BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15752
(110 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H3H1|MOD5_HUMAN tRNA dimethylallyltransferase, mitochondrial OS=Homo sapiens
GN=TRIT1 PE=1 SV=1
Length = 467
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/33 (66%), Positives = 29/33 (87%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNK 69
I+DI R+K+PI+VGGTNYYIESLLW +L++ K
Sbjct: 106 IEDIFARDKIPIVVGGTNYYIESLLWKVLVNTK 138
>sp|Q80UN9|MOD5_MOUSE tRNA dimethylallyltransferase, mitochondrial OS=Mus musculus
GN=Trit1 PE=2 SV=2
Length = 467
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/33 (66%), Positives = 28/33 (84%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNK 69
I+DI R+K+PI+VGGTNYYIESLLW +L+ K
Sbjct: 106 IEDIFARDKIPIVVGGTNYYIESLLWKVLITTK 138
>sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2
PE=1 SV=2
Length = 466
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQG---EFTLYDMDKIRNLEHGR 93
I++I+ RN +P++VGGT+YYI++++ LLD+ E+ ++ D D + GR
Sbjct: 102 IEEIVSRNHIPVLVGGTHYYIQAVVSKFLLDDAAEDTEECCADVASVVDQDMVVESVFGR 161
Query: 94 DVLEQ 98
D L
Sbjct: 162 DDLSH 166
>sp|B1MD01|MIAA_MYCA9 tRNA dimethylallyltransferase OS=Mycobacterium abscessus (strain
ATCC 19977 / DSM 44196) GN=miaA PE=3 SV=1
Length = 313
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 11 VVDFMRSWLDCWEKETLQSYSGR-INKIDDILQRNKVPIIVGGTNYYIESLL 61
+V M LD E T+ +Y R + IDDI R VP+IVGG+ YI++LL
Sbjct: 57 LVHHMLDVLDVTETATVATYQERAVATIDDIRARGHVPVIVGGSMMYIQALL 108
>sp|A0Q0M8|MIAA_CLONN tRNA dimethylallyltransferase OS=Clostridium novyi (strain NT)
GN=miaA PE=3 SV=1
Length = 314
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 9 HFVVDFMRSWLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTILLDN 68
H ++DF+ S D + + S N I DI R K+P+IVGGT +YI+SL++ N
Sbjct: 60 HHLIDFV-SPFDEFSVAEFKEKSK--NAIKDIASRGKLPMIVGGTGFYIDSLIFNYDFAN 116
Query: 69 KTNINEQGEFTLYDMDKIRNL--EHGRDVLEQ 98
E E ++NL EHG++ + +
Sbjct: 117 TYKDEEYREH-------LKNLASEHGKEYVHE 141
>sp|Q9PLF7|MIAA_CHLMU tRNA dimethylallyltransferase OS=Chlamydia muridarum (strain MoPn /
Nigg) GN=miaA PE=3 SV=1
Length = 314
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 21 CWEKETLQS---YSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGE 77
C +ET + Y I DIL RNKVPI+VGGT +Y + L + +
Sbjct: 67 CHVQETFNAVDFYYHAIQACQDILSRNKVPILVGGTGFYFHTFL------SGPPSGPSPD 120
Query: 78 FTLYDMDKIRNLEHGRDVLEQQRMQV 103
F L + + E G L Q+ +++
Sbjct: 121 FALREQLSLEAQERGIGALYQELVEL 146
>sp|Q4L610|MIAA_STAHJ tRNA dimethylallyltransferase OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=miaA PE=3 SV=1
Length = 332
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNL 89
I+DI R K+PII GGT YI+SL++ D++T E + T + K+ L
Sbjct: 89 IEDITSRGKIPIIAGGTGLYIQSLIYDYPFDDETVSKEVEQKTQLQLQKLEPL 141
>sp|Q820U0|MIAA_ENTFA tRNA dimethylallyltransferase OS=Enterococcus faecalis (strain ATCC
700802 / V583) GN=miaA PE=3 SV=1
Length = 309
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 10/58 (17%)
Query: 19 LDCWEKETLQSYS-------GRINKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNK 69
+DC +E ++YS GR KI +I ++ K+PIIVGGT YI+SLL+ L ++
Sbjct: 62 IDC--REVSETYSAADFQKEGR-QKIKEITEKGKLPIIVGGTGLYIQSLLYDFQLGSR 116
>sp|Q8CQL3|MIAA_STAES tRNA dimethylallyltransferase OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=miaA PE=1 SV=1
Length = 332
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 6 LEG--HFVVDFMR--SWLDCWE-KETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESL 60
+EG H+++D + + +E K+ + Y I DI +R KVPII GGT YI+SL
Sbjct: 59 MEGIPHYMIDILPPDASFSAYEFKKRAEKY------IKDITRRGKVPIIAGGTGLYIQSL 112
Query: 61 LWTILLDNKT 70
L+ ++++
Sbjct: 113 LYNYAFEDES 122
>sp|Q5HPN8|MIAA_STAEQ tRNA dimethylallyltransferase OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=miaA PE=3 SV=1
Length = 332
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 6 LEG--HFVVDFMR--SWLDCWE-KETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESL 60
+EG H+++D + + +E K+ + Y I DI +R KVPII GGT YI+SL
Sbjct: 59 MEGIPHYMIDILPPDASFSAYEFKKRAEKY------IKDITRRGKVPIIAGGTGLYIQSL 112
Query: 61 LWTILLDNKT 70
L+ ++++
Sbjct: 113 LYNYAFEDES 122
>sp|B9DUP8|MIAA_STRU0 tRNA dimethylallyltransferase OS=Streptococcus uberis (strain ATCC
BAA-854 / 0140J) GN=miaA PE=3 SV=1
Length = 301
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 24 KETLQSYSG------RINKIDDILQRNKVPIIVGGTNYYIESLL 61
++ Q+YS + I DIL R K+PIIVGGT YI+SLL
Sbjct: 68 RDVTQNYSAFDFVQDALEAIKDILSRGKIPIIVGGTGLYIQSLL 111
>sp|P07884|MOD5_YEAST tRNA dimethylallyltransferase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MOD5 PE=1
SV=2
Length = 428
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 24/28 (85%)
Query: 34 INKIDDILQRNKVPIIVGGTNYYIESLL 61
+N I+DI +R K+PI+VGGT+YY+++L
Sbjct: 93 MNAIEDIHRRGKIPIVVGGTHYYLQTLF 120
>sp|B1MXL9|MIAA_LEUCK tRNA dimethylallyltransferase OS=Leuconostoc citreum (strain KM20)
GN=miaA PE=3 SV=1
Length = 294
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 6 LEGHFVVDFMRSWLDCWEKETLQSYSGRINK-IDDILQRNKVPIIVGGTNYYIESLLWTI 64
L H ++D +D +K ++ + R ++ I+DI +R K+P+I GGT +Y+++LL
Sbjct: 56 LVPHHLIDI----VDMTDKFSVAEFVTRADQVINDIAKRGKLPVIAGGTGFYVKALLGQQ 111
Query: 65 LLD 67
LD
Sbjct: 112 PLD 114
>sp|Q4JV82|MIAA_CORJK tRNA dimethylallyltransferase OS=Corynebacterium jeikeium (strain
K411) GN=miaA PE=3 SV=1
Length = 310
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 19 LDCW---EKETLQSY-SGRINKIDDILQRNKVPIIVGGTNYYIESLL 61
LD W + ++ Y SG I +++IL R K+PIIVGG+ YI++L+
Sbjct: 67 LDIWPVTKPASVAEYRSGAIATVEEILSRGKMPIIVGGSMMYIQALV 113
>sp|Q2YXR3|MIAA_STAAB tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=miaA PE=3 SV=2
Length = 311
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEH 91
I DI R KVPII GGT YI+SL++ L+++T + Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTSAQLSVV---KQKLSALEH 139
>sp|O31795|MIAA_BACSU tRNA dimethylallyltransferase OS=Bacillus subtilis (strain 168)
GN=miaA PE=3 SV=2
Length = 314
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 6 LEG--HFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLW 62
+EG H ++D LD + + Y + NKI +I R K+P+IVGGT YI+S+L+
Sbjct: 58 MEGVPHHLIDI----LDPQDSFSTADYQSLVRNKISEIANRGKLPMIVGGTGLYIQSVLY 113
Query: 63 TILLDNKTN 71
+ N
Sbjct: 114 DYTFTEEAN 122
>sp|Q1J022|MIAA_DEIGD tRNA dimethylallyltransferase OS=Deinococcus geothermalis (strain
DSM 11300) GN=miaA PE=3 SV=1
Length = 304
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 35 NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGE 77
+ I D+L R +VP++VGGT +Y+ +L+ + L + + E
Sbjct: 82 SAIADVLARGRVPLVVGGTGFYLSALVRGLPLTPPADPQMRAE 124
>sp|C4L1B9|MIAA_EXISA tRNA dimethylallyltransferase OS=Exiguobacterium sp. (strain ATCC
BAA-1283 / AT1b) GN=miaA PE=3 SV=1
Length = 311
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLW 62
IDDI R K+PIIVGGT YI S+L+
Sbjct: 86 IDDIYARGKLPIIVGGTGLYIRSILY 111
>sp|Q49X96|MIAA_STAS1 tRNA dimethylallyltransferase OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=miaA PE=3 SV=1
Length = 315
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT---NINEQGEFTLYDMDKIRNLE 90
I +I R +VPIIVGGT YI+SL++ +++T +E E L ++D++ N E
Sbjct: 88 IKEITHRGRVPIIVGGTGLYIQSLIYDYAFEDETISEAHSESVETQLAELDQLSNDE 144
>sp|A5CSL4|MIAA_CLAM3 tRNA dimethylallyltransferase OS=Clavibacter michiganensis subsp.
michiganensis (strain NCPPB 382) GN=miaA PE=3 SV=1
Length = 307
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 11 VVDFMRSWLDCWEKETLQSYSGRINK-IDDILQRNKVPIIVGGTNYYIESLLW 62
V M LD + T+ Y G + I IL R VPI+VGG+ Y+ S+L+
Sbjct: 62 VPHHMLDVLDVTAEATVAGYQGEARRVITGILGRGAVPILVGGSGLYVSSVLF 114
>sp|B8FWE4|MIAA_DESHD tRNA dimethylallyltransferase OS=Desulfitobacterium hafniense
(strain DCB-2 / DSM 10664) GN=miaA PE=3 SV=1
Length = 314
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 33/111 (29%)
Query: 9 HFVVDFMRSWLDCWEKETLQSYSGRINK-IDDILQRNKVPIIVGGTNYYIESLL------ 61
H+++D LD E T+ + N+ I +I R KVPI+VGGT YI SL+
Sbjct: 59 HYLLD----ALDPAEPFTVAQFQTLANQSIQNIQSRGKVPIVVGGTGLYIRSLIDPFQFA 114
Query: 62 ----------WTILLDNKTNINEQGEFTLYDMDKIRNLEHGRDVLEQQRMQ 102
WT L +EQG+ L+ R L RD L QR+
Sbjct: 115 EHGSESIRSFWTAFL------SEQGKEALH-----RELAK-RDPLSAQRLH 153
>sp|Q6G9R0|MIAA_STAAS tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
MSSA476) GN=miaA PE=3 SV=1
Length = 311
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEH 91
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIV---KQKLSALEH 139
>sp|A2RIU4|MIAA_LACLM tRNA dimethylallyltransferase OS=Lactococcus lactis subsp. cremoris
(strain MG1363) GN=miaA PE=3 SV=1
Length = 294
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 9 HFVVDFMRSWLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTILLDN 68
H ++D +R W + + + R+ I++I++R VPIIVGGT YI+SL+ L
Sbjct: 61 HHLID-VRKWTENFSVHDFVMEANRL--IEEIIERGNVPIIVGGTGLYIQSLIEGYHLGG 117
Query: 69 KTN 71
+ N
Sbjct: 118 QEN 120
>sp|P65356|MIAA_STAAW tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain MW2)
GN=miaA PE=3 SV=1
Length = 311
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEH 91
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIV---KQKLSALEH 139
>sp|A8Z1X3|MIAA_STAAT tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
USA300 / TCH1516) GN=miaA PE=3 SV=1
Length = 311
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEH 91
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIV---KQKLSALEH 139
>sp|P65355|MIAA_STAAN tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
N315) GN=miaA PE=3 SV=1
Length = 311
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEH 91
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIV---KQKLSALEH 139
>sp|P65354|MIAA_STAAM tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=miaA PE=1 SV=1
Length = 311
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEH 91
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIV---KQKLSALEH 139
>sp|A6QGK1|MIAA_STAAE tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
Newman) GN=miaA PE=3 SV=1
Length = 311
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEH 91
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIV---KQKLSALEH 139
>sp|Q5HGC9|MIAA_STAAC tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain COL)
GN=miaA PE=3 SV=1
Length = 311
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEH 91
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIV---KQKLSALEH 139
>sp|A5ISI5|MIAA_STAA9 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain JH9)
GN=miaA PE=3 SV=1
Length = 311
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEH 91
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIV---KQKLSALEH 139
>sp|Q2FYZ2|MIAA_STAA8 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain NCTC
8325) GN=miaA PE=3 SV=1
Length = 311
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEH 91
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIV---KQKLSALEH 139
>sp|Q2FHD6|MIAA_STAA3 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
USA300) GN=miaA PE=3 SV=1
Length = 311
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEH 91
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIV---KQKLSALEH 139
>sp|A6U1C1|MIAA_STAA2 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain JH1)
GN=miaA PE=3 SV=1
Length = 311
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEH 91
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIV---KQKLSALEH 139
>sp|A7X1U8|MIAA_STAA1 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain Mu3
/ ATCC 700698) GN=miaA PE=3 SV=1
Length = 311
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEH 91
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIV---KQKLSALEH 139
>sp|O84771|MIAA_CHLTR tRNA dimethylallyltransferase OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=miaA PE=3 SV=2
Length = 314
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 21 CWEKETLQS---YSGRINKIDDILQRNKVPIIVGGTNYYIESLL 61
C +E+ + Y + DIL RNKVPI+VGGT +Y + L
Sbjct: 67 CHVQESFNAVDFYYHAVQACQDILSRNKVPILVGGTGFYFHTFL 110
>sp|Q6GHD2|MIAA_STAAR tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
MRSA252) GN=miaA PE=3 SV=1
Length = 311
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 70
I DI R KVPII GGT YI+SL++ L+++T
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDET 121
>sp|Q94ID2|IPT5_ARATH Adenylate isopentenyltransferase 5, chloroplastic OS=Arabidopsis
thaliana GN=IPT5 PE=1 SV=2
Length = 330
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 20 DCWEKETLQSYSGR-INKIDDILQRNKVPIIVGGTNYYIESLL 61
D +E T + + I ++ I+QR++VPII GG+N YIE+L+
Sbjct: 98 DTYEDFTAEDFQREAIRAVESIVQRDRVPIIAGGSNSYIEALV 140
>sp|B5XL33|MIAA_STRPZ tRNA dimethylallyltransferase OS=Streptococcus pyogenes serotype
M49 (strain NZ131) GN=miaA PE=3 SV=1
Length = 299
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 24 KETLQSYSG------RINKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTN 71
+E +SYS I DI+ R K+PIIVGGT Y++SLL L + N
Sbjct: 67 REVTESYSAYDFVQDAQKAISDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGQVN 120
>sp|Q03VI2|MIAA_LEUMM tRNA dimethylallyltransferase OS=Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 / NCDO 523) GN=miaA PE=3
SV=1
Length = 297
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 13/87 (14%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLD-NKTNINEQGEFTLYDMDK----IRNLEH 91
I DI+ R K+PIIVGGT Y+++LL L+ ++ E + Y++DK +++L+
Sbjct: 84 IADIISRGKLPIIVGGTGLYVKALLGFQELEYAASDTEEVHKLNAYELDKLVVELKSLDI 143
Query: 92 GR----DVLEQQR----MQVTKWTEKE 110
R D+ +QR +Q+ K+ +K+
Sbjct: 144 NRAQKVDLKNKQRVIRAIQIAKYGKKD 170
>sp|Q5M430|MIAA_STRT2 tRNA dimethylallyltransferase OS=Streptococcus thermophilus (strain
ATCC BAA-250 / LMG 18311) GN=miaA PE=3 SV=2
Length = 299
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINE 74
I DI+ R K+PIIVGGT Y++SLL L K + N+
Sbjct: 85 ITDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGKVDQNQ 122
>sp|C0MDJ6|MIAA_STRS7 tRNA dimethylallyltransferase OS=Streptococcus equi subsp.
zooepidemicus (strain H70) GN=miaA PE=3 SV=1
Length = 296
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 24 KETLQSYSG------RINKIDDILQRNKVPIIVGGTNYYIESLL 61
+E +SYS I+DI+ R K+PIIVGGT Y++SLL
Sbjct: 67 REVTESYSAFDFVQDAKRAIEDIVSRGKLPIIVGGTGLYLQSLL 110
>sp|B4U3M4|MIAA_STREM tRNA dimethylallyltransferase OS=Streptococcus equi subsp.
zooepidemicus (strain MGCS10565) GN=miaA PE=3 SV=1
Length = 296
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 24 KETLQSYSG------RINKIDDILQRNKVPIIVGGTNYYIESLL 61
+E +SYS I+DI+ R K+PIIVGGT Y++SLL
Sbjct: 67 REVTESYSAFDFVQDAKRAIEDIVSRGKLPIIVGGTGLYLQSLL 110
>sp|Q5LZH6|MIAA_STRT1 tRNA dimethylallyltransferase OS=Streptococcus thermophilus (strain
CNRZ 1066) GN=miaA PE=3 SV=2
Length = 299
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINE 74
I DI+ R K+PIIVGGT Y++SLL L K + N+
Sbjct: 85 ITDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGKVDQNQ 122
>sp|C0MAN2|MIAA_STRE4 tRNA dimethylallyltransferase OS=Streptococcus equi subsp. equi
(strain 4047) GN=miaA PE=3 SV=1
Length = 296
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 24 KETLQSYSG------RINKIDDILQRNKVPIIVGGTNYYIESLL 61
+E +SYS I+DI+ R K+PIIVGGT Y++SLL
Sbjct: 67 REVTESYSAFDFVQDAKRAIEDIVSRGKLPIIVGGTGLYLQSLL 110
>sp|Q24X66|MIAA_DESHY tRNA dimethylallyltransferase OS=Desulfitobacterium hafniense
(strain Y51) GN=miaA PE=3 SV=1
Length = 314
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 23/98 (23%)
Query: 9 HFVVDFMRSWLDCWEKETLQSYSGRINK-IDDILQRNKVPIIVGGTNYYIESLLWTILLD 67
H+++D L+ E T+ + N+ I DI R KVPI+VGGT YI SL+
Sbjct: 59 HYLLD----ALEPAEPFTVAQFQTLANQAIQDIQSRGKVPIVVGGTGLYIRSLI------ 108
Query: 68 NKTNINEQGEFTLYDMDKIRNL------EHGRDVLEQQ 99
+ +F + + IR+ E G++ L Q+
Sbjct: 109 ------DPFQFAEHGSESIRSFWTAFLSEQGKEALHQE 140
>sp|A6TR77|MIAA_ALKMQ tRNA dimethylallyltransferase OS=Alkaliphilus metalliredigens
(strain QYMF) GN=miaA PE=3 SV=1
Length = 312
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 27 LQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLLW 62
QS + R+ ID I +RNK PI+ GGT YI SLL+
Sbjct: 77 FQSEAARL--IDAITKRNKFPIVAGGTGLYINSLLY 110
>sp|Q031A8|MIAA_LACLS tRNA dimethylallyltransferase OS=Lactococcus lactis subsp. cremoris
(strain SK11) GN=miaA PE=3 SV=1
Length = 294
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 9 HFVVDFMRSWLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTILLDN 68
H ++D +R W + + + R+ I +I++R VPIIVGGT YI+SL+ L
Sbjct: 61 HHLID-VRKWTENFSVHDFVMEANRL--IKEIIERGNVPIIVGGTGLYIQSLIEGYHLGG 117
Query: 69 KTN 71
+ N
Sbjct: 118 QKN 120
>sp|Q97I21|MIAA_CLOAB tRNA dimethylallyltransferase OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=miaA PE=3 SV=1
Length = 309
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 9 HFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLL 61
H ++D +D E+ ++ S+ N IDDI R K PIIVGGT YI SL+
Sbjct: 59 HHLIDV----VDPSEEFSVASFKKMAQNAIDDITSRKKYPIIVGGTGLYINSLI 108
>sp|Q5QWA0|MIAA_IDILO tRNA dimethylallyltransferase OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=miaA PE=3 SV=1
Length = 316
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTI--LLDNKTNINEQGEFTLYD 82
IDDI QR KVP++VGGT Y ++LL + L ++ T++ E+ L++
Sbjct: 87 IDDIQQRGKVPLLVGGTMLYFKALLEGLSHLPESDTSVREKLTAELHE 134
>sp|B1YMH0|MIAA_EXIS2 tRNA dimethylallyltransferase OS=Exiguobacterium sibiricum (strain
DSM 17290 / JCM 13490 / 255-15) GN=miaA PE=3 SV=1
Length = 312
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 35 NKIDDILQRNKVPIIVGGTNYYIESLLW----TILLDNKTNINE-----QGEFTLYDMDK 85
ID+I + K+PIIVGGT YI ++L+ T+ +NK E Q E D+
Sbjct: 86 TAIDEIAAKGKLPIIVGGTGLYIRAILYDYQFTVQAENKVLREELEQFAQAEGATALHDR 145
Query: 86 IRNLEHGR 93
+R L+ R
Sbjct: 146 LRQLDAKR 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,099,421
Number of Sequences: 539616
Number of extensions: 1620497
Number of successful extensions: 4680
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 4335
Number of HSP's gapped (non-prelim): 388
length of query: 110
length of database: 191,569,459
effective HSP length: 78
effective length of query: 32
effective length of database: 149,479,411
effective search space: 4783341152
effective search space used: 4783341152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)