Query psy15752
Match_columns 110
No_of_seqs 123 out of 1094
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 20:28:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01715 IPPT: IPP transferase 100.0 5.5E-37 1.2E-41 237.2 9.5 100 5-108 20-130 (253)
2 PRK14729 miaA tRNA delta(2)-is 100.0 1.6E-35 3.4E-40 234.6 10.5 101 4-108 55-166 (300)
3 COG0324 MiaA tRNA delta(2)-iso 100.0 8.4E-34 1.8E-38 225.5 10.2 101 4-108 55-166 (308)
4 PLN02748 tRNA dimethylallyltra 100.0 5E-33 1.1E-37 231.0 10.2 101 4-108 74-197 (468)
5 TIGR00174 miaA tRNA isopenteny 100.0 7.5E-33 1.6E-37 218.2 9.8 100 5-108 52-162 (287)
6 PLN02840 tRNA dimethylallyltra 100.0 1.2E-31 2.6E-36 220.4 9.7 100 4-108 73-188 (421)
7 PRK00091 miaA tRNA delta(2)-is 100.0 5.6E-30 1.2E-34 203.1 9.5 100 5-108 57-167 (307)
8 KOG1384|consensus 99.7 2.4E-17 5.2E-22 132.5 5.0 57 4-64 59-116 (348)
9 PLN02165 adenylate isopentenyl 99.6 2.1E-16 4.6E-21 127.2 5.6 58 4-65 95-154 (334)
10 COG2069 CdhD CO dehydrogenase/ 91.5 0.21 4.5E-06 41.0 3.3 42 4-54 165-208 (403)
11 KOG1221|consensus 83.4 1 2.2E-05 38.4 2.7 55 43-97 11-83 (467)
12 PRK13775 formimidoylglutamase; 80.2 5.2 0.00011 32.1 5.6 40 25-64 103-143 (328)
13 PRK13776 formimidoylglutamase; 78.8 3.6 7.8E-05 32.9 4.3 39 26-64 98-137 (318)
14 TIGR01227 hutG formimidoylglut 76.6 4.3 9.3E-05 32.1 4.1 39 26-64 92-131 (307)
15 PRK13774 formimidoylglutamase; 76.3 4.6 0.0001 32.1 4.3 39 26-64 101-140 (311)
16 cd04235 AAK_CK AAK_CK: Carbama 76.1 2.3 5E-05 34.3 2.5 20 35-54 172-191 (308)
17 TIGR01230 agmatinase agmatinas 75.8 4.8 0.0001 31.3 4.2 40 25-64 73-113 (275)
18 PRK13773 formimidoylglutamase; 75.3 5.5 0.00012 31.8 4.5 39 26-64 100-139 (324)
19 TIGR01229 rocF_arginase argina 74.6 4 8.7E-05 32.2 3.5 39 26-64 64-103 (300)
20 PRK02190 agmatinase; Provision 74.0 6.2 0.00013 31.1 4.4 39 26-64 91-130 (301)
21 PRK13772 formimidoylglutamase; 71.4 7.3 0.00016 31.0 4.3 36 25-60 96-132 (314)
22 PRK01722 formimidoylglutamase; 69.4 8.6 0.00019 30.5 4.3 39 26-64 98-137 (320)
23 PF00491 Arginase: Arginase fa 69.1 6.2 0.00013 30.3 3.3 39 26-64 61-100 (277)
24 cd02067 B12-binding B12 bindin 69.0 5.5 0.00012 26.6 2.7 24 32-55 65-91 (119)
25 cd00071 GMPK Guanosine monopho 68.6 0.45 9.8E-06 33.2 -2.8 54 5-63 44-108 (137)
26 COG0127 Xanthosine triphosphat 66.6 8.8 0.00019 29.2 3.6 67 22-89 39-111 (194)
27 cd02070 corrinoid_protein_B12- 66.4 8.6 0.00019 28.4 3.5 21 35-55 152-175 (201)
28 cd02065 B12-binding_like B12 b 62.2 16 0.00034 24.0 3.9 21 35-55 68-90 (125)
29 PRK12454 carbamate kinase-like 60.0 7.9 0.00017 31.4 2.5 21 35-55 176-196 (313)
30 PF03464 eRF1_2: eRF1 domain 2 58.6 24 0.00051 24.4 4.4 64 28-93 53-129 (133)
31 cd02071 MM_CoA_mut_B12_BD meth 57.9 18 0.0004 24.5 3.7 28 28-55 61-91 (122)
32 PRK14556 pyrH uridylate kinase 57.4 9.5 0.00021 29.9 2.4 16 39-54 131-146 (249)
33 PF01745 IPT: Isopentenyl tran 57.2 16 0.00034 28.7 3.6 55 5-64 54-110 (233)
34 PF00852 Glyco_transf_10: Glyc 57.0 26 0.00056 28.2 5.0 55 35-94 245-304 (349)
35 TIGR02370 pyl_corrinoid methyl 55.1 19 0.00041 26.7 3.7 36 20-55 142-177 (197)
36 PF10743 Phage_Cox: Regulatory 53.3 24 0.00052 23.7 3.5 30 20-49 8-41 (87)
37 COG0010 SpeB Arginase/agmatina 52.8 28 0.00061 27.6 4.5 39 25-63 82-121 (305)
38 PLN02615 arginase 52.3 30 0.00064 28.1 4.6 38 26-63 127-166 (338)
39 COG0528 PyrH Uridylate kinase 50.5 14 0.0003 29.0 2.4 17 39-55 120-136 (238)
40 cd02868 PseudoU_synth_hTruB2_l 50.0 9.3 0.0002 29.5 1.3 15 50-64 171-185 (226)
41 PF09970 DUF2204: Nucleotidyl 49.4 17 0.00038 26.7 2.7 23 35-57 7-29 (181)
42 KOG3222|consensus 49.0 26 0.00057 26.7 3.6 58 35-93 53-111 (195)
43 COG1086 Predicted nucleoside-d 48.4 22 0.00048 31.3 3.5 65 43-109 249-323 (588)
44 PF03452 Anp1: Anp1; InterPro 47.6 3.2 7E-05 33.0 -1.6 19 50-68 247-267 (269)
45 PRK15122 magnesium-transportin 47.0 45 0.00097 30.5 5.3 77 31-109 552-635 (903)
46 TIGR00640 acid_CoA_mut_C methy 46.8 32 0.00069 24.1 3.6 26 28-53 64-92 (132)
47 PF14969 DUF4508: Domain of un 45.8 19 0.00041 24.7 2.2 40 57-96 36-94 (98)
48 PRK14556 pyrH uridylate kinase 45.0 78 0.0017 24.8 5.8 85 25-109 35-135 (249)
49 PRK12353 putative amino acid k 44.7 18 0.00039 28.9 2.3 22 35-56 176-197 (314)
50 TIGR01524 ATPase-IIIB_Mg magne 44.2 52 0.0011 29.9 5.3 77 31-109 517-600 (867)
51 PF02219 MTHFR: Methylenetetra 44.1 60 0.0013 25.2 5.1 40 25-68 182-229 (287)
52 COG4024 Uncharacterized protei 42.9 87 0.0019 24.1 5.5 72 25-109 64-155 (218)
53 KOG0185|consensus 42.2 14 0.0003 29.3 1.2 71 26-97 59-138 (256)
54 PRK10517 magnesium-transportin 41.3 63 0.0014 29.6 5.4 77 31-109 552-635 (902)
55 cd00537 MTHFR Methylenetetrahy 41.0 50 0.0011 25.3 4.2 40 25-68 170-217 (274)
56 COG4359 Uncharacterized conser 40.4 41 0.00089 26.0 3.5 18 48-65 94-111 (220)
57 PF00994 MoCF_biosynth: Probab 40.0 40 0.00086 23.2 3.2 20 35-54 48-67 (144)
58 cd00515 HAM1 NTPase/HAM1. Thi 39.9 15 0.00033 27.1 1.1 64 20-86 33-102 (183)
59 COG0474 MgtA Cation transport 39.5 46 0.00099 30.5 4.2 76 32-109 550-636 (917)
60 KOG3148|consensus 39.1 46 0.001 26.0 3.6 30 25-54 109-139 (273)
61 cd04501 SGNH_hydrolase_like_4 38.3 89 0.0019 21.6 4.8 34 20-53 71-105 (183)
62 COG1537 PelA Predicted RNA-bin 37.7 92 0.002 25.9 5.4 57 28-86 176-240 (352)
63 PRK12354 carbamate kinase; Rev 37.5 29 0.00063 28.1 2.4 20 35-54 166-185 (307)
64 PF09373 PMBR: Pseudomurein-bi 36.7 66 0.0014 17.2 3.1 28 23-50 3-31 (33)
65 TIGR01647 ATPase-IIIA_H plasma 36.2 69 0.0015 28.6 4.7 76 32-109 445-532 (755)
66 TIGR02137 HSK-PSP phosphoserin 36.1 55 0.0012 24.3 3.6 33 35-67 75-107 (203)
67 TIGR01125 MiaB-like tRNA modif 35.8 40 0.00086 27.8 3.0 21 34-55 55-76 (430)
68 PRK10078 ribose 1,5-bisphospho 35.6 71 0.0015 22.8 4.0 25 38-63 83-107 (186)
69 PF02001 DUF134: Protein of un 34.2 59 0.0013 22.4 3.2 25 29-53 76-101 (106)
70 PRK12686 carbamate kinase; Rev 33.8 36 0.00078 27.6 2.4 20 35-54 174-193 (312)
71 COG0149 TpiA Triosephosphate i 33.7 56 0.0012 25.8 3.4 19 35-53 187-210 (251)
72 PRK14822 nucleoside-triphospha 33.6 17 0.00038 27.4 0.5 61 26-87 43-110 (200)
73 PRK05835 fructose-bisphosphate 33.4 76 0.0016 25.7 4.2 20 35-54 194-214 (307)
74 COG1536 FliG Flagellar motor s 33.2 48 0.001 27.2 3.0 67 35-103 64-137 (339)
75 PRK14558 pyrH uridylate kinase 33.2 47 0.001 24.9 2.8 26 29-54 102-128 (231)
76 PRK00120 dITP/XTP pyrophosphat 32.8 20 0.00044 26.9 0.8 61 26-87 41-108 (196)
77 TIGR01769 GGGP geranylgeranylg 32.2 64 0.0014 24.5 3.4 28 19-53 5-33 (205)
78 cd01822 Lysophospholipase_L1_l 32.1 1.2E+02 0.0026 20.6 4.7 29 23-51 79-108 (177)
79 TIGR03263 guanyl_kin guanylate 32.1 61 0.0013 22.6 3.2 28 35-62 82-112 (180)
80 PF04851 ResIII: Type III rest 31.7 47 0.001 22.5 2.5 30 25-54 2-35 (184)
81 cd02069 methionine_synthase_B1 31.5 63 0.0014 24.3 3.3 31 21-54 147-178 (213)
82 PF03656 Pam16: Pam16; InterP 31.5 51 0.0011 23.3 2.6 26 35-63 77-102 (127)
83 TIGR00042 non-canonical purine 31.3 23 0.00049 26.3 0.8 63 24-87 36-102 (184)
84 PRK08202 purine nucleoside pho 31.3 66 0.0014 25.1 3.5 12 46-57 23-34 (272)
85 COG1954 GlpP Glycerol-3-phosph 30.8 38 0.00082 25.6 1.9 19 35-53 134-152 (181)
86 PF12000 Glyco_trans_4_3: Gkyc 30.5 84 0.0018 23.2 3.7 27 35-61 55-86 (171)
87 PF00941 FAD_binding_5: FAD bi 30.5 54 0.0012 23.6 2.7 18 42-59 20-37 (171)
88 PRK13900 type IV secretion sys 30.4 1.2E+02 0.0025 24.5 4.8 30 35-64 151-184 (332)
89 COG1687 AzlD Predicted branche 30.0 97 0.0021 21.5 3.7 36 22-57 63-99 (106)
90 PRK14821 putative deoxyribonuc 29.9 34 0.00073 25.4 1.5 59 28-87 40-100 (184)
91 cd02068 radical_SAM_B12_BD B12 29.8 71 0.0015 21.3 3.1 20 35-54 57-77 (127)
92 TIGR01106 ATPase-IIC_X-K sodiu 29.8 1E+02 0.0022 28.5 4.9 79 31-109 570-681 (997)
93 cd00758 MoCF_BD MoCF_BD: molyb 29.7 56 0.0012 22.3 2.6 21 35-55 50-70 (133)
94 TIGR01552 phd_fam prevent-host 29.1 1.2E+02 0.0025 17.2 3.6 25 25-51 2-27 (52)
95 PRK14166 bifunctional 5,10-met 28.8 1.2E+02 0.0026 24.2 4.5 34 29-62 12-53 (282)
96 cd00006 PTS_IIA_man PTS_IIA, P 28.6 1.6E+02 0.0034 19.7 4.6 40 20-59 33-76 (122)
97 cd00127 DSPc Dual specificity 28.5 1.7E+02 0.0036 19.3 4.7 41 4-50 45-86 (139)
98 COG2331 Uncharacterized protei 28.5 13 0.00027 24.7 -0.8 48 7-58 8-62 (82)
99 PF11239 DUF3040: Protein of u 28.2 50 0.0011 21.1 2.0 30 73-102 7-36 (82)
100 PRK02261 methylaspartate mutas 28.1 66 0.0014 22.6 2.7 20 35-54 73-94 (137)
101 cd04254 AAK_UMPK-PyrH-Ec UMP k 28.0 55 0.0012 24.6 2.5 20 35-54 111-130 (231)
102 PRK14179 bifunctional 5,10-met 27.9 1.3E+02 0.0028 24.0 4.6 35 28-62 12-55 (284)
103 PRK10528 multifunctional acyl- 27.2 1.8E+02 0.0038 20.8 4.9 31 20-50 83-114 (191)
104 cd02072 Glm_B12_BD B12 binding 26.7 90 0.002 22.0 3.2 10 45-54 81-90 (128)
105 PF02310 B12-binding: B12 bind 26.6 95 0.0021 20.1 3.2 27 35-61 70-99 (121)
106 PF08030 NAD_binding_6: Ferric 26.6 29 0.00063 23.7 0.7 11 45-55 3-13 (156)
107 PF03054 tRNA_Me_trans: tRNA m 26.5 66 0.0014 26.4 2.8 9 6-14 62-70 (356)
108 TIGR00824 EIIA-man PTS system, 26.4 1E+02 0.0022 20.8 3.3 38 20-57 34-75 (116)
109 PRK15016 isochorismate synthas 26.4 77 0.0017 26.5 3.2 25 28-52 51-77 (391)
110 PRK10638 glutaredoxin 3; Provi 26.4 1.1E+02 0.0024 18.8 3.3 36 4-53 24-61 (83)
111 cd00311 TIM Triosephosphate is 26.4 85 0.0018 24.3 3.3 19 35-53 183-207 (242)
112 cd01832 SGNH_hydrolase_like_1 26.4 1.6E+02 0.0034 20.2 4.5 28 24-51 84-112 (185)
113 PRK04220 2-phosphoglycerate ki 26.2 22 0.00047 28.7 -0.0 37 9-55 163-200 (301)
114 cd04242 AAK_G5K_ProB AAK_G5K_P 26.1 1.4E+02 0.0031 22.6 4.5 36 20-55 13-49 (251)
115 cd04252 AAK_NAGK-fArgBP AAK_NA 26.1 2E+02 0.0044 21.8 5.3 33 35-67 19-51 (248)
116 PRK06153 hypothetical protein; 26.0 66 0.0014 27.0 2.8 44 20-63 147-197 (393)
117 KOG2619|consensus 26.0 91 0.002 26.0 3.5 52 35-93 268-324 (372)
118 PRK14567 triosephosphate isome 26.0 1.2E+02 0.0025 23.9 4.0 27 28-54 178-211 (253)
119 PF03755 YicC_N: YicC-like fam 26.0 68 0.0015 22.9 2.5 41 5-50 24-65 (159)
120 PRK09196 fructose-1,6-bisphosp 25.9 1.2E+02 0.0026 25.0 4.2 21 35-55 215-237 (347)
121 PRK14823 putative deoxyribonuc 24.9 41 0.00089 25.1 1.2 61 26-87 41-108 (191)
122 TIGR00761 argB acetylglutamate 24.9 1.6E+02 0.0035 21.8 4.5 35 30-64 15-49 (231)
123 PF00175 NAD_binding_1: Oxidor 24.8 39 0.00084 21.4 1.0 8 48-55 1-8 (109)
124 cd04261 AAK_AKii-LysC-BS AAK_A 24.5 1.5E+02 0.0032 22.3 4.2 33 30-62 16-50 (239)
125 TIGR00111 pelota probable tran 24.5 1.9E+02 0.0041 23.5 5.1 36 27-64 179-215 (351)
126 PRK13894 conjugal transfer ATP 24.3 1.7E+02 0.0037 23.4 4.7 43 21-63 118-171 (319)
127 KOG3985|consensus 24.2 28 0.00061 27.7 0.2 16 49-64 14-29 (283)
128 cd04245 AAK_AKiii-YclM-BS AAK_ 24.2 59 0.0013 25.8 2.1 20 35-54 165-184 (288)
129 PRK14557 pyrH uridylate kinase 24.2 70 0.0015 24.7 2.4 18 37-54 118-135 (247)
130 PRK14824 putative deoxyribonuc 24.1 52 0.0011 24.8 1.7 39 26-65 39-78 (201)
131 cd00885 cinA Competence-damage 24.0 82 0.0018 22.8 2.7 21 35-55 50-70 (170)
132 COG0549 ArcC Carbamate kinase 23.7 70 0.0015 26.2 2.4 20 35-54 175-194 (312)
133 COG2185 Sbm Methylmalonyl-CoA 23.7 1E+02 0.0022 22.4 3.1 27 27-53 73-102 (143)
134 PRK05421 hypothetical protein; 23.6 1.6E+02 0.0035 22.4 4.4 28 25-52 162-189 (263)
135 PHA01806 hypothetical protein 23.6 92 0.002 23.9 2.9 43 19-64 9-52 (200)
136 COG1646 Predicted phosphate-bi 23.6 85 0.0018 24.8 2.8 29 19-54 22-51 (240)
137 TIGR03676 aRF1/eRF1 peptide ch 23.5 1.7E+02 0.0037 24.4 4.7 37 27-63 186-227 (403)
138 PF02798 GST_N: Glutathione S- 23.4 70 0.0015 19.5 1.9 16 39-54 45-61 (76)
139 TIGR01488 HAD-SF-IB Haloacid D 23.3 1.1E+02 0.0025 20.8 3.2 31 34-64 78-110 (177)
140 PRK09552 mtnX 2-hydroxy-3-keto 23.2 1.1E+02 0.0024 22.3 3.3 30 35-64 81-111 (219)
141 cd03052 GST_N_GDAP1 GST_N fami 23.2 44 0.00095 20.4 0.9 18 37-54 43-61 (73)
142 PRK05057 aroK shikimate kinase 23.1 1.1E+02 0.0024 21.8 3.2 32 24-55 53-85 (172)
143 PRK00042 tpiA triosephosphate 23.1 1.2E+02 0.0026 23.6 3.5 19 35-53 187-211 (250)
144 cd04234 AAK_AK AAK_AK: Amino A 22.9 1.1E+02 0.0024 22.8 3.3 27 26-52 93-121 (227)
145 COG0482 TrmU Predicted tRNA(5- 22.8 1E+02 0.0022 25.6 3.2 34 5-50 62-96 (356)
146 COG2704 DcuB Anaerobic C4-dica 22.8 64 0.0014 27.4 2.1 18 49-66 26-43 (436)
147 PRK13851 type IV secretion sys 22.7 1.7E+02 0.0036 23.8 4.5 30 35-64 153-186 (344)
148 PLN02989 cinnamyl-alcohol dehy 22.6 52 0.0011 25.1 1.4 20 42-61 3-22 (325)
149 PRK08564 5'-methylthioadenosin 22.6 32 0.00069 27.0 0.3 10 48-57 11-20 (267)
150 PF05185 PRMT5: PRMT5 arginine 22.6 1.5E+02 0.0033 25.0 4.3 33 29-61 165-205 (448)
151 smart00852 MoCF_biosynth Proba 22.6 1E+02 0.0022 20.9 2.8 20 35-54 49-68 (135)
152 COG0005 Pnp Purine nucleoside 22.1 35 0.00076 27.1 0.4 12 48-59 20-31 (262)
153 PLN02662 cinnamyl-alcohol dehy 22.1 53 0.0012 24.8 1.4 14 43-56 3-16 (322)
154 PF10432 bact-PGI_C: Bacterial 22.0 93 0.002 22.2 2.6 26 29-57 3-29 (155)
155 PF00696 AA_kinase: Amino acid 21.9 2.1E+02 0.0045 20.9 4.5 35 30-64 19-53 (242)
156 TIGR03706 exo_poly_only exopol 21.8 3.9E+02 0.0084 20.8 7.1 52 46-97 199-255 (300)
157 PRK04011 peptide chain release 21.7 2E+02 0.0043 24.0 4.8 36 27-62 194-234 (411)
158 PF03297 Ribosomal_S25: S25 ri 21.5 77 0.0017 21.8 2.0 25 32-56 74-99 (105)
159 TIGR01501 MthylAspMutase methy 21.5 1.4E+02 0.003 21.2 3.3 17 38-54 74-92 (134)
160 PF00658 PABP: Poly-adenylate 21.5 78 0.0017 20.1 1.9 19 77-95 21-39 (72)
161 TIGR00177 molyb_syn molybdenum 21.5 1E+02 0.0022 21.4 2.7 21 35-55 58-78 (144)
162 PF14399 Transpep_BrtH: NlpC/p 21.4 79 0.0017 24.2 2.3 25 32-57 75-100 (317)
163 cd07130 ALDH_F7_AASADH NAD+-de 21.0 84 0.0018 26.2 2.5 80 26-108 322-419 (474)
164 TIGR01464 hemE uroporphyrinoge 20.9 2.6E+02 0.0055 22.0 5.1 41 22-62 204-252 (338)
165 cd04246 AAK_AK-DapG-like AAK_A 20.9 1.9E+02 0.0042 21.6 4.3 34 30-63 16-51 (239)
166 PF00763 THF_DHG_CYH: Tetrahyd 20.9 2.1E+02 0.0045 19.4 4.0 36 28-63 10-53 (117)
167 PRK14825 putative deoxyribonuc 20.9 56 0.0012 24.6 1.3 37 28-65 41-80 (199)
168 PF14160 FAM110_C: Centrosome- 20.8 39 0.00084 23.6 0.4 22 84-107 83-104 (111)
169 PRK09177 xanthine-guanine phos 20.8 1.9E+02 0.0041 20.6 4.0 45 23-67 8-56 (156)
170 cd04255 AAK_UMPK-MosAB AAK_UMP 20.7 73 0.0016 24.8 1.9 20 35-54 126-145 (262)
171 PRK15181 Vi polysaccharide bio 20.7 57 0.0012 25.5 1.4 19 43-61 14-32 (348)
172 PRK07315 fructose-bisphosphate 20.6 81 0.0017 25.1 2.2 22 35-56 191-214 (293)
173 PRK08841 aspartate kinase; Val 20.5 77 0.0017 26.1 2.1 31 23-53 106-137 (392)
174 TIGR02622 CDP_4_6_dhtase CDP-g 20.5 59 0.0013 25.3 1.4 13 43-55 3-15 (349)
175 PF15637 Tox-HNH-HHH: HNH/Endo 20.4 72 0.0016 22.5 1.7 29 76-107 36-64 (116)
176 cd04724 Tryptophan_synthase_al 20.1 80 0.0017 24.0 2.0 22 31-52 172-194 (242)
177 KOG1673|consensus 20.1 64 0.0014 24.5 1.4 30 20-53 104-133 (205)
No 1
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=100.00 E-value=5.5e-37 Score=237.18 Aligned_cols=100 Identities=29% Similarity=0.422 Sum_probs=81.9
Q ss_pred cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc-CCCCCchh---------h
Q psy15752 5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI-LLDNKTNI---------N 73 (110)
Q Consensus 5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~-~~p~~~~~---------~ 73 (110)
++|||||||+ +||+++|||++|.++| ++|++|+++||+||||||||||++||++|+ .+|+.+.. +
T Consensus 20 ~~vpHhlid~----~~p~e~ysv~~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~g~~~~p~~~~~~r~~~~~~~~ 95 (253)
T PF01715_consen 20 AGVPHHLIDI----LDPDEEYSVGDFQRDAREAIEDILARGKIPILVGGTGLYIQALLNGLADIPEVDPELRAELRAELE 95 (253)
T ss_dssp TTS-EESSS-----B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTS--TSSSHHHHHHHHHHHHH
T ss_pred cCCCEeeeee----ecccCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHhChhhhccccHHHHHHHHHHHH
Confidence 6899999999 7999999999999999 999999999999999999999999999999 47755422 5
Q ss_pred hcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752 74 EQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE 108 (110)
Q Consensus 74 ~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~ 108 (110)
..|.++||++|+++||++|++|||||++||+|++|
T Consensus 96 ~~~~~~l~~~L~~~DP~~A~~i~~nd~~Ri~RALe 130 (253)
T PF01715_consen 96 EEGNEELYEELKEVDPEAAAKIHPNDRRRIIRALE 130 (253)
T ss_dssp HSCHHHHHHHHHHC-HHHHCTS-TT-HHHHHHHHH
T ss_pred hccHHHHHHHHHhhCcHhhhcCCCCcHHHHHHHHH
Confidence 68999999999999999999999999999999987
No 2
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=100.00 E-value=1.6e-35 Score=234.59 Aligned_cols=101 Identities=20% Similarity=0.319 Sum_probs=92.4
Q ss_pred ccCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccC-CCCCchh---------
Q psy15752 4 SRLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTIL-LDNKTNI--------- 72 (110)
Q Consensus 4 ~~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~-~p~~~~~--------- 72 (110)
.++|||||||+ ++|.++|||++|+++| ++|++++++|++||||||||||++||++|+. .|+.++.
T Consensus 55 ~~~i~Hhlid~----~~p~e~~sv~~f~~~a~~~i~~i~~~gk~PilvGGTglYi~all~gl~~~p~~~~~~r~~~~~~~ 130 (300)
T PRK14729 55 RKHIKHHLVDF----LEPIKEYNLGIFYKEALKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPSTPPVSSKIRIYVNNLF 130 (300)
T ss_pred HcCCCeeeeec----cCCCCceeHHHHHHHHHHHHHHHHHCCCCEEEEeCchHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 36899999999 8999999999999999 9999999999999999999999999999984 4543321
Q ss_pred hhcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752 73 NEQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE 108 (110)
Q Consensus 73 ~~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~ 108 (110)
+..|.++||++|+++||++|++|||||++||+|++|
T Consensus 131 ~~~g~~~l~~~L~~~DP~~A~~i~pnd~~Ri~RALE 166 (300)
T PRK14729 131 TLKGKSYLLEELKRVDFIRYESINKNDIYRIKRSLE 166 (300)
T ss_pred HhcCHHHHHHHHHhcCHHHHhhCCcCCHHHHHHHHH
Confidence 357999999999999999999999999999999997
No 3
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-34 Score=225.52 Aligned_cols=101 Identities=28% Similarity=0.337 Sum_probs=93.8
Q ss_pred ccCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc-CCCCCchh---------
Q psy15752 4 SRLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI-LLDNKTNI--------- 72 (110)
Q Consensus 4 ~~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~-~~p~~~~~--------- 72 (110)
.++|||||||+ +||++.|||++|+++| ++|++|.++||+||||||||||++||++|+ ..|..+..
T Consensus 55 ~~~vpHhliDi----~~p~e~ysa~~f~~~a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p~~~~~~r~~~~~~~ 130 (308)
T COG0324 55 LAGVPHHLIDI----RDPTESYSAAEFQRDALAAIDDILARGKLPILVGGTGLYLKALLEGLSLLPEADPEVRRRLEAEL 130 (308)
T ss_pred HcCCCEEEecc----cCccccccHHHHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 36899999999 8999999999999999 999999999999999999999999999999 46764422
Q ss_pred hhcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752 73 NEQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE 108 (110)
Q Consensus 73 ~~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~ 108 (110)
+..|..+||+.|+++||++|++|||||++|++|++|
T Consensus 131 ~~~g~~~L~~~L~~~Dp~~a~~i~pnD~~Ri~RALE 166 (308)
T COG0324 131 AELGNDALHAELKKIDPEAAAKIHPNDPQRIIRALE 166 (308)
T ss_pred HhcCHHHHHHHHHhhCHHHHHhcCCCchhHHHHHHH
Confidence 478999999999999999999999999999999997
No 4
>PLN02748 tRNA dimethylallyltransferase
Probab=100.00 E-value=5e-33 Score=231.03 Aligned_cols=101 Identities=25% Similarity=0.414 Sum_probs=90.3
Q ss_pred ccCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccCC---CCCc---------
Q psy15752 4 SRLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTILL---DNKT--------- 70 (110)
Q Consensus 4 ~~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~~---p~~~--------- 70 (110)
.++|||||||+ ++|+++|||++|.++| ++|++|+++|++||||||||||++||++|+.+ |+..
T Consensus 74 ~~~VpHHLid~----v~p~e~ysv~~F~~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~g~~~~~~p~~~~~~~~~~~~ 149 (468)
T PLN02748 74 QKGVPHHLLGV----ISPSVEFTAKDFRDHAVPLIEEILSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDCTFVVAS 149 (468)
T ss_pred HcCCCCeeEee----cCCCCcCcHHHHHHHHHHHHHHHHhcCCCeEEEcChHHHHHHHHcCcccccCCccccccccccCH
Confidence 46899999999 7999999999999999 99999999999999999999999999999843 2111
Q ss_pred ----------hhhhcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752 71 ----------NINEQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE 108 (110)
Q Consensus 71 ----------~~~~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~ 108 (110)
.....|.++||++|+++||++|++|||||++||+|+||
T Consensus 150 ~~r~~l~~~~~~~~~g~~~l~~~L~~vDP~~A~rihpnD~rRI~RALE 197 (468)
T PLN02748 150 VLDEHMDVESGLGNDDEDHGYELLKELDPVAANRIHPNNHRKINRYLE 197 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHhhcCCccHHHHHHHHH
Confidence 01235889999999999999999999999999999997
No 5
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=100.00 E-value=7.5e-33 Score=218.15 Aligned_cols=100 Identities=27% Similarity=0.337 Sum_probs=91.7
Q ss_pred cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccC-CCCCch---------hh
Q psy15752 5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTIL-LDNKTN---------IN 73 (110)
Q Consensus 5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~-~p~~~~---------~~ 73 (110)
++|||||||+ ++|.+.|||++|..+| +.|++++++|++||||||||||++||++|+. .|+.++ .+
T Consensus 52 ~~v~hhlid~----~~~~~~~~v~~f~~~a~~~i~~~~~~g~~pi~vGGTg~Yi~all~g~~~~p~~~~~~r~~l~~~~~ 127 (287)
T TIGR00174 52 EGIPHHLIDI----LDPSESYSAADFQTLALNAIADITARGKIPLLVGGTGLYLKALLEGLSPTPSADKLIREQLEILAE 127 (287)
T ss_pred cCccEEEEEE----echhheEcHHHHHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 5899999999 7999999999999999 9999999999999999999999999999984 454322 13
Q ss_pred hcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752 74 EQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE 108 (110)
Q Consensus 74 ~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~ 108 (110)
..|.+++|++|+++||++|++|||||++||+|++|
T Consensus 128 ~~g~~~l~~~L~~~DP~~a~~i~~nd~~Ri~RALE 162 (287)
T TIGR00174 128 EQGWDFLYNELKKVDPVAAAKIHPNDTRRVQRALE 162 (287)
T ss_pred HcCHHHHHHHHHhcCHHHHHhcCCccHHHHHHHHH
Confidence 57999999999999999999999999999999997
No 6
>PLN02840 tRNA dimethylallyltransferase
Probab=99.97 E-value=1.2e-31 Score=220.37 Aligned_cols=100 Identities=16% Similarity=0.269 Sum_probs=88.3
Q ss_pred ccCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc-CCCCCchh---------
Q psy15752 4 SRLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI-LLDNKTNI--------- 72 (110)
Q Consensus 4 ~~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~-~~p~~~~~--------- 72 (110)
.++|||||||+ ++|+++|||++|.++| ++|++++++|++||||||||||++||++|+ .+|..++.
T Consensus 73 ~~~V~Hhlidi----l~p~e~ySv~~F~~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~~~p~~~~~~r~~l~~~l 148 (421)
T PLN02840 73 RKEVPHHLIDI----LHPSDDYSVGAFFDDARRATQDILNRGRVPIVAGGTGLYLRWYIYGKPDVPKSSPEITSEVWSEL 148 (421)
T ss_pred HcCCCeEeEee----cCCCCceeHHHHHHHHHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 36899999999 7999999999999999 999999999999999999999999999998 45643321
Q ss_pred hh----cCHHHHHHHH-HhcChHHHhcccCCChhhhhhhcc
Q psy15752 73 NE----QGEFTLYDMD-KIRNLEHGRDVLEQQRMQVTKWTE 108 (110)
Q Consensus 73 ~~----~g~~~l~~~L-~~~DP~~a~~I~~nD~~Ri~r~~~ 108 (110)
++ .|.+++|++| +.+|| +|++|||||++||+|+||
T Consensus 149 ~~~~~~~g~~~l~~~Ll~~~DP-~A~~i~pnD~~Ri~RALE 188 (421)
T PLN02840 149 VDFQKNGDWDAAVELVVNAGDP-KARSLPRNDWYRLRRSLE 188 (421)
T ss_pred HHhccccCHHHHHHHHHhccCc-HHHhcCCCcHHHHHHHHH
Confidence 11 4588999996 55799 999999999999999997
No 7
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=99.96 E-value=5.6e-30 Score=203.13 Aligned_cols=100 Identities=27% Similarity=0.319 Sum_probs=91.6
Q ss_pred cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc-CCCCCchh---------h
Q psy15752 5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI-LLDNKTNI---------N 73 (110)
Q Consensus 5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~-~~p~~~~~---------~ 73 (110)
.+|||||||+ ++|.+.||+++|.++| +.|++++++|++||||||||||++|+++|+ ..|+.++. .
T Consensus 57 ~gv~hhlid~----~~~~~~~s~~~f~~~a~~~i~~i~~~gk~pIlvGGt~~Y~~al~~g~~~~p~~~~~~r~~l~~~~~ 132 (307)
T PRK00091 57 AGVPHHLIDI----LDPTESYSVADFQRDALAAIADILARGKLPILVGGTGLYIKALLEGLSPLPPADPELRAELEALAA 132 (307)
T ss_pred cCccEEeecc----cChhhcccHHHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHhccCCCCCCCCCHHHHHHHHHHHH
Confidence 6899999999 7999999999999999 999999999999999999999999999998 44543321 3
Q ss_pred hcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752 74 EQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE 108 (110)
Q Consensus 74 ~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~ 108 (110)
..|.+++|++|+++||++|++|||||++||+|++|
T Consensus 133 ~~g~~~l~~~L~~~Dp~~a~~i~~~d~~Ri~RAlE 167 (307)
T PRK00091 133 EEGWEALHAELAEIDPEAAARIHPNDPQRIIRALE 167 (307)
T ss_pred hcCHHHHHHHHHhcCHHHHhhcCCCCCchhHHHHH
Confidence 56999999999999999999999999999999997
No 8
>KOG1384|consensus
Probab=99.68 E-value=2.4e-17 Score=132.48 Aligned_cols=57 Identities=28% Similarity=0.449 Sum_probs=55.0
Q ss_pred ccCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 4 SRLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 4 ~~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
+.+|||||+|+ ++|..+||+++|+++| ..|++|++|||+||+||||++|++||+.+-
T Consensus 59 ~~gVPHHLlg~----l~~~~e~t~~~F~~~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~ 116 (348)
T KOG1384|consen 59 RKGVPHHLLGH----LHPEAEYTAGEFEDDASRAIEEIHSRGKLPIVVGGSNSYLQALLSKR 116 (348)
T ss_pred cCCCChHHhCc----CChHhhccHHHHHHHHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcC
Confidence 57999999999 7999999999999999 999999999999999999999999999984
No 9
>PLN02165 adenylate isopentenyltransferase
Probab=99.64 E-value=2.1e-16 Score=127.20 Aligned_cols=58 Identities=28% Similarity=0.397 Sum_probs=54.4
Q ss_pred ccCCccceecccCCCCCCCC-CCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccC
Q psy15752 4 SRLEGHFVVDFMRSWLDCWE-KETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTIL 65 (110)
Q Consensus 4 ~~~vpHhli~~v~~~~d~~e-~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~ 65 (110)
.+++||||+|+ ++|.+ .||+++|.+++ +.|++++++|++||+|||||||++||++|+.
T Consensus 95 r~gv~Hhli~~----~~~~~~~~sv~~F~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~ 154 (334)
T PLN02165 95 RRGVPHHLLGE----LNPDDGELTASEFRSLASLSISEITSRQKLPIVAGGSNSFIHALLADRF 154 (334)
T ss_pred HcCCChhhhhe----eccccceeeHHHHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCC
Confidence 36899999999 79987 99999999999 9999999999999999999999999999963
No 10
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=91.53 E-value=0.21 Score=40.99 Aligned_cols=42 Identities=24% Similarity=0.433 Sum_probs=32.4
Q ss_pred ccCCccceecccCCCCCCC-CCCCHHHHHHHH-HHHHHHHhcCCceEEEccCh
Q psy15752 4 SRLEGHFVVDFMRSWLDCW-EKETLQSYSGRI-NKIDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 4 ~~~vpHhli~~v~~~~d~~-e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTg 54 (110)
+..|.-|||+. ||. ..-++ +.| +.++++++.=++||++||||
T Consensus 165 admvTiHlIsT-----dPki~D~p~----~EAak~lEdvLqAVdvPiiiGGSG 208 (403)
T COG2069 165 ADMVTIHLIST-----DPKIKDTPA----KEAAKTLEDVLQAVDVPIIIGGSG 208 (403)
T ss_pred CceEEEEeecC-----CccccCCCH----HHHHHHHHHHHHhcCcCEEecCCC
Confidence 45567789988 554 33333 456 99999999999999999997
No 11
>KOG1221|consensus
Probab=83.38 E-value=1 Score=38.41 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=40.0
Q ss_pred cCCceEEEccChhHHHHHHccc--CCCCCchh----------------hhcCHHHHHHHHHhcChHHHhcccC
Q psy15752 43 RNKVPIIVGGTNYYIESLLWTI--LLDNKTNI----------------NEQGEFTLYDMDKIRNLEHGRDVLE 97 (110)
Q Consensus 43 ~gk~PIlVGGTglY~~all~g~--~~p~~~~~----------------~~~g~~~l~~~L~~~DP~~a~~I~~ 97 (110)
+||.-++.|||||.-+.+++-+ .-|+.... ...-.+.|+++|++.-|+.-.|+-|
T Consensus 11 ~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~p 83 (467)
T KOG1221|consen 11 KNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVP 83 (467)
T ss_pred CCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceeccee
Confidence 6899999999999999999886 23433210 1222348999999998887777655
No 12
>PRK13775 formimidoylglutamase; Provisional
Probab=80.22 E-value=5.2 Score=32.07 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=30.9
Q ss_pred CCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 25 ETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 25 ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
.++....... +.+.++.++|+.||+.||-+.---+.+.|+
T Consensus 103 ~~~~~~~~~l~~~v~~~~~~g~~PivlGGdHsit~g~~~g~ 143 (328)
T PRK13775 103 RSLEQLQNSLSKAIKRMCDLNLKPIVLGGGHETAYGHYLGL 143 (328)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCeEEEEcCcHHHHHHHHHHH
Confidence 4566666666 889999999999999999976655555554
No 13
>PRK13776 formimidoylglutamase; Provisional
Probab=78.75 E-value=3.6 Score=32.88 Aligned_cols=39 Identities=23% Similarity=0.426 Sum_probs=29.8
Q ss_pred CHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 26 TLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
++....... +.+.++.++|+.||++||-+.-.-+.+.|+
T Consensus 98 ~~~~~~~~i~~~v~~i~~~g~~Pi~lGGdHsit~g~~~a~ 137 (318)
T PRK13776 98 DLEAAQSRYAQRVHDLLDRGHLPIGLGGGHEIAWASFQGL 137 (318)
T ss_pred hHHHHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHhHHHH
Confidence 466776666 888999999999999999966554544443
No 14
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=76.63 E-value=4.3 Score=32.08 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=30.3
Q ss_pred CHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 26 TLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
++....+.. +.+.+++++|+.||+.||.+.---+.+.++
T Consensus 92 ~~~~~~~~i~~~v~~~~~~g~~Pi~lGGdHsit~~~~~al 131 (307)
T TIGR01227 92 DLEDTQHEIAQTAAALLADHRVPVILGGGHSIAYATFAAL 131 (307)
T ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEECCcchhHHHHHHHH
Confidence 566676666 888999999999999999976555555554
No 15
>PRK13774 formimidoylglutamase; Provisional
Probab=76.31 E-value=4.6 Score=32.10 Aligned_cols=39 Identities=8% Similarity=0.092 Sum_probs=29.7
Q ss_pred CHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 26 TLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
++....+.. +.+.++.++|+.||+.||-+.---..+.|+
T Consensus 101 ~~~~~~~~i~~~v~~i~~~g~~pivlGGdHsit~g~~~a~ 140 (311)
T PRK13774 101 ELIDTQKEFAMLAAKSIANHRQTFLLGGGHDIAYAQYLAT 140 (311)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEEcCchHHHHHHHHHH
Confidence 356666666 888999999999999999966555555553
No 16
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=76.09 E-value=2.3 Score=34.31 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCceEEEccCh
Q psy15752 35 NKIDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTg 54 (110)
+.|+.++++|.+||++||+|
T Consensus 172 ~~I~~Ll~~g~IpI~~GggG 191 (308)
T cd04235 172 EAIKTLVDNGVIVIAAGGGG 191 (308)
T ss_pred HHHHHHHHCCCEEEEECCCc
Confidence 55777889999999999964
No 17
>TIGR01230 agmatinase agmatinase. Note: a history of early misannotation of members of this family is detailed in PUBMED:10931887.
Probab=75.82 E-value=4.8 Score=31.27 Aligned_cols=40 Identities=15% Similarity=0.395 Sum_probs=30.3
Q ss_pred CCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 25 ETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 25 ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
-++....+.. +.+.++.++|+.||++||-+.=--+++.++
T Consensus 73 ~~~~~~~~~i~~~v~~~~~~~~~pi~lGGdHsis~~~i~al 113 (275)
T TIGR01230 73 GDAREMFEKIQEHAEEFLEEGKFPVAIGGEHSITLPVIRAM 113 (275)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEecCcchhhHHHHHHH
Confidence 3566777776 888899999999999999866555555554
No 18
>PRK13773 formimidoylglutamase; Provisional
Probab=75.29 E-value=5.5 Score=31.85 Aligned_cols=39 Identities=15% Similarity=0.376 Sum_probs=29.5
Q ss_pred CHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 26 TLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
++....+.. +.+.++.++|+.||+.||-+.---+.+.|+
T Consensus 100 ~~~~~~~~i~~~v~~~~~~g~~PivLGGdHsit~g~~~a~ 139 (324)
T PRK13773 100 DLEAGQERLGDAVSALLDAGHLPVVLGGGHETAFGSYLGV 139 (324)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeeEEECCchHHHHHhHHHH
Confidence 466655665 888999999999999999976655555554
No 19
>TIGR01229 rocF_arginase arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).
Probab=74.62 E-value=4 Score=32.16 Aligned_cols=39 Identities=10% Similarity=0.330 Sum_probs=28.5
Q ss_pred CHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 26 TLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
++..+.+.. +.+.++.++|+.||+.||-..---+.+.|+
T Consensus 64 ~~~~~~~~i~~~v~~~~~~g~~pi~lGGdHsi~~~~~~a~ 103 (300)
T TIGR01229 64 YVLAATEQLAPKVYEVFEEGRFPLVLGGDHSIAIGTISGT 103 (300)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeEEEcCcchhhhhhHHHH
Confidence 455666666 888999999999999999865544444443
No 20
>PRK02190 agmatinase; Provisional
Probab=74.04 E-value=6.2 Score=31.10 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=30.1
Q ss_pred CHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 26 TLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
++....+.. +.++++.++|+.||+.||-..---+.+.++
T Consensus 91 ~~~~~~~~i~~~v~~~~~~g~~pi~lGGdHsit~~~~~a~ 130 (301)
T PRK02190 91 DAEDFPEALEAHAEKILAAGKRMLTLGGDHFITLPLLRAH 130 (301)
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEECCcchhhHHHHHHH
Confidence 456666666 888999999999999999977665555554
No 21
>PRK13772 formimidoylglutamase; Provisional
Probab=71.45 E-value=7.3 Score=31.01 Aligned_cols=36 Identities=17% Similarity=0.331 Sum_probs=27.0
Q ss_pred CCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHH
Q psy15752 25 ETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESL 60 (110)
Q Consensus 25 ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~al 60 (110)
-++....... +.+.++.++|+.||+.||-+.---+.
T Consensus 96 ~~~~~~~~~i~~~v~~~~~~g~~PivlGGdHsit~g~ 132 (314)
T PRK13772 96 GDLESAQAALAEVVAEVLAAGARPLVLGGGHEVAWGT 132 (314)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCEEEEEcCchHHHHhh
Confidence 3456666666 88899999999999999985544333
No 22
>PRK01722 formimidoylglutamase; Provisional
Probab=69.37 E-value=8.6 Score=30.52 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=29.2
Q ss_pred CHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 26 TLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
++....+.. +.+.++.++|+.||+.||-+.---+.+.++
T Consensus 98 ~~~~~~~~i~~~v~~~~~~g~~pi~lGGdHsit~~~~~al 137 (320)
T PRK01722 98 DLEEAQQALADTVGHCLRPNMRTIVLGGGHEIAFGSFAGV 137 (320)
T ss_pred hHHHHHHHHHHHHHHHHhCCCeeEEEcCchHHHHHHHHHH
Confidence 456666666 888889999999999999866554555444
No 23
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3.5.3.1 from EC), agmatinase (3.5.3.11 from EC), formiminoglutamase (3.5.3.8 from EC) and proclavaminate amidinohydrolase (3.5.3.22 from EC) []. These enzymes share a 3-layer alpha-beta-alpha structure [, , ], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways. Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion []. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia. Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals. Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide. Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0046872 metal ion binding; PDB: 4DZ4_A 3SL0_A 3MMR_A 3SL1_A 2EF5_D 2EIV_K 2EF4_A 3NIO_F 3THH_A 1WVA_A ....
Probab=69.15 E-value=6.2 Score=30.28 Aligned_cols=39 Identities=15% Similarity=0.356 Sum_probs=30.0
Q ss_pred CHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 26 TLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
+..+..+.. +.+.++.++|+.||+.||-..---+.+.++
T Consensus 61 ~~~~~~~~l~~~v~~~~~~g~~pi~lGGdhsis~~~~~~l 100 (277)
T PF00491_consen 61 DNEQVFERLAEAVAEVLEAGAFPIVLGGDHSISYGTIAAL 100 (277)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEEEEESSGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCCCEEEecCCCchhHHHhHHHH
Confidence 444445555 888999999999999999887766666665
No 24
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=69.01 E-value=5.5 Score=26.58 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=15.9
Q ss_pred HHH-HHHHHHHhcC--CceEEEccChh
Q psy15752 32 GRI-NKIDDILQRN--KVPIIVGGTNY 55 (110)
Q Consensus 32 ~~a-~~i~~i~~~g--k~PIlVGGTgl 55 (110)
..+ +.++.+.+.+ +++|++||...
T Consensus 65 ~~~~~~i~~l~~~~~~~~~i~vGG~~~ 91 (119)
T cd02067 65 TLMKEVIEELKEAGLDDIPVLVGGAIV 91 (119)
T ss_pred HHHHHHHHHHHHcCCCCCeEEEECCCC
Confidence 344 5555555554 58999999853
No 25
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=68.58 E-value=0.45 Score=33.17 Aligned_cols=54 Identities=7% Similarity=-0.092 Sum_probs=34.7
Q ss_pred cCCccceecccCCCCCCCCCCCHHHHHH----------HH-HHHHHHHhcCCceEEEccChhHHHHHHcc
Q psy15752 5 RLEGHFVVDFMRSWLDCWEKETLQSYSG----------RI-NKIDDILQRNKVPIIVGGTNYYIESLLWT 63 (110)
Q Consensus 5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~----------~a-~~i~~i~~~gk~PIlVGGTglY~~all~g 63 (110)
.+++||+++. .+....++.+.|.. .. +.+++++++|++||+.. +.-.++.+-..
T Consensus 44 ~g~~~~~v~~----~~~~~~~~~~~f~e~~~~~~~~yg~~~~~i~~~~~~g~~~il~~-~~~~~~~l~~~ 108 (137)
T cd00071 44 DGVDYHFVSK----EEFERLIENGEFLEWAEFHGNYYGTSKAAVEEALAEGKIVILEI-DVQGARQVKKS 108 (137)
T ss_pred CCceeEEeCH----HHHHHHHHcCCeEEEEEEcCEEecCcHHHHHHHHhCCCeEEEEe-cHHHHHHHHHc
Confidence 4577888875 23333333332222 44 77899999999999887 66666666654
No 26
>COG0127 Xanthosine triphosphate pyrophosphatase [Nucleotide transport and metabolism]
Probab=66.62 E-value=8.8 Score=29.16 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=51.2
Q ss_pred CCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccCCC-CCc----hhhhcCHHHHHHHHHhcCh
Q psy15752 22 WEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTILLD-NKT----NINEQGEFTLYDMDKIRNL 89 (110)
Q Consensus 22 ~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p-~~~----~~~~~g~~~l~~~L~~~DP 89 (110)
.-+=+...|.+-| .+.......-..|++|=-|||.+.|| +|++-+ +.. .+.+.|.+.+.++|..++-
T Consensus 39 e~eEtg~tf~enA~~Ka~~~a~~~g~pviaDDSGL~v~aL-~G~PGvYSar~~~~~~d~~~~~klL~~l~~~~~ 111 (194)
T COG0127 39 EVEETGLTFEENALLKARAAAKATGLPVIADDSGLCVDAL-NGFPGVYSARFAGEADDTIGNEKLLKLLEGVPD 111 (194)
T ss_pred CccchhhHHHHHHHHHHHHHHhhcCCcEEEecCceEEecc-CCCCcceeehhcccCchhhhHHHHHHHhcCCCC
Confidence 3445778899998 88888878888999999999999997 676433 211 2467888999999986643
No 27
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=66.39 E-value=8.6 Score=28.42 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=14.5
Q ss_pred HHHHHHHhcC---CceEEEccChh
Q psy15752 35 NKIDDILQRN---KVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~~g---k~PIlVGGTgl 55 (110)
+.++.+.+.+ +++|+|||..+
T Consensus 152 ~~i~~lr~~~~~~~~~i~vGG~~~ 175 (201)
T cd02070 152 EVIEALKEAGLRDKVKVMVGGAPV 175 (201)
T ss_pred HHHHHHHHCCCCcCCeEEEECCcC
Confidence 4455555554 69999999864
No 28
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=62.22 E-value=16 Score=24.01 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=14.1
Q ss_pred HHHHHHHhcC--CceEEEccChh
Q psy15752 35 NKIDDILQRN--KVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~~g--k~PIlVGGTgl 55 (110)
+.+..+.++. +++|++||...
T Consensus 68 ~~~~~~~~~~p~~~~ivvGG~~~ 90 (125)
T cd02065 68 KLVIEALKELGIDIPVVVGGAHP 90 (125)
T ss_pred HHHHHHHHhcCCCCeEEEeCCcC
Confidence 5455555544 69999999743
No 29
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=60.05 E-value=7.9 Score=31.38 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCceEEEccChh
Q psy15752 35 NKIDDILQRNKVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTgl 55 (110)
+.|+.+++.|.+||++||.|.
T Consensus 176 ~aI~~LLe~G~IvI~~GgGGi 196 (313)
T PRK12454 176 EVIKALVENGFIVIASGGGGI 196 (313)
T ss_pred HHHHHHHHCCCEEEEeCCCcc
Confidence 567888999999999999743
No 30
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=58.65 E-value=24 Score=24.39 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=40.3
Q ss_pred HHHHHHH-HHHHHH--Hhc-CCceEEEccChhHHHHHHcccC--CC--C-C----chhhhcCHHHHHHHHHhcChHHHh
Q psy15752 28 QSYSGRI-NKIDDI--LQR-NKVPIIVGGTNYYIESLLWTIL--LD--N-K----TNINEQGEFTLYDMDKIRNLEHGR 93 (110)
Q Consensus 28 ~~f~~~a-~~i~~i--~~~-gk~PIlVGGTglY~~all~g~~--~p--~-~----~~~~~~g~~~l~~~L~~~DP~~a~ 93 (110)
..|.+.+ +.+.+. ... .--+||++|.|++-+-+.+-+. .+ . . .....-|...|++-|+. |+..+
T Consensus 53 ~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPGf~k~~f~~~l~~~~~~~~~~~i~~~~~s~~~~~gl~Evl~~--~~v~~ 129 (133)
T PF03464_consen 53 EKFFKEIAEALKKYFLVNFDDVKCIIIAGPGFTKEEFYKYLKAEARRKDKKKIVVVDTSSGGESGLNEVLKR--PEVQK 129 (133)
T ss_dssp HHHHHHHHHHHHHHCCCHTTTCSEEEEEESTTHHHHHHHHHHHHHHHHTCCEEEEEE-SSSCHHHHHHHHHS--HHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccEEEEECCHHHHHHHHHHHHHhhHhhcCCEEEEEECCCCCHHHHHHHHHh--hhHHH
Confidence 4677776 777666 333 4468999999999988886652 12 1 1 12234567788888776 54443
No 31
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=57.89 E-value=18 Score=24.47 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=18.6
Q ss_pred HHHHHHH-HHHHHHHhcC--CceEEEccChh
Q psy15752 28 QSYSGRI-NKIDDILQRN--KVPIIVGGTNY 55 (110)
Q Consensus 28 ~~f~~~a-~~i~~i~~~g--k~PIlVGGTgl 55 (110)
..+...+ +.++.+.+++ +++|++||+..
T Consensus 61 ~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 61 GGHMTLFPEVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 4555555 6666666552 68999999854
No 32
>PRK14556 pyrH uridylate kinase; Provisional
Probab=57.36 E-value=9.5 Score=29.92 Aligned_cols=16 Identities=38% Similarity=0.628 Sum_probs=13.1
Q ss_pred HHHhcCCceEEEccCh
Q psy15752 39 DILQRNKVPIIVGGTN 54 (110)
Q Consensus 39 ~i~~~gk~PIlVGGTg 54 (110)
+.+++|+++|++||||
T Consensus 131 ~~l~~g~vvi~~gg~G 146 (249)
T PRK14556 131 QELAKGRVLIFAGGTG 146 (249)
T ss_pred HHHhCCCEEEEECCCC
Confidence 4457899999999984
No 33
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=57.22 E-value=16 Score=28.72 Aligned_cols=55 Identities=9% Similarity=0.029 Sum_probs=35.7
Q ss_pred cCCccceecccCCCCCC-CCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 5 RLEGHFVVDFMRSWLDC-WEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 5 ~~vpHhli~~v~~~~d~-~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
++++++++|. ... ...+++.++.+.. ..+.++-+ ++-.|+-|||=.-++.+....
T Consensus 54 ~~~~RiyL~~----r~l~~G~i~a~ea~~~Li~~v~~~~~-~~~~IlEGGSISLl~~m~~~~ 110 (233)
T PF01745_consen 54 KGTRRIYLDD----RPLSDGIINAEEAHERLISEVNSYSA-HGGLILEGGSISLLNCMAQDP 110 (233)
T ss_dssp TT-EEEES--------GGG-S--HHHHHHHHHHHHHTTTT-SSEEEEEE--HHHHHHHHH-T
T ss_pred cccceeeecc----ccccCCCcCHHHHHHHHHHHHHhccc-cCceEEeCchHHHHHHHHhcc
Confidence 3566767766 333 3569999998888 88888877 888999999999999998774
No 34
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=56.99 E-value=26 Score=28.25 Aligned_cols=55 Identities=22% Similarity=0.075 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCceEEEccChhHHHHHHcccCCCCCc---hhhhcCHHHHHHHHHhc--ChHHHhc
Q psy15752 35 NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT---NINEQGEFTLYDMDKIR--NLEHGRD 94 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p~~~---~~~~~g~~~l~~~L~~~--DP~~a~~ 94 (110)
+++-+.+..|-+||+.|+++-=+..++ |+.+ -.+-...++|-+.|+.+ |++...+
T Consensus 245 EK~~~al~~g~VPI~~G~~~~~~~~~~-----P~~SfI~~~df~s~~~La~yl~~l~~n~~~Y~~ 304 (349)
T PF00852_consen 245 EKFWNALLAGTVPIYWGPPRPNYEEFA-----PPNSFIHVDDFKSPKELADYLKYLDKNDELYNK 304 (349)
T ss_dssp HHHHHHHHTTSEEEEES---TTHHHHS------GGGSEEGGGSSSHHHHHHHHHHHHT-HHHHH-
T ss_pred HHHHHHHHCCeEEEEECCEecccccCC-----CCCCccchhcCCCHHHHHHHHHHHhcCHHHHhh
Confidence 555577889999999997765555654 4322 22344677788888777 3554443
No 35
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=55.15 E-value=19 Score=26.65 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=19.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCceEEEccChh
Q psy15752 20 DCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNY 55 (110)
Q Consensus 20 d~~e~ysv~~f~~~a~~i~~i~~~gk~PIlVGGTgl 55 (110)
+..-..+...+.+..+.+++.-.+++++|+|||.-+
T Consensus 142 S~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~ 177 (197)
T TIGR02370 142 SALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPV 177 (197)
T ss_pred ccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhc
Confidence 444455555543222444443223468999999854
No 36
>PF10743 Phage_Cox: Regulatory phage protein cox; InterPro: IPR019679 Phage Cox proteins are expressed by Enterobacteria phages. The Cox protein is a 79-residue basic protein with a predicted strong helix-turn-helix DNA-binding motif. It inhibits integrative recombination and it activates site-specific excision of the HP1 genome from the Haemophilus influenzae chromosome, Hp1. Cox appears to function as a tetramer. Cox binding sites consist of two direct repeats of the consensus motif 5'-GGTMAWWWWA, one Cox tetramer binding to each motif. Cox binding interferes with the interaction of HP1 integrase with one of its binding sites, IBS5. This competition is central to directional control. Both Cox binding sites are needed for full inhibition of integration and for activating excision, because it plays a positive role in assembling the nucleoprotein complexes that produce excisive recombination, by inducing the formation of a critical conformation in those complexes [].
Probab=53.33 E-value=24 Score=23.68 Aligned_cols=30 Identities=17% Similarity=0.370 Sum_probs=25.5
Q ss_pred CCCCCCCHHHHHHHH----HHHHHHHhcCCceEE
Q psy15752 20 DCWEKETLQSYSGRI----NKIDDILQRNKVPII 49 (110)
Q Consensus 20 d~~e~ysv~~f~~~a----~~i~~i~~~gk~PIl 49 (110)
.|.+..++..|.... .++....++||+|++
T Consensus 8 ~p~d~v~~~~FA~~IGKt~sAVr~Mi~~gKLP~i 41 (87)
T PF10743_consen 8 YPSDAVTYEKFAEYIGKTPSAVRKMIKAGKLPVI 41 (87)
T ss_pred hhccccCHHHHHHHHCCCHHHHHHHHHcCCCCeE
Confidence 467788999998884 788999999999987
No 37
>COG0010 SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]
Probab=52.84 E-value=28 Score=27.57 Aligned_cols=39 Identities=18% Similarity=0.369 Sum_probs=30.2
Q ss_pred CCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcc
Q psy15752 25 ETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWT 63 (110)
Q Consensus 25 ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g 63 (110)
.+...+.... +.+.++..+++.||+.||=..=--+.+.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~pi~lGGDHsit~~~~~a 121 (305)
T COG0010 82 GDLEDAVDAIEEAVAELLSAGAFPIVLGGDHSITLGTVRA 121 (305)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCeeEEECCcchhhHHHHHH
Confidence 3777777777 88888999999999999976655555555
No 38
>PLN02615 arginase
Probab=52.35 E-value=30 Score=28.06 Aligned_cols=38 Identities=11% Similarity=0.238 Sum_probs=27.7
Q ss_pred CHHHHHHHH-HHHHHHHhc-CCceEEEccChhHHHHHHcc
Q psy15752 26 TLQSYSGRI-NKIDDILQR-NKVPIIVGGTNYYIESLLWT 63 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~-gk~PIlVGGTglY~~all~g 63 (110)
++....... +.+..++++ +++||+.||-+.---+++.+
T Consensus 127 ~~~~~~~~i~~~v~~ll~~~~~~Pi~LGGDHsit~~~ira 166 (338)
T PLN02615 127 DDDRLMNVISESVKLVMEEEPLRPLVLGGDHSISYPVVRA 166 (338)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEECcchHhhHHHHHH
Confidence 566666667 888888885 67999999997655444433
No 39
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=50.49 E-value=14 Score=29.03 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=13.6
Q ss_pred HHHhcCCceEEEccChh
Q psy15752 39 DILQRNKVPIIVGGTNY 55 (110)
Q Consensus 39 ~i~~~gk~PIlVGGTgl 55 (110)
+.+++|+++|+.||||-
T Consensus 120 ~~l~~grVvIf~gGtg~ 136 (238)
T COG0528 120 RHLEKGRVVIFGGGTGN 136 (238)
T ss_pred HHHHcCCEEEEeCCCCC
Confidence 34578999999998874
No 40
>cd02868 PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Like: Pseudouridine synthase, humanTRUB2_like. This group consists of eukaryotic pseudouridine synthases similar to human TruB pseudouridine synthase homolog 2 (TRUB2). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Probab=49.98 E-value=9.3 Score=29.46 Aligned_cols=15 Identities=27% Similarity=0.539 Sum_probs=13.2
Q ss_pred EccChhHHHHHHccc
Q psy15752 50 VGGTNYYIESLLWTI 64 (110)
Q Consensus 50 VGGTglY~~all~g~ 64 (110)
..|||.|++||...+
T Consensus 171 skGT~~YIRsL~~Di 185 (226)
T cd02868 171 INETQEYLRKLIHEI 185 (226)
T ss_pred ECCCHHHHHHHHHHH
Confidence 469999999999876
No 41
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function.
Probab=49.39 E-value=17 Score=26.74 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCceEEEccChhHH
Q psy15752 35 NKIDDILQRNKVPIIVGGTNYYI 57 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTglY~ 57 (110)
+.++.+.++|-.+++|||+-+-+
T Consensus 7 ~~~~~L~~~gv~~~ivGG~av~l 29 (181)
T PF09970_consen 7 EILEELNKRGVEYVIVGGAAVNL 29 (181)
T ss_pred HHHHHHHHcCCeEEEECHHHHHH
Confidence 56666666676799999996543
No 42
>KOG3222|consensus
Probab=48.96 E-value=26 Score=26.68 Aligned_cols=58 Identities=16% Similarity=0.022 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCceEEEccChhHHHHHHcccCCCCC-chhhhcCHHHHHHHHHhcChHHHh
Q psy15752 35 NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNK-TNINEQGEFTLYDMDKIRNLEHGR 93 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p~~-~~~~~~g~~~l~~~L~~~DP~~a~ 93 (110)
++++.....++-||+|=-|.+=+++| +|+.-|=. .=.++.|.+.|++.|...+-..|.
T Consensus 53 ~Kck~a~~~v~GpVlVeDT~l~f~al-~GlPGpYiKwFLk~lg~egl~~~l~~~~~k~A~ 111 (195)
T KOG3222|consen 53 EKCKVAAEIVKGPVLVEDTSLCFNAL-GGLPGPYIKWFLKKLGPEGLHEMLSKFENKSAY 111 (195)
T ss_pred HHhHHHHHhccCCEEEeechhhhhhc-cCCCcHHHHHHHHHhCcHHHHHHHHhhCCcceE
Confidence 44455555566699999999888887 57544422 334679999999999988766653
No 43
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=48.41 E-value=22 Score=31.33 Aligned_cols=65 Identities=14% Similarity=0.069 Sum_probs=43.6
Q ss_pred cCCceEEEccChhHHHHHHccc-CC-CCCc---hhhhcCHHHHHHHHHhcChHHHhcc-----cCCChhhhhhhccc
Q psy15752 43 RNKVPIIVGGTNYYIESLLWTI-LL-DNKT---NINEQGEFTLYDMDKIRNLEHGRDV-----LEQQRMQVTKWTEK 109 (110)
Q Consensus 43 ~gk~PIlVGGTglY~~all~g~-~~-p~~~---~~~~~g~~~l~~~L~~~DP~~a~~I-----~~nD~~Ri~r~~~~ 109 (110)
.||+-++.||+|..=..++..+ .. |..- ...+.....+..+|++.=| ..++ +-.|++|+.++.+.
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~--~~~~~~~igdVrD~~~~~~~~~~ 323 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFP--ELKLRFYIGDVRDRDRVERAMEG 323 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCC--CcceEEEecccccHHHHHHHHhc
Confidence 6999999999999988888886 44 2211 2244455566666776544 2233 34889999888764
No 44
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=47.64 E-value=3.2 Score=32.99 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=12.3
Q ss_pred EccChhHHHHHH--cccCCCC
Q psy15752 50 VGGTNYYIESLL--WTILLDN 68 (110)
Q Consensus 50 VGGTglY~~all--~g~~~p~ 68 (110)
||||.++++|-+ +|..||+
T Consensus 247 VGG~~llvKA~VhR~G~~FP~ 267 (269)
T PF03452_consen 247 VGGTALLVKADVHRDGAMFPP 267 (269)
T ss_pred cCceeEEEeeeeecCcccCCC
Confidence 677777777776 3455554
No 45
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=47.03 E-value=45 Score=30.52 Aligned_cols=77 Identities=13% Similarity=0.070 Sum_probs=51.5
Q ss_pred HHHH-HHHHHHHhcCCceEEEcc-ChhHHHHHHcccCCCCC-----chhhhcCHHHHHHHHHhcChHHHhcccCCChhhh
Q psy15752 31 SGRI-NKIDDILQRNKVPIIVGG-TNYYIESLLWTILLDNK-----TNINEQGEFTLYDMDKIRNLEHGRDVLEQQRMQV 103 (110)
Q Consensus 31 ~~~a-~~i~~i~~~gk~PIlVGG-TglY~~all~g~~~p~~-----~~~~~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri 103 (110)
+.++ +.|+.|.+.|-.++++-| .-.=.+++-..+-++.. ++.+....+++.+.+.+.+ .-+++.|.|+.||
T Consensus 552 R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~--VfAr~sPe~K~~i 629 (903)
T PRK15122 552 KESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERT--VFAKLTPLQKSRV 629 (903)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCC--EEEEeCHHHHHHH
Confidence 3568 999999999987777655 44444555554433311 2234455566766666544 5678999999999
Q ss_pred hhhccc
Q psy15752 104 TKWTEK 109 (110)
Q Consensus 104 ~r~~~~ 109 (110)
++.+.+
T Consensus 630 V~~Lq~ 635 (903)
T PRK15122 630 LKALQA 635 (903)
T ss_pred HHHHHh
Confidence 999864
No 46
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=46.78 E-value=32 Score=24.09 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=16.6
Q ss_pred HHHHHHH-HHHHHHHhcC--CceEEEccC
Q psy15752 28 QSYSGRI-NKIDDILQRN--KVPIIVGGT 53 (110)
Q Consensus 28 ~~f~~~a-~~i~~i~~~g--k~PIlVGGT 53 (110)
+.+...+ +.++.+.++| .++|++||.
T Consensus 64 ~~~~~~~~~~~~~L~~~g~~~i~vivGG~ 92 (132)
T TIGR00640 64 GGHLTLVPALRKELDKLGRPDILVVVGGV 92 (132)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 3344445 5666666655 588999984
No 47
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=45.82 E-value=19 Score=24.66 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=28.3
Q ss_pred HHHHHccc-CC--CCCchh----------------hhcCHHHHHHHHHhcChHHHhccc
Q psy15752 57 IESLLWTI-LL--DNKTNI----------------NEQGEFTLYDMDKIRNLEHGRDVL 96 (110)
Q Consensus 57 ~~all~g~-~~--p~~~~~----------------~~~g~~~l~~~L~~~DP~~a~~I~ 96 (110)
+++|+.|+ .+ .+.|+. ...-...+.++|.++||+.++++.
T Consensus 36 v~~Ll~~l~~l~v~dkppsiFqCqlkLf~qWf~~W~~~ern~fl~~Lee~D~~f~~k~~ 94 (98)
T PF14969_consen 36 VNGLLDSLENLSVQDKPPSIFQCQLKLFRQWFPKWSEEERNKFLEQLEEIDPDFVAKFY 94 (98)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhChHHHHHHH
Confidence 88999887 33 232321 234457899999999999998864
No 48
>PRK14556 pyrH uridylate kinase; Provisional
Probab=44.96 E-value=78 Score=24.80 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHHHhcC-CceEEEccChhHHHHHHc-ccCCCCCchh------hhcCHHHHHHHHHhcChHH-----
Q psy15752 25 ETLQSYSGRINKIDDILQRN-KVPIIVGGTNYYIESLLW-TILLDNKTNI------NEQGEFTLYDMDKIRNLEH----- 91 (110)
Q Consensus 25 ysv~~f~~~a~~i~~i~~~g-k~PIlVGGTglY~~all~-g~~~p~~~~~------~~~g~~~l~~~L~~~DP~~----- 91 (110)
++.....+.|+.|.++.+.| ++-|+|||=+.+=-+... |.-++....+ .....-.|.+-|.+..+.+
T Consensus 35 ~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~iNal~l~~~l~~~~~~~~v~sa 114 (249)
T PRK14556 35 INVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMINALALRDMLISEGVDAEVFSA 114 (249)
T ss_pred cCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEeec
Confidence 66666666668888888754 578888887655332222 1112222211 2233345666676444332
Q ss_pred ---HhcccCCChhhhhhhccc
Q psy15752 92 ---GRDVLEQQRMQVTKWTEK 109 (110)
Q Consensus 92 ---a~~I~~nD~~Ri~r~~~~ 109 (110)
..--+|-+++|+.+.+++
T Consensus 115 ~~~~~~~e~~~~~~~~~~l~~ 135 (249)
T PRK14556 115 KGVDGLLKVASAHEFNQELAK 135 (249)
T ss_pred cccCcCCCCCCHHHHHHHHhC
Confidence 112345589999998876
No 49
>PRK12353 putative amino acid kinase; Reviewed
Probab=44.67 E-value=18 Score=28.94 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCceEEEccChhH
Q psy15752 35 NKIDDILQRNKVPIIVGGTNYY 56 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTglY 56 (110)
+.++.+++.|.+||+.||+|.-
T Consensus 176 ~~i~~lL~~g~IpV~~g~gg~P 197 (314)
T PRK12353 176 EAIKTLVDAGQVVIAAGGGGIP 197 (314)
T ss_pred HHHHHHHHCCCEEEEcCCCCCC
Confidence 7888889999999999996443
No 50
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=44.15 E-value=52 Score=29.91 Aligned_cols=77 Identities=10% Similarity=0.086 Sum_probs=50.0
Q ss_pred HHHH-HHHHHHHhcCCceEEEccC-hhHHHHHHcccCCCCC-----chhhhcCHHHHHHHHHhcChHHHhcccCCChhhh
Q psy15752 31 SGRI-NKIDDILQRNKVPIIVGGT-NYYIESLLWTILLDNK-----TNINEQGEFTLYDMDKIRNLEHGRDVLEQQRMQV 103 (110)
Q Consensus 31 ~~~a-~~i~~i~~~gk~PIlVGGT-glY~~all~g~~~p~~-----~~~~~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri 103 (110)
+.++ +.|+.+.+.|-.++++-|- -.=.+++-..+-+... .+.+....+++.+.+.+.+ .-+++.|.|+.||
T Consensus 517 R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~--vfAr~~Pe~K~~i 594 (867)
T TIGR01524 517 KESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGIDANDFLLGADIEELSDEELARELRKYH--IFARLTPMQKSRI 594 (867)
T ss_pred chhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCe--EEEECCHHHHHHH
Confidence 3567 9999999999877776554 3444555544433211 1223445556666665544 5578999999999
Q ss_pred hhhccc
Q psy15752 104 TKWTEK 109 (110)
Q Consensus 104 ~r~~~~ 109 (110)
++++.+
T Consensus 595 V~~lq~ 600 (867)
T TIGR01524 595 IGLLKK 600 (867)
T ss_pred HHHHHh
Confidence 999854
No 51
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=44.14 E-value=60 Score=25.24 Aligned_cols=40 Identities=18% Similarity=0.374 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHhcC-CceEEEc-------cChhHHHHHHcccCCCC
Q psy15752 25 ETLQSYSGRINKIDDILQRN-KVPIIVG-------GTNYYIESLLWTILLDN 68 (110)
Q Consensus 25 ysv~~f~~~a~~i~~i~~~g-k~PIlVG-------GTglY~~all~g~~~p~ 68 (110)
|++..|. +.++.+.+.| .+||++| ++-.|+..+. |+.+|.
T Consensus 182 fd~~~~~---~~~~~~~~~g~~~pIi~GI~p~~s~~~~~~~~~~~-Gv~iP~ 229 (287)
T PF02219_consen 182 FDAEAFE---RFLDRLREAGIDVPIIPGIMPLTSAKSARFLAKLC-GVDIPD 229 (287)
T ss_dssp SSHHHHH---HHHHHHHHTTHTSEEEEEEE-HCCHHHHHHHHHHH-T-EEEH
T ss_pred CCHHHHH---HHHHHHHHcCCCCcEEEEEeccCCHHHHHHHHhcc-CccCCH
Confidence 5555554 3344555555 5899999 7778888777 887764
No 52
>COG4024 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.88 E-value=87 Score=24.09 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=41.3
Q ss_pred CCHHHHHHH---H-HHHHHHH----------------hcCCceEEEccChhHHHHHHcccCCCCCchhhhcCHHHHHHHH
Q psy15752 25 ETLQSYSGR---I-NKIDDIL----------------QRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMD 84 (110)
Q Consensus 25 ysv~~f~~~---a-~~i~~i~----------------~~gk~PIlVGGTglY~~all~g~~~p~~~~~~~~g~~~l~~~L 84 (110)
-.++.|++. + ++++.|+ .+|++-|++-|+ -.++|.+.. +..+.....|.
T Consensus 64 E~A~EfcrklIa~~e~l~~ILa~fGveee~~~~~~e~~~g~l~IV~n~~--~~K~L~k~~--v~a~~v~t~G~------- 132 (218)
T COG4024 64 ERAQEFCRKLIALDEILRSILALFGVEEETERDLDELFKGSLLIVVNGR--ERKALRKEL--VDAPIVQTGGP------- 132 (218)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcCcchhccccHHHHhcCCEEEEEChH--HHHHHHHhC--CCCceeeeCCC-------
Confidence 368889983 4 6665553 357777777766 345555322 22222233332
Q ss_pred HhcChHHHhcccCCChhhhhhhccc
Q psy15752 85 KIRNLEHGRDVLEQQRMQVTKWTEK 109 (110)
Q Consensus 85 ~~~DP~~a~~I~~nD~~Ri~r~~~~ 109 (110)
++|+-.++|+||=|....++++|
T Consensus 133 --L~~eDmR~Inp~~PEkaleGl~K 155 (218)
T COG4024 133 --LVPEDMRKINPNLPEKALEGLVK 155 (218)
T ss_pred --CCHHHHHHhCCCCcHHHHHHHHH
Confidence 45666677777766666666554
No 53
>KOG0185|consensus
Probab=42.23 E-value=14 Score=29.25 Aligned_cols=71 Identities=14% Similarity=0.245 Sum_probs=46.6
Q ss_pred CHHHHHHHH--HHHHHHHhcCCceEEEccCh-----hHHHHHHcccCCCCC--chhhhcCHHHHHHHHHhcChHHHhccc
Q psy15752 26 TLQSYSGRI--NKIDDILQRNKVPIIVGGTN-----YYIESLLWTILLDNK--TNINEQGEFTLYDMDKIRNLEHGRDVL 96 (110)
Q Consensus 26 sv~~f~~~a--~~i~~i~~~gk~PIlVGGTg-----lY~~all~g~~~p~~--~~~~~~g~~~l~~~L~~~DP~~a~~I~ 96 (110)
+++.|-+.| +-++.+.+-|+. +++|+|| -|++-+|..+.+... .+....++.++|+.|.++==..-+|++
T Consensus 59 ~lgSYGslaR~~nVeRi~kVgdn-tllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~rRsKmn 137 (256)
T KOG0185|consen 59 TLGSYGSLARYKNVERIFKVGDN-TLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYARRSKMN 137 (256)
T ss_pred ccccchhhhhhcCceeeEEecCc-eEEecCccHHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHHhhhccC
Confidence 455666666 666777776774 6788887 467777766544322 223678899999999886555555665
Q ss_pred C
Q psy15752 97 E 97 (110)
Q Consensus 97 ~ 97 (110)
|
T Consensus 138 P 138 (256)
T KOG0185|consen 138 P 138 (256)
T ss_pred c
Confidence 5
No 54
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=41.29 E-value=63 Score=29.62 Aligned_cols=77 Identities=8% Similarity=0.107 Sum_probs=51.6
Q ss_pred HHHH-HHHHHHHhcCCceEEE-ccChhHHHHHHcccCCCCC-----chhhhcCHHHHHHHHHhcChHHHhcccCCChhhh
Q psy15752 31 SGRI-NKIDDILQRNKVPIIV-GGTNYYIESLLWTILLDNK-----TNINEQGEFTLYDMDKIRNLEHGRDVLEQQRMQV 103 (110)
Q Consensus 31 ~~~a-~~i~~i~~~gk~PIlV-GGTglY~~all~g~~~p~~-----~~~~~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri 103 (110)
..++ +.|+.+.+.|-.++++ |-.-.=..++-..+-++.. ++.+....+++-+.+++.+ .-+++.|.|+.||
T Consensus 552 R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~--VfAr~sPe~K~~I 629 (902)
T PRK10517 552 KETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTT--LFARLTPMHKERI 629 (902)
T ss_pred hhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCc--EEEEcCHHHHHHH
Confidence 3457 9999999999877666 5455555566555544311 1224455666666666544 5678999999999
Q ss_pred hhhccc
Q psy15752 104 TKWTEK 109 (110)
Q Consensus 104 ~r~~~~ 109 (110)
++.+.+
T Consensus 630 V~~Lq~ 635 (902)
T PRK10517 630 VTLLKR 635 (902)
T ss_pred HHHHHH
Confidence 999864
No 55
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=40.97 E-value=50 Score=25.32 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHHHhcC-CceEEEc-------cChhHHHHHHcccCCCC
Q psy15752 25 ETLQSYSGRINKIDDILQRN-KVPIIVG-------GTNYYIESLLWTILLDN 68 (110)
Q Consensus 25 ysv~~f~~~a~~i~~i~~~g-k~PIlVG-------GTglY~~all~g~~~p~ 68 (110)
|++..|. +.++.+.+.| .+||++| ++-.|+...+ |..+|.
T Consensus 170 fd~~~~~---~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~-Gv~vP~ 217 (274)
T cd00537 170 FDNDAFL---RFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLC-GVEIPD 217 (274)
T ss_pred ccHHHHH---HHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhh-CCCCCH
Confidence 4444444 4455566677 7899999 5666777777 887775
No 56
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=40.36 E-value=41 Score=26.03 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=15.0
Q ss_pred EEEccChhHHHHHHcccC
Q psy15752 48 IIVGGTNYYIESLLWTIL 65 (110)
Q Consensus 48 IlVGGTglY~~all~g~~ 65 (110)
|+.||+..|++.|++|+-
T Consensus 94 VvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 94 VVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred EEeCCCchHHHHHHHhhc
Confidence 344999999999999973
No 57
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=39.97 E-value=40 Score=23.25 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCceEEEccCh
Q psy15752 35 NKIDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTg 54 (110)
+.+.+..++..+-|..||||
T Consensus 48 ~~l~~~~~~~D~VittGG~g 67 (144)
T PF00994_consen 48 EALRRALDRADLVITTGGTG 67 (144)
T ss_dssp HHHHHHHHTTSEEEEESSSS
T ss_pred HHHHhhhccCCEEEEcCCcC
Confidence 66677777889999999996
No 58
>cd00515 HAM1 NTPase/HAM1. This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides such as XTP to XMP and ITP to IMP, but not the standard nucleotides, in the presence of Mg or Mn ions. The enzyme exists as a homodimer. The HAM1 protein may be acting as an NTPase by hydrolyzing the HAP triphosphate.
Probab=39.95 E-value=15 Score=27.10 Aligned_cols=64 Identities=9% Similarity=0.091 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccCCCCCch-----hhhcCHHHHHHHHHh
Q psy15752 20 DCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTN-----INEQGEFTLYDMDKI 86 (110)
Q Consensus 20 d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p~~~~-----~~~~g~~~l~~~L~~ 86 (110)
++.|.-+ +|..-| .+...+.+.-..|+|+=-||||++|| +|++-|-... ....|.+.|.+.|..
T Consensus 33 ~~~E~~~--s~~enA~~KA~~a~~~~~~pviadDsGL~i~aL-~g~PG~ys~r~~~~~~~~~~~~~ll~~l~~ 102 (183)
T cd00515 33 DIEETGS--TFEENALLKARAAAEALGLPVLADDSGLCVDAL-NGFPGVYSARFAGEHDDAENNEKLLELLEG 102 (183)
T ss_pred CCCCCCC--CHHHHHHHHHHHHHHHHCCCEEEeccEEEEecc-CCCCchhhhhhcCCCCHHHHHHHHHHHccC
Confidence 4455555 788888 77777766656799999999999998 4653331111 234567777777765
No 59
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=39.49 E-value=46 Score=30.52 Aligned_cols=76 Identities=8% Similarity=0.085 Sum_probs=54.3
Q ss_pred HHH-HHHHHHHhcCCceEEEccChhHH-HHHHcccCC-CCC--------chhhhcCHHHHHHHHHhcChHHHhcccCCCh
Q psy15752 32 GRI-NKIDDILQRNKVPIIVGGTNYYI-ESLLWTILL-DNK--------TNINEQGEFTLYDMDKIRNLEHGRDVLEQQR 100 (110)
Q Consensus 32 ~~a-~~i~~i~~~gk~PIlVGGTglY~-~all~g~~~-p~~--------~~~~~~g~~~l~~~L~~~DP~~a~~I~~nD~ 100 (110)
.++ +.|+.+++.|-.++++-|=+--. .++-...-+ ... .+.+....+++.+.+.+++ ..+|..|.++
T Consensus 550 ~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~--VfARvsP~qK 627 (917)
T COG0474 550 EDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELS--VFARVSPEQK 627 (917)
T ss_pred ccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCc--EEEEcCHHHH
Confidence 457 99999999999988887655443 333333322 111 1224556678999999999 6679999999
Q ss_pred hhhhhhccc
Q psy15752 101 MQVTKWTEK 109 (110)
Q Consensus 101 ~Ri~r~~~~ 109 (110)
.||+++|.+
T Consensus 628 ~~IV~~lq~ 636 (917)
T COG0474 628 ARIVEALQK 636 (917)
T ss_pred HHHHHHHHh
Confidence 999999875
No 60
>KOG3148|consensus
Probab=39.08 E-value=46 Score=25.95 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=25.7
Q ss_pred CCHHHHHHHH-HHHHHHHhcCCceEEEccCh
Q psy15752 25 ETLQSYSGRI-NKIDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 25 ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTg 54 (110)
=|+++-+.++ +-=+.|.+.|.+-++|||-|
T Consensus 109 gna~dl~aec~~fe~kikeaggidlfvggig 139 (273)
T KOG3148|consen 109 GNAADLQAECDAFERKIKEAGGIDLFVGGIG 139 (273)
T ss_pred CchHHHHHHHHHHHHHHHhcCCeEEEeeccC
Confidence 4788999888 77778888999999999875
No 61
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=38.31 E-value=89 Score=21.64 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=26.9
Q ss_pred CCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccC
Q psy15752 20 DCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGT 53 (110)
Q Consensus 20 d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGT 53 (110)
|.....++.+|.+.. +.|+.+.+.+..+|+++-+
T Consensus 71 D~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~~ 105 (183)
T cd04501 71 DIIVNTSLEMIKDNIRSMVELAEANGIKVILASPL 105 (183)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 445556889999998 9999998888888887644
No 62
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]
Probab=37.67 E-value=92 Score=25.87 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=38.2
Q ss_pred HHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc--CCCCCc-----hhhhcCHHHHHHHHHh
Q psy15752 28 QSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI--LLDNKT-----NINEQGEFTLYDMDKI 86 (110)
Q Consensus 28 ~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~--~~p~~~-----~~~~~g~~~l~~~L~~ 86 (110)
..|.... +.++++. +.-.|+|.|.|||-+.+.+=+ ..|.-+ .....|...+|+-|+.
T Consensus 176 ~k~~~~i~~~~~~~~--~~~~iIvaGPGF~k~~~~~~~~~~~p~~~~~~~~~~s~~g~~gi~EvLkr 240 (352)
T COG1537 176 RKFFDEIAKALKEYA--NLDIIIVAGPGFAKEDFYDFLRERYPELANIVIEDTSTGGRAGINEVLKR 240 (352)
T ss_pred HHHHHHHHHHHHHhh--CCCeEEEeCCchHHHHHHHHHHHhcccccceEEEeccCcchHHHHHHHhh
Confidence 5677776 8888776 667899999999999988655 334322 2234455556665554
No 63
>PRK12354 carbamate kinase; Reviewed
Probab=37.52 E-value=29 Score=28.05 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCceEEEccCh
Q psy15752 35 NKIDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTg 54 (110)
+.|+.+++.|.+||.+||-|
T Consensus 166 ~~I~~Ll~~g~ivIa~GGGG 185 (307)
T PRK12354 166 RPIRWLLEKGHLVICAGGGG 185 (307)
T ss_pred HHHHHHHHCCCEEEEeCCCc
Confidence 67788889999888887764
No 64
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=36.70 E-value=66 Score=17.21 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHH-HHHHHHHhcCCceEEE
Q psy15752 23 EKETLQSYSGRI-NKIDDILQRNKVPIIV 50 (110)
Q Consensus 23 e~ysv~~f~~~a-~~i~~i~~~gk~PIlV 50 (110)
...+..+|...| +..+-+-+.|+.|=-|
T Consensus 3 ~~i~~~~~~d~a~rv~~f~~~ngRlPnyV 31 (33)
T PF09373_consen 3 GTISKEEYLDMASRVNNFYESNGRLPNYV 31 (33)
T ss_pred ceecHHHHHHHHHHHHHHHHHcCCCCCee
Confidence 467888999888 8888888889988443
No 65
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=36.16 E-value=69 Score=28.61 Aligned_cols=76 Identities=11% Similarity=0.065 Sum_probs=48.9
Q ss_pred HHH-HHHHHHHhcCCceEEE-ccChhHHHHHHcccCCCCC---ch-------hhhcCHHHHHHHHHhcChHHHhcccCCC
Q psy15752 32 GRI-NKIDDILQRNKVPIIV-GGTNYYIESLLWTILLDNK---TN-------INEQGEFTLYDMDKIRNLEHGRDVLEQQ 99 (110)
Q Consensus 32 ~~a-~~i~~i~~~gk~PIlV-GGTglY~~all~g~~~p~~---~~-------~~~~g~~~l~~~L~~~DP~~a~~I~~nD 99 (110)
.++ +.|+.+.+.|-.++++ |-.-.=.+++-..+-++.. .+ .+....+++-+.+.+.+ ..+++.|.|
T Consensus 445 ~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--vfAr~~Pe~ 522 (755)
T TIGR01647 445 HDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGTNIYTADVLLKGDNRDDLPSGELGEMVEDAD--GFAEVFPEH 522 (755)
T ss_pred hhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCcCHHHhcCCcchhhCCHHHHHHHHHhCC--EEEecCHHH
Confidence 457 8999999999766655 5555556666655533321 11 12233445666666554 556899999
Q ss_pred hhhhhhhccc
Q psy15752 100 RMQVTKWTEK 109 (110)
Q Consensus 100 ~~Ri~r~~~~ 109 (110)
+.|+++.+.+
T Consensus 523 K~~iV~~lq~ 532 (755)
T TIGR01647 523 KYEIVEILQK 532 (755)
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 66
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=36.13 E-value=55 Score=24.26 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCceEEEccChhHHHHHHcccCCC
Q psy15752 35 NKIDDILQRNKVPIIVGGTNYYIESLLWTILLD 67 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p 67 (110)
+.|+.+.+++++-|+.||...|++.++..+.++
T Consensus 75 ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~ 107 (203)
T TIGR02137 75 EFVDWLRERFQVVILSDTFYEFSQPLMRQLGFP 107 (203)
T ss_pred HHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCc
Confidence 677777777888999999999999999776544
No 67
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=35.76 E-value=40 Score=27.75 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=15.9
Q ss_pred H-HHHHHHHhcCCceEEEccChh
Q psy15752 34 I-NKIDDILQRNKVPIIVGGTNY 55 (110)
Q Consensus 34 a-~~i~~i~~~gk~PIlVGGTgl 55 (110)
+ +.+..+.++| .+|+|||.+.
T Consensus 55 ~~~~i~~~~~~~-~~vvvgGc~a 76 (430)
T TIGR01125 55 SIDTIGELADAG-KKVIVTGCLV 76 (430)
T ss_pred HHHHHHHHHhcC-CCEEEECCcc
Confidence 5 7777777665 5899999953
No 68
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=35.65 E-value=71 Score=22.79 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=16.5
Q ss_pred HHHHhcCCceEEEccChhHHHHHHcc
Q psy15752 38 DDILQRNKVPIIVGGTNYYIESLLWT 63 (110)
Q Consensus 38 ~~i~~~gk~PIlVGGTglY~~all~g 63 (110)
+..++.|+ +||++|++-+.+.+..-
T Consensus 83 ~~~l~~g~-~VI~~G~~~~~~~~~~~ 107 (186)
T PRK10078 83 DLWLHAGF-DVLVNGSRAHLPQARAR 107 (186)
T ss_pred HHHHhCCC-EEEEeChHHHHHHHHHH
Confidence 33455676 47778998887666543
No 69
>PF02001 DUF134: Protein of unknown function DUF134; InterPro: IPR002852 The bacterial and archaeal proteins in this family have no known function.
Probab=34.24 E-value=59 Score=22.37 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=17.7
Q ss_pred HHHHHH-HHHHHHHhcCCceEEEccC
Q psy15752 29 SYSGRI-NKIDDILQRNKVPIIVGGT 53 (110)
Q Consensus 29 ~f~~~a-~~i~~i~~~gk~PIlVGGT 53 (110)
.=...| ++|.+.+-.||.+|++.|-
T Consensus 76 ril~~ARkKiA~ALv~Gk~~i~i~GG 101 (106)
T PF02001_consen 76 RILESARKKIADALVEGKAIIIIEGG 101 (106)
T ss_pred HHHHHHHHHHHHHHHCCCceEEEcCC
Confidence 334458 8999999999966666553
No 70
>PRK12686 carbamate kinase; Reviewed
Probab=33.85 E-value=36 Score=27.57 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCceEEEccCh
Q psy15752 35 NKIDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTg 54 (110)
+.|+.++++|-+||.+||-|
T Consensus 174 ~~I~~Ll~~G~IpI~~Gggg 193 (312)
T PRK12686 174 DTIRTLVDGGNIVIACGGGG 193 (312)
T ss_pred HHHHHHHHCCCEEEEeCCCC
Confidence 67888999999999998854
No 71
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=33.74 E-value=56 Score=25.79 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=15.0
Q ss_pred HHHHHHHhc-----CCceEEEccC
Q psy15752 35 NKIDDILQR-----NKVPIIVGGT 53 (110)
Q Consensus 35 ~~i~~i~~~-----gk~PIlVGGT 53 (110)
+.|+.+... .++||++|||
T Consensus 187 ~~Ir~~~~~~~~~~~~v~IlYGGS 210 (251)
T COG0149 187 AFIRAVLAELFGAEEKVRILYGGS 210 (251)
T ss_pred HHHHHHHHHhcCCCCCeEEEEeCC
Confidence 666666655 5999999998
No 72
>PRK14822 nucleoside-triphosphatase; Provisional
Probab=33.63 E-value=17 Score=27.37 Aligned_cols=61 Identities=10% Similarity=-0.018 Sum_probs=42.5
Q ss_pred CHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccCCCCC-c-----hhhhcCHHHHHHHHHhc
Q psy15752 26 TLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNK-T-----NINEQGEFTLYDMDKIR 87 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p~~-~-----~~~~~g~~~l~~~L~~~ 87 (110)
+-..|..-| .+...+.+.-+.|+|+=-||||++|| .|++-+-. . .....+...|.++|...
T Consensus 43 ~g~t~~enA~~KA~~~~~~~~~pviaDDSGL~v~AL-~G~PGvysar~~g~~~~d~~~~~~ll~~l~~~ 110 (200)
T PRK14822 43 TGTTFEENAILKAEAAAKALNKPVIADDSGLEVDAL-NGAPGVYSARYAGEAKDDAANNEKLLKELGGV 110 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEeccEEEEccc-CCCCceechhhcCCCCCHHHHHHHHHHHhhCC
Confidence 445788888 77777766656799999999999998 57543311 1 12455677788888765
No 73
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=33.35 E-value=76 Score=25.68 Aligned_cols=20 Identities=10% Similarity=0.639 Sum_probs=12.9
Q ss_pred HHHHHHHhcCCceEEE-ccCh
Q psy15752 35 NKIDDILQRNKVPIIV-GGTN 54 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlV-GGTg 54 (110)
+.+++|.++=.+|++. ||||
T Consensus 194 ~~L~~I~~~~~iPLVLHGgSG 214 (307)
T PRK05835 194 ERLQEVKRLTNIPLVLHGASA 214 (307)
T ss_pred HHHHHHHHHhCCCEEEeCCCC
Confidence 4445555554677655 9999
No 74
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=33.18 E-value=48 Score=27.18 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCceEEEccChhHHHHHHcccCCCCCchh-----hh-cCHHHHHHHHHhcChH-HHhcccCCChhhh
Q psy15752 35 NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNI-----NE-QGEFTLYDMDKIRNLE-HGRDVLEQQRMQV 103 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p~~~~~-----~~-~g~~~l~~~L~~~DP~-~a~~I~~nD~~Ri 103 (110)
..+.++..++ .+|..||.. |.+.++.....+..... .. ......++.|...||. .+.=|....||.+
T Consensus 64 ~eF~~~~~~~-~~i~~~~~~-~~~~lL~kalg~~~a~~i~~~i~~~~~~~~~~~~l~~~~p~~l~~~i~~EhPQti 137 (339)
T COG1536 64 EEFEELFTEQ-AGINKGADE-YARELLEKALGEEKAESLLERITGSAIQTSPFDLLRKLDPSQLADLIKNEHPQTI 137 (339)
T ss_pred HHHHHHHHhc-cccccChHH-HHHHHHHHhCcHhHHHHHHHHhhhccccccHHHHhhhCCHHHHHHHHHccccHHH
Confidence 5555555443 468888888 99999988543322111 11 1122267777777777 4444443344443
No 75
>PRK14558 pyrH uridylate kinase; Provisional
Probab=33.17 E-value=47 Score=24.90 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHH-HHHHHHHhcCCceEEEccCh
Q psy15752 29 SYSGRI-NKIDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 29 ~f~~~a-~~i~~i~~~gk~PIlVGGTg 54 (110)
++.... +.+..+++.|.+||+.|++|
T Consensus 102 ~~~~~~~~~i~~ll~~g~vpV~~G~~~ 128 (231)
T PRK14558 102 SVEPINYDDIELYFRAGYIVIFAGGTS 128 (231)
T ss_pred hhhhhhHHHHHHHHHCCCEEEEECCCC
No 76
>PRK00120 dITP/XTP pyrophosphatase; Reviewed
Probab=32.82 E-value=20 Score=26.88 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=42.1
Q ss_pred CHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccCCCCCc------hhhhcCHHHHHHHHHhc
Q psy15752 26 TLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT------NINEQGEFTLYDMDKIR 87 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p~~~------~~~~~g~~~l~~~L~~~ 87 (110)
+-.+|..-| .+...+.+.-+.|+|+=-||||++|| +|++-+-.. .....+...|.++|+..
T Consensus 41 ~~~s~~enA~~KA~~~~~~~~~pviaDDSGL~i~aL-~g~PGvysar~~g~~~~~~~~~~~ll~~l~~~ 108 (196)
T PRK00120 41 TGTTFVENALIKARHAAKATGLPALADDSGLCVDAL-GGAPGVYSARYAGEGASDAANNEKLLEELKGV 108 (196)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEcCEEEEccc-CCCCchhhHHHhCcCCCHHHHHHHHHHHhhCC
Confidence 344688888 77776666656699999999999998 464323111 11455778888888765
No 77
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=32.20 E-value=64 Score=24.45 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=20.4
Q ss_pred CCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccC
Q psy15752 19 LDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGT 53 (110)
Q Consensus 19 ~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGT 53 (110)
+||... ++. +.+..+.+.|---|+||||
T Consensus 5 iDP~k~-------e~~~~ia~~v~~~gtDaI~VGGS 33 (205)
T TIGR01769 5 IDPEKS-------DEIEKIAKNAKDAGTDAIMVGGS 33 (205)
T ss_pred cCCCcH-------HHHHHHHHHHHhcCCCEEEEcCc
Confidence 577766 334 5556666778889999999
No 78
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=32.14 E-value=1.2e+02 Score=20.56 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHH-HHHHHHHhcCCceEEEc
Q psy15752 23 EKETLQSYSGRI-NKIDDILQRNKVPIIVG 51 (110)
Q Consensus 23 e~ysv~~f~~~a-~~i~~i~~~gk~PIlVG 51 (110)
...+..+|.... +.++.+.+++..+|+++
T Consensus 79 ~~~~~~~~~~~l~~li~~~~~~~~~vil~~ 108 (177)
T cd01822 79 RGIPPDQTRANLRQMIETAQARGAPVLLVG 108 (177)
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456888999988 99999988877777776
No 79
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=32.10 E-value=61 Score=22.57 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCceEE---EccChhHHHHHHc
Q psy15752 35 NKIDDILQRNKVPII---VGGTNYYIESLLW 62 (110)
Q Consensus 35 ~~i~~i~~~gk~PIl---VGGTglY~~all~ 62 (110)
+.|+.++++|+.+|+ ++|...+.+++..
T Consensus 82 ~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~ 112 (180)
T TIGR03263 82 SPVEEALAAGKDVLLEIDVQGARQVKKKFPD 112 (180)
T ss_pred HHHHHHHHCCCeEEEECCHHHHHHHHHhCCC
Confidence 567888899999988 6788888888754
No 80
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=31.74 E-value=47 Score=22.51 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=19.7
Q ss_pred CCHHHHHHHH-HHHHHHHhcC---CceEEEccCh
Q psy15752 25 ETLQSYSGRI-NKIDDILQRN---KVPIIVGGTN 54 (110)
Q Consensus 25 ysv~~f~~~a-~~i~~i~~~g---k~PIlVGGTg 54 (110)
|+.-.|+.+| +.+.+.+... +.-++++.||
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tG 35 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTG 35 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTT
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 5566788888 6666665544 6777877666
No 81
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=31.51 E-value=63 Score=24.34 Aligned_cols=31 Identities=19% Similarity=0.471 Sum_probs=17.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcC-CceEEEccCh
Q psy15752 21 CWEKETLQSYSGRINKIDDILQRN-KVPIIVGGTN 54 (110)
Q Consensus 21 ~~e~ysv~~f~~~a~~i~~i~~~g-k~PIlVGGTg 54 (110)
..-..+...+. +.++.+.+.+ +++|+|||..
T Consensus 147 ~~~~~~~~~~~---~~i~~L~~~~~~~~i~vGG~~ 178 (213)
T cd02069 147 GLLVPSLDEMV---EVAEEMNRRGIKIPLLIGGAA 178 (213)
T ss_pred cchhccHHHHH---HHHHHHHhcCCCCeEEEEChh
Confidence 34445555554 3344444433 7999999974
No 82
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=31.49 E-value=51 Score=23.35 Aligned_cols=26 Identities=19% Similarity=0.616 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCceEEEccChhHHHHHHcc
Q psy15752 35 NKIDDILQRNKVPIIVGGTNYYIESLLWT 63 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTglY~~all~g 63 (110)
+..+.++..+... -||| |||++=+..
T Consensus 77 k~y~~Lf~~Nd~~--kGGS-fYLQSKV~r 102 (127)
T PF03656_consen 77 KRYKHLFKANDPS--KGGS-FYLQSKVFR 102 (127)
T ss_dssp HHHHHHHHHT-CC--CTS--HHHHHHHHH
T ss_pred HHHHHHHhccCCC--cCCC-HHHHHHHHH
Confidence 5566666666643 5777 999998754
No 83
>TIGR00042 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family. Saccharomyces cerevisiae HAM1 protects against the mutagenic effects of the base analog 6-N-hydroxylaminopurine, which can be a natural product of monooxygenase activity on adenine. Methanococcus jannaschii MJ0226 and E. coli RdgB are also characterized as pyrophosphatases active against non-standard purines NTPs. E. coli RdgB appears to act by intercepting non-canonical deoxyribonucleotide triphosphates from replication precursor pools.
Probab=31.34 E-value=23 Score=26.32 Aligned_cols=63 Identities=10% Similarity=0.028 Sum_probs=40.5
Q ss_pred CCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccCCCCCch-h--hhcCHHHHHHHHHhc
Q psy15752 24 KETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTN-I--NEQGEFTLYDMDKIR 87 (110)
Q Consensus 24 ~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p~~~~-~--~~~g~~~l~~~L~~~ 87 (110)
+-+-..|..-| .+.+.+.+.=+.|+|+=-|||+++|| +|.+-+-... . .....+.|.++|+.+
T Consensus 36 ee~g~t~~enA~~KA~~~~~~~~~pvlaDDSGL~v~AL-~G~PGvysar~~~~d~~~~~~ll~~l~~~ 102 (184)
T TIGR00042 36 EETGLTFEENALLKAKHAAKILNKPVIAEDSGLFVDAL-NGFPGIYSARYQGTDIGNLEKILKLLEGV 102 (184)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEcccEEEEhhc-CCCcchhhHHHhcChHHHHHHHHHHcCCC
Confidence 44556788888 77776666656799999999999998 4643231111 1 122236677777654
No 84
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=31.29 E-value=66 Score=25.08 Aligned_cols=12 Identities=8% Similarity=-0.103 Sum_probs=9.2
Q ss_pred ceEEEccChhHH
Q psy15752 46 VPIIVGGTNYYI 57 (110)
Q Consensus 46 ~PIlVGGTglY~ 57 (110)
.-=|+||||||=
T Consensus 23 ~i~iI~GsGl~~ 34 (272)
T PRK08202 23 EIGLILGSGLGA 34 (272)
T ss_pred CEEEEeCCchhH
Confidence 345789999994
No 85
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=30.79 E-value=38 Score=25.63 Aligned_cols=19 Identities=37% Similarity=0.793 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCceEEEccC
Q psy15752 35 NKIDDILQRNKVPIIVGGT 53 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGT 53 (110)
+.|+++-++-+.||+.||-
T Consensus 134 kvi~~i~~~t~~piIAGGL 152 (181)
T COG1954 134 KVIKEITEKTHIPIIAGGL 152 (181)
T ss_pred HHHHHHHHhcCCCEEeccc
Confidence 6788898999999999984
No 86
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=30.54 E-value=84 Score=23.16 Aligned_cols=27 Identities=15% Similarity=0.504 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCce-EEEc----cChhHHHHHH
Q psy15752 35 NKIDDILQRNKVP-IIVG----GTNYYIESLL 61 (110)
Q Consensus 35 ~~i~~i~~~gk~P-IlVG----GTglY~~all 61 (110)
+++.++.++|-.| |||| |.+||++-++
T Consensus 55 ~a~~~L~~~Gf~PDvI~~H~GWGe~Lflkdv~ 86 (171)
T PF12000_consen 55 RAARQLRAQGFVPDVIIAHPGWGETLFLKDVF 86 (171)
T ss_pred HHHHHHHHcCCCCCEEEEcCCcchhhhHHHhC
Confidence 7888899999977 6666 8899999987
No 87
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=30.50 E-value=54 Score=23.62 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=13.4
Q ss_pred hcCCceEEEccChhHHHH
Q psy15752 42 QRNKVPIIVGGTNYYIES 59 (110)
Q Consensus 42 ~~gk~PIlVGGTglY~~a 59 (110)
..++..++.|||.+...-
T Consensus 20 ~~~~a~~vaGgT~l~~~~ 37 (171)
T PF00941_consen 20 KGPDARIVAGGTDLGVQM 37 (171)
T ss_dssp HGTTEEEESS-TTHHHHH
T ss_pred cCCCCEEEeCCCccchhc
Confidence 567889999999987644
No 88
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=30.43 E-value=1.2e+02 Score=24.51 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCceEEEccChh----HHHHHHccc
Q psy15752 35 NKIDDILQRNKVPIIVGGTNY----YIESLLWTI 64 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTgl----Y~~all~g~ 64 (110)
..+..+...++.-+++||||. .++||+.-+
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 455666677888899998884 777777544
No 89
>COG1687 AzlD Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]
Probab=29.96 E-value=97 Score=21.53 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHH
Q psy15752 22 WEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYI 57 (110)
Q Consensus 22 ~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~ 57 (110)
..++...+....+ -..-..|+++-.-=+.+||++|+
T Consensus 63 ~~~~Gipei~a~~~V~~Lh~wkkn~~LSI~~GT~~Ym 99 (106)
T COG1687 63 LGPHGIPEILAAAIVAALHLWKKNMLLSIALGTILYM 99 (106)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcceeEEeccccchhh
Confidence 3466666777776 66677888888888899999996
No 90
>PRK14821 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=29.87 E-value=34 Score=25.38 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=41.3
Q ss_pred HHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccCCCC-CchhhhcCHHHHHHHHHhc
Q psy15752 28 QSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDN-KTNINEQGEFTLYDMDKIR 87 (110)
Q Consensus 28 ~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p~-~~~~~~~g~~~l~~~L~~~ 87 (110)
..|..-| .+...+.+.-..|+|+=-|||+++|| +|.+-+- ..-....|.+.|.+.|+.+
T Consensus 40 ~t~~enA~~KA~~~~~~~~~pvlaDDSGL~v~aL-~g~PGvysa~~~~~~~~~~ll~~l~~~ 100 (184)
T PRK14821 40 DTLEEVAAFGAKWVYNKLNRPVIVEDSGLFIEAL-NGFPGPYSAFVYKTLGNEGILKLLEGE 100 (184)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEcCEEeehhh-CCCCcHHHHHHHHHHHHHHHHHHccCC
Confidence 4788888 77777777666799999999999998 4643221 1112455777777777654
No 91
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=29.80 E-value=71 Score=21.34 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=13.0
Q ss_pred HHHHHHHhcC-CceEEEccCh
Q psy15752 35 NKIDDILQRN-KVPIIVGGTN 54 (110)
Q Consensus 35 ~~i~~i~~~g-k~PIlVGGTg 54 (110)
+.++.+.+++ .++|++||..
T Consensus 57 ~~~~~ik~~~p~~~iv~GG~~ 77 (127)
T cd02068 57 ELAKIAKEVLPNVIVVVGGPH 77 (127)
T ss_pred HHHHHHHHHCCCCEEEECCcc
Confidence 4444444433 5999999975
No 92
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=29.77 E-value=1e+02 Score=28.47 Aligned_cols=79 Identities=9% Similarity=0.081 Sum_probs=48.4
Q ss_pred HHHH-HHHHHHHhcCCceEEEccCh-hHHHHHHcccC-CCCCch------------------------------hhhcCH
Q psy15752 31 SGRI-NKIDDILQRNKVPIIVGGTN-YYIESLLWTIL-LDNKTN------------------------------INEQGE 77 (110)
Q Consensus 31 ~~~a-~~i~~i~~~gk~PIlVGGTg-lY~~all~g~~-~p~~~~------------------------------~~~~g~ 77 (110)
+.++ +.|+.+.+.|-.++++-|-. .-..++...+. +++... .+....
T Consensus 570 r~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~l~~ 649 (997)
T TIGR01106 570 RAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTS 649 (997)
T ss_pred hHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhhCCH
Confidence 4578 99999999998887775544 44555555542 222110 011122
Q ss_pred HHHHHHHHhcChHHHhcccCCChhhhhhhccc
Q psy15752 78 FTLYDMDKIRNLEHGRDVLEQQRMQVTKWTEK 109 (110)
Q Consensus 78 ~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~~ 109 (110)
+++-+.+.+.+-...+++.|.|+.||++.+.+
T Consensus 650 ~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~ 681 (997)
T TIGR01106 650 EQLDEILKYHTEIVFARTSPQQKLIIVEGCQR 681 (997)
T ss_pred HHHHHHHHhcCCEEEEECCHHHHHHHHHHHHH
Confidence 34444444443335679999999999998864
No 93
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=29.71 E-value=56 Score=22.34 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCceEEEccChh
Q psy15752 35 NKIDDILQRNKVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTgl 55 (110)
+.+++..++-.+-|..||||.
T Consensus 50 ~~i~~~~~~~DlvittGG~g~ 70 (133)
T cd00758 50 AALIEASREADLVLTTGGTGV 70 (133)
T ss_pred HHHHHHHhcCCEEEECCCCCC
Confidence 555555566778889999973
No 94
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=29.06 E-value=1.2e+02 Score=17.18 Aligned_cols=25 Identities=8% Similarity=0.336 Sum_probs=18.5
Q ss_pred CCHHHHHHHH-HHHHHHHhcCCceEEEc
Q psy15752 25 ETLQSYSGRI-NKIDDILQRNKVPIIVG 51 (110)
Q Consensus 25 ysv~~f~~~a-~~i~~i~~~gk~PIlVG 51 (110)
+|+.++.... +.++.+.. |. ||++-
T Consensus 2 v~~te~r~~~~~~l~~v~~-~~-pv~It 27 (52)
T TIGR01552 2 VSLSEAKNKLGELLKRVRD-GE-PVTIT 27 (52)
T ss_pred cCHHHHHHHHHHHHHHHHC-CC-CEEEE
Confidence 5788898888 88887754 55 77763
No 95
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.76 E-value=1.2e+02 Score=24.25 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=24.7
Q ss_pred HHHHHH-HHHHHHHhcCCce----EEEc---cChhHHHHHHc
Q psy15752 29 SYSGRI-NKIDDILQRNKVP----IIVG---GTNYYIESLLW 62 (110)
Q Consensus 29 ~f~~~a-~~i~~i~~~gk~P----IlVG---GTglY~~all~ 62 (110)
...+.. +.++.+.++|..| |+|| .|-.|+++-..
T Consensus 12 ~i~~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k 53 (282)
T PRK14166 12 KIKEELKEKNQFLKSKGIESCLAVILVGDNPASQTYVKSKAK 53 (282)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHH
Confidence 344555 7777776677766 5678 89999999775
No 96
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=28.62 E-value=1.6e+02 Score=19.74 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=29.7
Q ss_pred CCCCCCCHHHHHHHH-HHHHHHHhcCCceEEE---ccChhHHHH
Q psy15752 20 DCWEKETLQSYSGRI-NKIDDILQRNKVPIIV---GGTNYYIES 59 (110)
Q Consensus 20 d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlV---GGTglY~~a 59 (110)
+....-+..+|.+.. +.++++.+...+-|++ |||-+-+-.
T Consensus 33 ~~~~~~~~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp~n~~~ 76 (122)
T cd00006 33 DFPPGESPDDLLEKIKAALAELDSGEGVLILTDLFGGSPNNAAA 76 (122)
T ss_pred EeCCCCCHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHHHHH
Confidence 445667899999998 8888876555666666 999876433
No 97
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=28.51 E-value=1.7e+02 Score=19.25 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=25.2
Q ss_pred ccCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEE
Q psy15752 4 SRLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIV 50 (110)
Q Consensus 4 ~~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlV 50 (110)
..++.|+-+.+ .|.. ..........+ +.|+...++|+ ||+|
T Consensus 45 ~~~~~~~~~~~----~D~~-~~~~~~~~~~~~~~i~~~~~~~~-~vlV 86 (139)
T cd00127 45 LSDFNYLYVPI----LDLP-SQDISKYFDEAVDFIDDAREKGG-KVLV 86 (139)
T ss_pred CCCceEEEEEc----eeCC-CCChHHHHHHHHHHHHHHHhcCC-cEEE
Confidence 34556666666 3444 34455555666 88888877665 6775
No 98
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.48 E-value=13 Score=24.66 Aligned_cols=48 Identities=13% Similarity=0.238 Sum_probs=29.5
Q ss_pred CccceecccCCCCCCCCCCCHHHHHHHH--HHHHHHHh-----cCCceEEEccChhHHH
Q psy15752 7 EGHFVVDFMRSWLDCWEKETLQSYSGRI--NKIDDILQ-----RNKVPIIVGGTNYYIE 58 (110)
Q Consensus 7 vpHhli~~v~~~~d~~e~ysv~~f~~~a--~~i~~i~~-----~gk~PIlVGGTglY~~ 58 (110)
.|-+.+-. ....+.|+|.+=.++. -.+.++-+ -+.+-|+-=|||||+.
T Consensus 8 MPtY~Y~c----~~cg~~~dvvq~~~ddplt~ce~c~a~~kk~l~~vgi~fKGSGfYvt 62 (82)
T COG2331 8 MPTYSYEC----TECGNRFDVVQAMTDDPLTTCEECGARLKKLLNAVGIVFKGSGFYVT 62 (82)
T ss_pred ccceEEee----cccchHHHHHHhcccCccccChhhChHHHHhhccceEEEecceEEEe
Confidence 45566666 5667777776655542 33333322 1556788899999975
No 99
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=28.17 E-value=50 Score=21.10 Aligned_cols=30 Identities=0% Similarity=-0.089 Sum_probs=22.7
Q ss_pred hhcCHHHHHHHHHhcChHHHhcccCCChhh
Q psy15752 73 NEQGEFTLYDMDKIRNLEHGRDVLEQQRMQ 102 (110)
Q Consensus 73 ~~~g~~~l~~~L~~~DP~~a~~I~~nD~~R 102 (110)
|..-.+++=+.|..=||..|+++....++|
T Consensus 7 E~r~L~eiEr~L~~~DP~fa~~l~~~~~~~ 36 (82)
T PF11239_consen 7 EQRRLEEIERQLRADDPRFAARLRSGRPRR 36 (82)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHhccCCCCC
Confidence 344556777789999999999998865554
No 100
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=28.06 E-value=66 Score=22.55 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=12.2
Q ss_pred HHHHHHHhc--CCceEEEccCh
Q psy15752 35 NKIDDILQR--NKVPIIVGGTN 54 (110)
Q Consensus 35 ~~i~~i~~~--gk~PIlVGGTg 54 (110)
+.++.+.+. ..++|+|||+-
T Consensus 73 ~~~~~L~~~~~~~~~i~vGG~~ 94 (137)
T PRK02261 73 GLREKCIEAGLGDILLYVGGNL 94 (137)
T ss_pred HHHHHHHhcCCCCCeEEEECCC
Confidence 334444333 24789999984
No 101
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=28.02 E-value=55 Score=24.57 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=16.9
Q ss_pred HHHHHHHhcCCceEEEccCh
Q psy15752 35 NKIDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTg 54 (110)
+.+.+.++.|.+||+.|+.|
T Consensus 111 ~~l~~~l~~g~ipV~~g~~G 130 (231)
T cd04254 111 RRAIRHLEKGRVVIFAGGTG 130 (231)
T ss_pred HHHHHHHHCCCEEEEECCcC
Confidence 77788889999999998764
No 102
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.85 E-value=1.3e+02 Score=24.03 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=24.6
Q ss_pred HHHHHHH-HHHHHHHhc-CCce----EEEc---cChhHHHHHHc
Q psy15752 28 QSYSGRI-NKIDDILQR-NKVP----IIVG---GTNYYIESLLW 62 (110)
Q Consensus 28 ~~f~~~a-~~i~~i~~~-gk~P----IlVG---GTglY~~all~ 62 (110)
....+.. +.++.+.++ |+.| |+|| .|..|++.-..
T Consensus 12 ~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k 55 (284)
T PRK14179 12 QKMQAELAEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKER 55 (284)
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEeCCChhHHHHHHHHHH
Confidence 3444555 667776555 6666 7889 89999998764
No 103
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=27.18 E-value=1.8e+02 Score=20.79 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=24.8
Q ss_pred CCCCCCCHHHHHHHH-HHHHHHHhcCCceEEE
Q psy15752 20 DCWEKETLQSYSGRI-NKIDDILQRNKVPIIV 50 (110)
Q Consensus 20 d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlV 50 (110)
|.....++.+|.... +.++.+.++|..||++
T Consensus 83 D~~~~~~~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 83 DGLRGFPPQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred cCccCCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 444567899999888 8888888888777776
No 104
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=26.75 E-value=90 Score=22.01 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=8.5
Q ss_pred CceEEEccCh
Q psy15752 45 KVPIIVGGTN 54 (110)
Q Consensus 45 k~PIlVGGTg 54 (110)
.+||+|||.-
T Consensus 81 ~v~vivGG~~ 90 (128)
T cd02072 81 DILLYVGGNL 90 (128)
T ss_pred CCeEEEECCC
Confidence 5899999973
No 105
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=26.61 E-value=95 Score=20.11 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=16.4
Q ss_pred HHHHHHHhc-CCceEEEccCh--hHHHHHH
Q psy15752 35 NKIDDILQR-NKVPIIVGGTN--YYIESLL 61 (110)
Q Consensus 35 ~~i~~i~~~-gk~PIlVGGTg--lY~~all 61 (110)
+.++.+.+. .+++|++||.. ..-+.++
T Consensus 70 ~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l 99 (121)
T PF02310_consen 70 RLARAIKERNPNIPIVVGGPHATADPEEIL 99 (121)
T ss_dssp HHHHHHHTTCTTSEEEEEESSSGHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCchhcChHHHh
Confidence 444444443 46899999975 4444444
No 106
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=26.61 E-value=29 Score=23.67 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=8.8
Q ss_pred CceEEEccChh
Q psy15752 45 KVPIIVGGTNY 55 (110)
Q Consensus 45 k~PIlVGGTgl 55 (110)
.+-+|+||||.
T Consensus 3 ~vvlvAGG~GI 13 (156)
T PF08030_consen 3 NVVLVAGGSGI 13 (156)
T ss_dssp EEEEEEEGGGH
T ss_pred EEEEEecCcCH
Confidence 35688999995
No 107
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=26.47 E-value=66 Score=26.43 Aligned_cols=9 Identities=44% Similarity=0.589 Sum_probs=4.9
Q ss_pred CCccceecc
Q psy15752 6 LEGHFVVDF 14 (110)
Q Consensus 6 ~vpHhli~~ 14 (110)
+||||.+|+
T Consensus 62 gIp~~v~d~ 70 (356)
T PF03054_consen 62 GIPHYVVDL 70 (356)
T ss_dssp T--EEEEET
T ss_pred CCCEEEECh
Confidence 567777776
No 108
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=26.43 E-value=1e+02 Score=20.83 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=27.2
Q ss_pred CCCCCCCHHHHHHHH-HHHHHHHhcCCceEEE---ccChhHH
Q psy15752 20 DCWEKETLQSYSGRI-NKIDDILQRNKVPIIV---GGTNYYI 57 (110)
Q Consensus 20 d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlV---GGTglY~ 57 (110)
+....-+..+|.+.. +.++++-+...+-|++ |||-.=.
T Consensus 34 ~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~ 75 (116)
T TIGR00824 34 PFVPGENAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNA 75 (116)
T ss_pred EcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHH
Confidence 445567788999888 8888875555566665 9998543
No 109
>PRK15016 isochorismate synthase EntC; Provisional
Probab=26.38 E-value=77 Score=26.48 Aligned_cols=25 Identities=20% Similarity=0.493 Sum_probs=21.8
Q ss_pred HHHHHHH-HHHHHHHhcC-CceEEEcc
Q psy15752 28 QSYSGRI-NKIDDILQRN-KVPIIVGG 52 (110)
Q Consensus 28 ~~f~~~a-~~i~~i~~~g-k~PIlVGG 52 (110)
..|...+ +.+++..+.| ..||+||.
T Consensus 51 ~~~~~~~~~~~~~a~~~g~~~p~~vGa 77 (391)
T PRK15016 51 SPFQQKLAALFADAKAQGIKNPVMVGA 77 (391)
T ss_pred hhHHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 5888888 8999998888 79999993
No 110
>PRK10638 glutaredoxin 3; Provisional
Probab=26.37 E-value=1.1e+02 Score=18.84 Aligned_cols=36 Identities=17% Similarity=0.100 Sum_probs=21.7
Q ss_pred ccCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEE-EccC
Q psy15752 4 SRLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPII-VGGT 53 (110)
Q Consensus 4 ~~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIl-VGGT 53 (110)
+.++++..+|+ +... ++ +.+.++...+.+|.| +||.
T Consensus 24 ~~gi~y~~~dv-----~~~~---------~~~~~l~~~~g~~~vP~i~~~g~ 61 (83)
T PRK10638 24 SKGVSFQEIPI-----DGDA---------AKREEMIKRSGRTTVPQIFIDAQ 61 (83)
T ss_pred HcCCCcEEEEC-----CCCH---------HHHHHHHHHhCCCCcCEEEECCE
Confidence 45778777776 2211 23 445555567778887 6765
No 111
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=26.37 E-value=85 Score=24.29 Aligned_cols=19 Identities=37% Similarity=0.607 Sum_probs=13.2
Q ss_pred HHHHHHHhc------CCceEEEccC
Q psy15752 35 NKIDDILQR------NKVPIIVGGT 53 (110)
Q Consensus 35 ~~i~~i~~~------gk~PIlVGGT 53 (110)
..|.+..++ .++|||.|||
T Consensus 183 ~~ir~~l~~~~~~~~~~~~IlYGGS 207 (242)
T cd00311 183 AFIRKLLAELYGEVAEKVRILYGGS 207 (242)
T ss_pred HHHHHHHHHhcccccCceeEEECCC
Confidence 555554442 4789999998
No 112
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=26.37 E-value=1.6e+02 Score=20.25 Aligned_cols=28 Identities=4% Similarity=0.165 Sum_probs=22.3
Q ss_pred CCCHHHHHHHH-HHHHHHHhcCCceEEEc
Q psy15752 24 KETLQSYSGRI-NKIDDILQRNKVPIIVG 51 (110)
Q Consensus 24 ~ysv~~f~~~a-~~i~~i~~~gk~PIlVG 51 (110)
..++.+|.+.. ..|+.+.+.+...|+++
T Consensus 84 ~~~~~~~~~~~~~~i~~i~~~~~~vil~~ 112 (185)
T cd01832 84 GTDPDTYRADLEEAVRRLRAAGARVVVFT 112 (185)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 68899999998 99999986666656654
No 113
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=26.19 E-value=22 Score=28.68 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=25.9
Q ss_pred cceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChh
Q psy15752 9 HFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNY 55 (110)
Q Consensus 9 Hhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTgl 55 (110)
||+.|+ +++.+.++++ + +.|+.++++|. .+|+-|..+
T Consensus 163 ~~l~g~----~~~~~~v~~g-----i~~~I~~~~~~g~-s~IiEGvhl 200 (301)
T PRK04220 163 PVIYGF----ERHVEPVSVG-----VEAVIERALKEGI-SVIIEGVHI 200 (301)
T ss_pred hhhhhH----HHHHHHHHHH-----HHHHHHHHHHhCC-cEEEecCCC
Confidence 677777 5666666666 5 78888888774 567777755
No 114
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=26.14 E-value=1.4e+02 Score=22.62 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=20.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCceEEE-ccChh
Q psy15752 20 DCWEKETLQSYSGRINKIDDILQRNKVPIIV-GGTNY 55 (110)
Q Consensus 20 d~~e~ysv~~f~~~a~~i~~i~~~gk~PIlV-GGTgl 55 (110)
+.+..++.....+.++.|.++..+|+-.|+| ||.+-
T Consensus 13 ~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~ 49 (251)
T cd04242 13 DEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVA 49 (251)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchh
Confidence 4444555555555557777777777555555 65443
No 115
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=26.09 E-value=2e+02 Score=21.85 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCceEEEccChhHHHHHHcccCCC
Q psy15752 35 NKIDDILQRNKVPIIVGGTNYYIESLLWTILLD 67 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p 67 (110)
+.|..+++.|..||||=|.|-+++.++..+.++
T Consensus 19 ~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~ 51 (248)
T cd04252 19 ASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVE 51 (248)
T ss_pred HHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCC
Confidence 556667777888899999999999999765443
No 116
>PRK06153 hypothetical protein; Provisional
Probab=26.02 E-value=66 Score=27.02 Aligned_cols=44 Identities=27% Similarity=0.496 Sum_probs=28.2
Q ss_pred CCCCCCCHHHHHHHH-HH--H---HHHHhcCCceEE-EccChhHHHHHHcc
Q psy15752 20 DCWEKETLQSYSGRI-NK--I---DDILQRNKVPII-VGGTNYYIESLLWT 63 (110)
Q Consensus 20 d~~e~ysv~~f~~~a-~~--i---~~i~~~gk~PIl-VGGTglY~~all~g 63 (110)
...++=||..|..-+ .. + ++.+++.++-|+ |||+|-|+=-.|-.
T Consensus 147 ~~~~~~svf~y~dt~s~R~~i~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR 197 (393)
T PRK06153 147 EDAEEDSVFNYPDTASSRAGIGALSAKLEGQRIAIIGLGGTGSYILDLVAK 197 (393)
T ss_pred CCcccCCceehhhhhccccChHHHHHHHhhCcEEEEcCCccHHHHHHHHHH
Confidence 344566777777665 33 3 555555565444 58999998777643
No 117
>KOG2619|consensus
Probab=26.01 E-value=91 Score=26.03 Aligned_cols=52 Identities=19% Similarity=0.117 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCceEEEccChhHHHHHHcccCCCCC---chhhhcCHHHHHHHHHhc--ChHHHh
Q psy15752 35 NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNK---TNINEQGEFTLYDMDKIR--NLEHGR 93 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p~~---~~~~~~g~~~l~~~L~~~--DP~~a~ 93 (110)
+++=..+..|-+||+.|+. +++-++ |+. ..++-...++|-+.|+++ ||....
T Consensus 268 EKfw~al~~gsVPVvlg~~--n~e~fv-----P~~SfI~vdDF~s~~ela~ylk~L~~n~~~Y~ 324 (372)
T KOG2619|consen 268 EKFWNALDAGSVPVVLGPP--NYENFV-----PPDSFIHVDDFQSPQELAAYLKKLDKNPAAYL 324 (372)
T ss_pred HHHHhhhhcCcccEEECCc--cccccC-----CCcceEehhhcCCHHHHHHHHHHhhcCHHHHH
Confidence 3444566789999999992 222222 432 234566778888888888 455444
No 118
>PRK14567 triosephosphate isomerase; Provisional
Probab=25.97 E-value=1.2e+02 Score=23.88 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=17.7
Q ss_pred HHHHHHH-HHHHHHHh------cCCceEEEccCh
Q psy15752 28 QSYSGRI-NKIDDILQ------RNKVPIIVGGTN 54 (110)
Q Consensus 28 ~~f~~~a-~~i~~i~~------~gk~PIlVGGTg 54 (110)
.+..+++ ..|++.++ ..+++|+.|||-
T Consensus 178 ~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV 211 (253)
T PRK14567 178 LEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSL 211 (253)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccceEEEcCcC
Confidence 3444555 66666553 246899999993
No 119
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=25.97 E-value=68 Score=22.91 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=31.5
Q ss_pred cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEE
Q psy15752 5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIV 50 (110)
Q Consensus 5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlV 50 (110)
+.|.|.++|+ ...-+-....|.... +.|.+-++|||+=|-|
T Consensus 24 kSvN~R~Ldi-----~~rlP~~l~~lE~~ir~~i~~~l~RGkV~v~i 65 (159)
T PF03755_consen 24 KSVNHRFLDI-----SIRLPRELSSLEPEIRKLIRKKLSRGKVEVSI 65 (159)
T ss_pred EecccCceee-----EEeCCHHHHHHHHHHHHHHHHhcccceEEEEE
Confidence 3567888887 455566666777778 9999999999987665
No 120
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=25.95 E-value=1.2e+02 Score=24.99 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=13.7
Q ss_pred HHHHHHHhcC-CceEEE-ccChh
Q psy15752 35 NKIDDILQRN-KVPIIV-GGTNY 55 (110)
Q Consensus 35 ~~i~~i~~~g-k~PIlV-GGTgl 55 (110)
+.+++|.++= .+|++- ||||.
T Consensus 215 drL~eI~~~v~~vPLVLHGgSG~ 237 (347)
T PRK09196 215 DRIKEIHARLPNTHLVMHGSSSV 237 (347)
T ss_pred HHHHHHHhcCCCCCEEEeCCCCC
Confidence 4555665553 477555 99998
No 121
>PRK14823 putative deoxyribonucleoside-triphosphatase; Provisional
Probab=24.86 E-value=41 Score=25.11 Aligned_cols=61 Identities=13% Similarity=0.029 Sum_probs=39.4
Q ss_pred CHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccCCCCC-c-----hhhhcCHHHHHHHHHhc
Q psy15752 26 TLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNK-T-----NINEQGEFTLYDMDKIR 87 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p~~-~-----~~~~~g~~~l~~~L~~~ 87 (110)
+-..|.+-| .+...+.+.=+.|+|+=-|||+++|| +|.+-+-. . .....+.+.|.++|+.+
T Consensus 41 ~~~tf~enA~~KA~~~~~~~~~pvlaDDSGL~v~aL-~G~PGvysar~~g~~~~~~~~~~~ll~~l~~~ 108 (191)
T PRK14823 41 TADTLEGNALLKAEYVYKKYGYDCFADDTGLEVEAL-NGAPGVYSARYAGGEHNAEANMRKLLEELEGK 108 (191)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEecCEEEEecc-CCCcchHHHHHhCcCCCHHHHHHHHHHHccCC
Confidence 334788888 77776666656799999999999998 46432211 1 11223346677776654
No 122
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=24.85 E-value=1.6e+02 Score=21.84 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 30 YSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 30 f~~~a~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
+.+.++.|..++..|..+|||=|.|-+++.++.-+
T Consensus 15 ~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~ 49 (231)
T TIGR00761 15 LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEAL 49 (231)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHc
Confidence 33334667777788877899988888888887554
No 123
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=24.83 E-value=39 Score=21.41 Aligned_cols=8 Identities=50% Similarity=0.929 Sum_probs=6.6
Q ss_pred EEEccChh
Q psy15752 48 IIVGGTNY 55 (110)
Q Consensus 48 IlVGGTgl 55 (110)
+|.||||.
T Consensus 1 lIagGtGI 8 (109)
T PF00175_consen 1 LIAGGTGI 8 (109)
T ss_dssp EEEEGGGG
T ss_pred CeecceeH
Confidence 57899996
No 124
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=24.55 E-value=1.5e+02 Score=22.27 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=22.2
Q ss_pred HHHHH-HHHHHHHhcCCceEE-EccChhHHHHHHc
Q psy15752 30 YSGRI-NKIDDILQRNKVPII-VGGTNYYIESLLW 62 (110)
Q Consensus 30 f~~~a-~~i~~i~~~gk~PIl-VGGTglY~~all~ 62 (110)
+.+.. +.|..+.++|..||+ +||-|-..+.++.
T Consensus 16 ~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~ 50 (239)
T cd04261 16 RIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIE 50 (239)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHH
Confidence 33444 778887777765555 6876777777764
No 125
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=24.48 E-value=1.9e+02 Score=23.45 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=25.1
Q ss_pred HHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 27 LQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 27 v~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
...|.+.+ +.+.+. .+--+||++|.|++-+.+.+.+
T Consensus 179 ~~~Ff~~v~~~l~~~--~~v~~iIiaGPGf~k~~f~~~l 215 (351)
T TIGR00111 179 RKEFYKEIAKKLLNF--DDLKTIIVAGPGFYKNDFYDFI 215 (351)
T ss_pred HHHHHHHHHHHHhhh--cccCEEEEECCHHHHHHHHHHH
Confidence 34577766 665443 2446899999999888887654
No 126
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=24.25 E-value=1.7e+02 Score=23.43 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHH-------HHHHHHHHHhcCCceEEEccCh----hHHHHHHcc
Q psy15752 21 CWEKETLQSYSG-------RINKIDDILQRNKVPIIVGGTN----YYIESLLWT 63 (110)
Q Consensus 21 ~~e~ysv~~f~~-------~a~~i~~i~~~gk~PIlVGGTg----lY~~all~g 63 (110)
....+|..++.. .++.+..+...++.-+++|+|| -++++|+..
T Consensus 118 ~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 118 AVAIFTLDQYVERGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred CCCCCCHHHHHhcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHh
Confidence 345677777743 2266777777788889999887 467788754
No 127
>KOG3985|consensus
Probab=24.23 E-value=28 Score=27.72 Aligned_cols=16 Identities=31% Similarity=0.545 Sum_probs=11.8
Q ss_pred EEccChhHHHHHHccc
Q psy15752 49 IVGGTNYYIESLLWTI 64 (110)
Q Consensus 49 lVGGTglY~~all~g~ 64 (110)
+.||||||==-++.+.
T Consensus 14 IIGGsGl~dp~ile~~ 29 (283)
T KOG3985|consen 14 IIGGSGLYDPDILEDP 29 (283)
T ss_pred EeccCCCCCchhhhcc
Confidence 4589999966666653
No 128
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=24.18 E-value=59 Score=25.81 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCceEEEccCh
Q psy15752 35 NKIDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTg 54 (110)
+.+.+.+..+++||+.|+.|
T Consensus 165 ~~~~~~~~~~~v~Vv~Gf~g 184 (288)
T cd04245 165 QKIKKLRDSDEKLVIPGFYG 184 (288)
T ss_pred HHHHHHHhCCCEEEEeCccc
Confidence 66666677799999999875
No 129
>PRK14557 pyrH uridylate kinase; Provisional
Probab=24.18 E-value=70 Score=24.70 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=13.1
Q ss_pred HHHHHhcCCceEEEccCh
Q psy15752 37 IDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 37 i~~i~~~gk~PIlVGGTg 54 (110)
+...+++|.+||+.||+|
T Consensus 118 ~~~~l~~g~VvV~~G~~g 135 (247)
T PRK14557 118 AVHHLDNGYIVIFGGGNG 135 (247)
T ss_pred HHHHHhCCCEEEEECCcC
Confidence 344468899999999654
No 130
>PRK14824 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=24.14 E-value=52 Score=24.84 Aligned_cols=39 Identities=10% Similarity=0.114 Sum_probs=30.0
Q ss_pred CHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccC
Q psy15752 26 TLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTIL 65 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~ 65 (110)
+-..|..-| .+...+.+.=+.|+|+=-||||++|| .|++
T Consensus 39 ~~~tf~eNA~~KA~~~~~~~~~pviaDDSGL~vdAL-~G~P 78 (201)
T PRK14824 39 DGETFLENAYLKARAYAEFYKIPVLADDSGLEVPAL-EGYP 78 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEeccEEEeccc-CCCC
Confidence 334788888 77776666556799999999999998 5653
No 131
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=24.01 E-value=82 Score=22.84 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCceEEEccChh
Q psy15752 35 NKIDDILQRNKVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTgl 55 (110)
+.+++..++-.+-|.+||+|.
T Consensus 50 ~~l~~~~~~~dlVIttGG~G~ 70 (170)
T cd00885 50 EALRRASERADLVITTGGLGP 70 (170)
T ss_pred HHHHHHHhCCCEEEECCCCCC
Confidence 555666667778899999963
No 132
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=23.74 E-value=70 Score=26.15 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=17.5
Q ss_pred HHHHHHHhcCCceEEEccCh
Q psy15752 35 NKIDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTg 54 (110)
+.|+.+.++|.++|.+||-|
T Consensus 175 ~~Ik~L~~~g~vVI~~GGGG 194 (312)
T COG0549 175 EAIKALLESGHVVIAAGGGG 194 (312)
T ss_pred HHHHHHHhCCCEEEEeCCCC
Confidence 67888899999999999865
No 133
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=23.71 E-value=1e+02 Score=22.36 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=18.9
Q ss_pred HHHHHHHH-HHHHHHHhcCCceE--EEccC
Q psy15752 27 LQSYSGRI-NKIDDILQRNKVPI--IVGGT 53 (110)
Q Consensus 27 v~~f~~~a-~~i~~i~~~gk~PI--lVGGT 53 (110)
.+.+..++ ..++.+.++|.-.| +|||-
T Consensus 73 ~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 73 DGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred cchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 35677778 88888888876544 45653
No 134
>PRK05421 hypothetical protein; Provisional
Probab=23.63 E-value=1.6e+02 Score=22.37 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEcc
Q psy15752 25 ETLQSYSGRINKIDDILQRNKVPIIVGG 52 (110)
Q Consensus 25 ysv~~f~~~a~~i~~i~~~gk~PIlVGG 52 (110)
.+...+..+++.|.+..+....|+|++|
T Consensus 162 ~~~~~r~~q~~~l~~~~~~~~~p~Il~G 189 (263)
T PRK05421 162 LGVDVYSKQLEPIGDQIAHHSGPVILAG 189 (263)
T ss_pred cChHHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 3456677777444444455556777766
No 135
>PHA01806 hypothetical protein
Probab=23.60 E-value=92 Score=23.94 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=37.0
Q ss_pred CCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 19 LDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 19 ~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
+.+..+.|-......| ..+..+.+.|.-.-+|||. ++=++-|.
T Consensus 9 l~~~~~I~~~~is~~al~v~~~l~~~g~~aYlVGG~---VRD~Llgr 52 (200)
T PHA01806 9 LEGTKEIPEGLIAKALLLRLYSDARHSEGVALAGGA---ARDLMHGA 52 (200)
T ss_pred hcCccccChhHcCHHHHHHHHHHHHCCcEEEEECch---HHHHHcCC
Confidence 6788899999999999 9999999999999999995 66666664
No 136
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=23.55 E-value=85 Score=24.76 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=22.0
Q ss_pred CCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccCh
Q psy15752 19 LDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 19 ~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTg 54 (110)
+||... ..+ ++++.+...|-=-|+||||-
T Consensus 22 iDP~k~-------~~~~ei~~~~~~~GTDaImIGGS~ 51 (240)
T COG1646 22 IDPDKT-------EEADEIAEAAAEAGTDAIMIGGSD 51 (240)
T ss_pred eCcccc-------cccHHHHHHHHHcCCCEEEECCcc
Confidence 588876 345 66677777888899999984
No 137
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=23.48 E-value=1.7e+02 Score=24.38 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=24.2
Q ss_pred HHHHHHHH-HHHHHHHhc----CCceEEEccChhHHHHHHcc
Q psy15752 27 LQSYSGRI-NKIDDILQR----NKVPIIVGGTNYYIESLLWT 63 (110)
Q Consensus 27 v~~f~~~a-~~i~~i~~~----gk~PIlVGGTglY~~all~g 63 (110)
...|.+.+ +.+.+++.+ +--.||+||.|+.-+.+.++
T Consensus 186 ~~~f~~~Vae~~~~~f~~~~~~~v~~lILaGpg~~K~~f~~~ 227 (403)
T TIGR03676 186 AHEFYKRVGEAANEAFLPLKDKKLKGILIGGPGPTKEEFAEG 227 (403)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccEEEEeCCHHHHHHHhhh
Confidence 33444554 555554432 24689999999999888873
No 138
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=23.39 E-value=70 Score=19.51 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=11.8
Q ss_pred HHHhc-CCceEEEccCh
Q psy15752 39 DILQR-NKVPIIVGGTN 54 (110)
Q Consensus 39 ~i~~~-gk~PIlVGGTg 54 (110)
..... |++|+++.|.|
T Consensus 45 ~~~p~~g~vP~l~~~~~ 61 (76)
T PF02798_consen 45 AINPMFGKVPALEDGDG 61 (76)
T ss_dssp HHTTTSSSSSEEEETTT
T ss_pred hcccccceeeEEEECCC
Confidence 34456 99999998843
No 139
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=23.30 E-value=1.1e+02 Score=20.84 Aligned_cols=31 Identities=19% Similarity=0.424 Sum_probs=23.5
Q ss_pred H-HHHHHHHhcC-CceEEEccChhHHHHHHccc
Q psy15752 34 I-NKIDDILQRN-KVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 34 a-~~i~~i~~~g-k~PIlVGGTglY~~all~g~ 64 (110)
+ +.++.+.++| ++.|+.||...|++.++..+
T Consensus 78 ~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~ 110 (177)
T TIGR01488 78 ARELISWLKERGIDTVIVSGGFDFFVEPVAEKL 110 (177)
T ss_pred HHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 5 6777777776 46677799999999998654
No 140
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=23.19 E-value=1.1e+02 Score=22.30 Aligned_cols=30 Identities=17% Similarity=0.410 Sum_probs=22.9
Q ss_pred HHHHHHHhcCC-ceEEEccChhHHHHHHccc
Q psy15752 35 NKIDDILQRNK-VPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 35 ~~i~~i~~~gk-~PIlVGGTglY~~all~g~ 64 (110)
+.++.+.++|. +-|+.||...|++.++..+
T Consensus 81 e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 81 EFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred HHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 66777766664 4566799999999999775
No 141
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=23.18 E-value=44 Score=20.41 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=12.8
Q ss_pred HHHHHhcCCceEEE-ccCh
Q psy15752 37 IDDILQRNKVPIIV-GGTN 54 (110)
Q Consensus 37 i~~i~~~gk~PIlV-GGTg 54 (110)
+.++.-.|++|+++ ||+.
T Consensus 43 ~~~inP~g~vP~L~~~g~~ 61 (73)
T cd03052 43 FMRLNPTGEVPVLIHGDNI 61 (73)
T ss_pred HHHhCcCCCCCEEEECCEE
Confidence 44566789999998 4543
No 142
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=23.12 E-value=1.1e+02 Score=21.80 Aligned_cols=32 Identities=16% Similarity=0.374 Sum_probs=22.6
Q ss_pred CCCHHHHHHHH-HHHHHHHhcCCceEEEccChh
Q psy15752 24 KETLQSYSGRI-NKIDDILQRNKVPIIVGGTNY 55 (110)
Q Consensus 24 ~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTgl 55 (110)
.+....|.... +.++++..++..+|.+||.-.
T Consensus 53 ~~g~~~fr~~e~~~l~~l~~~~~~vi~~ggg~v 85 (172)
T PRK05057 53 VEGEEGFRDREEKVINELTEKQGIVLATGGGSV 85 (172)
T ss_pred HhCHHHHHHHHHHHHHHHHhCCCEEEEcCCchh
Confidence 44556666666 888888777777787887644
No 143
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=23.05 E-value=1.2e+02 Score=23.63 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=13.3
Q ss_pred HHHHHHHh------cCCceEEEccC
Q psy15752 35 NKIDDILQ------RNKVPIIVGGT 53 (110)
Q Consensus 35 ~~i~~i~~------~gk~PIlVGGT 53 (110)
+.|++.++ ...++||.|||
T Consensus 187 ~~Ir~~l~~~~~~~~~~~~IlYGGS 211 (250)
T PRK00042 187 AFIRAVLAELYGEVAEKVRILYGGS 211 (250)
T ss_pred HHHHHHHHHhcccccCCceEEEcCC
Confidence 55555544 34689999998
No 144
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=22.85 E-value=1.1e+02 Score=22.83 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=19.6
Q ss_pred CHHHHHHHH-HHHHHHHhc-CCceEEEcc
Q psy15752 26 TLQSYSGRI-NKIDDILQR-NKVPIIVGG 52 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~-gk~PIlVGG 52 (110)
.+..-.... +.++.++++ |.+||+.|.
T Consensus 93 ~~~~~~~~~~~~l~~~l~~~~~vpVv~g~ 121 (227)
T cd04234 93 GAARIIEISYERLKELLAEIGKVPVVTGF 121 (227)
T ss_pred chhhHHHHHHHHHHHHHhhCCCEEEecCc
Confidence 444444444 888888999 999999663
No 145
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=22.84 E-value=1e+02 Score=25.61 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=21.7
Q ss_pred cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEE
Q psy15752 5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIV 50 (110)
Q Consensus 5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlV 50 (110)
-+||||.+|+ ...|.+.+ .-..+-..+|++|.=|
T Consensus 62 LGIp~~~vdf------------~~~y~~~V~~~f~~~Y~~G~TPNPc 96 (356)
T COG0482 62 LGIPLYVVDF------------EKEFWNKVFEYFLAEYKAGKTPNPC 96 (356)
T ss_pred hCCceEEEch------------HHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 3789999988 34566555 4445555677776433
No 146
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only]
Probab=22.83 E-value=64 Score=27.40 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=15.9
Q ss_pred EEccChhHHHHHHcccCC
Q psy15752 49 IVGGTNYYIESLLWTILL 66 (110)
Q Consensus 49 lVGGTglY~~all~g~~~ 66 (110)
++||-|+-+.++..|+.+
T Consensus 26 ~~GGlGv~il~f~f~~~P 43 (436)
T COG2704 26 VAGGLGVLILVFIFGLKP 43 (436)
T ss_pred ecccccHHHHhhhhcCCC
Confidence 679999999999999754
No 147
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=22.74 E-value=1.7e+02 Score=23.85 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCceEEEccChh----HHHHHHccc
Q psy15752 35 NKIDDILQRNKVPIIVGGTNY----YIESLLWTI 64 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTgl----Y~~all~g~ 64 (110)
+.+..+.+.++.-+++|+||. .++||+.-+
T Consensus 153 ~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 153 AFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HHHHHHHHcCCeEEEECCCCccHHHHHHHHHccc
Confidence 556667778888899998874 777877543
No 148
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=22.64 E-value=52 Score=25.12 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=14.3
Q ss_pred hcCCceEEEccChhHHHHHH
Q psy15752 42 QRNKVPIIVGGTNYYIESLL 61 (110)
Q Consensus 42 ~~gk~PIlVGGTglY~~all 61 (110)
.+||+.+|.||||+==.+++
T Consensus 3 ~~~k~vlVtG~~G~IG~~l~ 22 (325)
T PLN02989 3 DGGKVVCVTGASGYIASWIV 22 (325)
T ss_pred CCCCEEEEECCchHHHHHHH
Confidence 35788999999998434433
No 149
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=22.57 E-value=32 Score=27.04 Aligned_cols=10 Identities=40% Similarity=0.723 Sum_probs=7.9
Q ss_pred EEEccChhHH
Q psy15752 48 IIVGGTNYYI 57 (110)
Q Consensus 48 IlVGGTglY~ 57 (110)
=|+||||+|-
T Consensus 11 giIgGSGl~~ 20 (267)
T PRK08564 11 GIIGGSGLYD 20 (267)
T ss_pred EEEecCCCCC
Confidence 3679999975
No 150
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=22.56 E-value=1.5e+02 Score=24.97 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=21.7
Q ss_pred HHHHHH-HHHHHHHhcC------CceEEEc-cChhHHHHHH
Q psy15752 29 SYSGRI-NKIDDILQRN------KVPIIVG-GTNYYIESLL 61 (110)
Q Consensus 29 ~f~~~a-~~i~~i~~~g------k~PIlVG-GTglY~~all 61 (110)
.|.+.. +++.+...++ ++.++|| |||.-....+
T Consensus 165 ~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al 205 (448)
T PF05185_consen 165 QYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFAL 205 (448)
T ss_dssp HHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHH
Confidence 344444 7777777764 5666776 9998876655
No 151
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=22.55 E-value=1e+02 Score=20.91 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=14.2
Q ss_pred HHHHHHHhcCCceEEEccCh
Q psy15752 35 NKIDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTg 54 (110)
+.+++..++-.+-|..||||
T Consensus 49 ~~l~~~~~~~dliittGG~g 68 (135)
T smart00852 49 EALREALERADLVITTGGTG 68 (135)
T ss_pred HHHHHHHhCCCEEEEcCCCC
Confidence 45555555667888889996
No 152
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=22.12 E-value=35 Score=27.12 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=8.9
Q ss_pred EEEccChhHHHH
Q psy15752 48 IIVGGTNYYIES 59 (110)
Q Consensus 48 IlVGGTglY~~a 59 (110)
=|.||||+|-=+
T Consensus 20 giIgGSGl~~l~ 31 (262)
T COG0005 20 GIIGGSGLYDLA 31 (262)
T ss_pred EEEecccccccc
Confidence 367999999533
No 153
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=22.11 E-value=53 Score=24.85 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=10.9
Q ss_pred cCCceEEEccChhH
Q psy15752 43 RNKVPIIVGGTNYY 56 (110)
Q Consensus 43 ~gk~PIlVGGTglY 56 (110)
+|+.-+|.||||+=
T Consensus 3 ~~~~ilVtGatGfI 16 (322)
T PLN02662 3 EGKVVCVTGASGYI 16 (322)
T ss_pred CCCEEEEECChHHH
Confidence 46777888999875
No 154
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=22.05 E-value=93 Score=22.23 Aligned_cols=26 Identities=19% Similarity=0.465 Sum_probs=16.4
Q ss_pred HHHHHH-HHHHHHHhcCCceEEEccChhHH
Q psy15752 29 SYSGRI-NKIDDILQRNKVPIIVGGTNYYI 57 (110)
Q Consensus 29 ~f~~~a-~~i~~i~~~gk~PIlVGGTglY~ 57 (110)
.|.+.| .....+ .|++||+.|+ +.|-
T Consensus 3 ~~~n~Ak~LA~~L--~~~~Pvi~~~-~~~~ 29 (155)
T PF10432_consen 3 SFVNPAKRLALEL--AGRIPVIYGS-PLYA 29 (155)
T ss_dssp -GHHHHHHHHHHH--TTSEEEEEEC-GCGC
T ss_pred cccCHHHHHHHHH--cCCCcEEEEC-ccch
Confidence 355667 444444 3699999999 6553
No 155
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=21.86 E-value=2.1e+02 Score=20.93 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 30 YSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 30 f~~~a~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
+.+.++.|..+.+.|..+|||=|.|-+.+.++.-.
T Consensus 19 ~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~ 53 (242)
T PF00696_consen 19 LRELADDIALLSQLGIKVVVVHGGGSFTDELLEKY 53 (242)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhc
Confidence 44444777777788888899988889999998665
No 156
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=21.77 E-value=3.9e+02 Score=20.77 Aligned_cols=52 Identities=15% Similarity=-0.008 Sum_probs=34.2
Q ss_pred ceEEEccChhHHHHHHccc-CCCCC-c---hhhhcCHHHHHHHHHhcChHHHhcccC
Q psy15752 46 VPIIVGGTNYYIESLLWTI-LLDNK-T---NINEQGEFTLYDMDKIRNLEHGRDVLE 97 (110)
Q Consensus 46 ~PIlVGGTglY~~all~g~-~~p~~-~---~~~~~g~~~l~~~L~~~DP~~a~~I~~ 97 (110)
.-|.+|||--.+-++..+. ..|.. . ....+..+.++++|...+.+.-.++..
T Consensus 199 ~lig~gGt~~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~r~~~~g 255 (300)
T TIGR03706 199 PLYGVGGTWRALARIHQAQHGYPLHGLHGYTITAEGLLELLEELIKLSREERLKLPG 255 (300)
T ss_pred EEEEehHHHHHHHHHHHhcccCCCcCccCCEECHHHHHHHHHHHHcCCHHHHHhCCC
Confidence 3455699988888888775 33321 1 123455677888888888887776654
No 157
>PRK04011 peptide chain release factor 1; Provisional
Probab=21.69 E-value=2e+02 Score=23.96 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=24.6
Q ss_pred HHHHHHHH-HHHHHHHh----cCCceEEEccChhHHHHHHc
Q psy15752 27 LQSYSGRI-NKIDDILQ----RNKVPIIVGGTNYYIESLLW 62 (110)
Q Consensus 27 v~~f~~~a-~~i~~i~~----~gk~PIlVGGTglY~~all~ 62 (110)
+..|.+.+ +.+.+++. .+--.||+||.|+.-+.+.+
T Consensus 194 ~~~f~k~Vae~~~~~f~~~~~~~v~~IvlaGpg~~K~~f~~ 234 (411)
T PRK04011 194 AHEFYKRVGEKANEAFLPLLEGKLKGILIGGPGPTKEEFLE 234 (411)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccEEEEECChhHHHHHhh
Confidence 34455555 56655543 24457999999999888887
No 158
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=21.54 E-value=77 Score=21.76 Aligned_cols=25 Identities=0% Similarity=0.005 Sum_probs=20.9
Q ss_pred HHH-HHHHHHHhcCCceEEEccChhH
Q psy15752 32 GRI-NKIDDILQRNKVPIIVGGTNYY 56 (110)
Q Consensus 32 ~~a-~~i~~i~~~gk~PIlVGGTglY 56 (110)
..| .+|+++.++|-+-.++++++..
T Consensus 74 SlAr~~Lr~L~~kG~Ik~V~k~~~~~ 99 (105)
T PF03297_consen 74 SLARKALRELESKGLIKPVSKHHRQR 99 (105)
T ss_dssp HHHHHHHHHHHHCCSSEEEECCTTCE
T ss_pred HHHHHHHHHHHHCCCEEEEeccCCeE
Confidence 357 9999999999998889887653
No 159
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.52 E-value=1.4e+02 Score=21.19 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=10.6
Q ss_pred HHHHhcC--CceEEEccCh
Q psy15752 38 DDILQRN--KVPIIVGGTN 54 (110)
Q Consensus 38 ~~i~~~g--k~PIlVGGTg 54 (110)
+.+.++| ..+|+|||+.
T Consensus 74 ~~l~~~gl~~~~vivGG~~ 92 (134)
T TIGR01501 74 QKCDEAGLEGILLYVGGNL 92 (134)
T ss_pred HHHHHCCCCCCEEEecCCc
Confidence 3343443 4689999973
No 160
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=21.51 E-value=78 Score=20.13 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcChHHHhcc
Q psy15752 77 EFTLYDMDKIRNLEHGRDV 95 (110)
Q Consensus 77 ~~~l~~~L~~~DP~~a~~I 95 (110)
.+.||.+...+.|+.|.||
T Consensus 21 Ge~Ly~~V~~~~p~~A~KI 39 (72)
T PF00658_consen 21 GERLYPLVQAIYPELAGKI 39 (72)
T ss_dssp HHHHHHHHHHHTHHHHHHH
T ss_pred hccccHHHHHhCcchhHHH
Confidence 4679999999999999987
No 161
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=21.45 E-value=1e+02 Score=21.39 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCceEEEccChh
Q psy15752 35 NKIDDILQRNKVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTgl 55 (110)
+.+++..++-.+-|..||||.
T Consensus 58 ~~l~~~~~~~DliIttGG~g~ 78 (144)
T TIGR00177 58 EILRKAVDEADVVLTTGGTGV 78 (144)
T ss_pred HHHHHHHhCCCEEEECCCCCC
Confidence 455555556778889999975
No 162
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=21.41 E-value=79 Score=24.23 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=18.0
Q ss_pred HHH-HHHHHHHhcCCceEEEccChhHH
Q psy15752 32 GRI-NKIDDILQRNKVPIIVGGTNYYI 57 (110)
Q Consensus 32 ~~a-~~i~~i~~~gk~PIlVGGTglY~ 57 (110)
.++ +.|.+.+.+|+ ||+|+.-.+|+
T Consensus 75 ~~~~~~l~~~l~~g~-pv~~~~D~~~l 100 (317)
T PF14399_consen 75 DEAWEELKEALDAGR-PVIVWVDMYYL 100 (317)
T ss_pred HHHHHHHHHHHhCCC-ceEEEeccccC
Confidence 345 77777778775 77777777776
No 163
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=21.02 E-value=84 Score=26.17 Aligned_cols=80 Identities=9% Similarity=0.175 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCceEEEccC-----hhHHH-HHHcccCCCCCc--hh----------hhcCHHHHHHHHHhc
Q psy15752 26 TLQSYSGRINKIDDILQRNKVPIIVGGT-----NYYIE-SLLWTILLDNKT--NI----------NEQGEFTLYDMDKIR 87 (110)
Q Consensus 26 sv~~f~~~a~~i~~i~~~gk~PIlVGGT-----glY~~-all~g~~~p~~~--~~----------~~~g~~~l~~~L~~~ 87 (110)
+..++.+..+.+++..+.|-. |++||. |+|+. +++.+. ++.+ .. .-.+.++..+.....
T Consensus 322 ~~~~~~~~~~~i~~a~~~Ga~-v~~gg~~~~~~g~~~~PTvl~~~--~~~~i~~eE~FGPvl~v~~~~~~~eai~~aN~~ 398 (474)
T cd07130 322 TKAAVDNYLAAIEEAKSQGGT-VLFGGKVIDGPGNYVEPTIVEGL--SDAPIVKEETFAPILYVLKFDTLEEAIAWNNEV 398 (474)
T ss_pred CHHHHHHHHHHHHHHHHCCCE-EEECCCcCCCCCeEEccEEEecC--CCCHHHhCCCcCCeEEEEEeCCHHHHHHHHhCC
Confidence 555554444777777777765 788986 55554 232221 1111 01 123455666666666
Q ss_pred ChHHHhcccCCChhhhhhhcc
Q psy15752 88 NLEHGRDVLEQQRMQVTKWTE 108 (110)
Q Consensus 88 DP~~a~~I~~nD~~Ri~r~~~ 108 (110)
.--.+.-|..+|..|+.|+.+
T Consensus 399 ~~gL~a~v~t~d~~~a~~~~~ 419 (474)
T cd07130 399 PQGLSSSIFTTDLRNAFRWLG 419 (474)
T ss_pred CCCceEEEEcCCHHHHHHHHh
Confidence 655677889999999888754
No 164
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=20.93 E-value=2.6e+02 Score=22.00 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHH-----HHHHHHHhc-CCceEE--EccChhHHHHHHc
Q psy15752 22 WEKETLQSYSGRI-----NKIDDILQR-NKVPII--VGGTNYYIESLLW 62 (110)
Q Consensus 22 ~e~ysv~~f~~~a-----~~i~~i~~~-gk~PIl--VGGTglY~~all~ 62 (110)
..-.|...|.+-+ ++++.+.+. |..||+ ||||.-++..+.+
T Consensus 204 ~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~cg~~~~~~~~~~~ 252 (338)
T TIGR01464 204 AGALSPEDFEEFVLPYLKKIIEEVKARLPNVPVILFAKGAGHLLEELAE 252 (338)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHh
Confidence 4568888888654 444555544 466676 8999988777764
No 165
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=20.92 E-value=1.9e+02 Score=21.57 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=22.3
Q ss_pred HHHHH-HHHHHHHhcCCceEE-EccChhHHHHHHcc
Q psy15752 30 YSGRI-NKIDDILQRNKVPII-VGGTNYYIESLLWT 63 (110)
Q Consensus 30 f~~~a-~~i~~i~~~gk~PIl-VGGTglY~~all~g 63 (110)
..+.. +.|..+.+.|..||+ +||-|-..+.++.-
T Consensus 16 ~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~ 51 (239)
T cd04246 16 RIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGL 51 (239)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHH
Confidence 33444 777777777766655 68777777777754
No 166
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=20.89 E-value=2.1e+02 Score=19.37 Aligned_cols=36 Identities=17% Similarity=0.360 Sum_probs=24.2
Q ss_pred HHHHHHH-HHHHHHHhcCCceE----EEc---cChhHHHHHHcc
Q psy15752 28 QSYSGRI-NKIDDILQRNKVPI----IVG---GTNYYIESLLWT 63 (110)
Q Consensus 28 ~~f~~~a-~~i~~i~~~gk~PI----lVG---GTglY~~all~g 63 (110)
....... +.++.+.++|..|- +|| +|..|+++...-
T Consensus 10 ~~i~~~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~ 53 (117)
T PF00763_consen 10 KEIKEELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKA 53 (117)
T ss_dssp HHHHHHHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHH
Confidence 4455666 88888888877774 445 788999988754
No 167
>PRK14825 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=20.85 E-value=56 Score=24.59 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=28.2
Q ss_pred HHHHHHH-HHHHHHHhc-C-CceEEEccChhHHHHHHcccC
Q psy15752 28 QSYSGRI-NKIDDILQR-N-KVPIIVGGTNYYIESLLWTIL 65 (110)
Q Consensus 28 ~~f~~~a-~~i~~i~~~-g-k~PIlVGGTglY~~all~g~~ 65 (110)
..|..-| .+.+.+.+. + +.|+|+=-|||++.|| .|.+
T Consensus 41 ~tf~enA~~KA~~~~~~~~~~~pvlaDDSGL~vdAL-~G~P 80 (199)
T PRK14825 41 KTFKENSLLKAKALFEILNNKQPVFSEDSGLCIEAL-NLEP 80 (199)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCcEEEecCeEEEhhh-CCCC
Confidence 4788888 666666553 3 4799999999999998 5653
No 168
>PF14160 FAM110_C: Centrosome-associated C terminus
Probab=20.81 E-value=39 Score=23.55 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=14.4
Q ss_pred HHhcChHHHhcccCCChhhhhhhc
Q psy15752 84 DKIRNLEHGRDVLEQQRMQVTKWT 107 (110)
Q Consensus 84 L~~~DP~~a~~I~~nD~~Ri~r~~ 107 (110)
+.+.=|+.-+-|..| -||||||
T Consensus 83 ~~~r~p~~~SIIERN--ARIIKWL 104 (111)
T PF14160_consen 83 LAERVPYGVSIIERN--ARIIKWL 104 (111)
T ss_pred ccccCCCCCceeeeh--hHHHHHH
Confidence 444446666667664 3899997
No 169
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=20.79 E-value=1.9e+02 Score=20.59 Aligned_cols=45 Identities=9% Similarity=-0.071 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHH-HHHHHHHhcCCceEEEc---cChhHHHHHHcccCCC
Q psy15752 23 EKETLQSYSGRI-NKIDDILQRNKVPIIVG---GTNYYIESLLWTILLD 67 (110)
Q Consensus 23 e~ysv~~f~~~a-~~i~~i~~~gk~PIlVG---GTglY~~all~g~~~p 67 (110)
.-+|-.++.+.+ +..+++.+.|+.+++|| |.-.+...|..-+.+|
T Consensus 8 ~~is~~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~~L~~~ 56 (156)
T PRK09177 8 FPVSWDQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILARELGIR 56 (156)
T ss_pred EEcCHHHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHHHcCCC
Confidence 347888999988 88888877776777776 3333444444444444
No 170
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=20.68 E-value=73 Score=24.80 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCceEEEccCh
Q psy15752 35 NKIDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTg 54 (110)
..+..+++.|.+||+.|+++
T Consensus 126 ~~l~~lL~~g~vPVi~g~~~ 145 (262)
T cd04255 126 LQLPTFLKAGRAPVISGMPP 145 (262)
T ss_pred HHHHHHHHCCCeEEEeCCcC
Confidence 45777889999999999954
No 171
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=20.66 E-value=57 Score=25.52 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=13.2
Q ss_pred cCCceEEEccChhHHHHHH
Q psy15752 43 RNKVPIIVGGTNYYIESLL 61 (110)
Q Consensus 43 ~gk~PIlVGGTglY~~all 61 (110)
+++.-+|.|||||==..|+
T Consensus 14 ~~~~vlVtGatGfiG~~lv 32 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLL 32 (348)
T ss_pred cCCEEEEECCccHHHHHHH
Confidence 4677889999998543333
No 172
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=20.61 E-value=81 Score=25.09 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=14.4
Q ss_pred HHHHHHHhcC-CceEEE-ccChhH
Q psy15752 35 NKIDDILQRN-KVPIIV-GGTNYY 56 (110)
Q Consensus 35 ~~i~~i~~~g-k~PIlV-GGTglY 56 (110)
+.+++|.+.- .+|++. ||||.=
T Consensus 191 e~L~~i~~~~~~iPlVlhGGSGi~ 214 (293)
T PRK07315 191 DHLEKLTEAVPGFPIVLHGGSGIP 214 (293)
T ss_pred HHHHHHHHhccCCCEEEECCCCCC
Confidence 5566666654 477766 998753
No 173
>PRK08841 aspartate kinase; Validated
Probab=20.47 E-value=77 Score=26.13 Aligned_cols=31 Identities=13% Similarity=0.256 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHH-HHHHHHHhcCCceEEEccC
Q psy15752 23 EKETLQSYSGRI-NKIDDILQRNKVPIIVGGT 53 (110)
Q Consensus 23 e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGT 53 (110)
+.|+-+...... +.+..+++.|.+||+.|..
T Consensus 106 ~~~~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~ 137 (392)
T PRK08841 106 NQHNDATIKHIDTSTITELLEQDQIVIVAGFQ 137 (392)
T ss_pred CCCCCceechhhHHHHHHHHhCCCEEEEeCCc
Confidence 345445554444 7788888999999998853
No 174
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=20.47 E-value=59 Score=25.32 Aligned_cols=13 Identities=23% Similarity=0.532 Sum_probs=11.0
Q ss_pred cCCceEEEccChh
Q psy15752 43 RNKVPIIVGGTNY 55 (110)
Q Consensus 43 ~gk~PIlVGGTgl 55 (110)
.|+..+|.||||+
T Consensus 3 ~~k~ilItGatG~ 15 (349)
T TIGR02622 3 QGKKVLVTGHTGF 15 (349)
T ss_pred CCCEEEEECCCCh
Confidence 4778899999997
No 175
>PF15637 Tox-HNH-HHH: HNH/Endo VII superfamily nuclease toxin with a HHH motif
Probab=20.45 E-value=72 Score=22.48 Aligned_cols=29 Identities=10% Similarity=0.041 Sum_probs=23.9
Q ss_pred CHHHHHHHHHhcChHHHhcccCCChhhhhhhc
Q psy15752 76 GEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWT 107 (110)
Q Consensus 76 g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~ 107 (110)
.....|++|.+.-|++ ++.+|+.||-++.
T Consensus 36 n~k~fw~~l~~~~pe~---~S~~N~~~I~~G~ 64 (116)
T PF15637_consen 36 NNKYFWDELLKLYPEM---LSKENRARIERGR 64 (116)
T ss_pred hHHHHHHHHHHhChhh---cCHhHHHHHHcCC
Confidence 3478999999999996 7889999997653
No 176
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=20.07 E-value=80 Score=24.04 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=15.6
Q ss_pred HHHH-HHHHHHHhcCCceEEEcc
Q psy15752 31 SGRI-NKIDDILQRNKVPIIVGG 52 (110)
Q Consensus 31 ~~~a-~~i~~i~~~gk~PIlVGG 52 (110)
.... +.++.+.+..++||+|||
T Consensus 172 ~~~~~~~i~~lr~~~~~pI~vgg 194 (242)
T cd04724 172 PDDLKELIKRIRKYTDLPIAVGF 194 (242)
T ss_pred ChhHHHHHHHHHhcCCCcEEEEc
Confidence 3444 666666666689999987
No 177
>KOG1673|consensus
Probab=20.07 E-value=64 Score=24.48 Aligned_cols=30 Identities=13% Similarity=0.366 Sum_probs=19.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCceEEEccC
Q psy15752 20 DCWEKETLQSYSGRINKIDDILQRNKVPIIVGGT 53 (110)
Q Consensus 20 d~~e~ysv~~f~~~a~~i~~i~~~gk~PIlVGGT 53 (110)
.+..-=|+..|.++|... .+--+||+||--
T Consensus 104 ~r~TLnSi~~WY~QAr~~----NktAiPilvGTK 133 (205)
T KOG1673|consen 104 RRSTLNSIKEWYRQARGL----NKTAIPILVGTK 133 (205)
T ss_pred chHHHHHHHHHHHHHhcc----CCccceEEeccc
Confidence 444455778888887332 345689999854
Done!