RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15752
         (110 letters)



>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
           NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
          Length = 561

 Score = 26.4 bits (58), Expect = 0.72
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 16/61 (26%)

Query: 11  VVDFMRSWLDCWEKETLQSYS----------GRINKIDDILQRNKVPIIVGGTN--YYIE 58
           ++  M + L  W + T  ++S           R  K+D      K   +   T+  +Y  
Sbjct: 394 ILTKMNAHLKQWTERTGFAFSLYSTPAENLCYRFCKLD----TEKYGSVKDVTDKGWYTN 449

Query: 59  S 59
           S
Sbjct: 450 S 450


>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36,
           VPS36 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 129

 Score = 23.7 bits (51), Expect = 5.2
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 64  ILLDNKTNINEQGEFTLYDMDKIRNLEHGRDVLEQQRM 101
           +L  N+T + +Q    +YD ++    + G  +L   R+
Sbjct: 8   LLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRL 45


>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 268

 Score = 23.8 bits (51), Expect = 5.8
 Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 9/78 (11%)

Query: 35  NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEHGRD 94
            K  + L+  K  I   G+      L+  ++L+N   +         +M          +
Sbjct: 169 LKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVT-------IEMQPDPEKATQEE 221

Query: 95  VLEQQRMQ--VTKWTEKE 110
           V E+  ++      TE++
Sbjct: 222 VEEKNILEKVKAAMTEED 239


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0574    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 436,269
Number of extensions: 18004
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 12
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)