id~~ 22 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTA 22 (42)
T ss_pred CEEEEEeCCCCEEEEEECC
Confidence 4589999889999988874
No 69
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=75.27 E-value=13 Score=28.51 Aligned_cols=29 Identities=17% Similarity=0.364 Sum_probs=22.3
Q ss_pred cCceeEEEccCC-CEEEEeCCCCEEEEeCC
Q psy15750 78 YMPHGCTVDNKG-FIWLTDVALHQVFKTPY 106 (115)
Q Consensus 78 ~~P~Gi~vd~~g-~I~VtD~~~h~V~~f~~ 106 (115)
..|++++++++| .+||+....+.|..|+.
T Consensus 274 ~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 274 TQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred ccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 379999999887 77888876776666643
No 70
>PRK00215 LexA repressor; Validated
Probab=72.86 E-value=13 Score=27.02 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=28.1
Q ss_pred eeEEEeeeeecC-ccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEE
Q psy15750 16 GYVARVDGTSMQ-PVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLI 69 (115)
Q Consensus 16 ~~~~~v~G~Sm~-pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l 69 (115)
....+|.|-||. |+++.++ ....+. ...++.++++++.. +|+..
T Consensus 118 ~~~~~V~GdSM~~~~i~~Gd-----~v~v~~----~~~~~~G~ivv~~~-~~~~~ 162 (205)
T PRK00215 118 DFLLRVRGDSMIDAGILDGD-----LVIVRK----QQTARNGQIVVALI-DDEAT 162 (205)
T ss_pred eEEEEEccCCCCCCCcCCCC-----EEEEeC----CCCCCCCCEEEEEE-CCEEE
Confidence 345889999995 6888887 333332 22345677777765 55543
No 71
>KOG1214|consensus
Probab=72.05 E-value=3.9 Score=37.33 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=33.4
Q ss_pred CCCccCceeEEEc-cCCCEEEEeCCCCEEEEeCCCCCCCc
Q psy15750 74 KNKFYMPHGCTVD-NKGFIWLTDVALHQVFKTPYTYNFGD 112 (115)
Q Consensus 74 ~g~f~~P~Gi~vd-~~g~I~VtD~~~h~V~~f~~~G~f~~ 112 (115)
...+..|.||||| ..-|+|-+|..+.+|-+-..+|++.-
T Consensus 1064 n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rk 1103 (1289)
T KOG1214|consen 1064 NSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERK 1103 (1289)
T ss_pred cccCCCccceeeeeccceeeeeccccchhheeecCCceee
Confidence 3468899999999 67899999999999988888888763
No 72
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=70.83 E-value=32 Score=27.03 Aligned_cols=50 Identities=16% Similarity=0.034 Sum_probs=32.1
Q ss_pred CCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCC
Q psy15750 54 SVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT 107 (115)
Q Consensus 54 ~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~ 107 (115)
+++..+++|+++-+.+.++-- -.-..|+|-| ..++|++| +..+++..||+
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y--~~EGWGLt~d-g~~Li~SD-GS~~L~~~dP~ 157 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPY--PGEGWGLTSD-GKRLIMSD-GSSRLYFLDPE 157 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE---SSS--EEEEC-SSCEEEE--SSSEEEEE-TT
T ss_pred cCCeEEEEccccceEEEEEec--CCcceEEEcC-CCEEEEEC-CccceEEECCc
Confidence 347788888866666555431 1256899976 45899997 58899999986
No 73
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.78 E-value=20 Score=27.87 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=32.8
Q ss_pred CCCeEEEEeCCCCeEEeEec-----------CCCccCceeEEEcc-CCCEEEEeCC
Q psy15750 54 SVDTVLTLDKSTGLLIDAWG-----------KNKFYMPHGCTVDN-KGFIWLTDVA 97 (115)
Q Consensus 54 ~~~~I~vfdp~~G~~l~~~G-----------~g~f~~P~Gi~vd~-~g~I~VtD~~ 97 (115)
...+|...+|.+|+++.-+- +..-..+.|||-|+ .+.+|+|...
T Consensus 194 ~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 194 QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred eecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 34789999999999865433 12455899999996 4599999755
No 74
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=69.08 E-value=6.1 Score=30.37 Aligned_cols=30 Identities=10% Similarity=0.192 Sum_probs=24.5
Q ss_pred cCceeEEEccCC-CEEEEeCCCCEEEEeCCC
Q psy15750 78 YMPHGCTVDNKG-FIWLTDVALHQVFKTPYT 107 (115)
Q Consensus 78 ~~P~Gi~vd~~g-~I~VtD~~~h~V~~f~~~ 107 (115)
..||+++++++| .+||++.+.++|..|+.+
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred CcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 358999999887 677999998988888664
No 75
>KOG0278|consensus
Probab=68.04 E-value=23 Score=28.26 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=37.3
Q ss_pred eEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEE
Q psy15750 57 TVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103 (115)
Q Consensus 57 ~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~ 103 (115)
.+..||..+|+-+..+.+|.|.--|.+.-.|+|.+|-+......+..
T Consensus 247 ~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 247 KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred EEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence 35567877888888888888988888999999999988777665553
No 76
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=65.90 E-value=11 Score=31.80 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=29.0
Q ss_pred CCccCceeEEEccCCCEEEEeCCCCEEEEeCCCC
Q psy15750 75 NKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTY 108 (115)
Q Consensus 75 g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G 108 (115)
..+..|.+++..++|++||+.....+|+++++++
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~ 60 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPET 60 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCC
Confidence 3588999999999999999988778898887654
No 77
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=65.36 E-value=42 Score=23.11 Aligned_cols=49 Identities=12% Similarity=-0.029 Sum_probs=26.4
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTP 105 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~ 105 (115)
+.|.+||..+++.+..+- ..-.....++..++++.+++-..++++..|+
T Consensus 241 ~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 241 GTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 444455443334333322 1112345677778878877766666776653
No 78
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=64.83 E-value=33 Score=23.96 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=35.4
Q ss_pred CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEE-eCCCCEEE
Q psy15750 55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLT-DVALHQVF 102 (115)
Q Consensus 55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~Vt-D~~~h~V~ 102 (115)
.....+.+-.+|.+..++-.+.+..|.-+.+..+|.||++ +...-+.+
T Consensus 59 ~~sf~I~kn~dG~~~Ft~~e~~~~ep~~l~~l~dgri~~ts~~~d~~~~ 107 (123)
T PF11763_consen 59 KSSFNIIKNNDGTYQFTFVESSFSEPLDLHTLSDGRIWFTSNEYDFSPY 107 (123)
T ss_pred cceEEEEecCCCcEEEEEcccCCCCcEEEEEecCCcEEEEcccccCCcc
Confidence 3444444334888888888888999999999999999998 44444443
No 79
>PF10502 Peptidase_S26: Signal peptidase, peptidase S26 ; InterPro: IPR019533 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a conserved region found in the S26A family of serine endopeptidases, which function in the processing of newly-synthesised secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal signal peptides as proteins are translocated across membranes. ; PDB: 3S04_B 1KN9_C 1B12_D 3IIQ_B 1T7D_A.
Probab=64.76 E-value=2.3 Score=29.74 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=0.5
Q ss_pred CCCCCeEEEEeCCCCeEE------------eEecCCCccCceeEEEc-cCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750 52 PISVDTVLTLDKSTGLLI------------DAWGKNKFYMPHGCTVD-NKGFIWLTDVALHQVFKTPYTYNF 110 (115)
Q Consensus 52 ~i~~~~I~vfdp~~G~~l------------~~~G~g~f~~P~Gi~vd-~~g~I~VtD~~~h~V~~f~~~G~f 110 (115)
.++++++++|.+ ..+.. ..+.|+...+| |..+. .++.++|++...-+++..+..|+.
T Consensus 21 ~~~rGd~V~f~~-p~~~~~~~~~~gy~~~~~~~iKrV~a~p-GD~V~v~~~~v~iNG~~~~~~~~~d~~g~~ 90 (138)
T PF10502_consen 21 KIERGDLVVFCP-PAEVAFFAAERGYLPEGQPLIKRVAAVP-GDTVEVTDGGVYINGRPVGEPLATDSDGRP 90 (138)
T ss_dssp ----------------------------------------------------------------------S-
T ss_pred cccccccccccc-cccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 378899999977 44321 13346677788 88887 677799988666666666665553
No 80
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=64.61 E-value=34 Score=23.59 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=30.2
Q ss_pred CeEEEEeCCCCeEEeEe-cCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCC
Q psy15750 56 DTVLTLDKSTGLLIDAW-GKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT 107 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~-G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~ 107 (115)
+.|.+||..+++.+..+ +. -.....++.++++.++++.....+++.|+.+
T Consensus 199 ~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred CcEEEEECCCCceecchhhc--CCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 45666666445555444 21 1245567777878888876556677776654
No 81
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=64.40 E-value=27 Score=25.25 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=29.9
Q ss_pred eeEEEeeeeecC-ccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeE
Q psy15750 16 GYVARVDGTSMQ-PVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDA 71 (115)
Q Consensus 16 ~~~~~v~G~Sm~-pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~ 71 (115)
....+|.|-||. |.++.++ .+ ..+. ...+++++++++-- +|+...+
T Consensus 111 ~f~~~V~GdSM~~~~i~~Gd--~v---~v~~----~~~~~~G~ivvv~~-~~~~~vK 157 (199)
T TIGR00498 111 VFLLKVMGDSMVDAGICDGD--LL---IVRS----QKDARNGEIVAAMI-DGEVTVK 157 (199)
T ss_pred EEEEEecCCCCCCCCCCCCC--EE---EEec----CCCCCCCCEEEEEE-CCEEEEE
Confidence 356899999996 4677776 22 2222 23566788888876 6765433
No 82
>KOG4378|consensus
Probab=63.20 E-value=24 Score=30.66 Aligned_cols=33 Identities=6% Similarity=-0.011 Sum_probs=28.9
Q ss_pred EEEccCCCEEEEeCCCCEEEEeCCCCCCCcccC
Q psy15750 83 CTVDNKGFIWLTDVALHQVFKTPYTYNFGDMTV 115 (115)
Q Consensus 83 i~vd~~g~I~VtD~~~h~V~~f~~~G~f~~~~~ 115 (115)
++..++|.+.+..+.+.+++.||..+.-.|++|
T Consensus 256 vaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 256 VAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV 288 (673)
T ss_pred eeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence 344589999999999999999999999988875
No 83
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=61.77 E-value=7.5 Score=33.86 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=19.8
Q ss_pred CCccCceeEEEccCCCEEEE-eCC
Q psy15750 75 NKFYMPHGCTVDNKGFIWLT-DVA 97 (115)
Q Consensus 75 g~f~~P~Gi~vd~~g~I~Vt-D~~ 97 (115)
+.|.+|-++++|+.|++||. |-.
T Consensus 497 ~~f~~PDnl~fD~~GrLWi~TDg~ 520 (616)
T COG3211 497 NWFNSPDNLAFDPWGRLWIQTDGS 520 (616)
T ss_pred ccccCCCceEECCCCCEEEEecCC
Confidence 35889999999999999987 554
No 84
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=60.51 E-value=36 Score=26.75 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=39.0
Q ss_pred CCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCC
Q psy15750 54 SVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT 107 (115)
Q Consensus 54 ~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~ 107 (115)
.+..|..+|+++|+++.+.--..-....|+++- ++.||.=-+..+..++||++
T Consensus 66 G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred CcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccc
Confidence 346788899988998766443333345599995 67899888999999999986
No 85
>KOG4659|consensus
Probab=60.40 E-value=5.7 Score=37.93 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=25.1
Q ss_pred CccCceeEEEccCCCEEEEeCCCCEEEE
Q psy15750 76 KFYMPHGCTVDNKGFIWLTDVALHQVFK 103 (115)
Q Consensus 76 ~f~~P~Gi~vd~~g~I~VtD~~~h~V~~ 103 (115)
.|..|..+||.|+|+|||+|.+|-+|.+
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~rIr~ 687 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNSRIRK 687 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCchhhhh
Confidence 5889999999999999999999977763
No 86
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=60.19 E-value=9.1 Score=29.57 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=33.5
Q ss_pred CCCeEEEEeCCCCeEEeEecCCCccCceeEEEc-cCCCEEEEeCCCCEEEEeCCC-CCCCccc
Q psy15750 54 SVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVD-NKGFIWLTDVALHQVFKTPYT-YNFGDMT 114 (115)
Q Consensus 54 ~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd-~~g~I~VtD~~~h~V~~f~~~-G~f~~~~ 114 (115)
+.+.|++||. ..+|.-++.+|+|.+.+ .+++.-=.|.-.|.+ .||++ +++.+++
T Consensus 7 ~~~~v~~~d~------t~~g~s~~~~~~~~c~~~~~~~~~~~d~~a~s~-~yD~~tn~~rpl~ 62 (243)
T PF07250_consen 7 HNNKVIMFDR------TNFGPSNISLPDGRCRDNPEDNALKFDGPAHSV-EYDPNTNTFRPLT 62 (243)
T ss_pred cCCEEEEEeC------CCcccccccCCCCccccCccccccccCceEEEE-EEecCCCcEEecc
Confidence 3478999998 56888899999999876 333332223333422 44443 5555544
No 87
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=58.56 E-value=88 Score=24.60 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=40.8
Q ss_pred CCCCCCCCeEEEEeCCCCeE--EeEec--CCCccCce--eEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750 49 TKRPISVDTVLTLDKSTGLL--IDAWG--KNKFYMPH--GCTVDNKGFIWLTDVALHQVFKTPYTYNF 110 (115)
Q Consensus 49 ~~~~i~~~~I~vfdp~~G~~--l~~~G--~g~f~~P~--Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f 110 (115)
......++.++.+|+.+.+. ++.+- ...+..+. ....-++||+.|+....-++.-|+++|+.
T Consensus 225 ~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~~G~v 292 (299)
T PF14269_consen 225 NGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNNGRISEFTPDGEV 292 (299)
T ss_pred CCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCCceEEEECCCCCE
Confidence 55677788899999854432 23222 22222211 23334789999999899999999999974
No 88
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=58.49 E-value=37 Score=26.81 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=32.9
Q ss_pred CCeEEEEeCCCCeEEeEec----CCCccCceeEEEccCCCEEEEeCCCCEEEEeCC-CCCC
Q psy15750 55 VDTVLTLDKSTGLLIDAWG----KNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPY-TYNF 110 (115)
Q Consensus 55 ~~~I~vfdp~~G~~l~~~G----~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~-~G~f 110 (115)
.++|.-||+++|+.+-+.- ..++..| +.. .+|+||+.+... +++.+|. +|++
T Consensus 77 ~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~--~~~-~~G~i~~g~~~g-~~y~ld~~~G~~ 133 (370)
T COG1520 77 DGNIFALNPDTGLVKWSYPLLGAVAQLSGP--ILG-SDGKIYVGSWDG-KLYALDASTGTL 133 (370)
T ss_pred CCcEEEEeCCCCcEEecccCcCcceeccCc--eEE-eCCeEEEecccc-eEEEEECCCCcE
Confidence 3467777776666542211 1234444 233 399999997666 8999999 7765
No 89
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=57.95 E-value=66 Score=22.90 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=34.0
Q ss_pred CCCeEEEEeCCCCeEEeEec-CCCccCceeEEEccCCCEEEEeCCCCEEEEeC-CCCCC
Q psy15750 54 SVDTVLTLDKSTGLLIDAWG-KNKFYMPHGCTVDNKGFIWLTDVALHQVFKTP-YTYNF 110 (115)
Q Consensus 54 ~~~~I~vfdp~~G~~l~~~G-~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~-~~G~f 110 (115)
..+.+..+|+++|+++-+.- .+.+..+ ..-.++.+||....+ +++.+| .+|+.
T Consensus 44 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~~~~v~v~~~~~-~l~~~d~~tG~~ 98 (238)
T PF13360_consen 44 GDGNLYALDAKTGKVLWRFDLPGPISGA---PVVDGGRVYVGTSDG-SLYALDAKTGKV 98 (238)
T ss_dssp TTSEEEEEETTTSEEEEEEECSSCGGSG---EEEETTEEEEEETTS-EEEEEETTTSCE
T ss_pred CCCEEEEEECCCCCEEEEeeccccccce---eeeccccccccccee-eeEecccCCcce
Confidence 34789999987999875544 3344444 233567788776433 777777 55653
No 90
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.91 E-value=37 Score=27.39 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=41.0
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTP 105 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~ 105 (115)
..|+-++. +|++++++--.-|.=|.+|+--.+|..-++|....++++|.
T Consensus 108 ~~iVElt~-~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 108 AAIVELTK-EGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred ceEEEEec-CCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEE
Confidence 56777787 99999998877788999999988888888899998888554
No 91
>PRK02888 nitrous-oxide reductase; Validated
Probab=55.50 E-value=38 Score=29.91 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=29.6
Q ss_pred CeEEEEeCCC----C-eEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCC
Q psy15750 56 DTVLTLDKST----G-LLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPY 106 (115)
Q Consensus 56 ~~I~vfdp~~----G-~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~ 106 (115)
+.|.|+|..+ + +++..+- .=..|||+++.|||. +||+......|-++|-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred CEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 5677787744 2 2333321 223899999999986 5666555555554443
No 92
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=55.24 E-value=10 Score=23.53 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=23.8
Q ss_pred EEeCCCCeEEeEecCCCccCceeEEEccCCCEE
Q psy15750 60 TLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIW 92 (115)
Q Consensus 60 vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~ 92 (115)
|.|. +|+.+-+.-.+...-=.|-.+|.+|+||
T Consensus 15 V~d~-~G~~vG~vveGd~k~L~G~~vd~~G~I~ 46 (64)
T PF12396_consen 15 VVDD-DGNVVGRVVEGDPKKLVGKKVDEDGDIL 46 (64)
T ss_pred EECC-CCCEEEEEecCCHHHhcCCcCCCCCCEE
Confidence 6676 8888888777754433377899999987
No 93
>PRK13884 conjugal transfer peptidase TraF; Provisional
Probab=54.72 E-value=7.2 Score=28.55 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=29.5
Q ss_pred CCCCCCCeEEEEeCCCCeE---------E---------eEecCCCccCceeEEEc-cCCCEEEEeCC
Q psy15750 50 KRPISVDTVLTLDKSTGLL---------I---------DAWGKNKFYMPHGCTVD-NKGFIWLTDVA 97 (115)
Q Consensus 50 ~~~i~~~~I~vfdp~~G~~---------l---------~~~G~g~f~~P~Gi~vd-~~g~I~VtD~~ 97 (115)
..+++++++++|.|.+..+ + ..+.|+...+| |..|. .++.+||++..
T Consensus 48 ~~~~~~Gd~V~f~~p~~~~~~~a~~rgyl~~g~~p~~~~~liKRVva~p-GD~V~~~~~~l~VNG~~ 113 (178)
T PRK13884 48 SAPVEKGAYVLFCPPQRGVFDDAKERGYIGAGFCPGGYGYMMKRVLAAK-GDAVSVTDDGVRVNGEL 113 (178)
T ss_pred CCCCCCCCEEEEeCCchHHHHHHHhCCccccCcCCCCCCceEEEEEeeC-CcEEEEECCEEEECCEE
Confidence 4578999999997623211 1 02234556678 87776 56778887543
No 94
>KOG0263|consensus
Probab=52.57 E-value=41 Score=30.05 Aligned_cols=89 Identities=18% Similarity=0.138 Sum_probs=50.0
Q ss_pred eeeEEEeeeeecCccCCC----------CcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEecCC---------
Q psy15750 15 IGYVARVDGTSMQPVCPS----------TYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKN--------- 75 (115)
Q Consensus 15 v~~~~~v~G~Sm~pt~~~----------~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~G~g--------- 75 (115)
+|+.+-|.=.++.|--+- +-||+..=.-++.|.-..+++ ..+.|.| .|+.+.+-+..
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V---~al~~Sp-~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPV---TALAFSP-CGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCce---EEEEEcC-CCceEeecccCCcEEEEEcC
Confidence 344444555566665541 117765544444444444443 2445666 66665543311
Q ss_pred ----------CccCceeEEEccCCCEEEEeCCCCEEEEeCCC
Q psy15750 76 ----------KFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT 107 (115)
Q Consensus 76 ----------~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~ 107 (115)
+-..---++.-.||+|.|++.++++|..+|-.
T Consensus 608 ~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 608 NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 11111124556799999999999999988764
No 95
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=51.40 E-value=88 Score=25.57 Aligned_cols=51 Identities=10% Similarity=-0.006 Sum_probs=34.1
Q ss_pred eEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750 57 TVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNF 110 (115)
Q Consensus 57 ~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f 110 (115)
.|.+|+. .|+++.++.-.. .-..++.-..+.++.|.- .+..+..|+.-|++
T Consensus 62 ~I~iys~-sG~ll~~i~w~~-~~iv~~~wt~~e~LvvV~-~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS-GRIVGMGWTDDEELVVVQ-SDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECC-CCCEeEEEEECC-CCEEEEEECCCCeEEEEE-cCCEEEEEeCCCce
Confidence 5999999 999998855333 455566666665655442 34456667777776
No 96
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=51.17 E-value=33 Score=17.42 Aligned_cols=27 Identities=4% Similarity=-0.151 Sum_probs=20.1
Q ss_pred CceeEEEccCCCEEEEeCCCCEEEEeC
Q psy15750 79 MPHGCTVDNKGFIWLTDVALHQVFKTP 105 (115)
Q Consensus 79 ~P~Gi~vd~~g~I~VtD~~~h~V~~f~ 105 (115)
.-..++..++++..++-..+++|..||
T Consensus 13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cEEEEEEecccccceeeCCCCEEEEEC
Confidence 344778888888888877778887764
No 97
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=50.04 E-value=88 Score=24.44 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=29.8
Q ss_pred CeEEEEeCCCCeEEeEec--CCCccCceeEEEccCCCEEEEeCCCCEEEEeCC-CCC
Q psy15750 56 DTVLTLDKSTGLLIDAWG--KNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPY-TYN 109 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G--~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~-~G~ 109 (115)
+.+..||+++|+.+-+.- .+... +.+++ ++.+||.+ .++.++.+|. +|+
T Consensus 75 g~v~a~d~~tG~~~W~~~~~~~~~~---~p~v~-~~~v~v~~-~~g~l~ald~~tG~ 126 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVDLDERLSG---GVGAD-GGLVFVGT-EKGEVIALDAEDGK 126 (377)
T ss_pred CeEEEEEccCCcEeeeecCCCCccc---ceEEc-CCEEEEEc-CCCEEEEEECCCCc
Confidence 567788876888764422 22122 33554 67888875 3567888886 455
No 98
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=49.56 E-value=32 Score=26.97 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=33.4
Q ss_pred CCeEEEEeCCCCeEEeEec-----CCCccCceeEEEccCCCEEEEe-CCCCEEEEeCCCCCC
Q psy15750 55 VDTVLTLDKSTGLLIDAWG-----KNKFYMPHGCTVDNKGFIWLTD-VALHQVFKTPYTYNF 110 (115)
Q Consensus 55 ~~~I~vfdp~~G~~l~~~G-----~g~f~~P~Gi~vd~~g~I~VtD-~~~h~V~~f~~~G~f 110 (115)
.+.|.++|.++++++.++- ......+.|.. ...+.+|+.+ ....+++.++.+|+.
T Consensus 66 ~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~-~~~Dsi~l~~~~~~~~l~~~n~~G~~ 126 (333)
T PF13970_consen 66 SHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFF-QNLDSIFLFNSYAFPKLFLFNSQGEV 126 (333)
T ss_dssp --EEEEEETTTTEEEEEEE-BSSSTTB-TT---EE-ESSSTTSEEEEGGGTEEEEE-TT--E
T ss_pred cceEEEEECCCCceeeeeeeeeECCCCccccccce-EcCCceEEEecCCcceEEEEcCCCeE
Confidence 3789999988999886654 33456666777 5556666655 466889999998864
No 99
>KOG1520|consensus
Probab=49.10 E-value=18 Score=29.88 Aligned_cols=34 Identities=15% Similarity=0.403 Sum_probs=25.5
Q ss_pred CCccCceeEEEccCC-CEEEEeCCCCEEEEeCCCC
Q psy15750 75 NKFYMPHGCTVDNKG-FIWLTDVALHQVFKTPYTY 108 (115)
Q Consensus 75 g~f~~P~Gi~vd~~g-~I~VtD~~~h~V~~f~~~G 108 (115)
..++.|.|+++.+|+ .+.++.....++.||=-.|
T Consensus 216 d~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g 250 (376)
T KOG1520|consen 216 DGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKG 250 (376)
T ss_pred hcccccccccCCCCCCEEEEEeeccceeeeeEecC
Confidence 368899999999766 4566688888887765444
No 100
>KOG0268|consensus
Probab=48.40 E-value=24 Score=29.35 Aligned_cols=56 Identities=5% Similarity=-0.021 Sum_probs=39.6
Q ss_pred CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCCCc
Q psy15750 55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFGD 112 (115)
Q Consensus 55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f~~ 112 (115)
...|++||...++.+.+..-+. -+.+|+-.|++..+|+-+..|++|.||...-..|
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p 264 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRP 264 (433)
T ss_pred CCceEEEecccCCccceeeeec--cccceecCccccceeeccccccceehhhhhhccc
Confidence 3456777776666666654221 3668888899999999889999998887544333
No 101
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=47.90 E-value=43 Score=17.77 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=16.2
Q ss_pred EEccCCCEEEEeCCCCEEEEeCCC
Q psy15750 84 TVDNKGFIWLTDVALHQVFKTPYT 107 (115)
Q Consensus 84 ~vd~~g~I~VtD~~~h~V~~f~~~ 107 (115)
+++ +|.||+.+. +.+++.+|++
T Consensus 18 ~v~-~g~vyv~~~-dg~l~ald~~ 39 (40)
T PF13570_consen 18 AVA-GGRVYVGTG-DGNLYALDAA 39 (40)
T ss_dssp EEC-TSEEEEE-T-TSEEEEEETT
T ss_pred EEE-CCEEEEEcC-CCEEEEEeCC
Confidence 664 789999965 7788888764
No 102
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=47.36 E-value=43 Score=27.82 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=17.4
Q ss_pred CceeEEEccC-CCEEEEeCCC
Q psy15750 79 MPHGCTVDNK-GFIWLTDVAL 98 (115)
Q Consensus 79 ~P~Gi~vd~~-g~I~VtD~~~ 98 (115)
-|.|++.++. |.+|++|++.
T Consensus 240 N~qGl~w~P~tg~Lw~~e~g~ 260 (399)
T COG2133 240 NPQGLAWHPVTGALWTTEHGP 260 (399)
T ss_pred CccceeecCCCCcEEEEecCC
Confidence 5889999976 9999999886
No 103
>PF13734 Inhibitor_I69: Spi protease inhibitor; PDB: 1PVJ_A 1DKI_D 2UZJ_A 2JTC_A 4D8E_A 4D8I_A 4D8B_A.
Probab=45.60 E-value=19 Score=24.02 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=19.2
Q ss_pred ccCCCEEEE-eCCCCEEEEeCCCCCCCc
Q psy15750 86 DNKGFIWLT-DVALHQVFKTPYTYNFGD 112 (115)
Q Consensus 86 d~~g~I~Vt-D~~~h~V~~f~~~G~f~~ 112 (115)
+..|.+.|+ |...+.|+-|+.+|.|..
T Consensus 49 ~~~GFVIVSgDdr~~~ILaYS~~G~fd~ 76 (96)
T PF13734_consen 49 NNKGFVIVSGDDRMGPILAYSDEGSFDT 76 (96)
T ss_dssp TTS-EEEEESBTTS-SEEEEESSS----
T ss_pred CCCEEEEEECCCCccceeEEcCCCCcCc
Confidence 578999999 888999999999999964
No 104
>KOG0292|consensus
Probab=44.67 E-value=41 Score=31.26 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=50.4
Q ss_pred eEEEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeC
Q psy15750 17 YVARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDV 96 (115)
Q Consensus 17 ~~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~ 96 (115)
.-++|+|.|+.|+-+ |-.. +.+.+.|+.||..-|.++.+|-.-. +--.|++.-++.-++|+.-
T Consensus 8 kSsRvKglsFHP~rP---wILt-------------slHsG~IQlWDYRM~tli~rFdeHd-GpVRgv~FH~~qplFVSGG 70 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRP---WILT-------------SLHSGVIQLWDYRMGTLIDRFDEHD-GPVRGVDFHPTQPLFVSGG 70 (1202)
T ss_pred ccccccceecCCCCC---EEEE-------------eecCceeeeehhhhhhHHhhhhccC-CccceeeecCCCCeEEecC
Confidence 357999999999865 1111 1234788899987777777665311 1234788888999999977
Q ss_pred CCCEEEEeCCC
Q psy15750 97 ALHQVFKTPYT 107 (115)
Q Consensus 97 ~~h~V~~f~~~ 107 (115)
..-.|.+++.+
T Consensus 71 DDykIkVWnYk 81 (1202)
T KOG0292|consen 71 DDYKIKVWNYK 81 (1202)
T ss_pred CccEEEEEecc
Confidence 77777766544
No 105
>KOG2096|consensus
Probab=44.56 E-value=66 Score=26.59 Aligned_cols=56 Identities=14% Similarity=0.062 Sum_probs=39.8
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEE----EeCCCCCCCcc
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVF----KTPYTYNFGDM 113 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~----~f~~~G~f~~~ 113 (115)
.+|.+++. .|++|.++-..+...- --++.|+|....+---.--|+ .|..+|.|.++
T Consensus 209 t~i~lw~l-kGq~L~~idtnq~~n~-~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev 268 (420)
T KOG2096|consen 209 TKICLWDL-KGQLLQSIDTNQSSNY-DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEV 268 (420)
T ss_pred CcEEEEec-CCceeeeecccccccc-ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhh
Confidence 56888998 6999999888777653 557888998776533333333 67778888764
No 106
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=44.36 E-value=48 Score=25.35 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=28.4
Q ss_pred EEEEeCCCCeEEeEecC------C-CccCc---eeEEEccCCCEEEEeCCCCEEEEe
Q psy15750 58 VLTLDKSTGLLIDAWGK------N-KFYMP---HGCTVDNKGFIWLTDVALHQVFKT 104 (115)
Q Consensus 58 I~vfdp~~G~~l~~~G~------g-~f~~P---~Gi~vd~~g~I~VtD~~~h~V~~f 104 (115)
-+.+|+ +|.+...-|. + .+.+| ..++|++||.|++.+....++..+
T Consensus 104 ~F~~d~-~G~Lvt~~G~~vlg~~g~pI~lp~~~~~~~I~~dG~i~~~g~~vg~l~lv 159 (238)
T PRK12690 104 SFTPNA-EGELVDPDGNRLLDAGGAPIFIPPDARSVAVGADGTLSADGQPLGQIGLY 159 (238)
T ss_pred CeEECC-CCCEEcCCCCEeECCCCCccccCCCCceEEECCCCeEEECCeeeeeEEEE
Confidence 345566 6776655442 2 46677 479999999998754334444433
No 107
>COG4681 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.83 E-value=24 Score=25.97 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=13.6
Q ss_pred cCCCEEEEeC-CCCEEEE
Q psy15750 87 NKGFIWLTDV-ALHQVFK 103 (115)
Q Consensus 87 ~~g~I~VtD~-~~h~V~~ 103 (115)
++|.||++|. ++|+|..
T Consensus 157 qeG~iwlsD~~~nlev~l 174 (181)
T COG4681 157 QEGTIWLSDDNNNLEVQL 174 (181)
T ss_pred ecCcEEEEcCCCCeeEeh
Confidence 7999999955 4788764
No 108
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=43.03 E-value=1.6e+02 Score=23.08 Aligned_cols=43 Identities=33% Similarity=0.393 Sum_probs=32.5
Q ss_pred CCeEEEEeCCCCeEEeEecCC----------CccCceeEEEc----cCCCEEEEeCC
Q psy15750 55 VDTVLTLDKSTGLLIDAWGKN----------KFYMPHGCTVD----NKGFIWLTDVA 97 (115)
Q Consensus 55 ~~~I~vfdp~~G~~l~~~G~g----------~f~~P~Gi~vd----~~g~I~VtD~~ 97 (115)
.+.|.++|+++|+++-..|.. .|..-|....- .+++|-+=|++
T Consensus 164 ~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 164 TSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred cCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 468999998899999887632 26677777665 67778787884
No 109
>KOG0272|consensus
Probab=41.72 E-value=88 Score=26.49 Aligned_cols=100 Identities=15% Similarity=0.008 Sum_probs=62.4
Q ss_pred EecceeeEEEeeeeecCccCC-----CCc-----ccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEecC------
Q psy15750 11 FCDSIGYVARVDGTSMQPVCP-----STY-----MDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGK------ 74 (115)
Q Consensus 11 ~~d~v~~~~~v~G~Sm~pt~~-----~~~-----~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~G~------ 74 (115)
+.|..|..++|.-++..|.+. .+| ||+-. +.+. .++.+-=+.=--+.|.+ +|.+..+-|-
T Consensus 254 l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t--k~El-L~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 254 LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET--KSEL-LLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRV 329 (459)
T ss_pred hhhhhcchhhheeeeecCCCceeeecccccchhhccccc--chhh-HhhcccccccceeEecC-CCceeeccCccchhhe
Confidence 345667778888899999886 233 66644 2222 22333111122357898 9999877552
Q ss_pred -------------CCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCCCccc
Q psy15750 75 -------------NKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFGDMT 114 (115)
Q Consensus 75 -------------g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f~~~~ 114 (115)
|...--.+++-+|+|.-..|..+..++.++|..+.-..+|
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT 382 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccccee
Confidence 1222234667778898888888888888888777655443
No 110
>PTZ00420 coronin; Provisional
Probab=41.08 E-value=1.4e+02 Score=25.82 Aligned_cols=29 Identities=7% Similarity=-0.122 Sum_probs=22.1
Q ss_pred ceeEEEccCCCEEEEeCCCCEEEEeCCCC
Q psy15750 80 PHGCTVDNKGFIWLTDVALHQVFKTPYTY 108 (115)
Q Consensus 80 P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G 108 (115)
...++.+++|++.++-....++..||+..
T Consensus 170 V~SlswspdG~lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 170 LSSLKWNIKGNLLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred EEEEEECCCCCEEEEEecCCEEEEEECCC
Confidence 34667788999998876777888888753
No 111
>PF09816 EAF: RNA polymerase II transcription elongation factor; InterPro: IPR019194 This entry represents the N-terminal domain of ELL-associated factor (Eaf) proteins, which act as transcriptional transactivators of ELL and ELL2 RNA Polymerase II (Pol II) transcriptional elongation factors [, , , ]. Eaf proteins form a stable heterodimer complex with ELL proteins to facilitate the binding of RNA polymerase II to activate transcription elongation. ELL and EAF1 are components of Cajal bodies, which have a role in leukemogenesis []. EAF1 also has the capacity to interact with ELL1 and ELL2. The N terminus of approx 120 of EAF1 has a region of high serine, aspartic acid, and glutamic acid residues [, ].
Probab=40.98 E-value=33 Score=22.91 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.1
Q ss_pred CCeEEEEeCCCCeEEeE
Q psy15750 55 VDTVLTLDKSTGLLIDA 71 (115)
Q Consensus 55 ~~~I~vfdp~~G~~l~~ 71 (115)
..+|++||+++|.+...
T Consensus 78 ~ecVLifD~~~~~f~LE 94 (109)
T PF09816_consen 78 KECVLIFDPETGEFVLE 94 (109)
T ss_pred cEEEEEEECCCCEEEEE
Confidence 68999999988887554
No 112
>PTZ00421 coronin; Provisional
Probab=40.69 E-value=2.2e+02 Score=23.99 Aligned_cols=51 Identities=10% Similarity=-0.090 Sum_probs=32.2
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT 107 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~ 107 (115)
+.|.+||..+|+.+..+-. .-..-..++..++|++.++-..+..|..+|+.
T Consensus 148 gtVrIWDl~tg~~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r 198 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR 198 (493)
T ss_pred CEEEEEECCCCeEEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECC
Confidence 5678888766776655431 11122355666778877776677777777754
No 113
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=39.27 E-value=1.4e+02 Score=24.05 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=31.3
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT 107 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~ 107 (115)
+.|.|+|.++.+++.++-.+. ..+.+++..+||. +||+.. ...|-+.|..
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~ 66 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVANR-DGTVSVIDLA 66 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEET-TSEEEEEETT
T ss_pred CEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEcC-CCeEEEEECC
Confidence 789999997888888875432 2234456667774 788864 4567777664
No 114
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=38.83 E-value=70 Score=25.57 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=32.6
Q ss_pred CCCeEEEEeCCC-CeEEeEecC----CCccCceeEEEccCC---CEEEEeCCCCEEEEeCCCCC
Q psy15750 54 SVDTVLTLDKST-GLLIDAWGK----NKFYMPHGCTVDNKG---FIWLTDVALHQVFKTPYTYN 109 (115)
Q Consensus 54 ~~~~I~vfdp~~-G~~l~~~G~----g~f~~P~Gi~vd~~g---~I~VtD~~~h~V~~f~~~G~ 109 (115)
.+..|.++|.++ |+++.++.- +-+..|..+-.|.|| .+|..|.. .+++|||..+.
T Consensus 179 ~~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl~-GnlwR~dl~~~ 241 (335)
T PF05567_consen 179 GGAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDLG-GNLWRFDLSSA 241 (335)
T ss_dssp --EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEETT-SEEEEEE--TT
T ss_pred CCcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcCC-CcEEEEECCCC
Confidence 457899999988 999988752 224445333334454 67888864 78999988754
No 115
>KOG0291|consensus
Probab=35.94 E-value=1.4e+02 Score=27.28 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=16.3
Q ss_pred eEEEccCCCEEEE-eCCCCEEEEeCC
Q psy15750 82 GCTVDNKGFIWLT-DVALHQVFKTPY 106 (115)
Q Consensus 82 Gi~vd~~g~I~Vt-D~~~h~V~~f~~ 106 (115)
.+++|+.|.+.++ +...-.||+++-
T Consensus 440 cvavD~sGelV~AG~~d~F~IfvWS~ 465 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQDSFEIFVWSV 465 (893)
T ss_pred EEEEcCCCCEEEeeccceEEEEEEEe
Confidence 4678888877776 444556666654
No 116
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=35.02 E-value=54 Score=16.67 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=10.7
Q ss_pred ceeEEEccCCCEEEEe
Q psy15750 80 PHGCTVDNKGFIWLTD 95 (115)
Q Consensus 80 P~Gi~vd~~g~I~VtD 95 (115)
=|.+++..+|.+|.-.
T Consensus 9 ~ht~al~~~g~v~~wG 24 (30)
T PF13540_consen 9 YHTCALTSDGEVYCWG 24 (30)
T ss_dssp SEEEEEE-TTEEEEEE
T ss_pred CEEEEEEcCCCEEEEc
Confidence 4667777788887764
No 117
>KOG0316|consensus
Probab=34.39 E-value=1.5e+02 Score=23.56 Aligned_cols=49 Identities=10% Similarity=-0.006 Sum_probs=28.7
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTP 105 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~ 105 (115)
..|.+||-.+|+++++|+. ...--.-++-+.+..|.++..-...+..||
T Consensus 81 k~v~vwDV~TGkv~Rr~rg-H~aqVNtV~fNeesSVv~SgsfD~s~r~wD 129 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRG-HLAQVNTVRFNEESSVVASGSFDSSVRLWD 129 (307)
T ss_pred ceEEEEEcccCeeeeeccc-ccceeeEEEecCcceEEEeccccceeEEEE
Confidence 4688999989999999873 111111233344555555555455555444
No 118
>KOG0285|consensus
Probab=34.35 E-value=2.5e+02 Score=23.59 Aligned_cols=52 Identities=19% Similarity=0.108 Sum_probs=35.2
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTY 108 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G 108 (115)
..|.++|-.+|+++.+. .|....-.|+++.+..-...+--...+|+.+|.+.
T Consensus 173 rtikIwDlatg~Lkltl-tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 173 RTIKIWDLATGQLKLTL-TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred ceeEEEEcccCeEEEee-cchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 57889999889987773 33444456888865444444444577888888764
No 119
>KOG1446|consensus
Probab=34.27 E-value=1.6e+02 Score=23.75 Aligned_cols=22 Identities=23% Similarity=0.114 Sum_probs=19.0
Q ss_pred EEecceeeEEEeeeeecCccCC
Q psy15750 10 TFCDSIGYVARVDGTSMQPVCP 31 (115)
Q Consensus 10 ~~~d~v~~~~~v~G~Sm~pt~~ 31 (115)
.+.-+.|.-.+|...+|.|-..
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d 113 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDD 113 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCC
Confidence 5677888899999999999875
No 120
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=33.76 E-value=1.3e+02 Score=23.45 Aligned_cols=70 Identities=10% Similarity=0.142 Sum_probs=40.6
Q ss_pred eeecCccCCCCcccc---eEEeecccc-----cCCCCCCCCCeEEEEeCCCCeEEeEecCCC--c-----cCceeEEEcc
Q psy15750 23 GTSMQPVCPSTYMDT---LYCSIEESE-----SGTKRPISVDTVLTLDKSTGLLIDAWGKNK--F-----YMPHGCTVDN 87 (115)
Q Consensus 23 G~Sm~pt~~~~~~D~---~~~~~~~~~-----~~~~~~i~~~~I~vfdp~~G~~l~~~G~g~--f-----~~P~Gi~vd~ 87 (115)
...|.|.++.+|.=. .......+. ....+.++.+.++-.+| -++-+-+|++. . ..+--|++..
T Consensus 106 ~~~~r~~l~vGD~v~AkV~~vd~~~~~~L~~k~~~~GkL~~G~iv~i~p--~kVpRvig~~~sm~~~l~~~~~~~I~VG~ 183 (239)
T COG1097 106 EKDLRPFLNVGDLVYAKVVDVDRDGEVELTLKDEGLGKLKNGQIVKIPP--SKVPRVIGKKGSMLNMLKEKTGCEIIVGQ 183 (239)
T ss_pred ccccccccccCCEEEEEEEEccCCCceEEEeecCCCccccCCEEEEEch--hhcceEecCCCcHHHHhhhhcCeEEEEec
Confidence 678899999877100 000000000 12456667777766666 55556566531 1 1355688889
Q ss_pred CCCEEEE
Q psy15750 88 KGFIWLT 94 (115)
Q Consensus 88 ~g~I~Vt 94 (115)
+|.|||.
T Consensus 184 NG~IWV~ 190 (239)
T COG1097 184 NGRIWVD 190 (239)
T ss_pred CCEEEec
Confidence 9999998
No 121
>KOG0266|consensus
Probab=33.48 E-value=2e+02 Score=23.62 Aligned_cols=54 Identities=13% Similarity=-0.028 Sum_probs=31.1
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNF 110 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f 110 (115)
+.|.++|.++|+.++++-.-.=. =.+++..++|++.++-..+..+..+|.....
T Consensus 268 ~tvriWd~~~~~~~~~l~~hs~~-is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 268 GTVRIWDVRTGECVRKLKGHSDG-ISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred CcEEEEeccCCeEEEeeeccCCc-eEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 44555555444554443321111 1245667888888886667788888876543
No 122
>KOG0296|consensus
Probab=33.46 E-value=2.9e+02 Score=23.10 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=39.5
Q ss_pred CCCCCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeC
Q psy15750 50 KRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTP 105 (115)
Q Consensus 50 ~~~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~ 105 (115)
.....++.|-.||..+|+++..+-.-+...= .+++-++.+..||-...|.-.+|.
T Consensus 342 ~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il-~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 342 LTACANGKVRQWDARTGQLKFTYTGHQMGIL-DFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred eeeccCceEEeeeccccceEEEEecCchhee-EEEEcCCCcEEEEecCCCeEEEEe
Confidence 4455678899999999999887653232221 567778999999977777766664
No 123
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=33.22 E-value=62 Score=26.52 Aligned_cols=34 Identities=12% Similarity=0.280 Sum_probs=25.6
Q ss_pred ceeEEEccCC-CEEEEeCCCCEEEEeCC-CCCCCcc
Q psy15750 80 PHGCTVDNKG-FIWLTDVALHQVFKTPY-TYNFGDM 113 (115)
Q Consensus 80 P~Gi~vd~~g-~I~VtD~~~h~V~~f~~-~G~f~~~ 113 (115)
+|..-.+|+| .++|.|-+..+|+.|+. +|++.+.
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~ 182 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA 182 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccc
Confidence 6778888998 56777999999987765 4665543
No 124
>KOG2110|consensus
Probab=33.22 E-value=2.4e+02 Score=23.55 Aligned_cols=60 Identities=10% Similarity=0.007 Sum_probs=36.0
Q ss_pred ceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCC
Q psy15750 37 TLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVA 97 (115)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~ 97 (115)
++.....|.|....++-..++|++||..+-+-...+-.-.=.+ ..++..++|+..-|-..
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~l-Aalafs~~G~llATASe 193 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPL-AALAFSPDGTLLATASE 193 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCce-eEEEECCCCCEEEEecc
Confidence 3445556667777888888999999874444444433211112 25667777777766333
No 125
>KOG0973|consensus
Probab=31.60 E-value=1.8e+02 Score=27.09 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=36.2
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTP 105 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~ 105 (115)
+.|++||.++.+.+. .-++.-..+.|++.||-|..+-+=...+.+..|.
T Consensus 151 nsViiwn~~tF~~~~-vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 151 NSVIIWNAKTFELLK-VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWR 199 (942)
T ss_pred ceEEEEccccceeee-eeecccccccceEECCccCeeeeecCCceEEEEE
Confidence 568888875553333 3456677899999999999998877777777664
No 126
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=30.83 E-value=2.1e+02 Score=22.67 Aligned_cols=45 Identities=9% Similarity=0.106 Sum_probs=25.9
Q ss_pred CeEEEEeCCCCeEEeEecC---CCccCceeEEEccCCCEEEEeCCCCEEEEeC
Q psy15750 56 DTVLTLDKSTGLLIDAWGK---NKFYMPHGCTVDNKGFIWLTDVALHQVFKTP 105 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~---g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~ 105 (115)
+.+..+|+++|+++.+.-- +....| .+ .+|+|||.+. +.+++.|+
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P---~~-~~~~l~v~t~-~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEP---VV-ADDKLLIQAR-DGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCC---EE-ECCEEEEEeC-CceEEEEe
Confidence 4456667777877655421 222233 23 3678999854 44566654
No 127
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=29.99 E-value=79 Score=27.02 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=28.0
Q ss_pred CCCccCceeEEEcc-CCCEEEEeCCC-------------------CEEEEeCCCCC
Q psy15750 74 KNKFYMPHGCTVDN-KGFIWLTDVAL-------------------HQVFKTPYTYN 109 (115)
Q Consensus 74 ~g~f~~P~Gi~vd~-~g~I~VtD~~~-------------------h~V~~f~~~G~ 109 (115)
.-.|.-|.|+++++ +|.+|++-..+ .+|+++++++.
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~ 401 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGN 401 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCC
Confidence 34688999999995 69999984333 38999998865
No 128
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=29.70 E-value=1e+02 Score=23.75 Aligned_cols=35 Identities=17% Similarity=0.388 Sum_probs=24.0
Q ss_pred EEEeCCCCeEEeEecCCC---ccCc---eeEEEccCCCEEEE
Q psy15750 59 LTLDKSTGLLIDAWGKNK---FYMP---HGCTVDNKGFIWLT 94 (115)
Q Consensus 59 ~vfdp~~G~~l~~~G~g~---f~~P---~Gi~vd~~g~I~Vt 94 (115)
+.+|. +|.|+..=|... +.+| ..+.|++||.|+..
T Consensus 120 F~~d~-~G~Lvt~~G~~Vl~~I~lp~~~~~i~I~~dG~I~~~ 160 (262)
T PRK12692 120 FNKNA-AGQLVTMEGYAVDPAILIPQNTTQVTINESGQVFAK 160 (262)
T ss_pred ceECC-CCCEEcCCCCCcccccccCCCCcceEECCCCEEEEe
Confidence 34566 777766555433 4456 47899999999874
No 129
>TIGR03833 conserved hypothetical protein. A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895. The function is unknown.
Probab=29.12 E-value=1.4e+02 Score=18.45 Aligned_cols=30 Identities=33% Similarity=0.494 Sum_probs=20.8
Q ss_pred eCCCCeEEeEecCCCc----cCceeEEEc-cCCCE
Q psy15750 62 DKSTGLLIDAWGKNKF----YMPHGCTVD-NKGFI 91 (115)
Q Consensus 62 dp~~G~~l~~~G~g~f----~~P~Gi~vd-~~g~I 91 (115)
|+.+|++.+...+..+ .-||||-|- .+|.|
T Consensus 21 DQ~tG~lt~G~V~diLT~s~~Hp~GIKVrL~dG~V 55 (62)
T TIGR03833 21 DQRTGKLTRGIVKDILTNSPTHPHGIKVRLEDGQV 55 (62)
T ss_pred cCCCCceeeEEhhhhhcCCCCCCCceEEEEecCCe
Confidence 6568888777666433 369999986 66653
No 130
>PRK00756 acyltransferase NodA; Provisional
Probab=29.05 E-value=84 Score=23.50 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.9
Q ss_pred ceeeEEEeeeeecCccCCC
Q psy15750 14 SIGYVARVDGTSMQPVCPS 32 (115)
Q Consensus 14 ~v~~~~~v~G~Sm~pt~~~ 32 (115)
.-|-...++|+.+.+|+..
T Consensus 138 r~g~~ti~~gvrVRSTl~~ 156 (196)
T PRK00756 138 RNGLATIVTGVRVRSTLPD 156 (196)
T ss_pred ccCcceecccceeeccCcc
Confidence 5667788999999999964
No 131
>cd02421 Peptidase_C39_likeD A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this sub-family.
Probab=28.81 E-value=1.5e+02 Score=19.03 Aligned_cols=34 Identities=9% Similarity=-0.056 Sum_probs=22.1
Q ss_pred CccCceeEEEccCCCEEEE-eCCCCEEEEeCCCCCC
Q psy15750 76 KFYMPHGCTVDNKGFIWLT-DVALHQVFKTPYTYNF 110 (115)
Q Consensus 76 ~f~~P~Gi~vd~~g~I~Vt-D~~~h~V~~f~~~G~f 110 (115)
...+| -|..+.+|+.+|- .....++..++|++..
T Consensus 67 ~~~lP-~i~~~~~g~~~Vl~~~~~~~~~i~dp~~~~ 101 (124)
T cd02421 67 TLLLP-AILLLKNGRACVLLGVDDGHARILDPESGG 101 (124)
T ss_pred cccCC-EEEEEcCCCEEEEEEecCCeEEEEccCCCC
Confidence 35688 7777777776653 4445667788886433
No 132
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=28.30 E-value=97 Score=23.73 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=25.5
Q ss_pred CeEEEEeCCCCeEEeEecCCC---ccCc---eeEEEccCCCEEEE
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNK---FYMP---HGCTVDNKGFIWLT 94 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~---f~~P---~Gi~vd~~g~I~Vt 94 (115)
+--+.+|+ +|.|+..=|... +.+| ..+.|+++|.|++.
T Consensus 115 ~G~F~~d~-~G~Lvt~~G~~Vl~~I~lp~~~~~~~I~~dG~i~~~ 158 (259)
T TIGR02488 115 DGAFKINA-EGQLVTSNGYPLQPEITIPENATSITVGSDGEVSVR 158 (259)
T ss_pred CCceEECC-CCCEECCCCCEecCceecCCCCceEEECCCCeEEEe
Confidence 33345677 787776655433 3356 46999999999884
No 133
>KOG2315|consensus
Probab=28.30 E-value=2e+02 Score=25.17 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=39.0
Q ss_pred CCCCCCCCCeEEEEeCCCCeEEeEecCC----CccCceeE--EEc----cCCCEEEEeC-----------CCCEEEEeCC
Q psy15750 48 GTKRPISVDTVLTLDKSTGLLIDAWGKN----KFYMPHGC--TVD----NKGFIWLTDV-----------ALHQVFKTPY 106 (115)
Q Consensus 48 ~~~~~i~~~~I~vfdp~~G~~l~~~G~g----~f~~P~Gi--~vd----~~g~I~VtD~-----------~~h~V~~f~~ 106 (115)
|.+.| .++-+||. .|+++..+|.| .|..|||= .+. -.|.+=|=|+ .+-.++.+.|
T Consensus 289 yGfMP---Akvtifnl-r~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~P 364 (566)
T KOG2315|consen 289 YGFMP---AKVTIFNL-RGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSP 364 (566)
T ss_pred Eeccc---ceEEEEcC-CCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcC
Confidence 44555 78999999 99999999975 46677772 221 1343333333 3466778888
Q ss_pred CCCC
Q psy15750 107 TYNF 110 (115)
Q Consensus 107 ~G~f 110 (115)
+|++
T Consensus 365 dGe~ 368 (566)
T KOG2315|consen 365 DGEY 368 (566)
T ss_pred CCcE
Confidence 8886
No 134
>KOG0266|consensus
Probab=28.09 E-value=3.3e+02 Score=22.39 Aligned_cols=52 Identities=12% Similarity=0.005 Sum_probs=36.8
Q ss_pred CeEEEEeC-CCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCC
Q psy15750 56 DTVLTLDK-STGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTY 108 (115)
Q Consensus 56 ~~I~vfdp-~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G 108 (115)
..|-+||. .+++.++.+ ++.-..-..++..++|+..++....+.|..++...
T Consensus 225 ~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~ 277 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT 277 (456)
T ss_pred ceEEEeeccCCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC
Confidence 45667766 334555553 24444557888899999999988899999888764
No 135
>KOG4499|consensus
Probab=27.87 E-value=1.9e+02 Score=23.02 Aligned_cols=30 Identities=13% Similarity=0.010 Sum_probs=24.3
Q ss_pred CccCceeEEEcc-CCCEEEEeCCCCEEEEeC
Q psy15750 76 KFYMPHGCTVDN-KGFIWLTDVALHQVFKTP 105 (115)
Q Consensus 76 ~f~~P~Gi~vd~-~g~I~VtD~~~h~V~~f~ 105 (115)
+...|.|++=|. .-..|+.|..+|+|.-||
T Consensus 156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred hccCCccccccccCcEEEEEccCceEEeeee
Confidence 566899999995 456789999999996555
No 136
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=27.65 E-value=95 Score=23.74 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=23.7
Q ss_pred EEEeCCCCeEEeEecCCC---ccCc---eeEEEccCCCEEEE
Q psy15750 59 LTLDKSTGLLIDAWGKNK---FYMP---HGCTVDNKGFIWLT 94 (115)
Q Consensus 59 ~vfdp~~G~~l~~~G~g~---f~~P---~Gi~vd~~g~I~Vt 94 (115)
+.+|+ +|.++..=|... +.+| ..+.|+++|.|++.
T Consensus 120 F~~d~-~G~Lvt~~G~~vl~~I~~p~~~~~~~i~~dG~I~~~ 160 (261)
T PRK12693 120 FKLDQ-DGQLVTSGGYPLQPEITIPENATSITIGTDGTVSVT 160 (261)
T ss_pred eeECC-CCCEECCCCCEEeeecccCCCCceEEECCCCeEEEe
Confidence 45566 777766555322 4466 46999999999884
No 137
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=27.25 E-value=1.2e+02 Score=25.02 Aligned_cols=37 Identities=19% Similarity=0.431 Sum_probs=25.4
Q ss_pred EEeEecCCCccCceeEEEc-cCCCEEEEeCCCCEEEEeCCC
Q psy15750 68 LIDAWGKNKFYMPHGCTVD-NKGFIWLTDVALHQVFKTPYT 107 (115)
Q Consensus 68 ~l~~~G~g~f~~P~Gi~vd-~~g~I~VtD~~~h~V~~f~~~ 107 (115)
++|++.- -.-|.|+.+| ..|.+||.+.. .=|-+|+.+
T Consensus 200 lVR~f~~--~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Ae 237 (381)
T PF02333_consen 200 LVREFKV--GSQPEGCVVDDETGRLYVGEED-VGIWRYDAE 237 (381)
T ss_dssp EEEEEE---SS-EEEEEEETTTTEEEEEETT-TEEEEEESS
T ss_pred EEEEecC--CCcceEEEEecccCCEEEecCc-cEEEEEecC
Confidence 3455442 2258899999 68999999764 567788776
No 138
>KOG0291|consensus
Probab=27.18 E-value=2e+02 Score=26.40 Aligned_cols=34 Identities=9% Similarity=-0.021 Sum_probs=24.7
Q ss_pred ceeEEEccCCCEEEEeCCCCEEE---EeCCCCCCCcc
Q psy15750 80 PHGCTVDNKGFIWLTDVALHQVF---KTPYTYNFGDM 113 (115)
Q Consensus 80 P~Gi~vd~~g~I~VtD~~~h~V~---~f~~~G~f~~~ 113 (115)
-+|++.+++|++.++..-...|. .|++.|..+++
T Consensus 481 Vs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl 517 (893)
T KOG0291|consen 481 VSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL 517 (893)
T ss_pred ceeeEEccccCeEEeccccceEEEEEeeccCceeeeE
Confidence 35788999999999977777777 55666655544
No 139
>KOG1272|consensus
Probab=26.79 E-value=85 Score=27.01 Aligned_cols=30 Identities=17% Similarity=-0.022 Sum_probs=25.2
Q ss_pred eeEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750 81 HGCTVDNKGFIWLTDVALHQVFKTPYTYNF 110 (115)
Q Consensus 81 ~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f 110 (115)
.+|+||++|+..+|--..+++..+|...-.
T Consensus 297 ~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 297 SSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred ceEEECCCCcEEeecccccceeEeeecccc
Confidence 489999999999997778899988876544
No 140
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=26.62 E-value=1.7e+02 Score=23.91 Aligned_cols=48 Identities=10% Similarity=-0.044 Sum_probs=25.9
Q ss_pred eEEEEeCCCCeEEeEecCCCccCceeEEEc--cCCCEEEEeCCCCEEEEeCC
Q psy15750 57 TVLTLDKSTGLLIDAWGKNKFYMPHGCTVD--NKGFIWLTDVALHQVFKTPY 106 (115)
Q Consensus 57 ~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd--~~g~I~VtD~~~h~V~~f~~ 106 (115)
.|-+||+++++.+.++--..-.. .|+|. .+-.+|..+.++..+++||+
T Consensus 270 eVWv~D~~t~krv~Ri~l~~~~~--Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLEHPID--SIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp EEEEEETTTTEEEEEEEEEEEES--EEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred EEEEEECCCCeEEEEEeCCCccc--eEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 68888999999888765211111 33333 22344444444555555554
No 141
>PF12134 PRP8_domainIV: PRP8 domain IV core; InterPro: IPR021983 This domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with PF10597 from PFAM, PF10596 from PFAM, PF10598 from PFAM, PF08083 from PFAM, PF08082 from PFAM, PF01398 from PFAM, PF08084 from PFAM. There is a conserved LILR sequence motif. The domain is a selenomethionine domain in a subunit of the spliceosome. The function of PRP8 domain IV is believed to be interaction with the splicosomal core. ; PDB: 3E66_A 3E9P_A 3SBT_A 3E9O_A 3SBG_A 3LRU_A 3E9L_A 3ENB_A.
Probab=26.59 E-value=61 Score=25.06 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=15.1
Q ss_pred CCCCeEEEEeCCCCeEEeEec
Q psy15750 53 ISVDTVLTLDKSTGLLIDAWG 73 (115)
Q Consensus 53 i~~~~I~vfdp~~G~~l~~~G 73 (115)
+-+++|++|+|.+|.+..+..
T Consensus 43 piNG~ifIfnP~TGqLflKii 63 (231)
T PF12134_consen 43 PINGAIFIFNPRTGQLFLKII 63 (231)
T ss_dssp EE-EEEEEE-TTT-EEEEEEE
T ss_pred cccceEEEEeCCCCcEEEEEE
Confidence 345899999999999988765
No 142
>KOG0296|consensus
Probab=25.37 E-value=1.9e+02 Score=24.14 Aligned_cols=47 Identities=13% Similarity=0.204 Sum_probs=29.7
Q ss_pred CCeEEEEeCCCCeEEeEecCC-CccCceeEEEc----------cCCCEEEEeCCCCEEE
Q psy15750 55 VDTVLTLDKSTGLLIDAWGKN-KFYMPHGCTVD----------NKGFIWLTDVALHQVF 102 (115)
Q Consensus 55 ~~~I~vfdp~~G~~l~~~G~g-~f~~P~Gi~vd----------~~g~I~VtD~~~h~V~ 102 (115)
.+.|++|||++|..+.+.+.. +..+| ++... .++.+++.......|.
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~-~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv 268 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELP-CISLNLAGSTLTKGNSEGVACGVNNGSGKVV 268 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCC-ccccccccceeEeccCCccEEEEccccceEE
Confidence 478999999999999988732 22233 43333 4566666655555544
No 143
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=25.07 E-value=1e+02 Score=23.61 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=22.8
Q ss_pred EEeCCCCeEEeEecCCC---ccCc---eeEEEccCCCEEEE
Q psy15750 60 TLDKSTGLLIDAWGKNK---FYMP---HGCTVDNKGFIWLT 94 (115)
Q Consensus 60 vfdp~~G~~l~~~G~g~---f~~P---~Gi~vd~~g~I~Vt 94 (115)
.+|+ +|.++..-|... +.+| ..+.|+++|.|+..
T Consensus 121 ~~d~-~G~Lvt~~G~~vl~~I~vp~~~~~~~i~~dG~i~~~ 160 (262)
T PRK12691 121 NRSA-DGQIVTSDGYPVQPGITIPQDATSITINASGQVSAT 160 (262)
T ss_pred eECC-CCCEECCCCCEeEeeeecCCCCceEEECCCCEEEEE
Confidence 4566 676665555433 4456 47899999999874
No 144
>KOG1446|consensus
Probab=24.17 E-value=3.9e+02 Score=21.65 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=40.2
Q ss_pred ccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEecC--CCccCceeEEEccCCCEEEEeCCCCEEEEeCC
Q psy15750 35 MDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGK--NKFYMPHGCTVDNKGFIWLTDVALHQVFKTPY 106 (115)
Q Consensus 35 ~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~G~--g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~ 106 (115)
|-.+-|+.++|++.=... .+-+.++|..+|.++.++-. +....|-.-+--||++..++...+.++..|..
T Consensus 190 w~~l~FS~dGK~iLlsT~--~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 190 WTDLEFSPDGKSILLSTN--ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred eeeeEEcCCCCEEEEEeC--CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence 334445666654442222 24567777778887777652 34556634444578877777666555555543
No 145
>KOG0282|consensus
Probab=24.13 E-value=2.4e+02 Score=24.33 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=36.0
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEccCC-CEEEEeCCCCEEEEeCC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKG-FIWLTDVALHQVFKTPY 106 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g-~I~VtD~~~h~V~~f~~ 106 (115)
..+..||.++|+.+.++-.+. .|-.+.--+++ |++++...+.+|..+|-
T Consensus 280 ~~lKlwDtETG~~~~~f~~~~--~~~cvkf~pd~~n~fl~G~sd~ki~~wDi 329 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFHLDK--VPTCVKFHPDNQNIFLVGGSDKKIRQWDI 329 (503)
T ss_pred eeeeeeccccceEEEEEecCC--CceeeecCCCCCcEEEEecCCCcEEEEec
Confidence 357788888898888766544 34345555666 99999888999988875
No 146
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=23.97 E-value=95 Score=21.91 Aligned_cols=37 Identities=19% Similarity=0.102 Sum_probs=24.5
Q ss_pred CceeEEEccCCCEEEE-eCCCCEEE-EeCCCC---CCCcccC
Q psy15750 79 MPHGCTVDNKGFIWLT-DVALHQVF-KTPYTY---NFGDMTV 115 (115)
Q Consensus 79 ~P~Gi~vd~~g~I~Vt-D~~~h~V~-~f~~~G---~f~~~~~ 115 (115)
.-||.--.-||+||+. +...|.|+ +=.|.| -|.|+|+
T Consensus 45 ~~~G~lE~vDg~i~IGs~q~~~sV~i~gTPsgnnv~F~PYTl 86 (145)
T TIGR02542 45 YVHGTLEQVDGNIRIGSGQTPASVRIQGTPSGNNVIFPPYTL 86 (145)
T ss_pred eeeeehhhccCcEEEccCCCcccEEEecCCCCCceecCceee
Confidence 4456555568999997 66678887 444554 3666664
No 147
>KOG1645|consensus
Probab=23.88 E-value=3e+02 Score=23.40 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=31.8
Q ss_pred CeEEEEeCCCCeEEeEecCCCccCceeEEEc--cCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750 56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVD--NKGFIWLTDVALHQVFKTPYTYNF 110 (115)
Q Consensus 56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd--~~g~I~VtD~~~h~V~~f~~~G~f 110 (115)
+.|.++|-++-..+..+..+ ..+...+-| ..++||-.| .|..|+.||..-..
T Consensus 216 nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~IYaGl-~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 216 NKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHVIYAGL-QNGMVLVYDMRQPE 269 (463)
T ss_pred ceEEEEecccceeeeheecc--CCceeeeeccCCcceeEEec-cCceEEEEEccCCC
Confidence 45667766444555555543 466666766 455666655 57788888865433
No 148
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=23.85 E-value=1.6e+02 Score=22.63 Aligned_cols=36 Identities=17% Similarity=0.343 Sum_probs=24.3
Q ss_pred EEEEeCCCCeEEeEecC------CCccCc---eeEEEccCCCEEEE
Q psy15750 58 VLTLDKSTGLLIDAWGK------NKFYMP---HGCTVDNKGFIWLT 94 (115)
Q Consensus 58 I~vfdp~~G~~l~~~G~------g~f~~P---~Gi~vd~~g~I~Vt 94 (115)
-+.+|+ +|.|+..-|. +.+.+| ..++|+++|.|++.
T Consensus 110 ~F~~d~-~G~Lvt~~G~~vlg~~gpI~lp~~~~~i~I~~dG~I~~~ 154 (253)
T PRK12689 110 ALEINA-QGQLVTSDGYPVLGTGGPITFQPTDTGIAISPDGTVSVN 154 (253)
T ss_pred ceEECC-CCCEEcCCCCEeecCCCCeEeCCCCCcEEECCCCeEEEe
Confidence 345676 7777665453 245566 36999999999874
No 149
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=23.68 E-value=1.6e+02 Score=22.57 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=24.2
Q ss_pred EEEEeCCCCeEEeEecC------C-CccCce--eEEEccCCCEEEE
Q psy15750 58 VLTLDKSTGLLIDAWGK------N-KFYMPH--GCTVDNKGFIWLT 94 (115)
Q Consensus 58 I~vfdp~~G~~l~~~G~------g-~f~~P~--Gi~vd~~g~I~Vt 94 (115)
=+.+|+ +|.++..=|. + .+.+|. .+.|++||.|++.
T Consensus 117 ~F~~d~-~G~Lvt~~G~~vlg~~g~pI~lp~~~~v~I~~dG~I~~~ 161 (257)
T PRK12819 117 SFTLNS-DRYLQTASGAFVMGENNERIRIPEGAKVAVQADGTLYDA 161 (257)
T ss_pred CeeECC-CCCEEcCCCCEEecCCCCceEeCCCCcEEEcCCCEEEEE
Confidence 345566 6776655442 2 466673 6999999999885
No 150
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=23.48 E-value=3.4e+02 Score=26.53 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=42.0
Q ss_pred CeeeeeEEEEEecceeeEEEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEecCCCccCc
Q psy15750 1 MLVGIPIGITFCDSIGYVARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMP 80 (115)
Q Consensus 1 ~~~~~~~~~~~~d~v~~~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~G~g~f~~P 80 (115)
+|.|.|+.++|.=+--+.++| +|...+-++.+- .-+..+ -....+.-...-+.|. .|++++.
T Consensus 1313 ~L~a~pv~ftI~~~q~e~~kV---~~~n~~~~gsv~---l~k~d~--~~~~~LegA~F~l~de-~g~ilke--------- 1374 (1531)
T COG4932 1313 ILDATPVNFTIEFNQEEAVKV---TKENDAKTGSVV---LTKLDS--SSGVTLEGAEFELLDE-EGNILKE--------- 1374 (1531)
T ss_pred EEeecceeEEEEecccccEEE---EEeeccccccEE---EEEeec--ccCccccCcEEEEEcc-cCceehh---------
Confidence 467888888887666555554 455555444411 111111 2222333334445565 6666665
Q ss_pred eeEEEccCCCEEEEeCC
Q psy15750 81 HGCTVDNKGFIWLTDVA 97 (115)
Q Consensus 81 ~Gi~vd~~g~I~VtD~~ 97 (115)
|++.|.+|.+-|.|-+
T Consensus 1375 -~l~t~~nG~l~v~dLa 1390 (1531)
T COG4932 1375 -GLVTDENGQLLVDDLA 1390 (1531)
T ss_pred -cceeCCCCcEEEeecC
Confidence 6666666666666554
No 151
>COG4895 Uncharacterized conserved protein [Function unknown]
Probab=23.18 E-value=24 Score=21.57 Aligned_cols=31 Identities=32% Similarity=0.386 Sum_probs=19.6
Q ss_pred EeCCCCeEEeEecCC----CccCceeEEEc-cCCCE
Q psy15750 61 LDKSTGLLIDAWGKN----KFYMPHGCTVD-NKGFI 91 (115)
Q Consensus 61 fdp~~G~~l~~~G~g----~f~~P~Gi~vd-~~g~I 91 (115)
-|.++|++-+...+. .-.-||||.+. .+|.+
T Consensus 21 qDQkTGKlTrGvVk~iLT~S~~HPHGIKVrL~dGqv 56 (63)
T COG4895 21 QDQKTGKLTRGVVKAILTRSPSHPHGIKVRLTDGQV 56 (63)
T ss_pred ccccCCcchhHHHHHHHhCCCCCCCceEEEeecCcc
Confidence 355688875544442 34479999986 55543
No 152
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=22.08 E-value=90 Score=24.13 Aligned_cols=35 Identities=20% Similarity=0.472 Sum_probs=23.8
Q ss_pred EEEeCCCCeEEeEecCCC---ccCc-----eeEEEccCCCEEEE
Q psy15750 59 LTLDKSTGLLIDAWGKNK---FYMP-----HGCTVDNKGFIWLT 94 (115)
Q Consensus 59 ~vfdp~~G~~l~~~G~g~---f~~P-----~Gi~vd~~g~I~Vt 94 (115)
+.+|+ +|.|+..-|... +.+| ..+.|+++|.|++.
T Consensus 120 F~~d~-~G~Lvt~~G~~vl~~I~lp~~~~~~~i~I~~dG~I~~~ 162 (264)
T PRK12816 120 FKIDA-NGQLVTSNGYRLLPEIIFPENYILNSITISEEGIVSVK 162 (264)
T ss_pred eeECC-CCCEECCCCCEecceeecCCCcccccEEECCCCeEEEe
Confidence 34566 677666555433 4466 46899999999885
No 153
>KOG2919|consensus
Probab=22.05 E-value=1.9e+02 Score=24.01 Aligned_cols=58 Identities=16% Similarity=0.113 Sum_probs=40.0
Q ss_pred CCCeEEEEeCCCCeEEeEecC----CCccCceeEEEccCCCEEEE-eCCCCEEEEeCCCCCCC
Q psy15750 54 SVDTVLTLDKSTGLLIDAWGK----NKFYMPHGCTVDNKGFIWLT-DVALHQVFKTPYTYNFG 111 (115)
Q Consensus 54 ~~~~I~vfdp~~G~~l~~~G~----g~f~~P~Gi~vd~~g~I~Vt-D~~~h~V~~f~~~G~f~ 111 (115)
+...|.++|..+|++..++-. .++.-.|.++..+||.-..+ +...-+||-..+-|++-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDC 193 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCC
Confidence 347899999999999887663 35667889999999976666 44444444443445543
No 154
>cd08047 TAF7 TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving
Probab=21.84 E-value=63 Score=23.17 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=29.4
Q ss_pred eEEeecccccCCCCCCCCCeEEEEeCCCCe-------EEeEecCCCccCceeEEE
Q psy15750 38 LYCSIEESESGTKRPISVDTVLTLDKSTGL-------LIDAWGKNKFYMPHGCTV 85 (115)
Q Consensus 38 ~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~-------~l~~~G~g~f~~P~Gi~v 85 (115)
.+...+++..|+..+|.+ -++++++.+-+ .........+.+|||++=
T Consensus 63 s~KT~D~k~~yKtaDI~Q-Mliv~~~~~~~~~~~~~~~~~~~~~~~~~~~hGLTP 116 (162)
T cd08047 63 SHKTLDKKNLYKTADISQ-MLIVYEPDDSEKEAKEAKLDKKDKPKKFEYPHGLTP 116 (162)
T ss_pred eeeccccCceEEecChhh-EEEEecCCCchhhhhhccccccccccccccCCCCCc
Confidence 346677776788888885 67777651111 112233457889999874
No 155
>PF12860 PAS_7: PAS fold
Probab=21.68 E-value=86 Score=20.01 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=12.7
Q ss_pred CceeEEE-ccCCCEEEEeCC
Q psy15750 79 MPHGCTV-DNKGFIWLTDVA 97 (115)
Q Consensus 79 ~P~Gi~v-d~~g~I~VtD~~ 97 (115)
+|+|+++ |++|.+......
T Consensus 4 l~~Gv~v~D~~~rl~~~N~~ 23 (115)
T PF12860_consen 4 LPQGVAVFDSDGRLVFWNQR 23 (115)
T ss_pred cCceEEEEcCCCeEEeEcHH
Confidence 6777776 577777665444
No 156
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=21.58 E-value=79 Score=22.25 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=23.2
Q ss_pred EEEEeCCCCeEEeEecCCCccCceeEEEccCCCEE
Q psy15750 58 VLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIW 92 (115)
Q Consensus 58 I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~ 92 (115)
.+.+|+ ++++.+.++ ....|+-+-+|++|.|.
T Consensus 120 ~v~~D~-~~~~~~~~~--v~~~P~~~~id~~G~i~ 151 (173)
T TIGR00385 120 AILIDP-NGKLGLDLG--VYGAPETFLVDGNGVIL 151 (173)
T ss_pred eEEECC-CCchHHhcC--CeeCCeEEEEcCCceEE
Confidence 345787 777777665 35579889999999864
No 157
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=21.54 E-value=1.4e+02 Score=22.92 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=23.4
Q ss_pred EEEeCCCCeEEeEecCC---CccCc---eeEEEccCCCEEEE
Q psy15750 59 LTLDKSTGLLIDAWGKN---KFYMP---HGCTVDNKGFIWLT 94 (115)
Q Consensus 59 ~vfdp~~G~~l~~~G~g---~f~~P---~Gi~vd~~g~I~Vt 94 (115)
+.+|. +|.|+..=|.. .+.+| ..++|+++|.|++.
T Consensus 120 F~~d~-~G~Lvt~~G~~Vl~pI~vp~~~~~~~I~~dG~I~~~ 160 (260)
T PRK12694 120 FQTNA-QGQLVTSSGYPLQPAITIPQNATSLTIGKDGTVSVT 160 (260)
T ss_pred ceECC-CCCEECCCCCEeccceecCCCcceeEECCCCeEEEe
Confidence 34566 67766554532 24466 46899999999884
No 158
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=20.95 E-value=1.4e+02 Score=22.94 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=24.0
Q ss_pred EEEeCCCCeEEeEecCC------CccCc--eeEEEccCCCEEEE
Q psy15750 59 LTLDKSTGLLIDAWGKN------KFYMP--HGCTVDNKGFIWLT 94 (115)
Q Consensus 59 ~vfdp~~G~~l~~~G~g------~f~~P--~Gi~vd~~g~I~Vt 94 (115)
+.+|+ +|.++..-|.. .+.+| ..+.|+++|.|++.
T Consensus 105 F~~d~-~G~Lvt~~G~~vlg~~gpI~lp~~~~i~I~~dG~I~~~ 147 (246)
T PRK12640 105 LQVDA-NGQLRTANGLPVLGDGGPIAVPPGAKITIGADGTISAL 147 (246)
T ss_pred eeECC-CCCEEcCCCCCccCCCcceecCCCCCEEECCCCEEEEe
Confidence 34566 77776655532 34566 46899999999885
No 159
>PF03166 MH2: MH2 domain; InterPro: IPR001132 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth []. The dwarfin family also includes the Drosophila protein MAD that is required for the function of decapentaplegic (DPP) and may play a role in DPP signalling. Drosophila Mad binds to DNA and directly mediates activation of vestigial by Dpp []. This domain is also found in nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF). This entry represents the SMAD (Mothers against decapentaplegic (MAD) homologue) (also called MH2 for MAD homology 2) domain found at the carboxy terminus of MAD related proteins such as Smads. This domain is separated from the MH1 domain by a non-conserved linker region. The MH2 domain mediates interaction with a wide variety of proteins and provides specificity and selectivity to Smad function and also is critical for mediating interactions in Smad oligomers. Unlike MH1, MH2 does not bind DNA. The well-studied MH2 domain of Smad4 is composed of five alpha helices and three loops enclosing a beta sandwich. Smads are involved in the propagation of TGF-beta signals by direct association with the TGF-beta receptor kinase which phosphorylates the last two Ser of a conserved 'SSXS' motif located at the C terminus of MH2 [, , ].; GO: 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1MK2_A 1U7F_A 1MJS_A 1KHU_A 1DD1_C 1G88_A 1U7V_B 1MR1_B 1YGS_A 3DIT_B ....
Probab=20.73 E-value=1.4e+02 Score=21.57 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=18.3
Q ss_pred CccCceeEEE--ccCCCEEEEeCCCCEEEEeCC
Q psy15750 76 KFYMPHGCTV--DNKGFIWLTDVALHQVFKTPY 106 (115)
Q Consensus 76 ~f~~P~Gi~v--d~~g~I~VtD~~~h~V~~f~~ 106 (115)
.+.. |+.+ +.+|+||+.-...+-||+-++
T Consensus 63 ~IG~--Gi~l~~~~~G~V~l~n~s~~pVFVqS~ 93 (181)
T PF03166_consen 63 HIGK--GIKLSYEEDGNVWLYNRSDSPVFVQSP 93 (181)
T ss_dssp TCTT---EEEEEETTTEEEEEE-SSS-EEEE-H
T ss_pred eecC--cEEEEEecCCeEEEEECCCCCEEEccC
Confidence 4444 5555 458999999999999997654
No 160
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=20.42 E-value=74 Score=20.74 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=22.7
Q ss_pred EEEEeCCCCeEEeEecCCCccCceeEEEccCCCEE
Q psy15750 58 VLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIW 92 (115)
Q Consensus 58 I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~ 92 (115)
.+..|+ .+++...++- ..+|+-+-+|++|+|-
T Consensus 83 ~~~~D~-~~~~~~~~~v--~~~P~~~~ld~~G~v~ 114 (127)
T cd03010 83 AVGFDP-DGRVGIDLGV--YGVPETFLIDGDGIIR 114 (127)
T ss_pred eEEECC-cchHHHhcCC--CCCCeEEEECCCceEE
Confidence 345677 6776666653 4589899999999864
No 161
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.29 E-value=1.7e+02 Score=19.53 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=19.1
Q ss_pred CeEEeEecCCCccCceeEEEccCCCEEEE-eC
Q psy15750 66 GLLIDAWGKNKFYMPHGCTVDNKGFIWLT-DV 96 (115)
Q Consensus 66 G~~l~~~G~g~f~~P~Gi~vd~~g~I~Vt-D~ 96 (115)
|..++..+.+.-.--..|.-|.+|++||- |+
T Consensus 12 G~avrYvnTgTvgrV~dIkkdEdG~~WV~Lds 43 (97)
T COG4014 12 GDAVRYVNTGTVGRVVDIKKDEDGDIWVVLDS 43 (97)
T ss_pred cceEEEeecCceeeEEEEEeecCCceEEEEec
Confidence 33344444444444446677889999997 55
No 162
>smart00524 DWB Domain B in dwarfin family proteins.
Probab=20.15 E-value=1.3e+02 Score=22.11 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=22.0
Q ss_pred ceeEEEc-cCCCEEEEeCCCCEEEEeCCC
Q psy15750 80 PHGCTVD-NKGFIWLTDVALHQVFKTPYT 107 (115)
Q Consensus 80 P~Gi~vd-~~g~I~VtD~~~h~V~~f~~~ 107 (115)
.+|+.+. .+|+||+.-...|-||+-++.
T Consensus 61 G~Gv~L~~~~g~Vw~~~~s~~~VFVqS~~ 89 (171)
T smart00524 61 GKGVQLSYENGDVWLYNRSDSPIFVQSPY 89 (171)
T ss_pred cCceEEEEeCCeEEEEEcCCCCeEEcCCC
Confidence 3477776 569999999999999977665
No 163
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=20.12 E-value=83 Score=22.47 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=23.8
Q ss_pred EEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEE
Q psy15750 58 VLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLT 94 (115)
Q Consensus 58 I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~Vt 94 (115)
+.++|+ ++++...|| ....|+-+-+|++|.|.-.
T Consensus 125 ~~~~D~-~~~~~~~~g--v~~~P~t~vid~~G~i~~~ 158 (185)
T PRK15412 125 LSLFDG-DGMLGLDLG--VYGAPETFLIDGNGIIRYR 158 (185)
T ss_pred eEEEcC-CccHHHhcC--CCcCCeEEEECCCceEEEE
Confidence 456777 777666665 4567988888988886543
Done!