BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15764
(469 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRY|A Chain A, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2BRY|B Chain B, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2C4C|A Chain A, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
pdb|2C4C|B Chain B, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
Length = 497
Score = 335 bits (859), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 172/296 (58%), Positives = 216/296 (72%), Gaps = 2/296 (0%)
Query: 6 GWRAVVSP-PDHPVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTEAE 64
GWRA + P P ++ YEF+VL+ A G + EGF +E RGKLAI ITANF+N +T E
Sbjct: 201 GWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTIREMRGKLAIGITANFVNGRTVEE 260
Query: 65 ARVEEISGVAFIFNQKFFKDLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGVILND 124
+V EISGVA I+NQKFF+ L TGIDLENIVYYKD+THYFVMTAKKQ LL GV+ D
Sbjct: 261 TQVPEISGVARIYNQKFFQSLLKATGIDLENIVYYKDETHYFVMTAKKQCLLRLGVLRQD 320
Query: 125 FADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAA 184
++T +LL + N+ EAL+ +AR AADF+T L LEFA + G+ DVA FDFTSM A
Sbjct: 321 LSETDQLLGKANVVPEALQRFARAAADFATHGKLGKLEFAQDARGRPDVAAFDFTSMMRA 380
Query: 185 ENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIE 244
E++ R E++G +LL+ LVGD L+EPFWP G+G ARGFL++ DA W ++ WA G P+E
Sbjct: 381 ESSARVQEKHGARLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAWMVKRWAEGA-GPLE 439
Query: 245 VLAERESIYRILGQTTPENLHRDHASYSLDPTTRYPNLNQRTVLPVQVKGLYDTDD 300
VLAERES+Y++L QT+PEN+HR+ A Y LDP TRYPNLN R V P QV+ LYD D
Sbjct: 440 VLAERESLYQLLSQTSPENMHRNVAQYGLDPATRYPNLNLRAVTPNQVQDLYDMMD 495
>pdb|2BRA|A Chain A, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
pdb|2BRA|B Chain B, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
Length = 484
Score = 333 bits (855), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 171/293 (58%), Positives = 215/293 (73%), Gaps = 2/293 (0%)
Query: 6 GWRAVVSP-PDHPVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTEAE 64
GWRA + P P ++ YEF+VL+ A G + EGF +E RGKLAI ITANF+N +T E
Sbjct: 193 GWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTIREMRGKLAIGITANFVNGRTVEE 252
Query: 65 ARVEEISGVAFIFNQKFFKDLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGVILND 124
+V EISGVA I+NQKFF+ L TGIDLENIVYYKD+THYFVMTAKKQ LL GV+ D
Sbjct: 253 TQVPEISGVARIYNQKFFQSLLKATGIDLENIVYYKDETHYFVMTAKKQCLLRLGVLRQD 312
Query: 125 FADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAA 184
++T +LL + N+ EAL+ +AR AADF+T L LEFA + G+ DVA FDFTSM A
Sbjct: 313 LSETDQLLGKANVVPEALQRFARAAADFATHGKLGKLEFAQDARGRPDVAAFDFTSMMRA 372
Query: 185 ENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIE 244
E++ R E++G +LL+ LVGD L+EPFWP G+G ARGFL++ DA W ++ WA G P+E
Sbjct: 373 ESSARVQEKHGARLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAWMVKRWAEGA-GPLE 431
Query: 245 VLAERESIYRILGQTTPENLHRDHASYSLDPTTRYPNLNQRTVLPVQVKGLYD 297
VLAERES+Y++L QT+PEN+HR+ A Y LDP TRYPNLN R V P QV+ LYD
Sbjct: 432 VLAERESLYQLLSQTSPENMHRNVAQYGLDPATRYPNLNLRAVTPNQVQDLYD 484
>pdb|3F3K|A Chain A, The Structure Of Uncharacterized Protein Ykr043c From
Saccharomyces Cerevisiae.
pdb|3F3K|B Chain B, The Structure Of Uncharacterized Protein Ykr043c From
Saccharomyces Cerevisiae
Length = 265
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 44 FRGKLAIAITANFINKKTEAEARVEEISGVAFIFNQKFFKDLYAETGI--------DLEN 95
R AIA N +++K ++E R +I A ++F ++ G+ +++N
Sbjct: 146 LRLSRAIARIQN-LHRKHQSEGRASDIXVFAHGHALRYFAAIWFGLGVQKKCETIEEIQN 204
Query: 96 IVYYKDDTHYFVMTAKKQSLLDKGVILNDFADTARL-LSQDNIDKEALK 143
+ Y DDT +V + L+D L D L + NID+ AL+
Sbjct: 205 VKSYDDDTVPYVKLESYRHLVDNPCFLLDAGGIGVLSYAHHNIDEPALE 253
>pdb|3LG2|A Chain A, A Ykr043c FRUCTOSE-1,6-Bisphosphate Product Complex
Following Ligand Soaking
pdb|3LG2|B Chain B, A Ykr043c FRUCTOSE-1,6-Bisphosphate Product Complex
Following Ligand Soaking
pdb|3LG2|C Chain C, A Ykr043c FRUCTOSE-1,6-Bisphosphate Product Complex
Following Ligand Soaking
pdb|3LG2|D Chain D, A Ykr043c FRUCTOSE-1,6-Bisphosphate Product Complex
Following Ligand Soaking
Length = 292
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 49 AIAITANFINKKTEAEARVEEISGVAFIFNQKFFKDLYAETGI--------DLENIVYYK 100
AIA N +++K ++E R +I A ++F ++ G+ +++N+ Y
Sbjct: 172 AIARIQN-LHRKHQSEGRASDIXVFAHGHALRYFAAIWFGLGVQKKCETIEEIQNVKSYD 230
Query: 101 DDTHYFVMTAKKQSLLDKGVILNDFADTARL-LSQDNIDKEALK 143
DDT +V + L+D L D L + NID+ AL+
Sbjct: 231 DDTVPYVKLESYRHLVDNPCFLLDAGGIGVLSYAHHNIDEPALE 274
>pdb|3OI7|A Chain A, Structure Of The Structure Of The H13a Mutant Of Ykr043c
In Complex With Sedoheptulose-1,7-Bisphosphate
pdb|3OI7|B Chain B, Structure Of The Structure Of The H13a Mutant Of Ykr043c
In Complex With Sedoheptulose-1,7-Bisphosphate
pdb|3OI7|C Chain C, Structure Of The Structure Of The H13a Mutant Of Ykr043c
In Complex With Sedoheptulose-1,7-Bisphosphate
pdb|3OI7|D Chain D, Structure Of The Structure Of The H13a Mutant Of Ykr043c
In Complex With Sedoheptulose-1,7-Bisphosphate
Length = 292
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 49 AIAITANFINKKTEAEARVEEISGVAFIFNQKFFKDLYAETGI--------DLENIVYYK 100
AIA N +++K ++E R +I A ++F ++ G+ +++N+ Y
Sbjct: 172 AIARIQN-LHRKHQSEGRASDIXVFAHGHALRYFAAIWFGLGVQKKCETIEEIQNVKSYD 230
Query: 101 DDTHYFVMTAKKQSLLDKGVILNDFADTARL-LSQDNIDKEALK 143
DDT +V + L+D L D L + NID+ AL+
Sbjct: 231 DDTVPYVKLESYRHLVDNPCFLLDAGGIGVLSYAHHNIDEPALE 274
>pdb|3LL4|A Chain A, Structure Of The H13a Mutant Of Ykr043c In Complex With
Fructose-1,6- Bisphosphate
pdb|3LL4|B Chain B, Structure Of The H13a Mutant Of Ykr043c In Complex With
Fructose-1,6- Bisphosphate
Length = 292
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 49 AIAITANFINKKTEAEARVEEISGVAFIFNQKFFKDLYAETGI--------DLENIVYYK 100
AIA N +++K ++E R +I A ++F ++ G+ +++N+ Y
Sbjct: 172 AIARIQN-LHRKHQSEGRASDIMVFAHGHALRYFAAIWFGLGVQKKCETIEEIQNVKSYD 230
Query: 101 DDTHYFVMTAKKQSLLDKGVILNDFADTARL-LSQDNIDKEALK 143
DDT +V + L+D L D L + NID+ AL+
Sbjct: 231 DDTVPYVKLESYRHLVDNPCFLLDAGGIGVLSYAHHNIDEPALE 274
>pdb|3OJY|C Chain C, Crystal Structure Of Human Complement Component C8
Length = 182
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 181 MYAAENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDA-CWAIR 233
+ A +ACRFL+ GH+ T + + P G+ A +D CW +R
Sbjct: 33 LVAVGSACRFLQEQGHRAEATTLHVA------PQGTAMAVSTFRKLDGICWQVR 80
>pdb|2RD7|C Chain C, Human Complement Membrane Attack Proteins Share A Common
Fold With Bacterial Cytolysins
Length = 184
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 181 MYAAENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDA-CWAIR 233
+ A +ACRFL+ GH+ T + + P G+ A +D CW +R
Sbjct: 35 LVAVGSACRFLQEQGHRAEATTLHVA------PQGTAMAVSTFRKLDGICWQVR 82
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 50 IAITANFINKKTEAEARVEEISGVAFIFNQKFFKD 84
+ I N +N K EA AR+E+I+G F++ D
Sbjct: 32 VVIADNLVNSKREAIARIEKITGKTPAFHETDVSD 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,353,134
Number of Sequences: 62578
Number of extensions: 536898
Number of successful extensions: 1223
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1218
Number of HSP's gapped (non-prelim): 10
length of query: 469
length of database: 14,973,337
effective HSP length: 102
effective length of query: 367
effective length of database: 8,590,381
effective search space: 3152669827
effective search space used: 3152669827
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)