RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15750
         (115 letters)



>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
           lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
           basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
          Length = 329

 Score = 67.1 bits (164), Expect = 1e-14
 Identities = 27/56 (48%), Positives = 37/56 (66%)

Query: 48  GTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
               PI  DT+L +D +   ++ + GKN FY+PHG ++D  G  W+TDVALHQVFK
Sbjct: 61  RGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFK 116



 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 58  VLTLDKSTGLLIDAWGKN--KFYMPHGCTVDNKGFIWLTDVALHQVFK 103
              ++ S+G +ID +      F MPH       G +++ D   + V+K
Sbjct: 270 GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWK 317



 Score = 24.8 bits (54), Expect = 9.4
 Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 2/32 (6%)

Query: 72  WGKNKFYM--PHGCTVDNKGFIWLTDVALHQV 101
           W           G  +D+K  + +     H  
Sbjct: 16  WPGVYLLPGQVSGVALDSKNNLVIFHRGDHVW 47


>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
           beta-propeller, translation; 1.95A {Drosophila
           melanogaster} SCOP: b.68.9.1
          Length = 286

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 64  STGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
             G  +  +G      P G TVDNKG I + +  + +V  
Sbjct: 107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVII 146



 Score = 32.5 bits (75), Expect = 0.018
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 73  GKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
            + +F  P G  V+ +  I + D   H++  
Sbjct: 25  MEGQFTEPSGVAVNAQNDIIVADTNNHRIQI 55



 Score = 31.8 bits (73), Expect = 0.029
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 64  STGLLIDAWGKNK-FYMPHGCTVDNKGFIWLTDVALHQVFK 103
             G ++  +G +K    P+G  V++K  I+++D   H V  
Sbjct: 149 QNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKV 189



 Score = 26.8 bits (60), Expect = 1.8
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 64  STGLLIDAWGKN-KFYMPHGCTVDNKGFIWLTDVALH---QVF 102
             G  +   G       P G  +++ G I + D   +    +F
Sbjct: 192 YEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF 234



 Score = 24.5 bits (54), Expect = 9.4
 Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 1/33 (3%)

Query: 64  STGLLIDAWG-KNKFYMPHGCTVDNKGFIWLTD 95
             G LI A   K K        + + G + L  
Sbjct: 236 QDGQLISALESKVKHAQCFDVALMDDGSVVLAS 268


>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
           genomics, PSI, protein structure initiative; 1.80A
           {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
          Length = 270

 Score = 33.4 bits (77), Expect = 0.008
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 64  STGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           +               P G  VDN G +++TD   ++V K
Sbjct: 136 AGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK 175



 Score = 31.1 bits (71), Expect = 0.057
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 64  STGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           +          +    P G  VD +G +++ D   ++V K
Sbjct: 94  AGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVK 133



 Score = 30.3 bits (69), Expect = 0.097
 Identities = 10/34 (29%), Positives = 13/34 (38%)

Query: 72  WGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTP 105
              N  Y P G  VD  G +++TD     V    
Sbjct: 61  LPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAA 94



 Score = 29.9 bits (68), Expect = 0.15
 Identities = 6/40 (15%), Positives = 12/40 (30%)

Query: 64  STGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           +               P    VD+   +++ D    +V K
Sbjct: 220 AGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVK 259



 Score = 29.1 bits (66), Expect = 0.24
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 73  GKNKFYMPHGCTVDNKGFIWLTDVALHQV 101
           G +    P G  VD+ G +++T   ++  
Sbjct: 19  GIDFRLSPSGVAVDSAGNVYVTSEGMYGR 47



 Score = 27.2 bits (61), Expect = 1.2
 Identities = 9/40 (22%), Positives = 15/40 (37%)

Query: 64  STGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           +               P G  VD  G +++T+   +QV K
Sbjct: 178 AESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK 217


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 32.9 bits (74), Expect = 0.017
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 18/90 (20%)

Query: 31  PSTYMDTLYCSIEESESGTKRPISVDTVLTL--DKSTGLLIDAWGKNKFYMPHGCTVDNK 88
           P+  +  ++  + +S+        V  V+      S   L++   K          ++ K
Sbjct: 388 PTILLSLIWFDVIKSD--------VMVVVNKLHKYS---LVEKQPKESTISIPSIYLELK 436

Query: 89  GFIWLTDVALHQV----FKTPYTYNFGDMT 114
             +   + ALH+     +  P T++  D+ 
Sbjct: 437 VKL-ENEYALHRSIVDHYNIPKTFDSDDLI 465


>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
           {Staphylococcus cohnii}
          Length = 300

 Score = 28.0 bits (63), Expect = 0.60
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 64  STGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           +TG L +         P G T  N G +W  ++  +++ +
Sbjct: 174 NTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR 213



 Score = 27.3 bits (61), Expect = 1.1
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 79  MPHGCTVDNKGFIWLTDVALHQVFK 103
                 V + G IW T+   +++ K
Sbjct: 63  KVMCLIVSSLGDIWFTENGANKIGK 87



 Score = 26.5 bits (59), Expect = 2.2
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 80  PHGCTVDNKGFIWLTDVALHQVFK 103
           P+G T    G +W T    +++  
Sbjct: 22  PYGITSSEDGKVWFTQHKANKISS 45



 Score = 25.0 bits (55), Expect = 6.2
 Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 56  DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           D +  L  + G + +    NK   P   T+ +   +W T+   + + +
Sbjct: 125 DRIGKLT-ADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171



 Score = 25.0 bits (55), Expect = 7.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 80  PHGCTVDNKGFIWLTDVALHQVFK 103
           P+G T    G IW T +   ++ K
Sbjct: 106 PYGITEGLNGDIWFTQLNGDRIGK 129


>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
           resistance, E mechanism, virginiamycin B hydrolase
           streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
           PDB: 2z2o_A 2z2p_A*
          Length = 299

 Score = 26.9 bits (60), Expect = 1.4
 Identities = 9/40 (22%), Positives = 19/40 (47%)

Query: 64  STGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
             G++ +    N    P+G T    G IW T++  +++ +
Sbjct: 85  KKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGR 124



 Score = 26.9 bits (60), Expect = 1.5
 Identities = 5/24 (20%), Positives = 13/24 (54%)

Query: 80  PHGCTVDNKGFIWLTDVALHQVFK 103
               T+ + G +W T+ A +++ +
Sbjct: 59  VMCLTISSDGEVWFTENAANKIGR 82



 Score = 26.1 bits (58), Expect = 2.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 80  PHGCTVDNKGFIWLTDVALHQVFK 103
           P+G TV +KG +W+T    + +  
Sbjct: 17  PYGITVSDKGKVWITQHKANMISC 40



 Score = 25.8 bits (57), Expect = 3.6
 Identities = 6/40 (15%), Positives = 16/40 (40%)

Query: 64  STGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           ++G + +         PH  T      +W T+   +++ +
Sbjct: 211 TSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGR 250



 Score = 25.8 bits (57), Expect = 4.3
 Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 56  DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           + +  +    G + +    NK   P   T+ +   +W T+   + + +
Sbjct: 120 NRIGRIT-DDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR 166



 Score = 25.4 bits (56), Expect = 5.3
 Identities = 5/24 (20%), Positives = 12/24 (50%)

Query: 80  PHGCTVDNKGFIWLTDVALHQVFK 103
           P G T  N   +W  ++  +++ +
Sbjct: 185 PVGITKGNDDALWFVEIIGNKIGR 208


>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
           transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
          Length = 629

 Score = 27.1 bits (61), Expect = 1.5
 Identities = 5/14 (35%), Positives = 7/14 (50%), Gaps = 1/14 (7%)

Query: 93  LTDVALHQVFKTPY 106
           +   ALH V  +P 
Sbjct: 61  II-TALHYVLDSPR 73


>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
           transferase; HET: TDP; 2.40A {Escherichia coli}
          Length = 621

 Score = 27.1 bits (61), Expect = 1.6
 Identities = 9/14 (64%), Positives = 11/14 (78%), Gaps = 1/14 (7%)

Query: 93  LTDVALHQVFKTPY 106
           LT VALH V+ TP+
Sbjct: 59  LT-VALHYVYNTPF 71


>3kv0_A HET-C2; GLTP, glycolipid transfer protein, transport protein;
          HET: MLY; 1.90A {Podospora anserina}
          Length = 209

 Score = 25.9 bits (56), Expect = 3.8
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 27 QPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGL--LIDAWGKNKF 77
          Q    +T+++T   S  +     +   ++ T   L+ +  L  + D  G   F
Sbjct: 9  QIPAGATFLETFXXSFVDVPIDAEXGNAISTAEFLEAAESLTTMFDVLGSIAF 61


>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
           joint center for ST genomics, JCSG, protein structure
           initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
           SCOP: b.68.6.3
          Length = 306

 Score = 25.3 bits (55), Expect = 4.9
 Identities = 3/25 (12%), Positives = 8/25 (32%)

Query: 79  MPHGCTVDNKGFIWLTDVALHQVFK 103
                  D +G ++      + V +
Sbjct: 213 NIDDFAFDVEGNLYGATHIYNSVVR 237


>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
           of unknown function structural genomics; HET: MSE; 1.70A
           {Bacteroides thetaiotaomicron vpi-5482}
          Length = 409

 Score = 25.7 bits (56), Expect = 4.9
 Identities = 7/50 (14%), Positives = 11/50 (22%)

Query: 54  SVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           +V T+       G         KF    G        +        +V  
Sbjct: 107 NVSTISGSASKDGNDDGDLASAKFKYMWGIAAVGNNTVLAYQRDDPRVRL 156


>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain;
           oxidoreductase, allosteric regulation, substrate
           specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB:
           1h79_A* 1h7a_A* 1h78_A 1hk8_A*
          Length = 605

 Score = 25.0 bits (54), Expect = 8.8
 Identities = 6/31 (19%), Positives = 11/31 (35%)

Query: 3   VGIPIGITFCDSIGYVARVDGTSMQPVCPST 33
            G+ + +  C + G    +  T    VC   
Sbjct: 534 FGVNMPVDKCFTCGSTHEMTPTENGFVCSIC 564


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0573    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,759,826
Number of extensions: 86742
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 44
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)