RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15752
(110 letters)
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 55.0 bits (133), Expect = 2e-10
Identities = 15/29 (51%), Positives = 24/29 (82%)
Query: 34 INKIDDILQRNKVPIIVGGTNYYIESLLW 62
+N I+DI +R K+PI+VGGT+YY+++L
Sbjct: 81 MNAIEDIHRRGKIPIVVGGTHYYLQTLFN 109
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP;
2.37A {Humulus lupulus}
Length = 339
Score = 52.2 bits (125), Expect = 2e-09
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 35 NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRN-----L 89
+ +I R K+P++VGG+N +I +LL + + E+G ++ + + +
Sbjct: 121 KAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWV 180
Query: 90 EHGRDVL 96
+ VL
Sbjct: 181 DVSVKVL 187
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 46.0 bits (110), Expect = 3e-07
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 34 INKIDDILQRNKVPIIVGGTNYYIESLL 61
I DI +R KVPII GGT YI+SLL
Sbjct: 86 EKYIKDITRRGKVPIIAGGTGLYIQSLL 113
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 45.6 bits (109), Expect = 4e-07
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 35 NKIDDILQRNKVPIIVGGTNYYIESLL 61
I +I +R ++P +VGGT Y+ +++
Sbjct: 83 PLITEIHERGRLPFLVGGTGLYVNAVI 109
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 45.2 bits (108), Expect = 5e-07
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 37 IDDILQRNKVPIIVGGTNYYIESLL 61
+ R ++P++VGGT Y ++LL
Sbjct: 87 MAKATARGRIPLLVGGTMLYYKALL 111
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 45.2 bits (108), Expect = 6e-07
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 36 KIDDILQRNKVPIIVGGTNYYIESLL 61
++ DI ++P++VGGT Y ++LL
Sbjct: 91 EMADITAAGRIPLLVGGTMLYFKALL 116
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis;
HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB:
2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 43.7 bits (103), Expect = 2e-06
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 34 INKIDDILQRNKVPIIVGGTNYYIESL 60
+ D + + I+ GG+ + +
Sbjct: 80 LIFEVDWRKSEEGLILEGGSISLLNCM 106
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding
channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
Length = 674
Score = 27.6 bits (62), Expect = 0.98
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 2/19 (10%)
Query: 14 FMRSWLDCWEKETLQSYSG 32
+ +W WE+E L S
Sbjct: 492 MLENW--VWEQEPLLRMSR 508
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel,
hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P
Length = 678
Score = 27.2 bits (61), Expect = 1.3
Identities = 4/19 (21%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 14 FMRSWLDCWEKETLQSYSG 32
+ +W W+ ++L+ S
Sbjct: 508 MLENW--VWDVDSLRKLSK 524
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 26.5 bits (59), Expect = 1.8
Identities = 5/31 (16%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 44 NKVPIIVGGTNYYIESLLWTILLDNKTNINE 74
+P+I+G T+ E ++ + +++
Sbjct: 323 KHIPLIIGFTDA--ECEIFRRQFEQIDIVSK 351
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 1.9
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 21/74 (28%)
Query: 2 FLSRLEGHFVVDFMRSWLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLL 61
F+ + V D +S L ++E ID I+ V GT L
Sbjct: 29 FVDNFDCKDVQDMPKSILS--KEE-----------IDHII---MSKDAVSGTLR----LF 68
Query: 62 WTILLDNKTNINEQ 75
W LL + + ++
Sbjct: 69 W-TLLSKQEEMVQK 81
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 26.6 bits (59), Expect = 2.1
Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 4/61 (6%)
Query: 42 QRNKVPIIVGGTN----YYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEHGRDVLE 97
V I G + ++ + I + + E + + + L + E
Sbjct: 306 NAADVDYIAGTNDMDGHLFVGMDVPAINSNKQDVTEEDFYKLVSGLTVTKGLRGAQATYE 365
Query: 98 Q 98
Sbjct: 366 V 366
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter
actinomycetemcomitans} SCOP: c.1.8.6
Length = 367
Score = 25.5 bits (56), Expect = 3.8
Identities = 1/30 (3%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 20 DCWEKETLQSYSGRINKIDDILQRNKVPII 49
+Y+ +++ + ++ +
Sbjct: 188 SVESNHEFITYANKLSYF--LEKKGLKTRM 215
>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase,
neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia
coli}
Length = 680
Score = 25.6 bits (57), Expect = 4.2
Identities = 2/19 (10%), Positives = 4/19 (21%), Gaps = 2/19 (10%)
Query: 14 FMRSWLDCWEKETLQSYSG 32
W + Y+
Sbjct: 503 INEHW--ATHPQVFARYAR 519
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin
repeat, chromodomain, aromatic CAGE, signal recognit
particle, protein targeting; 3.18A {Arabidopsis
thaliana} PDB: 1x3q_A 2hug_A
Length = 244
Score = 25.3 bits (56), Expect = 4.4
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 11/56 (19%)
Query: 51 GGTNYYIESL-----LWTILLDNKTNINEQGEFTLY------DMDKIRNLEHGRDV 95
G Y IE W ++ + E + D + L RDV
Sbjct: 15 GAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDRDV 70
>3i0z_A Putative tagatose-6-phosphate ketose/aldose isome; NP_344614.1,
putative putative tagatose-6-phosphate ketose/A
isomerase; HET: MSE; 1.70A {Streptococcus pneumoniae
TIGR4}
Length = 389
Score = 25.3 bits (56), Expect = 4.9
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 20 DCWEKETLQSYSGRINKIDDILQ-------RNKVPIIVG-GTNYYI 57
D W +E + Y + +I LQ KV I+ G GT+ Y+
Sbjct: 27 DVW-REAFEFYQAKREEIAAFLQEIADKHDYIKV-ILTGAGTSAYV 70
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A
{Pseudomonas aeruginosa}
Length = 319
Score = 25.0 bits (55), Expect = 5.5
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 37 IDDILQRNKVPIIVGG 52
D IL +P+ +GG
Sbjct: 112 YDRILGHGILPLTLGG 127
>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein
structure initia structural genomics of pathogenic
protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP:
c.42.1.1
Length = 316
Score = 24.9 bits (55), Expect = 6.1
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 37 IDDILQRNKVPIIVGG 52
+ +L R P ++GG
Sbjct: 105 VFTVLARGAFPFVIGG 120
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; 2.70A {Thermoplasma volcanium GSS1}
Length = 313
Score = 24.8 bits (55), Expect = 6.2
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 37 IDDILQRNKVPIIVGG 52
+ ++ K+PI++GG
Sbjct: 107 VSAVMSDGKIPIMLGG 122
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 25.3 bits (55), Expect = 6.6
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 15/84 (17%)
Query: 22 WEKETLQSYSGRINKIDDILQRNKVP------IIVGG--TNYYIESLLWT----ILLDNK 69
W+ Y + LQRN +P +VG N + ++ W ++ D+
Sbjct: 1133 WDPRAHSVYLKYRKLLPKQLQRNTIPDGYGDGALVGSVLINPFAKNRGWIRYVPVITDHT 1192
Query: 70 TNI--NEQGEFTLYDMDKIRNLEH 91
+ E G + LYD+ E
Sbjct: 1193 RDRERAELGSY-LYDLFSRCLSES 1215
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus
radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A
Length = 305
Score = 24.8 bits (55), Expect = 7.2
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 37 IDDILQRNKVPIIVGG 52
+ R +VP+ +GG
Sbjct: 104 ARQVRGRCRVPVFLGG 119
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex;
HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A*
3sl0_A*
Length = 413
Score = 24.4 bits (53), Expect = 9.6
Identities = 3/18 (16%), Positives = 10/18 (55%)
Query: 35 NKIDDILQRNKVPIIVGG 52
+ + + L++ + +GG
Sbjct: 176 DTMSNELRKKNFVLNIGG 193
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.422
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,729,630
Number of extensions: 88123
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 36
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)