RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15750
         (115 letters)



>gnl|CDD|110440 pfam01436, NHL, NHL repeat.  The NHL (NCL-1, HT2A and LIN-41)
           repeat is found in multiple tandem copies. It is about
           40 residues long and resembles the WD repeat pfam00400.
           The repeats have a catalytic activity in bovine PAM
           (peptidyl-glycine alpha-amidating monooxygenase),
           proteolysis has shown that the
           Peptidyl-alpha-hydroxyglycine alpha-amidating lyase
           (PAL) activity is localised to the repeats. Human E3
           ubiquitin-protein ligase TRIM32 interacts with the
           activation domain of Tat. This interaction is me diated
           by the NHL repeats.
          Length = 28

 Score = 36.2 bits (85), Expect = 1e-04
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 77  FYMPHGCTVDNKGFIWLTDVALHQVFK 103
           F  PHG  VD+ G +++ D   H+V  
Sbjct: 1   FNRPHGVAVDSDGDVYVADSENHRVQV 27


>gnl|CDD|212855 cd11922, SH3_Sorbs1_2, Second Src Homology 3 domain of Sorbin and
          SH3 domain containing 1 (Sorbs1), also called ponsin.
          Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl
          associated protein). It is an adaptor protein
          containing one sorbin homology (SoHo) and three SH3
          domains. It binds Cbl and plays a major role in
          regulating the insulin signaling pathway by enhancing
          insulin-induced phosphorylation of Cbl. Sorbs1, like
          vinexin, localizes at cell-ECM and cell-cell adhesion
          sites where it binds vinculin, paxillin, and afadin. It
          may function in the control of cell motility. Other
          interaction partners of Sorbs1 include c-Abl, Sos,
          flotillin, Grb4, ataxin-7, filamin C, among others. SH3
          domains are protein interaction domains that bind to
          proline-rich ligands with moderate affinity and
          selectivity, preferentially to PxxP motifs. They play
          versatile and diverse roles in the cell including the
          regulation of enzymes, changing the subcellular
          localization of signaling pathway components, and
          mediating the formation of multiprotein complex
          assemblies.
          Length = 58

 Score = 26.1 bits (57), Expect = 1.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 17 YVARVDGTSMQPVCPSTYMDTL 38
          Y  R+ GTS Q + P TY+D +
Sbjct: 36 YEGRIPGTSRQGIFPITYVDVI 57


>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
          Length = 378

 Score = 26.9 bits (60), Expect = 2.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 41  SIEESESGTKRPISVDTVLTLDKSTG 66
            +EE  +G  + ++VDT +  D+  G
Sbjct: 122 DLEECATGVTKQVTVDTAVLCDRCHG 147


>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase;
           Provisional.
          Length = 580

 Score = 26.6 bits (60), Expect = 3.3
 Identities = 10/14 (71%), Positives = 10/14 (71%), Gaps = 1/14 (7%)

Query: 93  LTDVALHQVFKTPY 106
           LT VALH VF TP 
Sbjct: 55  LT-VALHYVFDTPK 67


>gnl|CDD|236187 PRK08207, PRK08207, coproporphyrinogen III oxidase; Provisional.
          Length = 488

 Score = 26.4 bits (59), Expect = 4.0
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 23/69 (33%)

Query: 3   VGIPIGITFCDSI------------GYVARVDGTSMQPVCPSTYMDTLYCSIEE-SESGT 49
           V I IGI FC +             GY   V+           Y++ L+  IEE  +   
Sbjct: 164 VSIYIGIPFCPTRCLYCSFPSYPIKGYKGLVE----------PYLEALHYEIEEIGKYLK 213

Query: 50  KRPISVDTV 58
           ++ + + T+
Sbjct: 214 EKGLKITTI 222


>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase;
           Provisional.
          Length = 641

 Score = 25.8 bits (57), Expect = 6.7
 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)

Query: 89  GFIWLTDVALHQVFKTPY 106
           G + LT VALH VF TP 
Sbjct: 53  GVVELT-VALHAVFNTPK 69


>gnl|CDD|225752 COG3211, PhoX, Predicted phosphatase [General function prediction
           only].
          Length = 616

 Score = 25.9 bits (57), Expect = 6.7
 Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 1/22 (4%)

Query: 75  NKFYMPHGCTVDNKGFIWL-TD 95
           N F  P     D  G +W+ TD
Sbjct: 497 NWFNSPDNLAFDPWGRLWIQTD 518


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0909    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,693,205
Number of extensions: 451838
Number of successful extensions: 359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 15
Length of query: 115
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 36
Effective length of database: 7,433,636
Effective search space: 267610896
Effective search space used: 267610896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (23.9 bits)