RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15750
         (115 letters)



>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 279

 Score = 30.4 bits (67), Expect = 0.037
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 73  GKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
            + +F  P G  V+ +  I + D   H++  
Sbjct: 18  MEGQFTEPSGVAVNAQNDIIVADTNNHRIQI 48


>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 260

 Score = 26.7 bits (57), Expect = 0.68
 Identities = 6/38 (15%), Positives = 11/38 (28%)

Query: 66  GLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
                         P    VD+   +++ D    +V K
Sbjct: 212 STTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVK 249



 Score = 25.2 bits (53), Expect = 2.2
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 73 GKNKFYMPHGCTVDNKGFIWLTDVALH 99
          G +    P G  VD+ G +++T   ++
Sbjct: 9  GIDFRLSPSGVAVDSAGNVYVTSEGMY 35


>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
           NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
          Length = 561

 Score = 24.1 bits (52), Expect = 6.2
 Identities = 6/28 (21%), Positives = 11/28 (39%)

Query: 4   GIPIGITFCDSIGYVARVDGTSMQPVCP 31
           G+ + +  C + G    +  T    VC 
Sbjct: 510 GVNMPVDKCFTCGSTHEMTPTENGFVCS 537


>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 743

 Score = 23.6 bits (51), Expect = 7.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 89  GFIWLTDVALH 99
           G +WL+D A H
Sbjct: 278 GGLWLSDTAHH 288


>d1x9ya2 d.17.1.4 (A:41-211) Staphopain B, prodomain {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 171

 Score = 23.0 bits (49), Expect = 9.0
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 86  DNKGFIWLTDVALHQVFKTPYTYNFGD 112
           D KGF +  D  +  V  TP   N  +
Sbjct: 121 DEKGFYFEEDGKVRLVKATPLANNIKE 147


>d2f9ha1 b.161.1.1 (A:3-123) PTS system, IIa component (PTSIIA)
          {Enterococcus faecalis [TaxId: 1351]}
          Length = 121

 Score = 23.2 bits (50), Expect = 9.0
 Identities = 4/35 (11%), Positives = 11/35 (31%), Gaps = 1/35 (2%)

Query: 39 YCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWG 73
          +  I+      +  ++    L +  +    I   G
Sbjct: 36 HAVIQSFPEKDQVTLAEGDHLKIGDTN-YTITKVG 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0549    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 438,412
Number of extensions: 16992
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 8
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)