RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15752
(110 letters)
>gnl|CDD|215399 PLN02748, PLN02748, tRNA dimethylallyltransferase.
Length = 468
Score = 47.2 bits (112), Expect = 2e-07
Identities = 19/32 (59%), Positives = 27/32 (84%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDN 68
I++IL RN +P+IVGGTNYYI++L+ LLD+
Sbjct: 104 IEEILSRNGLPVIVGGTNYYIQALVSPFLLDD 135
>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase;
Reviewed.
Length = 307
Score = 45.9 bits (110), Expect = 5e-07
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 36 KIDDILQRNKVPIIVGGTNYYIESLL 61
I DIL R K+PI+VGGT YI++LL
Sbjct: 85 AIADILARGKLPILVGGTGLYIKALL 110
>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 44.9 bits (107), Expect = 1e-06
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 34 INKIDDILQRNKVPIIVGGTNYYIESLL 61
+ IDDIL R K+PI+VGGT Y+++LL
Sbjct: 82 LAAIDDILARGKLPILVGGTGLYLKALL 109
>gnl|CDD|216659 pfam01715, IPPT, IPP transferase. This is a family of IPP
transferases EC:2.5.1.8 also known as tRNA
delta(2)-isopentenylpyrophosphate transferase. These
enzymes modify both cytoplasmic and mitochondrial tRNAs
at A(37) to give isopentenyl A(37).
Length = 253
Score = 43.5 bits (103), Expect = 3e-06
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 35 NKIDDILQRNKVPIIVGGTNYYIESLL 61
I +I R K+P++VGGT Y ++LL
Sbjct: 47 EAIAEIRARGKIPLLVGGTGLYFKALL 73
>gnl|CDD|213512 TIGR00174, miaA, tRNA dimethylallyltransferase. Alternate names
include delta(2)-isopentenylpyrophosphate transferase,
IPP transferase, 2-methylthio-N6-isopentyladenosine tRNA
modification enzyme. Catalyzes the first step in the
modification of an adenosine near the anticodon to
2-methylthio-N6-isopentyladenosine. Understanding of
substrate specificity has changed [Protein synthesis,
tRNA and rRNA base modification].
Length = 287
Score = 40.4 bits (95), Expect = 4e-05
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 9 HFVVDFMRSWLDCWEKETLQSY-SGRINKIDDILQRNKVPIIVGGTNYYIESLL 61
H ++D LD E + + + +N I DI R K+P++VGGT Y+++LL
Sbjct: 56 HHLIDI----LDPSESYSAADFQTQALNAIADITARGKIPLLVGGTGLYLKALL 105
>gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase.
Length = 334
Score = 37.1 bits (86), Expect = 7e-04
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 35 NKIDDILQRNKVPIIVGGTNYYIESLL 61
I +I R K+PI+ GG+N +I +LL
Sbjct: 124 LSISEITSRQKLPIVAGGSNSFIHALL 150
>gnl|CDD|215451 PLN02840, PLN02840, tRNA dimethylallyltransferase.
Length = 421
Score = 31.7 bits (72), Expect = 0.058
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 38 DDILQRNKVPIIVGGTNYYIESLLWTI 64
DIL R +VPI+ GGT Y L W I
Sbjct: 104 QDILNRGRVPIVAGGTGLY---LRWYI 127
>gnl|CDD|173191 PRK14729, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase;
Provisional.
Length = 300
Score = 29.4 bits (66), Expect = 0.31
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 9 HFVVDFMRSWLDCWEKETLQSYSGRINKI-DDILQRNKVPIIVGGTNYYIESL 60
H +VDF L+ ++ L + KI ++ Q+ K+PI VGG+ +Y + L
Sbjct: 60 HHLVDF----LEPIKEYNLGIFYKEALKIIKELRQQKKIPIFVGGSAFYFKHL 108
>gnl|CDD|225548 COG3002, COG3002, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 880
Score = 28.7 bits (64), Expect = 0.55
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 2/103 (1%)
Query: 5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTI 64
++ F ++ L Y R I+ Q +P + N + L
Sbjct: 71 EIDEPFAAAELKQLLASHMYMIPSDYHLRW--INKQKQLADLPQALAEQNSDLVEKLLIE 128
Query: 65 LLDNKTNINEQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWT 107
T+ +E + +LEHG + + Q+ KW+
Sbjct: 129 ASQQPTDPSENWPLLCDTVSSRIDLEHGEALNDAVNHQIIKWS 171
>gnl|CDD|131219 TIGR02164, torA, trimethylamine-N-oxide reductase TorA. This very
narrowly defined family represents TorA, part of a
family of related molybdoenzymes that include biotin
sulfoxide reductases, dimethyl sulfoxide reductases, and
at least two different subfamilies of
trimethylamine-N-oxide reductases. A single enzyme from
the larger family may have more than one activity. TorA
typically is located in the periplasm, has a Tat
(twin-arginine translocation)-dependent signal sequence,
and is encoded in a torCAD operon.
Length = 822
Score = 28.3 bits (63), Expect = 0.88
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 46 VPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEHG 92
+P ++G T Y + W ++L+N I L+ D ++NL+ G
Sbjct: 188 LPYVLGSTEVYAQGTSWPLILENSDTI------VLWANDPVKNLQVG 228
>gnl|CDD|111162 pfam02238, COX7a, Cytochrome c oxidase subunit VIIa. Cytochrome
c oxidase, a 13 sub-unit complex, is the terminal
oxidase in the mitochondrial electron transport chain.
This family is composed of the heart and liver isoforms
of cytochrome c oxidase subunit VIIa.
Length = 56
Score = 26.6 bits (59), Expect = 0.94
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 38 DDILQRNKVPIIVGGTNYYIESLLW 62
DD L R +P+ +GGT Y++ L
Sbjct: 26 DDKLYRVTMPLTLGGTAYFLIGLGI 50
>gnl|CDD|224980 COG2069, CdhD, CO dehydrogenase/acetyl-CoA synthase delta subunit
(corrinoid Fe-S protein) [Energy production and
conversion].
Length = 403
Score = 27.9 bits (62), Expect = 1.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 37 IDDILQRNKVPIIVGGT 53
++D+LQ VPII+GG+
Sbjct: 191 LEDVLQAVDVPIIIGGS 207
>gnl|CDD|185387 PRK15490, PRK15490, Vi polysaccharide biosynthesis protein TviE;
Provisional.
Length = 578
Score = 27.4 bits (60), Expect = 1.6
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 24 KETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTILL 66
++ +Y G+INKI D+L+R + I GTN I ++ IL
Sbjct: 105 QKKYNNYLGKINKICDLLERLEGKAIPVGTNTCIIAMKHAILF 147
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 27.1 bits (61), Expect = 2.0
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 31 SGRINKIDD-----ILQRNKVPIIVGGTNYY---IESLL 61
+G + KID+ I+ R K II GG N Y +E +
Sbjct: 381 TGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEI 419
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 26.8 bits (60), Expect = 2.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 30 YSGRINKIDD-----ILQRNKVPIIVGGTNYY---IESLL 61
++G + ++D+ I+ R K IVGG N Y +E +L
Sbjct: 395 HTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVL 434
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 26.5 bits (59), Expect = 2.8
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 44 NKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEHGRDVLEQQRMQV 103
NKVP+++G T+ E LL+ + + + ++ + L G L + +
Sbjct: 302 NKVPLLIGVTSD--EGLLFLAYVLPDPTELSELLNEDF-LELLPELLPGAPELSRIADAL 358
Query: 104 TKW 106
+
Sbjct: 359 KEE 361
>gnl|CDD|232948 TIGR00381, cdhD, CO dehydrogenase/acetyl-CoA synthase, delta
subunit. This is the small subunit of a heterodimer
which catalyzes the reaction CO + H2O + Acceptor = CO2 +
Reduced acceptor and is involved in the synthesis of
acetyl-CoA from CO2 and H2 [Energy metabolism,
Chemoautotrophy].
Length = 389
Score = 26.4 bits (58), Expect = 3.2
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 37 IDDILQRNKVPIIVGGT 53
++D+LQ VPI++GG+
Sbjct: 180 LEDVLQAVDVPIVIGGS 196
>gnl|CDD|162444 TIGR01607, PST-A, Plasmodium subtelomeric family (PST-A). This
model represents a paralogous family of genes in
Plasmodium falciparum and Plasmodium yoelii which are
closely related to various phospholipases and
lysophospholipases of plants as well as generally being
related to the alpha/beta-fold superfamily of
hydrolases. These genes are preferentially located in
the subtelomeric regions of the chromosomes of both P.
falciparum and P. yoelii.
Length = 332
Score = 25.9 bits (57), Expect = 5.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 63 TILLDNKTNINEQGEFTLYDMDKIRNLEHG 92
T+ NK +I+ + TL DMD + +E G
Sbjct: 289 TVSFYNKLSISNKELHTLEDMDHVITIEPG 318
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 25.8 bits (57), Expect = 6.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 2 FLSRLEGHFVVDFMRSWLDCWEKETL 27
+L R+EG F D L W++E L
Sbjct: 163 YLCRMEGWFAADADTISLKSWDQEEL 188
>gnl|CDD|234146 TIGR03211, catechol_2_3, catechol 2,3 dioxygenase. Members of this
family all are enzymes active as catechol 2,3
dioxygenase (1.13.11.2), although some members have
highly significant activity on catechol derivatives such
as 3-methylcatechol, 3-chlorocatechol, and
4-chlorocatechol (see Mars, et al.). This enzyme is also
called metapyrocatechase, as it performs a meta-cleavage
(an extradiol ring cleavage), in contrast to the
ortho-cleavage (intradiol ring cleavage)performed by
catechol 1,2-dioxygenase (EC 1.13.11.1), also called
pyrocatechase [Energy metabolism, Other].
Length = 303
Score = 25.3 bits (56), Expect = 6.9
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 9/36 (25%)
Query: 18 WLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGT 53
+LD WE + K D++ +N V I +G T
Sbjct: 214 FLDSWED---------VLKAADVMSKNDVSIDIGPT 240
>gnl|CDD|237909 PRK15102, PRK15102, trimethylamine N-oxide reductase I catalytic
subunit; Provisional.
Length = 825
Score = 25.4 bits (56), Expect = 7.4
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 47 PIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEHG 92
P ++G T Y + W ++L+N I L+ D ++NL+ G
Sbjct: 192 PYVLGSTEVYEQGTSWPLILENSKTI------VLWGSDPVKNLQVG 231
>gnl|CDD|215266 PLN02481, PLN02481, Omega-hydroxypalmitate O-feruloyl transferase.
Length = 436
Score = 25.0 bits (55), Expect = 9.0
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 13 DFMRSWLDCWE 23
+MRS +D +E
Sbjct: 347 GYMRSAIDYFE 357
>gnl|CDD|235478 PRK05457, PRK05457, heat shock protein HtpX; Provisional.
Length = 284
Score = 25.1 bits (56), Expect = 9.9
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 1 MFLSRLEGHFVVDFMRS 17
+FLSR+ V F+
Sbjct: 165 IFLSRIIAQIVDRFVSG 181
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.422
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,735,641
Number of extensions: 487391
Number of successful extensions: 575
Number of sequences better than 10.0: 1
Number of HSP's gapped: 575
Number of HSP's successfully gapped: 42
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)