Query psy15752
Match_columns 110
No_of_seqs 123 out of 1094
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 20:28:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3exa_A TRNA delta(2)-isopenten 100.0 1.1E-33 3.7E-38 224.9 10.8 100 5-108 56-167 (322)
2 3foz_A TRNA delta(2)-isopenten 100.0 6.8E-34 2.3E-38 225.5 9.1 100 5-108 63-173 (316)
3 3eph_A TRNA isopentenyltransfe 100.0 1.8E-31 6.2E-36 217.6 7.0 100 5-108 55-165 (409)
4 3crm_A TRNA delta(2)-isopenten 100.0 6.1E-29 2.1E-33 197.1 5.9 100 5-108 58-168 (323)
5 3d3q_A TRNA delta(2)-isopenten 99.9 5E-24 1.7E-28 170.0 10.5 100 5-108 60-174 (340)
6 3a8t_A Adenylate isopentenyltr 99.7 1.3E-16 4.4E-21 127.3 7.1 57 4-64 92-150 (339)
7 2ze6_A Isopentenyl transferase 98.4 3.8E-07 1.3E-11 68.3 5.0 54 5-63 54-109 (253)
8 3pzl_A Agmatine ureohydrolase; 81.8 2.8 9.4E-05 32.4 5.6 41 24-64 93-134 (313)
9 1woh_A Agmatinase; alpha/beta 81.0 2.4 8.3E-05 32.2 5.1 41 24-64 90-131 (305)
10 3niq_A 3-guanidinopropionase; 80.1 2.9 9.8E-05 32.4 5.2 41 24-64 95-136 (326)
11 1gq6_A Proclavaminate amidino 79.1 2.8 9.5E-05 32.0 4.8 40 24-63 90-130 (313)
12 2a0m_A Arginase superfamily pr 78.9 2.6 8.8E-05 32.4 4.6 38 26-63 93-131 (316)
13 3nio_A Guanidinobutyrase; PA14 78.5 3.5 0.00012 31.7 5.2 39 24-62 98-137 (319)
14 2cev_A Protein (arginase); enz 77.6 2.9 0.0001 31.6 4.5 38 27-64 71-109 (299)
15 3lhl_A Putative agmatinase; pr 77.5 3.1 0.00011 31.5 4.7 40 25-64 68-108 (287)
16 4g3h_A Arginase (ROCF); rossma 77.5 2.5 8.5E-05 32.8 4.2 39 26-64 61-101 (330)
17 1pq3_A Arginase II, mitochondr 76.2 2.6 9.1E-05 31.9 3.9 38 27-64 69-107 (306)
18 4dz4_A Agmatinase; hydrolase; 76.0 2.4 8.1E-05 32.8 3.6 41 24-64 108-149 (324)
19 2aeb_A Arginase 1; hydrolase, 73.8 3.2 0.00011 31.7 3.9 38 26-63 72-110 (322)
20 3m1r_A Formimidoylglutamase; s 73.3 4.3 0.00015 31.2 4.5 41 24-64 97-140 (322)
21 3sl1_A Arginase; metallohydrol 72.6 4.3 0.00015 32.9 4.5 40 24-63 164-204 (413)
22 2we5_A Carbamate kinase 1; arg 62.2 2.8 9.5E-05 31.9 1.3 20 35-54 173-192 (310)
23 2ef5_A Arginase; TTHA1496, str 62.2 5 0.00017 30.1 2.8 37 27-64 69-106 (290)
24 2qmh_A HPR kinase/phosphorylas 61.1 0.1 3.5E-06 38.8 -6.7 25 6-34 84-112 (205)
25 1xfk_A Formimidoylglutamase; f 59.0 13 0.00046 28.5 4.8 39 24-63 97-136 (336)
26 2l5q_A Uncharacterized protein 58.2 3.2 0.00011 29.2 1.0 35 74-108 84-119 (142)
27 3kzf_A Carbamate kinase; argin 58.0 3.6 0.00012 32.2 1.3 21 35-55 179-199 (317)
28 1hji_B NUN-protein; bacterioph 56.0 2.5 8.7E-05 21.1 0.1 12 96-107 5-16 (26)
29 1e19_A Carbamate kinase-like c 54.5 4.2 0.00015 31.0 1.2 21 35-55 177-197 (314)
30 2e9y_A Carbamate kinase; trans 51.9 5.7 0.00019 30.3 1.5 19 35-53 177-195 (316)
31 2yxb_A Coenzyme B12-dependent 50.8 14 0.00046 25.4 3.3 24 31-54 83-109 (161)
32 1y80_A Predicted cobalamin bin 48.3 14 0.00049 25.9 3.1 21 35-55 158-181 (210)
33 3ezx_A MMCP 1, monomethylamine 45.9 13 0.00043 26.9 2.5 21 35-55 164-187 (215)
34 3jug_A Beta-mannanase; TIM-bar 45.8 31 0.0011 26.6 4.9 34 21-54 148-183 (345)
35 1ccw_A Protein (glutamate muta 44.1 8.2 0.00028 25.8 1.2 23 32-54 69-94 (137)
36 3fuc_A Purine nucleoside phosp 43.2 25 0.00086 26.7 4.0 33 24-56 4-36 (284)
37 3ek6_A Uridylate kinase; UMPK 42.6 15 0.0005 26.9 2.5 20 35-54 120-139 (243)
38 1ivn_A Thioesterase I; hydrola 41.6 52 0.0018 21.6 5.1 32 20-51 74-106 (190)
39 4a7w_A Uridylate kinase; trans 39.9 17 0.00059 26.5 2.5 20 35-54 119-138 (240)
40 3kts_A Glycerol uptake operon 38.6 12 0.00042 27.1 1.5 19 35-53 140-158 (192)
41 4fbl_A LIPS lipolytic enzyme; 36.7 36 0.0012 24.0 3.8 31 23-53 97-128 (281)
42 3agk_A Peptide chain release f 36.6 39 0.0013 26.1 4.2 35 28-62 196-236 (373)
43 3phb_E Purine nucleoside phosp 36.0 27 0.00091 27.2 3.1 34 23-56 38-71 (324)
44 2vgn_A DOM34; translation term 36.0 41 0.0014 26.4 4.3 36 27-62 188-225 (386)
45 1b78_A Pyrophosphatase; struct 34.3 6.3 0.00022 28.6 -0.7 59 28-87 48-108 (193)
46 1h1n_A Endo type cellulase ENG 33.5 72 0.0025 23.3 5.1 30 26-55 138-170 (305)
47 3qr3_A Endoglucanase EG-II; TI 33.4 69 0.0024 24.5 5.1 29 26-54 154-185 (340)
48 1fr2_B Colicin E9; protein-pro 33.4 18 0.0006 25.1 1.5 29 78-107 55-83 (134)
49 2jb0_B Colicin E7; hydrolase/i 33.2 18 0.00061 25.0 1.5 29 78-107 52-80 (131)
50 2j4j_A Uridylate kinase; trans 32.9 85 0.0029 22.1 5.2 80 26-109 16-104 (226)
51 3mil_A Isoamyl acetate-hydroly 32.7 84 0.0029 21.0 5.0 30 22-51 90-120 (240)
52 2fcl_A Hypothetical protein TM 32.6 46 0.0016 23.1 3.7 52 32-86 19-74 (169)
53 3c4r_A Uncharacterized protein 31.9 7.9 0.00027 27.4 -0.5 13 98-110 55-67 (151)
54 2whl_A Beta-mannanase, baman5; 31.9 76 0.0026 22.9 4.9 35 20-54 124-160 (294)
55 1i2t_A HYD protein; four alpha 31.6 20 0.0007 21.4 1.4 19 77-95 6-24 (61)
56 1xky_A Dihydrodipicolinate syn 31.5 23 0.00079 26.7 2.1 8 44-51 80-87 (301)
57 1cz3_A Dihydrofolate reductase 31.4 52 0.0018 22.1 3.7 30 35-64 84-114 (168)
58 3c5v_A PME-1, protein phosphat 30.9 90 0.0031 22.1 5.2 32 22-53 85-118 (316)
59 3obw_A Protein pelota homolog; 30.2 48 0.0016 26.0 3.8 39 25-63 184-224 (364)
60 2i2x_B MTAC, methyltransferase 29.7 35 0.0012 25.0 2.8 21 35-55 193-214 (258)
61 3ruf_A WBGU; rossmann fold, UD 29.5 42 0.0014 24.4 3.2 23 39-61 20-42 (351)
62 1nmr_A Poly(A)-binding protein 29.0 29 0.00098 22.2 1.9 20 76-95 27-46 (85)
63 3la8_A SMU.1229, putative puri 28.7 56 0.0019 25.2 3.8 22 35-56 46-67 (303)
64 2jgq_A Triosephosphate isomera 28.3 43 0.0015 24.8 3.1 28 24-53 168-196 (233)
65 1qe5_A Pentosyltransferase; en 28.3 69 0.0024 23.9 4.2 22 35-56 19-41 (266)
66 3odg_A Xanthosine phosphorylas 28.0 44 0.0015 25.4 3.1 9 48-56 37-45 (287)
67 2gd9_A Hypothetical protein YY 27.8 76 0.0026 21.5 4.1 32 33-64 106-139 (189)
68 1g2o_A Purine nucleoside phosp 27.7 52 0.0018 24.6 3.5 22 35-56 17-39 (268)
69 3hp4_A GDSL-esterase; psychrot 27.5 83 0.0028 20.3 4.1 29 23-51 81-110 (185)
70 1tcv_A Purine-nucleoside phosp 27.2 69 0.0024 24.1 4.1 22 35-56 17-38 (287)
71 3dqz_A Alpha-hydroxynitrIle ly 26.9 51 0.0018 21.8 3.0 31 22-53 50-81 (258)
72 3p94_A GDSL-like lipase; serin 26.6 99 0.0034 20.1 4.4 28 24-51 93-121 (204)
73 3ix9_A Dihydrofolate reductase 26.2 55 0.0019 23.2 3.2 26 35-60 105-130 (190)
74 2p4h_X Vestitone reductase; NA 26.0 25 0.00084 25.2 1.3 18 44-61 1-18 (322)
75 3dkr_A Esterase D; alpha beta 25.8 80 0.0027 20.5 3.8 28 26-53 73-101 (251)
76 3acd_A Hypoxanthine-guanine ph 25.3 1.7E+02 0.0059 20.2 6.0 45 24-68 13-63 (181)
77 3mca_B Protein DOM34, elongati 24.7 75 0.0026 25.0 4.0 36 27-62 182-219 (390)
78 2ogx_B Molybdenum storage prot 24.6 34 0.0011 25.2 1.9 19 36-54 133-151 (270)
79 4h6b_A Allene oxide cyclase; B 24.6 22 0.00074 26.1 0.7 10 48-57 122-131 (195)
80 3j15_A Protein pelota; ribosom 24.5 61 0.0021 25.2 3.4 37 26-62 178-216 (357)
81 3glr_A NAD-dependent deacetyla 24.5 1.2E+02 0.0042 22.8 5.1 29 78-109 76-104 (285)
82 3ozb_A Methylthioadenosine pho 24.1 19 0.00065 26.9 0.4 8 49-56 20-27 (259)
83 3khs_A Purine nucleoside phosp 23.5 52 0.0018 24.9 2.7 9 48-56 25-33 (285)
84 3kbq_A Protein TA0487; structu 23.4 57 0.002 22.9 2.8 21 35-55 54-74 (172)
85 1y5e_A Molybdenum cofactor bio 23.3 68 0.0023 21.9 3.1 21 35-55 62-84 (169)
86 3hss_A Putative bromoperoxidas 23.2 1.4E+02 0.0048 20.0 4.8 31 21-53 87-118 (293)
87 3bul_A Methionine synthase; tr 23.0 58 0.002 27.3 3.1 21 35-55 168-189 (579)
88 2ij9_A Uridylate kinase; struc 22.7 45 0.0015 23.4 2.1 19 35-53 93-111 (219)
89 1yya_A Triosephosphate isomera 22.6 76 0.0026 23.7 3.5 19 35-53 187-212 (250)
90 3aof_A Endoglucanase; glycosyl 22.4 1.3E+02 0.0046 21.6 4.8 36 21-56 137-174 (317)
91 4b8w_A GDP-L-fucose synthase; 22.3 34 0.0012 24.0 1.4 21 43-63 5-25 (319)
92 1zdr_A Dihydrofolate reductase 22.3 76 0.0026 21.4 3.2 26 35-60 81-106 (164)
93 3gp3_A 2,3-bisphosphoglycerate 22.0 1.3E+02 0.0043 21.2 4.5 39 24-63 157-200 (257)
94 2pbq_A Molybdenum cofactor bio 21.9 75 0.0026 21.9 3.2 21 35-55 58-80 (178)
95 3e8x_A Putative NAD-dependent 21.8 34 0.0011 23.6 1.3 21 43-63 20-40 (236)
96 2is8_A Molybdopterin biosynthe 21.8 78 0.0027 21.4 3.2 21 35-55 52-74 (164)
97 3f81_A Dual specificity protei 21.7 99 0.0034 20.6 3.7 41 5-50 79-120 (183)
98 3geb_A EYES absent homolog 2; 21.4 2E+02 0.007 22.0 5.7 59 29-87 159-226 (274)
99 2dyd_A Poly(A)-binding protein 21.3 32 0.0011 21.9 1.0 20 76-95 26-45 (85)
100 1xrs_B D-lysine 5,6-aminomutas 21.3 84 0.0029 23.6 3.5 21 35-55 202-225 (262)
101 2kav_A Sodium channel protein 21.2 33 0.0011 23.3 1.1 58 51-108 13-73 (129)
102 3sxp_A ADP-L-glycero-D-mannohe 21.1 35 0.0012 25.1 1.4 20 43-62 9-32 (362)
103 3u1t_A DMMA haloalkane dehalog 21.1 1.3E+02 0.0046 20.0 4.3 31 21-53 73-104 (309)
104 3k6j_A Protein F01G10.3, confi 21.1 93 0.0032 25.1 3.9 20 43-62 222-242 (460)
105 1y1p_A ARII, aldehyde reductas 21.1 36 0.0012 24.4 1.4 21 43-63 10-30 (342)
106 2nzw_A Alpha1,3-fucosyltransfe 21.0 1E+02 0.0035 24.4 4.1 47 35-88 249-298 (371)
107 2btm_A TIM, protein (triosepho 21.0 86 0.0029 23.5 3.5 19 35-53 187-212 (252)
108 3emu_A Leucine rich repeat and 20.8 1.7E+02 0.0057 19.3 4.7 40 5-50 52-92 (161)
109 3agj_B Protein pelota homolog; 20.7 1.1E+02 0.0038 23.6 4.2 37 26-62 172-210 (358)
110 1viz_A PCRB protein homolog; s 20.6 64 0.0022 23.8 2.7 18 35-52 171-189 (240)
111 2z1m_A GDP-D-mannose dehydrata 20.5 37 0.0013 24.4 1.3 17 44-60 3-19 (345)
112 4id9_A Short-chain dehydrogena 20.5 35 0.0012 24.8 1.2 19 43-61 18-36 (347)
113 1gvn_B Zeta; postsegregational 20.4 1.1E+02 0.0038 22.4 4.0 40 23-62 5-55 (287)
114 3oby_A Protein pelota homolog; 20.3 1.2E+02 0.0041 23.6 4.3 32 28-62 170-202 (352)
115 4hfx_A Transcription elongatio 20.3 1.7E+02 0.0059 18.8 4.4 65 6-86 12-76 (97)
116 1mkz_A Molybdenum cofactor bio 20.3 88 0.003 21.4 3.2 21 35-55 59-81 (172)
No 1
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=100.00 E-value=1.1e-33 Score=224.89 Aligned_cols=100 Identities=20% Similarity=0.296 Sum_probs=92.0
Q ss_pred cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccCCCCC--c-h--------h
Q psy15752 5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNK--T-N--------I 72 (110)
Q Consensus 5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p~~--~-~--------~ 72 (110)
++|||||||+ ++|.+.||+++|+.+| +.|++++++|++||||||||||++||++|+.+|+. + . .
T Consensus 56 ~gvphhlid~----~~~~e~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~~~~~~~~~R~~l~~~~ 131 (322)
T 3exa_A 56 DGVPHHLIDI----KDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFV 131 (322)
T ss_dssp TTCCEESSSC----BCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHHHHHHH
T ss_pred cCCCEEEecc----CChhhhccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCCCCCCCHHHHHHHHHHH
Confidence 6899999999 7999999999999999 99999999999999999999999999999965432 2 1 1
Q ss_pred hhcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752 73 NEQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE 108 (110)
Q Consensus 73 ~~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~ 108 (110)
+..|.++||++|+++||++|++|||||++||+|+||
T Consensus 132 ~~~g~~~L~~~L~~~DP~~A~~i~pnd~~Ri~RALE 167 (322)
T 3exa_A 132 NSYGVQALHDKLSKIDPKAAAAIHPNNYRRVIRALE 167 (322)
T ss_dssp HHSCHHHHHHHHHTTCHHHHTTSCTTCHHHHHHHHH
T ss_pred HhcCHHHHHHHHHhhCHHHHhhcCcccHHHHHHHHH
Confidence 467999999999999999999999999999999997
No 2
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=100.00 E-value=6.8e-34 Score=225.52 Aligned_cols=100 Identities=19% Similarity=0.229 Sum_probs=92.8
Q ss_pred cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc-CCCCCchh---------h
Q psy15752 5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI-LLDNKTNI---------N 73 (110)
Q Consensus 5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~-~~p~~~~~---------~ 73 (110)
++|||||||+ ++|.+.||+++|+++| +.|++++++|++||||||||||++||++|+ .+|+.++. +
T Consensus 63 ~~v~hhlid~----~~~~e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGTglYi~all~gl~~~p~~~~~~R~~l~~~~~ 138 (316)
T 3foz_A 63 LAAPHRLLDI----RDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAA 138 (316)
T ss_dssp HHSCEETSSC----BCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHSCCCCCCCCCHHHHHHHHHHHH
T ss_pred cCCCEEEecc----CCccccccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcCCCCCCCHHHHHHHHHHHH
Confidence 5799999999 7999999999999999 999999999999999999999999999998 56754422 4
Q ss_pred hcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752 74 EQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE 108 (110)
Q Consensus 74 ~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~ 108 (110)
+.|.++||++|+++||++|++|||||++||+|+||
T Consensus 139 ~~g~~~l~~~L~~~DP~~A~ri~pnd~~Ri~RALE 173 (316)
T 3foz_A 139 EQGWESLHRQLQEVDPVAAARIHPNDPQRLSRALE 173 (316)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHSCTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhCHHHHhhCCCccHHHHHHHHH
Confidence 67999999999999999999999999999999997
No 3
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=99.97 E-value=1.8e-31 Score=217.56 Aligned_cols=100 Identities=22% Similarity=0.334 Sum_probs=90.3
Q ss_pred cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc-CCCC-Cch--------hh
Q psy15752 5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI-LLDN-KTN--------IN 73 (110)
Q Consensus 5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~-~~p~-~~~--------~~ 73 (110)
.+|||||||+ +++.+.||+++|.++| +.|++|+++|++||||||||||++||++|+ +.|+ .+. .+
T Consensus 55 ~gv~hhlid~----~~~~~~~s~~~F~~~a~~~i~~i~~~g~~pilVGGTglYi~aLl~gl~~~~~~~~~~~r~~~~~~~ 130 (409)
T 3eph_A 55 EGIPHHVMNH----VDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTRKQLDILE 130 (409)
T ss_dssp TTCCEESCSC----BCTTSCCCHHHHHHHHHHHHHHHHTTTCEEEEECSCGGGGGGGGTCSCCCSSSCCCCCHHHHHHHT
T ss_pred cCchhhcCCc----cChHhHhhHHHHHHHHHHHHHHHHhcCCCEEEECChHHHHHHHHccccCCCCccCHHHHHHHHHHh
Confidence 6899999999 7999999999999999 999999999999999999999999999997 3443 111 13
Q ss_pred hcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752 74 EQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE 108 (110)
Q Consensus 74 ~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~ 108 (110)
..|.++||++|+++||++|++|||||++||+|+||
T Consensus 131 ~~g~~~L~~~L~~~DP~~A~rihpnd~~Ri~RALE 165 (409)
T 3eph_A 131 STDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLE 165 (409)
T ss_dssp CSSSSSHHHHHHHSCHHHHTTSCTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCHHHHHhcCcccHHHHHHHHH
Confidence 45789999999999999999999999999999997
No 4
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=99.95 E-value=6.1e-29 Score=197.13 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=54.3
Q ss_pred cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc-CCCCCch---------hh
Q psy15752 5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI-LLDNKTN---------IN 73 (110)
Q Consensus 5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~-~~p~~~~---------~~ 73 (110)
+++||||+|+ ++|.+.|+++.|.+.+ +.|+++.++|+.||+|||||+|++||++|+ .+|..+. .+
T Consensus 58 ~gvph~lid~----~~~~~~~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~~y~~all~g~~~~p~~~~~~R~~l~~~~~ 133 (323)
T 3crm_A 58 ARYPHRLIDI----RDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQ 133 (323)
T ss_dssp HHSCEETSSC----BCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHCCC-------------------
T ss_pred cCCCEEEeec----cCcccccCHHHHHHHHHHHHHHHHHcCCeEEEECCchhhHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 5799999999 7999999999999999 999999999999999999999999999998 5665321 14
Q ss_pred hcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752 74 EQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE 108 (110)
Q Consensus 74 ~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~ 108 (110)
+.|.++||++|+++||++|++|||||++||+|+||
T Consensus 134 ~~g~~~l~~~L~~~Dp~~a~~i~~nd~~Ri~RALE 168 (323)
T 3crm_A 134 AEGWEALHRQLAEVDPESAARIHPNDPQRLMRALE 168 (323)
T ss_dssp -----------------------------------
T ss_pred HcCHHHHHHHHHHhCHHHHhhcCCCCHHHHHHHHH
Confidence 67899999999999999999999999999999998
No 5
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.90 E-value=5e-24 Score=170.01 Aligned_cols=100 Identities=28% Similarity=0.372 Sum_probs=90.8
Q ss_pred cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc-CCCC-Cchh---------
Q psy15752 5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI-LLDN-KTNI--------- 72 (110)
Q Consensus 5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~-~~p~-~~~~--------- 72 (110)
+++||||+|+ .++.+.|++++|.+.+ ..+.++.++|+.||+|||||+|++++++|+ .+|. .+.+
T Consensus 60 ~~v~hhl~di----~~~~~~~~~~dF~~~a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~~~~~~~d~~~~~Rlrrrl 135 (340)
T 3d3q_A 60 EGIPHYMIDI----LPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKL 135 (340)
T ss_dssp TTCCEESSSC----BCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSCCC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----hCCccccCHHHHHHHHHHHHHHHHhCCCcEEEECChhhhHHHHHhcccccCCCCChHHHHHHHHHH
Confidence 5789999999 7999999999999999 999999999999999999999999999998 5565 4443
Q ss_pred ---hhcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752 73 ---NEQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE 108 (110)
Q Consensus 73 ---~~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~ 108 (110)
++.|.+.+++.|+++||++|++|+|||++||+|+||
T Consensus 136 ~r~~~~G~~~l~~~L~~vdP~~a~~I~p~d~~Ri~RALE 174 (340)
T 3d3q_A 136 KELEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIE 174 (340)
T ss_dssp HTTSSSCHHHHHHHHHHHCHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHhhCcHHHhhcCccCchhhhhHHH
Confidence 457999999999999999999999999999999997
No 6
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.65 E-value=1.3e-16 Score=127.34 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=54.6
Q ss_pred ccCCccceecccCCCCCC-CCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 4 SRLEGHFVVDFMRSWLDC-WEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 4 ~~~vpHhli~~v~~~~d~-~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
..++||||||+ ++| .+.|++++|+++| +.|++++++|++||+|||||+|++++++|+
T Consensus 92 ~~gvphhlidi----~~~~~e~~s~~~F~~~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~ 150 (339)
T 3a8t_A 92 RGGVPHHLLGE----VDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDR 150 (339)
T ss_dssp GTTCCEESSSC----BCGGGCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSS
T ss_pred HcCCCEeeccc----cCcccCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCC
Confidence 36899999999 799 8999999999999 999999999999999999999999999997
No 7
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.36 E-value=3.8e-07 Score=68.26 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=49.2
Q ss_pred cCCccceecccCCCCCCCC-CCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcc
Q psy15752 5 RLEGHFVVDFMRSWLDCWE-KETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWT 63 (110)
Q Consensus 5 ~~vpHhli~~v~~~~d~~e-~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g 63 (110)
.+++||+++. .+|.+ .|++..|.+.+ ..+ ++.++|+.||++||++.|+++++.+
T Consensus 54 ~~~~~~~~~~----~~~~~~~~~~~~f~~~~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~ 109 (253)
T 2ze6_A 54 QSTRRIYLDS----RPLTEGILDAESAHRRLIFEV-DWRKSEEGLILEGGSISLLNCMAKS 109 (253)
T ss_dssp TTCCEECSCC----CCGGGCSCCHHHHHHHHHHHH-HTTTTSSEEEEEECCHHHHHHHHHC
T ss_pred hCCCeEEEee----eccccccccHHHHHHHHHHHH-HHHhCCCCeEEeccHHHHHHHHHhc
Confidence 5689999998 68877 89999999999 888 8989999999999999999999876
No 8
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.70A {Thermoplasma volcanium GSS1}
Probab=81.75 E-value=2.8 Score=32.37 Aligned_cols=41 Identities=15% Similarity=0.394 Sum_probs=35.4
Q ss_pred CCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 24 KETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 24 ~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
..++....+.. +.+.++.++|+.||+.||-..=--+.+.++
T Consensus 93 ~~~~~~~~~~i~~~v~~~l~~g~~PivlGGdHsit~~~~~a~ 134 (313)
T 3pzl_A 93 SEDVEYVIDTVESVVSAVMSDGKIPIMLGGEHSITVGAVRAL 134 (313)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHh
Confidence 56788888777 999999999999999999988777777776
No 9
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A
Probab=80.99 E-value=2.4 Score=32.25 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=35.8
Q ss_pred CCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 24 KETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 24 ~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
..++....+.. +.+.+++++|+.||+.||-+.---+.+.++
T Consensus 90 ~~~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~a~ 131 (305)
T 1woh_A 90 SLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAF 131 (305)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTEEEEEEEESSGGGHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEECCCccchHHHHHHH
Confidence 45788888888 999999999999999999988877787776
No 10
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas aeruginosa} PDB: 3nip_A
Probab=80.11 E-value=2.9 Score=32.37 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=32.8
Q ss_pred CCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 24 KETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 24 ~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
..++....+.. +.+.+++++|+.||+.||-..=--+.+.++
T Consensus 95 ~~~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~al 136 (326)
T 3niq_A 95 PIDLLDSLRRIEGFYRQVHAAGTLPLSVGGDHLVTLPIFRAL 136 (326)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhhHHHHHHH
Confidence 45777777777 999999999999999999877655655554
No 11
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibioti; 1.75A {Streptomyces clavuligerus} SCOP: c.42.1.1 PDB: 1gq7_A
Probab=79.09 E-value=2.8 Score=31.97 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=32.1
Q ss_pred CCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcc
Q psy15752 24 KETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWT 63 (110)
Q Consensus 24 ~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g 63 (110)
..++....+.. +.+.++.++|+.||+.||-..---+.+.+
T Consensus 90 ~~~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~a 130 (313)
T 1gq6_A 90 PFDMNIAIDTAQSHLSGLLKANAAFLMIGGDHSLTVAALRA 130 (313)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHSSEEEEEESCGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhhHHHHHH
Confidence 46788888888 99999999999999999987654444444
No 12
>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein structure initia structural genomics of pathogenic protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP: c.42.1.1
Probab=78.87 E-value=2.6 Score=32.37 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=30.8
Q ss_pred CHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcc
Q psy15752 26 TLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWT 63 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g 63 (110)
++....+.. +.+.+++++|+.||+.||-..---+.+.+
T Consensus 93 ~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~a 131 (316)
T 2a0m_A 93 TLEEAHEKLESKVFTVLARGAFPFVIGGGNDQSAPNGRA 131 (316)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEECCcchhhHHHHHH
Confidence 788888888 99999999999999999987654444444
No 13
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A {Pseudomonas aeruginosa} SCOP: c.42.1.0
Probab=78.49 E-value=3.5 Score=31.70 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=30.4
Q ss_pred CCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHc
Q psy15752 24 KETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLW 62 (110)
Q Consensus 24 ~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~ 62 (110)
..++..-.+.. +.+.+++++|+.||+.||-+.=--+.+.
T Consensus 98 ~~~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~ 137 (319)
T 3nio_A 98 TFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILR 137 (319)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEECCcchhhHHHHH
Confidence 45777777777 9999999999999999997765444443
No 14
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis, nitrogen metabolism, manganese metalloenzyme; 2.15A {Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A* 4cev_A 5cev_A*
Probab=77.57 E-value=2.9 Score=31.56 Aligned_cols=38 Identities=18% Similarity=0.473 Sum_probs=29.2
Q ss_pred HHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 27 LQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 27 v~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
+....+.. +.+.+++++|+.||+.||-..=--+.+.|+
T Consensus 71 ~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~~~ 109 (299)
T 2cev_A 71 VAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGV 109 (299)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEecCCcccchhhhHHH
Confidence 45666666 888999999999999999877654555444
No 15
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II), nysgxrc structural genomics, NEW YORK SGX research center for struc genomics; 2.30A {Clostridium difficile}
Probab=77.54 E-value=3.1 Score=31.50 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=31.3
Q ss_pred CCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 25 ETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 25 ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
.++....... +.+.+++++|+.||+.||...=--+.+.++
T Consensus 68 ~~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~a~ 108 (287)
T 3lhl_A 68 GSTEQVLKEIYQETYKIVRDSKVPFMIGGEHLVTLPAFKAV 108 (287)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEeCCcchhhHHHHHHH
Confidence 3677777777 899999999999999999877655555444
No 16
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Probab=77.50 E-value=2.5 Score=32.83 Aligned_cols=39 Identities=5% Similarity=0.296 Sum_probs=30.2
Q ss_pred CHHHHH-HHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 26 TLQSYS-GRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 26 sv~~f~-~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
++..++ +.. +.+.+++++|+.||+.||-..---+.+.|+
T Consensus 61 ~v~~~~~~~l~~~v~~il~~g~~PivLGGdHsia~g~i~a~ 101 (330)
T 4g3h_A 61 DYYLFCKENLIPCMKEVFEKKEFPLILSSEHANMFGIFQAF 101 (330)
T ss_dssp HHHHHHHHTHHHHHHHHHTSSSCEEEECSSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCcchhhHHHHHHH
Confidence 455666 666 889999999999999999887655555554
No 17
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Probab=76.17 E-value=2.6 Score=31.90 Aligned_cols=38 Identities=5% Similarity=0.053 Sum_probs=30.1
Q ss_pred HHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 27 LQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 27 v~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
+....+.. +.+.+++++|+.||+.||-..=--+.+.++
T Consensus 69 ~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~~~ 107 (306)
T 1pq3_A 69 VGLANQELAEVVSRAVSDGYSCVTLGGDHSLAIGTISGH 107 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEcCcccchHhHHHHH
Confidence 67777777 889999999999999999876655555554
No 18
>4dz4_A Agmatinase; hydrolase; 1.70A {Burkholderia thailandensis}
Probab=75.96 E-value=2.4 Score=32.82 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=31.3
Q ss_pred CCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 24 KETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 24 ~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
..++....+.. +.+.+++++|+.||+.||-+.=--+.+.++
T Consensus 108 ~~~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~a~ 149 (324)
T 4dz4_A 108 AHHPLSIKPAIVEHARTILQSDARMLTLGGDHYITYPLLIAH 149 (324)
T ss_dssp TTSGGGHHHHHHHHHHHHHTTTCEEEEEESSGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEeCCcchhhHHHHHHH
Confidence 34666777777 999999999999999999876554555443
No 19
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid inhibit perfectly twinned crystal; HET: ABH; 1.29A {Homo sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A 2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A* 3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 3sjt_A* 3skk_A* 3tf3_A 3th7_A 3the_A* ...
Probab=73.83 E-value=3.2 Score=31.74 Aligned_cols=38 Identities=11% Similarity=0.333 Sum_probs=29.2
Q ss_pred CHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcc
Q psy15752 26 TLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWT 63 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g 63 (110)
++....+.. +.+.+++++|+.||+.||-..=--+.+.+
T Consensus 72 ~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~a 110 (322)
T 2aeb_A 72 SVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISG 110 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEecCccccchHHHHH
Confidence 466777777 88899999999999999987654444444
No 20
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Probab=73.35 E-value=4.3 Score=31.19 Aligned_cols=41 Identities=24% Similarity=0.373 Sum_probs=32.5
Q ss_pred CCCHHHHHHHH-HHHHHHHhcCC--ceEEEccChhHHHHHHccc
Q psy15752 24 KETLQSYSGRI-NKIDDILQRNK--VPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 24 ~ysv~~f~~~a-~~i~~i~~~gk--~PIlVGGTglY~~all~g~ 64 (110)
..++....+.. +.+.+++++|+ .||+.||...=--+.+.++
T Consensus 97 ~~~~~~~~~~i~~~v~~~l~~g~~~~pi~lGGdHsit~~~~~al 140 (322)
T 3m1r_A 97 VTDIVKSHHHIFQTMHALLSDHPDWVPLILGGDNSISYSTIKAI 140 (322)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHCTTEEEEEEESCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCceeEEeCCCccccHHHHHHH
Confidence 46788888887 99999999999 9999999876555555443
No 21
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex; HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A* 3sl0_A*
Probab=72.61 E-value=4.3 Score=32.95 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=31.0
Q ss_pred CCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcc
Q psy15752 24 KETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWT 63 (110)
Q Consensus 24 ~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g 63 (110)
...+....+.. +.+.+++++|+.||+.||-..=--+.+.|
T Consensus 164 ~~~v~~~~~~L~~~V~~il~~G~~PIvLGGDHSIalg~i~a 204 (413)
T 3sl1_A 164 IKEIGIFSKNLFDTMSNELRKKNFVLNIGGDHGVAFSSILS 204 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEESSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCchHhHHHHHHH
Confidence 34667777777 89999999999999999987654444444
No 22
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=62.25 E-value=2.8 Score=31.90 Aligned_cols=20 Identities=20% Similarity=0.544 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCceEEEccCh
Q psy15752 35 NKIDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTg 54 (110)
+.|+.+++.|.+||+.||.|
T Consensus 173 ~~i~~lL~~g~IpIi~Gg~G 192 (310)
T 2we5_A 173 ETINTLIKNDIITISCGGGG 192 (310)
T ss_dssp HHHHHHHHTTCEEECCGGGC
T ss_pred HHHHHHHHCCCEEEEECCCC
Confidence 77888999999999999866
No 23
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on protein structural and function analyses; HET: LYS; 2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A
Probab=62.16 E-value=5 Score=30.09 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=26.4
Q ss_pred HHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752 27 LQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI 64 (110)
Q Consensus 27 v~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~ 64 (110)
+...++.. +.+.+ +++|+.||+.||-..---+.+.++
T Consensus 69 ~~~~~~~i~~~v~~-l~~g~~pi~lGGdHsit~~~~~a~ 106 (290)
T 2ef5_A 69 IRAAALVLKERLAA-LPEGVFPIVLGGDHSLSMGSVAGA 106 (290)
T ss_dssp HHHHHHHHHHHHHT-SCTTEEEEEEESSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hhcCceEEEEcCcccchHHHHHHH
Confidence 44566666 77777 889999999999876544444443
No 24
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=61.13 E-value=0.1 Score=38.77 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=22.4
Q ss_pred CCccce----ecccCCCCCCCCCCCHHHHHHHH
Q psy15752 6 LEGHFV----VDFMRSWLDCWEKETLQSYSGRI 34 (110)
Q Consensus 6 ~vpHhl----i~~v~~~~d~~e~ysv~~f~~~a 34 (110)
.+|||| +|+ +++.+.|+++.|+.++
T Consensus 84 ~i~h~lEiRGigi----id~~~~f~~~~f~~~a 112 (205)
T 2qmh_A 84 ILSHLLEIRGLGI----IDVMNLFGAGAVREDT 112 (205)
T ss_dssp SSTTEEEETTTEE----EEHHHHHCTTSBCSCC
T ss_pred cccccccccceeE----EcccccCCHHHHHhcC
Confidence 389999 999 7999999999998774
No 25
>1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae O1 biovar eltor, structure genomics, protein structure initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1
Probab=58.99 E-value=13 Score=28.48 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=29.9
Q ss_pred CCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcc
Q psy15752 24 KETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWT 63 (110)
Q Consensus 24 ~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g 63 (110)
..++....+.. +.+.+++++ +.||+.||-..---+.+.|
T Consensus 97 ~~~~~~~~~~i~~~v~~~l~~-~~pi~LGGdHsit~g~~~a 136 (336)
T 1xfk_A 97 GDELEQAQQECAQVIQQALPH-ARAIVLGGGHEIAWATFQG 136 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHTTT-CCEEEECSSTTHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHh-CCeEEEeCchhhhHHHHHH
Confidence 35788888887 999999999 9999999986654444333
No 26
>2l5q_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=58.18 E-value=3.2 Score=29.16 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=31.1
Q ss_pred hcCHHHHHHHHHhcChHHHh-cccCCChhhhhhhcc
Q psy15752 74 EQGEFTLYDMDKIRNLEHGR-DVLEQQRMQVTKWTE 108 (110)
Q Consensus 74 ~~g~~~l~~~L~~~DP~~a~-~I~~nD~~Ri~r~~~ 108 (110)
+...++|.+.+.++=|++=+ |+++.|-++|+.|||
T Consensus 84 Kas~~eL~~yf~eVLP~yD~dRVy~SDIKKliqWYN 119 (142)
T 2l5q_A 84 KASADELHAYFAEVLPNYDRDRVHNGDIKKLISWYN 119 (142)
T ss_dssp TSCHHHHHHHHTTTCTTCCSSSTTSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCcccccchHHHHHHHHHHH
Confidence 45678999999999999865 899999999999997
No 27
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=58.02 E-value=3.6 Score=32.23 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.3
Q ss_pred HHHHHHHhcCCceEEEccChh
Q psy15752 35 NKIDDILQRNKVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTgl 55 (110)
+.|+.+++.|.+||++||.|.
T Consensus 179 ~~I~~LL~~G~IvI~aGGgGi 199 (317)
T 3kzf_A 179 GVIKTLIDNNVLVICTNGGGI 199 (317)
T ss_dssp HHHHHHHHTTCEEECCGGGCE
T ss_pred HHHHHHHHCCCEEEEeCCCCC
Confidence 578888999999999999884
No 28
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=55.97 E-value=2.5 Score=21.11 Aligned_cols=12 Identities=17% Similarity=0.731 Sum_probs=9.4
Q ss_pred cCCChhhhhhhc
Q psy15752 96 LEQQRMQVTKWT 107 (110)
Q Consensus 96 ~~nD~~Ri~r~~ 107 (110)
...|++||.||-
T Consensus 5 tsrdrrriarwe 16 (26)
T 1hji_B 5 TSRDRRRIARWE 16 (26)
T ss_dssp CHHHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 456899999984
No 29
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=54.46 E-value=4.2 Score=31.05 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=17.6
Q ss_pred HHHHHHHhcCCceEEEccChh
Q psy15752 35 NKIDDILQRNKVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTgl 55 (110)
+.|+.+++.|.+||+.||.|.
T Consensus 177 ~~i~~lL~~g~IpV~~Gg~gi 197 (314)
T 1e19_A 177 ETIKKLVERGVIVIASGGGGV 197 (314)
T ss_dssp HHHHHHHHTTCEEECSGGGCE
T ss_pred HHHHHHHHCCCEEEEeCCCcc
Confidence 678899999999999887653
No 30
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=51.88 E-value=5.7 Score=30.32 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCceEEEccC
Q psy15752 35 NKIDDILQRNKVPIIVGGT 53 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGT 53 (110)
+.|+.+++.|.+||+.||.
T Consensus 177 ~~i~~lL~~g~IpI~~g~~ 195 (316)
T 2e9y_A 177 DLIAEASAESPAVVALGGG 195 (316)
T ss_dssp HHHHHHHHHCSEEEECGGG
T ss_pred HHHHHHHHCCCEEEEECCC
Confidence 7788899999999998764
No 31
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=50.80 E-value=14 Score=25.44 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=16.3
Q ss_pred HHHH-HHHHHHHhcC--CceEEEccCh
Q psy15752 31 SGRI-NKIDDILQRN--KVPIIVGGTN 54 (110)
Q Consensus 31 ~~~a-~~i~~i~~~g--k~PIlVGGTg 54 (110)
...+ +.++.+.+.| .+||+|||..
T Consensus 83 ~~~~~~~i~~L~~~g~~~i~v~vGG~~ 109 (161)
T 2yxb_A 83 LHLMKRLMAKLRELGADDIPVVLGGTI 109 (161)
T ss_dssp HHHHHHHHHHHHHTTCTTSCEEEEECC
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 3444 5666666665 5999999964
No 32
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=48.32 E-value=14 Score=25.93 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=15.1
Q ss_pred HHHHHHHhcC---CceEEEccChh
Q psy15752 35 NKIDDILQRN---KVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~~g---k~PIlVGGTgl 55 (110)
+.++.+.++| ++||+|||.+.
T Consensus 158 ~~i~~l~~~~~~~~~~v~vGG~~~ 181 (210)
T 1y80_A 158 STIDALIAAGLRDRVKVIVGGAPL 181 (210)
T ss_dssp HHHHHHHHTTCGGGCEEEEESTTC
T ss_pred HHHHHHHhcCCCCCCeEEEECCCC
Confidence 5555665555 49999999864
No 33
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=45.87 E-value=13 Score=26.87 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=15.9
Q ss_pred HHHHHHHhcC---CceEEEccChh
Q psy15752 35 NKIDDILQRN---KVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~~g---k~PIlVGGTgl 55 (110)
+.++.+.++| ++||+|||..+
T Consensus 164 ~~i~~l~~~~~~~~v~v~vGG~~~ 187 (215)
T 3ezx_A 164 DLMDRLNEEKLRDSVKCMFGGAPV 187 (215)
T ss_dssp HHHHHHHHTTCGGGSEEEEESSSC
T ss_pred HHHHHHHHcCCCCCCEEEEECCCC
Confidence 6666676766 69999999843
No 34
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=45.82 E-value=31 Score=26.59 Aligned_cols=34 Identities=6% Similarity=0.123 Sum_probs=24.7
Q ss_pred CCCCCCHHHHHHHH-HHHHHHHhcC-CceEEEccCh
Q psy15752 21 CWEKETLQSYSGRI-NKIDDILQRN-KVPIIVGGTN 54 (110)
Q Consensus 21 ~~e~ysv~~f~~~a-~~i~~i~~~g-k~PIlVGGTg 54 (110)
|...++...|...+ +.++.|.+.+ +.||+|||.+
T Consensus 148 P~~~~~~~~w~~~~~~~i~~IR~~dp~~~Iiv~g~~ 183 (345)
T 3jug_A 148 WYGSWDGAAWADGYIDVIPKLRDAGLTHTLMVDAAG 183 (345)
T ss_dssp CCCSSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 44445677787777 7888888765 4699999864
No 35
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=44.13 E-value=8.2 Score=25.76 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=15.8
Q ss_pred HHH-HHHHHHHhcC--CceEEEccCh
Q psy15752 32 GRI-NKIDDILQRN--KVPIIVGGTN 54 (110)
Q Consensus 32 ~~a-~~i~~i~~~g--k~PIlVGGTg 54 (110)
..+ +.++.+.++| .++|+|||..
T Consensus 69 ~~~~~~i~~l~~~g~~~i~v~vGG~~ 94 (137)
T 1ccw_A 69 IDCKGLRQKCDEAGLEGILLYVGGNI 94 (137)
T ss_dssp HHHTTHHHHHHHTTCTTCEEEEEESC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 344 5566666655 4999999975
No 36
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase, transferase, 9-deazaguanine, multisubstrate analogue inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos taurus} SCOP: c.56.2.1 PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A* 2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A* 2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A* 1vfn_A* ...
Probab=43.24 E-value=25 Score=26.68 Aligned_cols=33 Identities=9% Similarity=0.089 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEccChhH
Q psy15752 24 KETLQSYSGRINKIDDILQRNKVPIIVGGTNYY 56 (110)
Q Consensus 24 ~ysv~~f~~~a~~i~~i~~~gk~PIlVGGTglY 56 (110)
.|+-....+.++.|++.....-.-=|+||||||
T Consensus 4 ~~~~~~~~~~~~~i~~~~~~~p~igiI~GSGl~ 36 (284)
T 3fuc_A 4 GYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLG 36 (284)
T ss_dssp CCCHHHHHHHHHHHHHHCCCCCSEEEEECTTCG
T ss_pred chHHHHHHHHHHHHHHhcCCCCcEEEEecCchh
Confidence 455444433335555543322222467999999
No 37
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=42.60 E-value=15 Score=26.94 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCceEEEccCh
Q psy15752 35 NKIDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTg 54 (110)
+.+..+++.|.+||+.||+|
T Consensus 120 ~~~~~lL~~g~IpVv~~~~g 139 (243)
T 3ek6_A 120 RRAIRHLEKGRIAIFAAGTG 139 (243)
T ss_dssp HHHHHHHHTTCEEEEESTTS
T ss_pred HHHHHHHHCCcEEEEECCCC
Confidence 34567778999999999875
No 38
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=41.65 E-value=52 Score=21.59 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=25.1
Q ss_pred CCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEc
Q psy15752 20 DCWEKETLQSYSGRI-NKIDDILQRNKVPIIVG 51 (110)
Q Consensus 20 d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVG 51 (110)
|....++...|.... +.++.+.+++..+|+++
T Consensus 74 D~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~ 106 (190)
T 1ivn_A 74 DGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQ 106 (190)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 334467899999998 99999988887667776
No 39
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=39.88 E-value=17 Score=26.46 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCceEEEccCh
Q psy15752 35 NKIDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTg 54 (110)
+.+..+++.|.+||+.||+|
T Consensus 119 ~~i~~lL~~g~ipVi~~~~g 138 (240)
T 4a7w_A 119 RKAIRHLEKGRVVIFGAGTG 138 (240)
T ss_dssp HHHHHHHHTTCEEEEESTTS
T ss_pred HHHHHHHHCCCEEEEeCCCC
Confidence 44566778999999999876
No 40
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=38.60 E-value=12 Score=27.14 Aligned_cols=19 Identities=26% Similarity=0.718 Sum_probs=14.3
Q ss_pred HHHHHHHhcCCceEEEccC
Q psy15752 35 NKIDDILQRNKVPIIVGGT 53 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGT 53 (110)
+.|+++.++-.+||++||=
T Consensus 140 ~iI~~i~~~~~~PiIaGGl 158 (192)
T 3kts_A 140 EQVQKMTQKLHIPVIAGGL 158 (192)
T ss_dssp HHHHHHHHHHCCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEECC
Confidence 4566666667889999993
No 41
>4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A
Probab=36.74 E-value=36 Score=23.95 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHH-HHHHHHHhcCCceEEEccC
Q psy15752 23 EKETLQSYSGRI-NKIDDILQRNKVPIIVGGT 53 (110)
Q Consensus 23 e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGT 53 (110)
..++..+|..++ ..++.+.++....+|+|-|
T Consensus 97 ~~~~~~~~~~d~~~~~~~l~~~~~~v~lvG~S 128 (281)
T 4fbl_A 97 AASTASDWTADIVAAMRWLEERCDVLFMTGLS 128 (281)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHCSEEEEEEET
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCeEEEEEEC
Confidence 467888999998 8888887777767888865
No 42
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=36.63 E-value=39 Score=26.14 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=28.0
Q ss_pred HHHHHHH-HHHHHHHh-----cCCceEEEccChhHHHHHHc
Q psy15752 28 QSYSGRI-NKIDDILQ-----RNKVPIIVGGTNYYIESLLW 62 (110)
Q Consensus 28 ~~f~~~a-~~i~~i~~-----~gk~PIlVGGTglY~~all~ 62 (110)
..|.+.+ +.+.+++. .+..|||++|.|+..+.+..
T Consensus 196 ~~f~~~V~~~l~~~~~~~~~~~~~~~lilaGp~~~k~~f~~ 236 (373)
T 3agk_A 196 DEFFKKVGEEASNLLVPLAEKGVLKGVIVAGPGLAKQEFVE 236 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEESTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccCcceEEEECChHHHHHhhh
Confidence 4788887 88887773 45679999999999988883
No 43
>3phb_E Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.30A {Homo sapiens}
Probab=36.01 E-value=27 Score=27.23 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=17.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCceEEEccChhH
Q psy15752 23 EKETLQSYSGRINKIDDILQRNKVPIIVGGTNYY 56 (110)
Q Consensus 23 e~ysv~~f~~~a~~i~~i~~~gk~PIlVGGTglY 56 (110)
..|+-....+.|+.|.+.....-.-=|+||||||
T Consensus 38 ~~~~~~~~~~~~~~i~~~~~~~p~igiI~GSGL~ 71 (324)
T 3phb_E 38 NGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLG 71 (324)
T ss_dssp CSSCHHHHHHHHHHHHTTCCCCCSEEEEECTTCG
T ss_pred ccchHHHHHHHHHHHHHhcCCCCcEEEEecCcHH
Confidence 4565544433334444322211112468999999
No 44
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=35.97 E-value=41 Score=26.43 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=28.0
Q ss_pred HHHHHHHH-HHHHHHHhc-CCceEEEccChhHHHHHHc
Q psy15752 27 LQSYSGRI-NKIDDILQR-NKVPIIVGGTNYYIESLLW 62 (110)
Q Consensus 27 v~~f~~~a-~~i~~i~~~-gk~PIlVGGTglY~~all~ 62 (110)
...|.+.+ +.+.+.+.. +-.+||++|.|++-+-+.+
T Consensus 188 ~~~F~~~V~~~l~~~~~~~~v~~lIlaGPg~~k~~f~~ 225 (386)
T 2vgn_A 188 TEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMD 225 (386)
T ss_dssp HHHHHHHHHHHHHHHCCTTTCSEEEEEESTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHH
Confidence 46888888 888888754 4469999999998776653
No 45
>1b78_A Pyrophosphatase; structural genomics, hyperthermal protein; 2.20A {Methanocaldococcus jannaschii} SCOP: c.51.4.1 PDB: 2mjp_A*
Probab=34.28 E-value=6.3 Score=28.63 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=42.2
Q ss_pred HHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccCCCC-CchhhhcCHHHHHHHHHhc
Q psy15752 28 QSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDN-KTNINEQGEFTLYDMDKIR 87 (110)
Q Consensus 28 ~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p~-~~~~~~~g~~~l~~~L~~~ 87 (110)
..|..-| .+...+.+.-..|+|+=-|||+++|| +|.+-+- ..-....+.+.|.++|+.+
T Consensus 48 ~tf~enA~~KA~~a~~~~g~p~laDDSGL~vdAL-~G~PGvySar~~~~~~~~~Ll~~L~~~ 108 (193)
T 1b78_A 48 GTLEEVAEFGAKWVYNILKKPVIVEDSGFFVEAL-NGFPGTYSKFVQETIGNEGILKLLEGK 108 (193)
T ss_dssp SCHHHHHHHHHHHHHHHHCSCEEEEEEEEEEGGG-TTCEETTHHHHHHHTHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEcCEEEEhhc-CCCCcccchHHHHHHHHHHHHHHcCCC
Confidence 5688888 77777766656799999999999998 5643221 1122466788888888776
No 46
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A
Probab=33.52 E-value=72 Score=23.31 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=23.3
Q ss_pred CHHHHHHHH-HHHHHHHhcC--CceEEEccChh
Q psy15752 26 TLQSYSGRI-NKIDDILQRN--KVPIIVGGTNY 55 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~g--k~PIlVGGTgl 55 (110)
+...|...+ +.++.|.+.+ +.+|+|||.+.
T Consensus 138 ~~~~w~~~~~~~~~~IR~~~~~~~~I~v~g~~~ 170 (305)
T 1h1n_A 138 DQTLVLNLNQAAIDGIRSAGATSQYIFVEGNSW 170 (305)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCSSCEEEECTGG
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEccccc
Confidence 677888888 8888888654 57999998653
No 47
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina}
Probab=33.40 E-value=69 Score=24.48 Aligned_cols=29 Identities=10% Similarity=0.282 Sum_probs=23.2
Q ss_pred CHHHHHHHH-HHHHHHHhcCC--ceEEEccCh
Q psy15752 26 TLQSYSGRI-NKIDDILQRNK--VPIIVGGTN 54 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~gk--~PIlVGGTg 54 (110)
+...|...+ +.++.|++.+. .+|+|||.+
T Consensus 154 ~~~~w~~~~~~~i~aIR~~~~~~~~Iiv~g~~ 185 (340)
T 3qr3_A 154 NINTWAATVQEVVTAIRNAGATSQFISLPGND 185 (340)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCSSCEEEECSG
T ss_pred CHHHHHHHHHHHHHHHHhhCCCccEEEEeCCc
Confidence 677888888 88888888765 499999975
No 48
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=33.36 E-value=18 Score=25.12 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=24.7
Q ss_pred HHHHHHHHhcChHHHhcccCCChhhhhhhc
Q psy15752 78 FTLYDMDKIRNLEHGRDVLEQQRMQVTKWT 107 (110)
Q Consensus 78 ~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~ 107 (110)
+++|....+ ||+..++..+.|..||.+++
T Consensus 55 ~afW~eVs~-DpeL~~QF~~~N~~rmk~G~ 83 (134)
T 1fr2_B 55 KAVWEEVSK-DPELSKNLNPSNKSSVSKGY 83 (134)
T ss_dssp HHHHHHHHH-CHHHHTTSCHHHHHHHHTTC
T ss_pred HHHHHHHhc-CHHHHHHhCHHHHHHHHCCC
Confidence 567777766 99999999999999998765
No 49
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=33.21 E-value=18 Score=25.01 Aligned_cols=29 Identities=3% Similarity=-0.009 Sum_probs=24.6
Q ss_pred HHHHHHHHhcChHHHhcccCCChhhhhhhc
Q psy15752 78 FTLYDMDKIRNLEHGRDVLEQQRMQVTKWT 107 (110)
Q Consensus 78 ~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~ 107 (110)
+++|....+ ||+..++..+.|..||.+++
T Consensus 52 ~afW~eVs~-DpeL~~QF~~~N~~rmk~G~ 80 (131)
T 2jb0_B 52 KKFWEEVSK-DPELSKQFSRNNNDRMKVGK 80 (131)
T ss_dssp HHHHHHHHH-CHHHHTTSCHHHHHHHHTTC
T ss_pred HHHHHHHhc-CHHHHHHhhHHHHHHHHCCC
Confidence 567777766 99999999999999998765
No 50
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=32.93 E-value=85 Score=22.06 Aligned_cols=80 Identities=9% Similarity=-0.129 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCceEEEccChhHHHHH---HcccCCCCCchh-----hhcCHHHHH-HHHHhcChHHHhccc
Q psy15752 26 TLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESL---LWTILLDNKTNI-----NEQGEFTLY-DMDKIRNLEHGRDVL 96 (110)
Q Consensus 26 sv~~f~~~a~~i~~i~~~gk~PIlVGGTglY~~al---l~g~~~p~~~~~-----~~~g~~~l~-~~L~~~DP~~a~~I~ 96 (110)
+...+.+.++.|..+.+.|..+|||=|.|-..+.+ ...+.+++.+.+ ...+...|. +.|++..-. . +
T Consensus 16 ~~~~~~~~~~~i~~l~~~g~~vvlV~ggG~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~---~-~ 91 (226)
T 2j4j_A 16 NVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYM---H-V 91 (226)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTSBCS---C-C
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEECcchHhchhHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHhCCC---C-C
Confidence 33444444477777777787666664446666664 333334322211 112223332 244433210 0 4
Q ss_pred CCChhhhhhhccc
Q psy15752 97 EQQRMQVTKWTEK 109 (110)
Q Consensus 97 ~nD~~Ri~r~~~~ 109 (110)
+-|++|+.+.+++
T Consensus 92 ~~~~~~i~~ll~~ 104 (226)
T 2j4j_A 92 PQSLEEFIQDWSH 104 (226)
T ss_dssp CSSHHHHHHHHTT
T ss_pred cCCHHHHHHHHHC
Confidence 6778888777664
No 51
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=32.72 E-value=84 Score=21.02 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHH-HHHHHHHhcCCceEEEc
Q psy15752 22 WEKETLQSYSGRI-NKIDDILQRNKVPIIVG 51 (110)
Q Consensus 22 ~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVG 51 (110)
...+++..|.... +.++.+.+.|..+|+++
T Consensus 90 ~~~~~~~~~~~~l~~~i~~~~~~~~~vil~~ 120 (240)
T 3mil_A 90 PQSVPLPEFIDNIRQMVSLMKSYHIRPIIIG 120 (240)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence 4567899999998 99999999887777776
No 52
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=32.62 E-value=46 Score=23.13 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=29.5
Q ss_pred HHH-HHHHHHHhcCCceEEEccChhHHHHHHcccCCCCCchh---hhcCHHHHHHHHHh
Q psy15752 32 GRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNI---NEQGEFTLYDMDKI 86 (110)
Q Consensus 32 ~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p~~~~~---~~~g~~~l~~~L~~ 86 (110)
..+ ..+.+.+++..++.++|||-.- .+.|...++.+-+ .+++...+.+.|++
T Consensus 19 ~~~L~~i~~~L~~~~V~~~l~Gs~Al---~~~G~~~~~~DIDi~i~~~da~~~~~~L~~ 74 (169)
T 2fcl_A 19 LRVLRXIYDRLXNEXVNWVVTGSLSF---ALQGVPVEVHDIDIQTDEEGAYEIERIFSE 74 (169)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEHHHHH---HHTTCCCCCCSEEEEECHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHhcCCCEEEeHHHHH---HHcCCCCCCCccEEEecccCHHHHHHHHHH
Confidence 344 7777777788888777666321 3466643322211 34556666666654
No 53
>3c4r_A Uncharacterized protein; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.30A {Escherichia coli O6}
Probab=31.93 E-value=7.9 Score=27.42 Aligned_cols=13 Identities=23% Similarity=0.764 Sum_probs=11.1
Q ss_pred CChhhhhhhcccC
Q psy15752 98 QQRMQVTKWTEKE 110 (110)
Q Consensus 98 nD~~Ri~r~~~~~ 110 (110)
||+|||-||+.++
T Consensus 55 nNrQkIFRWL~~D 67 (151)
T 3c4r_A 55 RNTQKIFRWVEKD 67 (151)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HhHHHhHHHHhCC
Confidence 7999999998753
No 54
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=31.90 E-value=76 Score=22.94 Aligned_cols=35 Identities=6% Similarity=0.149 Sum_probs=23.4
Q ss_pred CCCCCCCHHHHHHHH-HHHHHHHhcC-CceEEEccCh
Q psy15752 20 DCWEKETLQSYSGRI-NKIDDILQRN-KVPIIVGGTN 54 (110)
Q Consensus 20 d~~e~ysv~~f~~~a-~~i~~i~~~g-k~PIlVGGTg 54 (110)
+|...++...|...+ +.++.|.+.+ +.||+|||.+
T Consensus 124 EP~~~~~~~~~~~~~~~~~~~IR~~d~~~~i~v~~~~ 160 (294)
T 2whl_A 124 EWYGSWDGSAWADGYIDVIPKLRDAGLTHTLMVDAAG 160 (294)
T ss_dssp TCCCSSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBT
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCC
Confidence 344446666676666 7777777654 5799999864
No 55
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=31.59 E-value=20 Score=21.42 Aligned_cols=19 Identities=11% Similarity=0.051 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcChHHHhcc
Q psy15752 77 EFTLYDMDKIRNLEHGRDV 95 (110)
Q Consensus 77 ~~~l~~~L~~~DP~~a~~I 95 (110)
.+.||.+...++|+.|.||
T Consensus 6 Ge~Lyp~V~~~~p~~A~KI 24 (61)
T 1i2t_A 6 GERLYPRVQAMQPAFASKI 24 (61)
T ss_dssp HHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHhCcccccch
Confidence 3679999999999999887
No 56
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=31.47 E-value=23 Score=26.69 Aligned_cols=8 Identities=50% Similarity=1.178 Sum_probs=4.1
Q ss_pred CCceEEEc
Q psy15752 44 NKVPIIVG 51 (110)
Q Consensus 44 gk~PIlVG 51 (110)
|++||++|
T Consensus 80 grvpViaG 87 (301)
T 1xky_A 80 KRVPVIAG 87 (301)
T ss_dssp TSSCEEEE
T ss_pred CCceEEeC
Confidence 45555544
No 57
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=31.45 E-value=52 Score=22.11 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCceEEE-ccChhHHHHHHccc
Q psy15752 35 NKIDDILQRNKVPIIV-GGTNYYIESLLWTI 64 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlV-GGTglY~~all~g~ 64 (110)
++++.+.+++..-|+| ||..+|=..+-.|+
T Consensus 84 ~~l~~l~~~~~~~i~v~GG~~l~~~~l~~~l 114 (168)
T 1cz3_A 84 DVVKFLEGKGYERVAVIGGKTVFTEFLREKL 114 (168)
T ss_dssp HHHHHHHHTTCSEEEEEECHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCEEEEECCHHHHHHHHhCCC
Confidence 5555565665445555 88888877766664
No 58
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Probab=30.92 E-value=90 Score=22.06 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHH-HHHHHHHhcC-CceEEEccC
Q psy15752 22 WEKETLQSYSGRI-NKIDDILQRN-KVPIIVGGT 53 (110)
Q Consensus 22 ~e~ysv~~f~~~a-~~i~~i~~~g-k~PIlVGGT 53 (110)
...||..+|..++ +.++.+.... +..+|||=|
T Consensus 85 ~~~~~~~~~a~dl~~~l~~l~~~~~~~~~lvGhS 118 (316)
T 3c5v_A 85 PEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHS 118 (316)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHTTCCCCEEEEEET
T ss_pred ccccCHHHHHHHHHHHHHHHhccCCCCeEEEEEC
Confidence 3569999999999 8888874322 446788844
No 59
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=30.22 E-value=48 Score=25.98 Aligned_cols=39 Identities=10% Similarity=0.300 Sum_probs=29.7
Q ss_pred CCHHHHHHHH-HHHHHHHhcCC-ceEEEccChhHHHHHHcc
Q psy15752 25 ETLQSYSGRI-NKIDDILQRNK-VPIIVGGTNYYIESLLWT 63 (110)
Q Consensus 25 ysv~~f~~~a-~~i~~i~~~gk-~PIlVGGTglY~~all~g 63 (110)
-....|.+.+ +.+.+...+.+ ..||+||.|++-+-+.+=
T Consensus 184 ~~~~~f~~~V~e~~~~~~~~~~v~~iIlaGPg~~K~~f~~~ 224 (364)
T 3obw_A 184 GIIEQNALEIATELAEYVKQYDPDAILLAGPGFFKEEVSKK 224 (364)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCSEEEEECSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCCEEEEECChHHHHHHHHH
Confidence 3567888887 77777766544 489999999998877763
No 60
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=29.67 E-value=35 Score=24.99 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=13.5
Q ss_pred HHHHHHHhcC-CceEEEccChh
Q psy15752 35 NKIDDILQRN-KVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~~g-k~PIlVGGTgl 55 (110)
+.++.+.++| .+||+|||...
T Consensus 193 ~~i~~l~~~~~~~~v~vGG~~~ 214 (258)
T 2i2x_B 193 EVNDMLLENGIKIPFACGGGAV 214 (258)
T ss_dssp HHHHHHHTTTCCCCEEEESTTC
T ss_pred HHHHHHHhcCCCCcEEEECccC
Confidence 4444454443 48999999654
No 61
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=29.48 E-value=42 Score=24.40 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=15.7
Q ss_pred HHHhcCCceEEEccChhHHHHHH
Q psy15752 39 DILQRNKVPIIVGGTNYYIESLL 61 (110)
Q Consensus 39 ~i~~~gk~PIlVGGTglY~~all 61 (110)
...-.++.-+|+||||+-=.+++
T Consensus 20 ~~~~~~~~vlVtGatG~iG~~l~ 42 (351)
T 3ruf_A 20 QLIFSPKTWLITGVAGFIGSNLL 42 (351)
T ss_dssp HHHHSCCEEEEETTTSHHHHHHH
T ss_pred hCCCCCCeEEEECCCcHHHHHHH
Confidence 33446788899999997544443
No 62
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=28.96 E-value=29 Score=22.15 Aligned_cols=20 Identities=20% Similarity=-0.011 Sum_probs=17.7
Q ss_pred CHHHHHHHHHhcChHHHhcc
Q psy15752 76 GEFTLYDMDKIRNLEHGRDV 95 (110)
Q Consensus 76 g~~~l~~~L~~~DP~~a~~I 95 (110)
=.+.||.+...++|+.|.||
T Consensus 27 LGE~LyplV~~~~p~~AgKI 46 (85)
T 1nmr_A 27 LGERLYNHIVAINPAAAAKV 46 (85)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCccccchh
Confidence 35789999999999999987
No 63
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA, glycosyltransferase, transferase; 1.80A {Streptococcus mutans} PDB: 3lba_A*
Probab=28.70 E-value=56 Score=25.19 Aligned_cols=22 Identities=5% Similarity=-0.135 Sum_probs=12.4
Q ss_pred HHHHHHHhcCCceEEEccChhH
Q psy15752 35 NKIDDILQRNKVPIIVGGTNYY 56 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTglY 56 (110)
+.|++.....-.-=|+||||||
T Consensus 46 ~~i~~~~~~~p~igiI~GSGl~ 67 (303)
T 3la8_A 46 DFLTAKGVQKPEFGLILGSGLG 67 (303)
T ss_dssp HHHHHHTCCCCSEEEECCTTCG
T ss_pred HHHHHhcCCCCeEEEEccCcHh
Confidence 4454433222223477999998
No 64
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Probab=28.33 E-value=43 Score=24.82 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=19.2
Q ss_pred CCCHHHHHHHH-HHHHHHHhcCCceEEEccC
Q psy15752 24 KETLQSYSGRI-NKIDDILQRNKVPIIVGGT 53 (110)
Q Consensus 24 ~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGT 53 (110)
.-|..+ ..++ +.|++..+ .+++|+.|||
T Consensus 168 ~At~e~-a~ev~~~IR~~l~-~~vrIlYGGS 196 (233)
T 2jgq_A 168 SASLED-IYLTHGFLKQILN-QKTPLLYGGS 196 (233)
T ss_dssp CCCHHH-HHHHHHHHHHHSC-TTSCEEEESS
T ss_pred CCCHHH-HHHHHHHHHHHHh-cCCcEEEcCC
Confidence 334443 3445 77777765 5799999998
No 65
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A {Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A
Probab=28.31 E-value=69 Score=23.87 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=12.3
Q ss_pred HHHHHHHhc-CCceEEEccChhH
Q psy15752 35 NKIDDILQR-NKVPIIVGGTNYY 56 (110)
Q Consensus 35 ~~i~~i~~~-gk~PIlVGGTglY 56 (110)
+.|.+.... .-.-=|+||||||
T Consensus 19 ~~i~~~~~~~~p~igiI~GSGl~ 41 (266)
T 1qe5_A 19 DHIAQATGVEGHDMALVLGSGWG 41 (266)
T ss_dssp HHHHHHHCCSCCSEEEECCTTCT
T ss_pred HHHHHhcCCCCCCEEEEeCCchh
Confidence 555553322 1123466999998
No 66
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A*
Probab=27.98 E-value=44 Score=25.36 Aligned_cols=9 Identities=11% Similarity=0.128 Sum_probs=7.9
Q ss_pred EEEccChhH
Q psy15752 48 IIVGGTNYY 56 (110)
Q Consensus 48 IlVGGTglY 56 (110)
=|+||||||
T Consensus 37 giI~GSGl~ 45 (287)
T 3odg_A 37 AFILGSGLG 45 (287)
T ss_dssp EEEECTTTG
T ss_pred EEEecCChh
Confidence 478999999
No 67
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=27.82 E-value=76 Score=21.54 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=20.6
Q ss_pred HH-HHHHHHHhcCCceEEE-ccChhHHHHHHccc
Q psy15752 33 RI-NKIDDILQRNKVPIIV-GGTNYYIESLLWTI 64 (110)
Q Consensus 33 ~a-~~i~~i~~~gk~PIlV-GGTglY~~all~g~ 64 (110)
+. ++++.+.+++-.-|+| ||..+|=..|-.|+
T Consensus 106 ~l~~~l~~L~~~~~~~i~v~GG~~l~~~~l~~gl 139 (189)
T 2gd9_A 106 NILEEVNKLKKNPGKDIWLYGGASLITTFINLGL 139 (189)
T ss_dssp HHHHHHHHHHHSCCSEEEEEECHHHHHHHHHTTC
T ss_pred CHHHHHHHHHhCCCCeEEEEChHHHHHHHHHCCC
Confidence 44 7777777776555666 77777765555554
No 68
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A*
Probab=27.69 E-value=52 Score=24.56 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=12.2
Q ss_pred HHHHHHHhcCC-ceEEEccChhH
Q psy15752 35 NKIDDILQRNK-VPIIVGGTNYY 56 (110)
Q Consensus 35 ~~i~~i~~~gk-~PIlVGGTglY 56 (110)
+.|.+.....+ .-=|+||||||
T Consensus 17 ~~i~~~~~~~~~~igiI~GSGl~ 39 (268)
T 1g2o_A 17 QVIADRTGIGEHDVAVVLGSGWL 39 (268)
T ss_dssp HHHHHHHSCSCCSEEEEECTTCG
T ss_pred HHHHHhcCCCCCCEEEEcCCchh
Confidence 55555332211 23466999998
No 69
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=27.53 E-value=83 Score=20.28 Aligned_cols=29 Identities=3% Similarity=0.075 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHH-HHHHHHHhcCCceEEEc
Q psy15752 23 EKETLQSYSGRI-NKIDDILQRNKVPIIVG 51 (110)
Q Consensus 23 e~ysv~~f~~~a-~~i~~i~~~gk~PIlVG 51 (110)
..++...|.... +.++.+.+++..+|++|
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~vvl~~ 110 (185)
T 3hp4_A 81 RGFPVKKMQTNLTALVKKSQAANAMTALME 110 (185)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCcCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 457889999998 99999999877677776
No 70
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A {Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A* 3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A* 3iex_A*
Probab=27.22 E-value=69 Score=24.12 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=12.4
Q ss_pred HHHHHHHhcCCceEEEccChhH
Q psy15752 35 NKIDDILQRNKVPIIVGGTNYY 56 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTglY 56 (110)
+.|.+-....-.-=|+||||||
T Consensus 17 ~~i~~~~~~~p~igiI~GSGl~ 38 (287)
T 1tcv_A 17 HHIQKLTSIVPEIGIICGSGLG 38 (287)
T ss_dssp HHHHHHCCCCCSEEEECCTTCG
T ss_pred HHHHHhCCCCCcEEEEcCCchh
Confidence 5555532221123466999999
No 71
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0
Probab=26.89 E-value=51 Score=21.77 Aligned_cols=31 Identities=26% Similarity=0.406 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHH-HHHHHHHhcCCceEEEccC
Q psy15752 22 WEKETLQSYSGRI-NKIDDILQRNKVPIIVGGT 53 (110)
Q Consensus 22 ~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGT 53 (110)
.+.|+..++.+++ +.++.+ ..++..+|||-|
T Consensus 50 ~~~~~~~~~~~~l~~~l~~l-~~~~~~~lvGhS 81 (258)
T 3dqz_A 50 QAVETVDEYSKPLIETLKSL-PENEEVILVGFS 81 (258)
T ss_dssp GGCCSHHHHHHHHHHHHHTS-CTTCCEEEEEET
T ss_pred CccccHHHhHHHHHHHHHHh-cccCceEEEEeC
Confidence 3469999999988 777765 333667888744
No 72
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=26.57 E-value=99 Score=20.12 Aligned_cols=28 Identities=11% Similarity=0.052 Sum_probs=22.6
Q ss_pred CCCHHHHHHHH-HHHHHHHhcCCceEEEc
Q psy15752 24 KETLQSYSGRI-NKIDDILQRNKVPIIVG 51 (110)
Q Consensus 24 ~ysv~~f~~~a-~~i~~i~~~gk~PIlVG 51 (110)
.+++..|.... +.++.+.+.+..+|+++
T Consensus 93 ~~~~~~~~~~~~~~i~~~~~~~~~vil~~ 121 (204)
T 3p94_A 93 VIALENVFGNLVSMAELAKANHIKVIFCS 121 (204)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 37899999988 89999988777666665
No 73
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae}
Probab=26.18 E-value=55 Score=23.21 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCceEEEccChhHHHHH
Q psy15752 35 NKIDDILQRNKVPIIVGGTNYYIESL 60 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTglY~~al 60 (110)
++++.+.++++--.|+||..+|=+++
T Consensus 105 eal~~lk~~~~~i~ViGG~~ly~~~l 130 (190)
T 3ix9_A 105 SVLDWYSAQEKNLYIVGGKQIFQAFE 130 (190)
T ss_dssp HHHHHHHTSCSCEEEEECHHHHHHHG
T ss_pred HHHHHHHhCCCCEEEECCHHHHHHHH
Confidence 66666655567778889999986665
No 74
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}
Probab=26.01 E-value=25 Score=25.23 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=12.2
Q ss_pred CCceEEEccChhHHHHHH
Q psy15752 44 NKVPIIVGGTNYYIESLL 61 (110)
Q Consensus 44 gk~PIlVGGTglY~~all 61 (110)
||.-+|.||||+==.+++
T Consensus 1 ~k~vlVTGatG~iG~~l~ 18 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWII 18 (322)
T ss_dssp CCEEEEESTTSHHHHHHH
T ss_pred CCEEEEECChhHHHHHHH
Confidence 466788899998544433
No 75
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A
Probab=25.76 E-value=80 Score=20.46 Aligned_cols=28 Identities=4% Similarity=0.074 Sum_probs=21.4
Q ss_pred CHHHHHHHH-HHHHHHHhcCCceEEEccC
Q psy15752 26 TLQSYSGRI-NKIDDILQRNKVPIIVGGT 53 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~gk~PIlVGGT 53 (110)
+..+|..++ ..++.+..+....+++|-|
T Consensus 73 ~~~~~~~d~~~~i~~l~~~~~~~~l~G~S 101 (251)
T 3dkr_A 73 NPDIWWAESSAAVAHMTAKYAKVFVFGLS 101 (251)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEEEESH
T ss_pred cHHHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 788888888 8888887775556777755
No 76
>3acd_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 3acc_A* 3acb_A*
Probab=25.28 E-value=1.7e+02 Score=20.24 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=30.9
Q ss_pred CCCHHHHHHHH-HHHHHHHh--cCCceEEEc---cChhHHHHHHcccCCCC
Q psy15752 24 KETLQSYSGRI-NKIDDILQ--RNKVPIIVG---GTNYYIESLLWTILLDN 68 (110)
Q Consensus 24 ~ysv~~f~~~a-~~i~~i~~--~gk~PIlVG---GTglY~~all~g~~~p~ 68 (110)
-+|..+-.+.. +...+|.+ +|+.|++|| |.-.+..-|+.-+.+|.
T Consensus 13 lis~~~I~~~i~rlA~eI~e~~~~~~~vlvgIl~Gg~~fa~~L~~~l~~~~ 63 (181)
T 3acd_A 13 QISAEAIKKRVEELGGEIARDYQGKTPHLICVLNGAFIFMADLVRAIPLPL 63 (181)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHTTTCCCEEEEEETTTHHHHHHHHTTCCSCC
T ss_pred EeCHHHHHHHHHHHHHHHHHHhCCCCcEEEEEecCcHHHHHHHHHhcCCCc
Confidence 35666666665 55555554 468899998 88788888887776553
No 77
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=24.75 E-value=75 Score=25.01 Aligned_cols=36 Identities=11% Similarity=0.224 Sum_probs=25.8
Q ss_pred HHHHHHHH-HHHHHHHhc-CCceEEEccChhHHHHHHc
Q psy15752 27 LQSYSGRI-NKIDDILQR-NKVPIIVGGTNYYIESLLW 62 (110)
Q Consensus 27 v~~f~~~a-~~i~~i~~~-gk~PIlVGGTglY~~all~ 62 (110)
...|.+.+ +.+.+.... +-..||++|.|++-+.+..
T Consensus 182 ~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~ 219 (390)
T 3mca_B 182 LDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYD 219 (390)
T ss_dssp HHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHH
Confidence 34777776 777666543 3458999999998776664
No 78
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=24.64 E-value=34 Score=25.22 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=15.7
Q ss_pred HHHHHHhcCCceEEEccCh
Q psy15752 36 KIDDILQRNKVPIIVGGTN 54 (110)
Q Consensus 36 ~i~~i~~~gk~PIlVGGTg 54 (110)
.++.+++.|.+||+.|+.|
T Consensus 133 ~i~~lL~~g~ipVi~g~~g 151 (270)
T 2ogx_B 133 AVPLSLAEVNAVVFSGMPP 151 (270)
T ss_dssp HHHHHCTTCCEEEEECSCT
T ss_pred HHHHHHhCCCEEEEeCCcc
Confidence 3677888999999999854
No 79
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=24.58 E-value=22 Score=26.07 Aligned_cols=10 Identities=30% Similarity=0.730 Sum_probs=8.1
Q ss_pred EEEccChhHH
Q psy15752 48 IIVGGTNYYI 57 (110)
Q Consensus 48 IlVGGTglY~ 57 (110)
-|+||||.|=
T Consensus 122 AITGGTGiF~ 131 (195)
T 4h6b_A 122 AITGGSGIFA 131 (195)
T ss_dssp EEEEESGGGT
T ss_pred EEecCcceEc
Confidence 4789999883
No 80
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=24.51 E-value=61 Score=25.15 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=27.9
Q ss_pred CHHHHHHHH-HHHHHHHhc-CCceEEEccChhHHHHHHc
Q psy15752 26 TLQSYSGRI-NKIDDILQR-NKVPIIVGGTNYYIESLLW 62 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~-gk~PIlVGGTglY~~all~ 62 (110)
....|.+.+ +.+.+.+.. +-..||+||.|++-+.+..
T Consensus 178 ~~~~f~~~Vae~~~~~~~~~~v~~iilaGPg~~k~~f~~ 216 (357)
T 3j15_A 178 EEMKFFHDVAKTMEEVMKRENVEKAIVAGPGFVKEDFYK 216 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCEECCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCEEEEECChHHHHHHHH
Confidence 456888887 777777654 4458999999999777764
No 81
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=24.46 E-value=1.2e+02 Score=22.85 Aligned_cols=29 Identities=3% Similarity=-0.056 Sum_probs=19.1
Q ss_pred HHHHHHHHhcChHHHhcccCCChhhhhhhccc
Q psy15752 78 FTLYDMDKIRNLEHGRDVLEQQRMQVTKWTEK 109 (110)
Q Consensus 78 ~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~~ 109 (110)
+..|+..+++-| .+..||..++.++.||+
T Consensus 76 ~~f~~~~~~~~~---~~a~Pn~~H~~La~Le~ 104 (285)
T 3glr_A 76 KPFFTLAKELYP---GNYKPNVTHYFLRLLHD 104 (285)
T ss_dssp HHHHHHHHHHST---TSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh---ccCCCCHHHHHHHHHHH
Confidence 345555444333 35689999999988875
No 82
>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa}
Probab=24.06 E-value=19 Score=26.91 Aligned_cols=8 Identities=50% Similarity=0.887 Sum_probs=7.0
Q ss_pred EEccChhH
Q psy15752 49 IVGGTNYY 56 (110)
Q Consensus 49 lVGGTglY 56 (110)
|+||||||
T Consensus 20 iI~GSGl~ 27 (259)
T 3ozb_A 20 IIGGTGLT 27 (259)
T ss_dssp EEECTTST
T ss_pred EEccCCcc
Confidence 66999998
No 83
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus} SCOP: c.56.2.0
Probab=23.46 E-value=52 Score=24.88 Aligned_cols=9 Identities=33% Similarity=0.202 Sum_probs=7.7
Q ss_pred EEEccChhH
Q psy15752 48 IIVGGTNYY 56 (110)
Q Consensus 48 IlVGGTglY 56 (110)
=|+||||||
T Consensus 25 giI~GSGl~ 33 (285)
T 3khs_A 25 GIVCGSGLG 33 (285)
T ss_dssp EEEECTTCG
T ss_pred EEEecCchh
Confidence 367999999
No 84
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=23.36 E-value=57 Score=22.86 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCceEEEccChh
Q psy15752 35 NKIDDILQRNKVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTgl 55 (110)
+.+++..++-.+-|..||+|.
T Consensus 54 ~~l~~a~~~~DlVittGG~g~ 74 (172)
T 3kbq_A 54 WAFRVALEVSDLVVSSGGLGP 74 (172)
T ss_dssp HHHHHHHHHCSEEEEESCCSS
T ss_pred HHHHHHHhcCCEEEEcCCCcC
Confidence 566666667788899999964
No 85
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=23.34 E-value=68 Score=21.86 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=15.3
Q ss_pred HHHHHHHh--cCCceEEEccChh
Q psy15752 35 NKIDDILQ--RNKVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~--~gk~PIlVGGTgl 55 (110)
+.+++..+ +-.+-|..||||.
T Consensus 62 ~~l~~~~~~~~~DlVittGG~g~ 84 (169)
T 1y5e_A 62 QAVLAGYHKEDVDVVLTNGGTGI 84 (169)
T ss_dssp HHHHHHHTCTTCSEEEEECCCSS
T ss_pred HHHHHHHhcCCCCEEEEcCCCCC
Confidence 66666666 5678888899953
No 86
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A
Probab=23.24 E-value=1.4e+02 Score=20.04 Aligned_cols=31 Identities=19% Similarity=0.088 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccC
Q psy15752 21 CWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGT 53 (110)
Q Consensus 21 ~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGT 53 (110)
+...|+..++.+++ ..++.+ ..+..++||-|
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~l--~~~~~~lvGhS 118 (293)
T 3hss_A 87 NAEGFTTQTMVADTAALIETL--DIAPARVVGVS 118 (293)
T ss_dssp TCCSCCHHHHHHHHHHHHHHH--TCCSEEEEEET
T ss_pred CcccCCHHHHHHHHHHHHHhc--CCCcEEEEeeC
Confidence 44679999999998 888776 23456777744
No 87
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=22.98 E-value=58 Score=27.30 Aligned_cols=21 Identities=19% Similarity=0.627 Sum_probs=14.4
Q ss_pred HHHHHHHhcC-CceEEEccChh
Q psy15752 35 NKIDDILQRN-KVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~~g-k~PIlVGGTgl 55 (110)
..++.+.++| ++||+|||...
T Consensus 168 ~~i~~Lr~~g~~i~ViVGGa~~ 189 (579)
T 3bul_A 168 NVAKEMERQGFTIPLLIGGATT 189 (579)
T ss_dssp HHHHHHHHTTCCSCEEEESTTC
T ss_pred HHHHHHHHcCCCCeEEEEcccc
Confidence 4555555554 69999999754
No 88
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=22.72 E-value=45 Score=23.39 Aligned_cols=19 Identities=11% Similarity=0.214 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCceEEEccC
Q psy15752 35 NKIDDILQRNKVPIIVGGT 53 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGT 53 (110)
+.++.+++.|.+||+.||.
T Consensus 93 ~~i~~ll~~g~ipVi~~g~ 111 (219)
T 2ij9_A 93 MEAEELSKLYRVVVMGGTF 111 (219)
T ss_dssp HHHHHHHTTCSEEEECCCS
T ss_pred HHHHHHHHCCCEEEEeCCC
Confidence 4567888999999999864
No 89
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}
Probab=22.63 E-value=76 Score=23.73 Aligned_cols=19 Identities=32% Similarity=0.593 Sum_probs=13.5
Q ss_pred HHHHHHHh-------cCCceEEEccC
Q psy15752 35 NKIDDILQ-------RNKVPIIVGGT 53 (110)
Q Consensus 35 ~~i~~i~~-------~gk~PIlVGGT 53 (110)
+.|++.++ ..+++|+.|||
T Consensus 187 ~~IR~~l~~~~~~~~a~~vrIlYGGS 212 (250)
T 1yya_A 187 QAIRKALSERYGEAFASRVRILYGGS 212 (250)
T ss_dssp HHHHHHHHHHHCHHHHTTCEEEEESS
T ss_pred HHHHHHHHHhcCccccCceeEEEcCC
Confidence 55555543 25799999998
No 90
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A*
Probab=22.35 E-value=1.3e+02 Score=21.57 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHH-HHHHHHHhc-CCceEEEccChhH
Q psy15752 21 CWEKETLQSYSGRI-NKIDDILQR-NKVPIIVGGTNYY 56 (110)
Q Consensus 21 ~~e~ysv~~f~~~a-~~i~~i~~~-gk~PIlVGGTglY 56 (110)
|....+...|...+ +.++.|.+. .+.+|+|||.+..
T Consensus 137 P~~~~~~~~~~~~~~~~~~~iR~~~p~~~i~v~~~~~~ 174 (317)
T 3aof_A 137 PHGNLTPEKWNELLEEALKVIRSIDKKHTIIIGTAEWG 174 (317)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHHCSSSCEEECCSGGG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEECCCCcC
Confidence 33345667776655 555555553 3469999987654
No 91
>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}
Probab=22.34 E-value=34 Score=24.01 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=14.3
Q ss_pred cCCceEEEccChhHHHHHHcc
Q psy15752 43 RNKVPIIVGGTNYYIESLLWT 63 (110)
Q Consensus 43 ~gk~PIlVGGTglY~~all~g 63 (110)
.++.-+|+||||+-=.+++.-
T Consensus 5 ~~~~vlVtGatG~iG~~l~~~ 25 (319)
T 4b8w_A 5 QSMRILVTGGSGLVGKAIQKV 25 (319)
T ss_dssp CCCEEEEETCSSHHHHHHHHH
T ss_pred cCCeEEEECCCcHHHHHHHHH
Confidence 456678899999864454443
No 92
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus}
Probab=22.27 E-value=76 Score=21.41 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCceEEEccChhHHHHH
Q psy15752 35 NKIDDILQRNKVPIIVGGTNYYIESL 60 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTglY~~al 60 (110)
++++.+.+.++--.++||..+|=++|
T Consensus 81 ~~l~~l~~~~~~i~viGG~~l~~~~l 106 (164)
T 1zdr_A 81 EVKQWIASRADEVFIIGGAELFRATM 106 (164)
T ss_dssp HHHHHHHTCCSCEEEEECHHHHHHHG
T ss_pred HHHHHHhcCCCeEEEECcHHHHHHHH
Confidence 55555544466666779988886654
No 93
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=21.97 E-value=1.3e+02 Score=21.25 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=24.5
Q ss_pred CCCHHHHHHHH-HHHHHHHh----cCCceEEEccChhHHHHHHcc
Q psy15752 24 KETLQSYSGRI-NKIDDILQ----RNKVPIIVGGTNYYIESLLWT 63 (110)
Q Consensus 24 ~ysv~~f~~~a-~~i~~i~~----~gk~PIlVGGTglY~~all~g 63 (110)
--|..+|...+ ..++++.+ .++..+|| +-|.-+++++.-
T Consensus 157 gEs~~~~~~Rv~~~l~~l~~~~~~~~~~vlvV-sHg~~i~~ll~~ 200 (257)
T 3gp3_A 157 TECLKDTVARVLPLWNESIAPAVKAGKQVLIA-AHGNSLRALIKY 200 (257)
T ss_dssp SCCHHHHHHHHHHHHHHTHHHHHHTTCCEEEE-ECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhcCCCEEEEE-eCcHHHHHHHHH
Confidence 45788898888 88888753 45554455 344445555533
No 94
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=21.95 E-value=75 Score=21.90 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=15.1
Q ss_pred HHHHHHHh--cCCceEEEccChh
Q psy15752 35 NKIDDILQ--RNKVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~--~gk~PIlVGGTgl 55 (110)
+.+++..+ +-.+-|..||||.
T Consensus 58 ~~l~~~~~~~~~DlVittGG~g~ 80 (178)
T 2pbq_A 58 KTLIELADEKGCSLILTTGGTGP 80 (178)
T ss_dssp HHHHHHHHTSCCSEEEEESCCSS
T ss_pred HHHHHHHhcCCCCEEEECCCCCC
Confidence 56666665 5678888899953
No 95
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=21.84 E-value=34 Score=23.57 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=14.9
Q ss_pred cCCceEEEccChhHHHHHHcc
Q psy15752 43 RNKVPIIVGGTNYYIESLLWT 63 (110)
Q Consensus 43 ~gk~PIlVGGTglY~~all~g 63 (110)
+|+.-+|+||||+-=.++...
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~ 40 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSE 40 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHH
T ss_pred CCCeEEEECCCChHHHHHHHH
Confidence 478889999999765555544
No 96
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=21.81 E-value=78 Score=21.45 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=15.3
Q ss_pred HHHHHHHh--cCCceEEEccChh
Q psy15752 35 NKIDDILQ--RNKVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~--~gk~PIlVGGTgl 55 (110)
+.+++..+ +-.+-|..||||.
T Consensus 52 ~~l~~~~~~~~~DlVittGG~g~ 74 (164)
T 2is8_A 52 KVLRLWADREGLDLILTNGGTGL 74 (164)
T ss_dssp HHHHHHHHTSCCSEEEEESCCSS
T ss_pred HHHHHHHhcCCCCEEEEcCCCCC
Confidence 66666666 4668888999964
No 97
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*
Probab=21.73 E-value=99 Score=20.57 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=24.6
Q ss_pred cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEE
Q psy15752 5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIV 50 (110)
Q Consensus 5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlV 50 (110)
.++.|+-+.+ .| ....+...+...+ +.|++..++..-||+|
T Consensus 79 ~gi~~~~ip~----~D-~~~~~~~~~~~~~~~~i~~~~~~~~~~VlV 120 (183)
T 3f81_A 79 SGITYLGIKA----ND-TQEFNLSAYFERAADFIDQALAQKNGRVLV 120 (183)
T ss_dssp TTCEEEECCC----CC-STTSCGGGGHHHHHHHHHHHHHSTTCCEEE
T ss_pred CCCEEEEEEc----CC-CCcccHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 3455665655 23 3445665666677 8888888773335555
No 98
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=21.42 E-value=2e+02 Score=21.98 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=42.4
Q ss_pred HHHHHH-HHHHHHHhcCC-ceEEEccChh---HHHHHHccc-C-CCCC--chhhhcCHHHHHHHHHhc
Q psy15752 29 SYSGRI-NKIDDILQRNK-VPIIVGGTNY---YIESLLWTI-L-LDNK--TNINEQGEFTLYDMDKIR 87 (110)
Q Consensus 29 ~f~~~a-~~i~~i~~~gk-~PIlVGGTgl---Y~~all~g~-~-~p~~--~~~~~~g~~~l~~~L~~~ 87 (110)
.|...| +.+..+.+|.. +=|+|-.|.| ..+-||+|+ . +|.. -...+.|.+.++++.++.
T Consensus 159 ~WLs~a~k~L~~i~sr~~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kiGKesCFerI~~R 226 (274)
T 3geb_A 159 LWLTHSLKALNLINSRPNCVNVLVTTTQLIPALAKVLLYGLGSVFPIENIYSATKTGKESCFERIMQR 226 (274)
T ss_dssp SHHHHHHHHHHHHHHSTTEEEEEEESSCHHHHHHHHHHTTCTTTSCGGGEEETTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCceeEEEEecCchHHHHHHHHHhhcccceecccccchhhcCHHHHHHHHHHH
Confidence 477778 88888887744 6677776665 578888998 3 4632 234678999999998763
No 99
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=21.30 E-value=32 Score=21.94 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=17.6
Q ss_pred CHHHHHHHHHhcChHHHhcc
Q psy15752 76 GEFTLYDMDKIRNLEHGRDV 95 (110)
Q Consensus 76 g~~~l~~~L~~~DP~~a~~I 95 (110)
=.+.||-+...++|+.|.||
T Consensus 26 LGE~LyplV~~~~p~~AgKI 45 (85)
T 2dyd_A 26 LGENLYPLVDQLEHDQAAKV 45 (85)
T ss_dssp HHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHHHHHHhCccccchh
Confidence 35789999999999999987
No 100
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=21.28 E-value=84 Score=23.59 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=14.0
Q ss_pred HHHHHHHhcC---CceEEEccChh
Q psy15752 35 NKIDDILQRN---KVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~~g---k~PIlVGGTgl 55 (110)
+.++.+.++| ++||+|||..+
T Consensus 202 ~~i~~L~~~g~~~~i~vivGG~~~ 225 (262)
T 1xrs_B 202 HLIELLEAEGLRDRFVLLCGGPRI 225 (262)
T ss_dssp HHHHHHHHTTCGGGSEEEEECTTC
T ss_pred HHHHHHHhcCCCCCCEEEEECCcC
Confidence 4455555544 48999999753
No 101
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A
Probab=21.24 E-value=33 Score=23.34 Aligned_cols=58 Identities=5% Similarity=-0.083 Sum_probs=33.4
Q ss_pred ccChhHHHHHHcccCCC-CCc--hhhhcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752 51 GGTNYYIESLLWTILLD-NKT--NINEQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE 108 (110)
Q Consensus 51 GGTglY~~all~g~~~p-~~~--~~~~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~ 108 (110)
|=-+||+-.++++++.- ... .......+..++.=++.||+....|+..+-.++++.++
T Consensus 13 ~~LNLfIAVIlenF~~~~~~~~~~l~~~dl~~F~~~W~~fDP~aTg~I~~~~L~~ll~~L~ 73 (129)
T 2kav_A 13 GLVPRGSHMASENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFIEFAKLSDFADALD 73 (129)
T ss_dssp -----------CCSCCTTSSCSCSSCHHHHHHHHHHHHHHCTTCCCEECGGGHHHHHHHSC
T ss_pred chhheeeeeeeccHHHHHHhhccCCCHHHHHHHHHHHHhcCCCCceEEeHHHHHHHHHhCC
Confidence 45678998888887432 211 12344456777888999999999999999888888765
No 102
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=21.09 E-value=35 Score=25.12 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=14.1
Q ss_pred cCCceEEEccChhH----HHHHHc
Q psy15752 43 RNKVPIIVGGTNYY----IESLLW 62 (110)
Q Consensus 43 ~gk~PIlVGGTglY----~~all~ 62 (110)
+++..+|+||||+- ++.|+.
T Consensus 9 ~~~~vlVTGatG~IG~~l~~~L~~ 32 (362)
T 3sxp_A 9 ENQTILITGGAGFVGSNLAFHFQE 32 (362)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHh
Confidence 46778899999984 444544
No 103
>3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified}
Probab=21.08 E-value=1.3e+02 Score=20.04 Aligned_cols=31 Identities=16% Similarity=-0.047 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccC
Q psy15752 21 CWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGT 53 (110)
Q Consensus 21 ~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGT 53 (110)
+...|++.++..++ ..++.+ ..+..+|+|-|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS 104 (309)
T 3u1t_A 73 PDIEYRLQDHVAYMDGFIDAL--GLDDMVLVIHD 104 (309)
T ss_dssp CSSCCCHHHHHHHHHHHHHHH--TCCSEEEEEEE
T ss_pred CCcccCHHHHHHHHHHHHHHc--CCCceEEEEeC
Confidence 34479999999998 877766 23456788755
No 104
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=21.07 E-value=93 Score=25.11 Aligned_cols=20 Identities=30% Similarity=0.647 Sum_probs=15.9
Q ss_pred cCCceEEEc-cChhHHHHHHc
Q psy15752 43 RNKVPIIVG-GTNYYIESLLW 62 (110)
Q Consensus 43 ~gk~PIlVG-GTglY~~all~ 62 (110)
-||.||+|| +.||..+.++.
T Consensus 222 lGk~~v~v~d~pGfi~Nril~ 242 (460)
T 3k6j_A 222 IKKLPVLVGNCKSFVFNRLLH 242 (460)
T ss_dssp TTCEEEEESSCCHHHHHHHHH
T ss_pred hCCEEEEEecccHHHHHHHHH
Confidence 499999998 46888777763
No 105
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=21.06 E-value=36 Score=24.43 Aligned_cols=21 Identities=5% Similarity=0.276 Sum_probs=14.8
Q ss_pred cCCceEEEccChhHHHHHHcc
Q psy15752 43 RNKVPIIVGGTNYYIESLLWT 63 (110)
Q Consensus 43 ~gk~PIlVGGTglY~~all~g 63 (110)
.++.-+|+||||+-=.+++.-
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~ 30 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQ 30 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHH
Confidence 467788999999865555443
No 106
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=21.05 E-value=1e+02 Score=24.36 Aligned_cols=47 Identities=19% Similarity=0.106 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCceEEEccChhHHHHHHcccCCCCCc---hhhhcCHHHHHHHHHhcC
Q psy15752 35 NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT---NINEQGEFTLYDMDKIRN 88 (110)
Q Consensus 35 ~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p~~~---~~~~~g~~~l~~~L~~~D 88 (110)
+++-+.+..|-+||+.||.... .+ +|+.+ ..+-...++|-+.|+.+|
T Consensus 249 EK~~~al~~g~VPI~~G~~~~~------~~-~Pp~SfI~~~dF~s~~~La~yL~~L~ 298 (371)
T 2nzw_A 249 EKIIDAYFSHTIPIYWGSPSVA------KD-FNPKSFVNVHDFKNFDEAIDYIKYLH 298 (371)
T ss_dssp THHHHHHHTTCEEEEESCTTGG------GT-SCGGGSEEGGGSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEEEECCCchh------hh-CCCCceEEcccCCCHHHHHHHHHHHh
Confidence 4455667789999999998431 21 24322 223445667777766554
No 107
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Probab=20.97 E-value=86 Score=23.47 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=13.6
Q ss_pred HHHHHHHh-------cCCceEEEccC
Q psy15752 35 NKIDDILQ-------RNKVPIIVGGT 53 (110)
Q Consensus 35 ~~i~~i~~-------~gk~PIlVGGT 53 (110)
+.|++.++ ..+++|+.|||
T Consensus 187 ~~IR~~l~~~~~~~~a~~vrIlYGGS 212 (252)
T 2btm_A 187 GHIRSVVSRLFGPEAAEAIRIQYGGS 212 (252)
T ss_dssp HHHHHHHHHHHCHHHHTTSEEEEESS
T ss_pred HHHHHHHHHhcCccccCceeEEEcCC
Confidence 55555543 35799999998
No 108
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=20.80 E-value=1.7e+02 Score=19.32 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=26.0
Q ss_pred cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEE
Q psy15752 5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIV 50 (110)
Q Consensus 5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlV 50 (110)
.++.|+-+.+ .| ....+...+...+ +.|++..++|+ +|+|
T Consensus 52 ~~~~~~~ipi----~D-~~~~~l~~~~~~~~~fI~~~~~~~~-~VlV 92 (161)
T 3emu_A 52 DQCDILRLDI----VS-EEGHQLYDSIPNAIKFIIRSIQRKE-GVLI 92 (161)
T ss_dssp TTSEEEEECC----CC-SSTTHHHHHHHHHHHHHHHHHHTTC-EEEE
T ss_pred CCCEEEEEeC----cC-CCCCcHHHHHHHHHHHHHHHHhcCC-eEEE
Confidence 3456666666 33 4555677777777 99988877764 4555
No 109
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=20.70 E-value=1.1e+02 Score=23.61 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=27.8
Q ss_pred CHHHHHHHH-HHHHHHHhc-CCceEEEccChhHHHHHHc
Q psy15752 26 TLQSYSGRI-NKIDDILQR-NKVPIIVGGTNYYIESLLW 62 (110)
Q Consensus 26 sv~~f~~~a-~~i~~i~~~-gk~PIlVGGTglY~~all~ 62 (110)
....|.+.+ +.+.+.+.. +-.+||++|.|++-+-+..
T Consensus 172 ~~~~f~~~Va~~l~~~~~~~~~~~lIlAGpg~~k~~f~~ 210 (358)
T 3agj_B 172 EVEKYVDRAAKRIVEEAARHRSPIAVIAGPGQLKTSVAE 210 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEEEEEESSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHH
Confidence 345788887 778777644 4579999999998877754
No 110
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=20.61 E-value=64 Score=23.80 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=13.4
Q ss_pred HHHHHHHhcC-CceEEEcc
Q psy15752 35 NKIDDILQRN-KVPIIVGG 52 (110)
Q Consensus 35 ~~i~~i~~~g-k~PIlVGG 52 (110)
+.++.+.+.- .+|++|||
T Consensus 171 ~~i~~i~~~~~~~Pv~vGg 189 (240)
T 1viz_A 171 EAVKKTKAVLETSTLFYGG 189 (240)
T ss_dssp HHHHHHHHTCSSSEEEEES
T ss_pred HHHHHHHHhcCCCCEEEEe
Confidence 4556666666 89999997
No 111
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=20.48 E-value=37 Score=24.42 Aligned_cols=17 Identities=24% Similarity=0.083 Sum_probs=12.2
Q ss_pred CCceEEEccChhHHHHH
Q psy15752 44 NKVPIIVGGTNYYIESL 60 (110)
Q Consensus 44 gk~PIlVGGTglY~~al 60 (110)
++.-+|+||||+-=.++
T Consensus 3 ~~~vlVtGatG~iG~~l 19 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYL 19 (345)
T ss_dssp CCEEEEETTTSHHHHHH
T ss_pred CCEEEEECCCChHHHHH
Confidence 56778999999854333
No 112
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=20.48 E-value=35 Score=24.78 Aligned_cols=19 Identities=5% Similarity=0.197 Sum_probs=11.8
Q ss_pred cCCceEEEccChhHHHHHH
Q psy15752 43 RNKVPIIVGGTNYYIESLL 61 (110)
Q Consensus 43 ~gk~PIlVGGTglY~~all 61 (110)
+++.-+|+||||+-=.+++
T Consensus 18 ~~~~vlVtGatG~iG~~l~ 36 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVV 36 (347)
T ss_dssp ---CEEEETTTSHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHH
Confidence 5677889999997544444
No 113
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=20.40 E-value=1.1e+02 Score=22.39 Aligned_cols=40 Identities=10% Similarity=0.238 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHH-HHHHHHHhc------CCceEEEccC----hhHHHHHHc
Q psy15752 23 EKETLQSYSGRI-NKIDDILQR------NKVPIIVGGT----NYYIESLLW 62 (110)
Q Consensus 23 e~ysv~~f~~~a-~~i~~i~~~------gk~PIlVGGT----glY~~all~ 62 (110)
.+||..+|.... +++..++.. +.+-||+|-+ +-..+.|..
T Consensus 5 ~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 5 VNFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 678999999988 888888753 3345667733 356676654
No 114
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=20.33 E-value=1.2e+02 Score=23.59 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=24.1
Q ss_pred HHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHc
Q psy15752 28 QSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLW 62 (110)
Q Consensus 28 ~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~ 62 (110)
..|.+.+ +.+.+. +-..||+||.|++-+-+.+
T Consensus 170 ~~F~~~V~e~~~~~---~v~~iIlaGPg~~K~~f~~ 202 (352)
T 3oby_A 170 KEFFGEVAAKLESF---DFKYLIVAGPGFAKNDFLD 202 (352)
T ss_dssp CCHHHHHHHHHHHH---CCSEEEEECSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CCCEEEEECCHHHHHHHHH
Confidence 3577776 777666 5568999999998777664
No 115
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=20.30 E-value=1.7e+02 Score=18.83 Aligned_cols=65 Identities=8% Similarity=-0.109 Sum_probs=28.2
Q ss_pred CCccceecccCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEccChhHHHHHHcccCCCCCchhhhcCHHHHHHHHH
Q psy15752 6 LEGHFVVDFMRSWLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDK 85 (110)
Q Consensus 6 ~vpHhli~~v~~~~d~~e~ysv~~f~~~a~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p~~~~~~~~g~~~l~~~L~ 85 (110)
+||++++-= +-+..|+.+-.+. ....|-|+|-|.=--+-++.- +||.-...+...+-.+|.+|+
T Consensus 12 ~~Py~lL~P------VLek~tp~QL~~I---------E~~nP~L~~dTdeLWk~~c~r-dF~~~~p~e~esWRelY~rl~ 75 (97)
T 4hfx_A 12 GVPYSVLEP------VLERCTPDQLYRI---------EEYNHVLIEETDQLWKVHCHR-DFKEERPEEYESWREMYLRLQ 75 (97)
T ss_dssp --------C------CGGGCCHHHHHHH---------HTC------CCHHHHHHHC-----CCSCCCSSSCHHHHHHHHH
T ss_pred CCcHHHHHH------HHccCCHHHHHHH---------HHhCcccchhhHHHHHHHHHh-HCcccCCCCCCCHHHHHHHHH
Confidence 456666533 2455666554432 345689999997555555533 556444455667888998886
Q ss_pred h
Q psy15752 86 I 86 (110)
Q Consensus 86 ~ 86 (110)
+
T Consensus 76 ~ 76 (97)
T 4hfx_A 76 D 76 (97)
T ss_dssp H
T ss_pred H
Confidence 5
No 116
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=20.28 E-value=88 Score=21.41 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=14.9
Q ss_pred HHHHHHHhc--CCceEEEccChh
Q psy15752 35 NKIDDILQR--NKVPIIVGGTNY 55 (110)
Q Consensus 35 ~~i~~i~~~--gk~PIlVGGTgl 55 (110)
+.+++..++ -.+-|..||||.
T Consensus 59 ~~l~~a~~~~~~DlVittGG~g~ 81 (172)
T 1mkz_A 59 AQVSAWIASDDVQVVLITGGTGL 81 (172)
T ss_dssp HHHHHHHHSSSCCEEEEESCCSS
T ss_pred HHHHHHHhcCCCCEEEeCCCCCC
Confidence 666666665 567888899953
Done!