Query psy15764
Match_columns 469
No_of_seqs 95 out of 97
Neff 3.0
Searched_HMMs 46136
Date Fri Aug 16 20:50:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1700|consensus 99.5 3.9E-15 8.5E-20 139.4 0.8 145 17-163 54-199 (200)
2 PF01494 FAD_binding_3: FAD bi 93.6 0.027 5.9E-07 52.4 1.0 51 200-251 293-343 (356)
3 PRK08244 hypothetical protein; 89.3 5.2 0.00011 41.4 12.0 47 200-247 274-320 (493)
4 PRK06183 mhpA 3-(3-hydroxyphen 89.1 3.9 8.4E-05 43.1 11.1 47 200-247 288-334 (538)
5 COG0654 UbiH 2-polyprenyl-6-me 77.5 25 0.00053 35.5 10.7 67 171-247 260-326 (387)
6 COG1663 LpxK Tetraacyldisaccha 65.8 6.5 0.00014 41.1 3.7 75 22-105 191-271 (336)
7 KOG2614|consensus 55.9 11 0.00025 40.5 3.5 42 20-62 149-194 (420)
8 PRK06475 salicylate hydroxylas 48.7 14 0.00031 37.0 2.8 35 20-54 153-190 (400)
9 PF09784 L31: Mitochondrial ri 46.5 11 0.00024 33.8 1.4 22 430-451 75-96 (103)
10 TIGR00682 lpxK tetraacyldisacc 45.4 15 0.00033 37.4 2.4 35 67-105 216-251 (311)
11 cd04657 Piwi_ago-like Piwi_ago 41.8 63 0.0014 33.9 6.3 90 6-102 183-279 (426)
12 PRK07045 putative monooxygenas 38.1 19 0.00042 35.7 1.8 49 200-248 287-335 (388)
13 PF02171 Piwi: Piwi domain; I 36.0 52 0.0011 32.0 4.3 75 22-102 75-157 (302)
14 cd04658 Piwi_piwi-like_Euk Piw 35.7 67 0.0014 33.7 5.3 86 4-102 214-307 (448)
15 PRK06617 2-octaprenyl-6-methox 35.4 62 0.0013 32.4 4.8 52 172-232 256-307 (374)
16 cd05530 POLBc_B1 DNA polymeras 31.6 17 0.00037 38.0 0.3 15 172-186 28-42 (372)
17 cd02826 Piwi-like Piwi-like: P 30.2 95 0.002 32.1 5.3 75 22-102 170-252 (393)
18 TIGR03882 cyclo_dehyd_2 bacter 30.0 1.4E+02 0.003 28.4 6.0 53 169-221 135-192 (193)
19 PRK05868 hypothetical protein; 29.0 31 0.00067 34.7 1.6 50 200-252 284-333 (372)
20 cd05537 POLBc_Pol_II DNA polym 27.8 22 0.00048 37.0 0.3 14 172-185 18-31 (371)
21 cd05531 POLBc_B2 DNA polymeras 27.3 22 0.00049 36.7 0.3 14 172-185 20-33 (352)
22 cd05532 POLBc_alpha DNA polyme 26.5 24 0.00051 36.9 0.3 14 172-185 23-37 (400)
23 PRK07588 hypothetical protein; 25.9 63 0.0014 32.2 3.1 30 3-36 131-160 (391)
24 cd00145 POLBc DNA polymerase t 25.3 26 0.00057 35.4 0.4 14 172-185 18-31 (323)
25 PF02606 LpxK: Tetraacyldisacc 25.0 86 0.0019 32.2 3.9 79 22-104 178-264 (326)
26 PLN02629 powdery mildew resist 24.3 52 0.0011 35.1 2.3 45 162-208 81-131 (387)
27 cd04696 Nudix_Hydrolase_37 Mem 24.0 79 0.0017 26.5 2.9 20 78-97 42-61 (125)
28 cd01739 LSm11_C The eukaryotic 23.7 23 0.00051 29.6 -0.3 17 216-232 22-38 (66)
29 PRK07364 2-octaprenyl-6-methox 21.9 75 0.0016 31.7 2.8 35 1-36 149-183 (415)
30 TIGR03219 salicylate_mono sali 21.6 84 0.0018 31.7 3.0 49 200-248 302-350 (414)
31 TIGR01658 EYA-cons_domain eyes 21.3 46 0.00099 34.3 1.1 29 189-217 221-259 (274)
32 cd05536 POLBc_B3 DNA polymeras 21.3 35 0.00077 35.3 0.4 14 172-185 19-32 (371)
33 cd05533 POLBc_delta DNA polyme 21.2 36 0.00079 35.6 0.4 13 173-185 20-32 (393)
34 PRK09902 hypothetical protein; 20.6 4.9E+02 0.011 25.9 8.0 133 32-182 27-178 (216)
No 1
>KOG1700|consensus
Probab=99.49 E-value=3.9e-15 Score=139.38 Aligned_cols=145 Identities=19% Similarity=0.001 Sum_probs=138.0
Q ss_pred CCCccee-eEEEecCCCcccccCccceeeccceeeeeEEEecCCCcccccccccccchhHHhhHHHHHHhhhhcCCCccc
Q psy15764 17 PVSQYEF-NVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTEAEARVEEISGVAFIFNQKFFKDLYAETGIDLEN 95 (469)
Q Consensus 17 pvs~yEF-dVlIgAdG~rn~l~GF~rkEfRGKLAIgITaNFiN~~T~aEakVeEISGVA~IfNQ~FF~~L~~~tGIDLEN 95 (469)
.+.--++ ++.+.+.++.+..+||+. +++..+++++.|++|.++.++++|.++++++.+++|++|..+.+.+|+++++
T Consensus 54 ~~~yc~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~c~~c~k~vy~~Ek~~~~~~~~ 131 (200)
T KOG1700|consen 54 GVPYCKNCHVAQFGPKGGGFGKGFQK--AGGLGKDGKSLNESKPNQSAKFQVFAGEKEKCARCQKTVYPLEKVTGNGLEF 131 (200)
T ss_pred cccccccchHhhhCcccccccccccc--cCCCCcccccccccccccchhHHhhhccccccccccceeeehHHHhhhhhhh
Confidence 3333344 999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceeeeeccccccccccccccccccchhhhccccCCCHHHHHHHHHHHhcccCCCCCCCccc
Q psy15764 96 IVYYKDDTHYFVMTAKKQSLLDKGVILNDFADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEF 163 (469)
Q Consensus 96 IVYYKddTHYFVMTAKKqSLL~kGVi~qD~~d~~~LLs~~NV~~~aL~~yAreAAdFst~~~Lp~ldF 163 (469)
++||.+++||++|+++|+....+||+..++.....++.+.|+++...+.+.++++++++..++|++++
T Consensus 132 hk~cfrc~~~~~~ls~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (200)
T KOG1700|consen 132 HKSCFRCTHCGKKLSPKNYAALEGVLYCKHHFAQLFKGKGNYNEGFGARENKEAAAAATAEPLPKLQP 199 (200)
T ss_pred hhhheeecccccccCCcchhhcCCccccchhhheeecCCCcccccchhhhhhhhhhhhcccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998876
No 2
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.64 E-value=0.027 Score=52.37 Aligned_cols=51 Identities=18% Similarity=0.098 Sum_probs=38.5
Q ss_pred EEeccCccCCCcccCCccccccccccccHHHHHHHHhcCCCCchhhhHhHHH
Q psy15764 200 MTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLAERES 251 (469)
Q Consensus 200 v~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~~~~G~~~plevLAEREs 251 (469)
|.||||.-.----..|-|+.-++.+|...+|.+..+..|. .+.+.|+.-|.
T Consensus 293 v~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~-~~~~~l~~Y~~ 343 (356)
T PF01494_consen 293 VLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGE-ASEEALKAYEQ 343 (356)
T ss_dssp EEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTS-SHHHHHHHHHH
T ss_pred eEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCC-cHHHHHHHHHH
Confidence 6699999875444589999999999999999999998774 45667665443
No 3
>PRK08244 hypothetical protein; Provisional
Probab=89.32 E-value=5.2 Score=41.44 Aligned_cols=47 Identities=26% Similarity=0.387 Sum_probs=37.5
Q ss_pred EEeccCccCCCcccCCccccccccccccHHHHHHHHhcCCCCchhhhH
Q psy15764 200 MTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLA 247 (469)
Q Consensus 200 v~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~~~~G~~~plevLA 247 (469)
|.|+||.-+--.=-.|-|..-|+-.|...+|-+..-..|. .+..+|.
T Consensus 274 v~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~-~~~~lL~ 320 (493)
T PRK08244 274 IFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGW-APDWLLD 320 (493)
T ss_pred EEEeecceeccCCccccccccchhhHHHHHHHHHHHHcCC-CCchhhh
Confidence 7899999887666679999999999999999998765553 3445554
No 4
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=89.13 E-value=3.9 Score=43.06 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=36.1
Q ss_pred EEeccCccCCCcccCCccccccccccccHHHHHHHHhcCCCCchhhhH
Q psy15764 200 MTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLA 247 (469)
Q Consensus 200 v~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~~~~G~~~plevLA 247 (469)
|.|+||.-+--.=-.|-|++-|+-.|...+|-+.....|. .+.++|+
T Consensus 288 v~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~-~~~~~L~ 334 (538)
T PRK06183 288 VLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGR-AGDALLD 334 (538)
T ss_pred EEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCC-CcHHHHH
Confidence 8899998665433389999999999999999998766663 4455664
No 5
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=77.48 E-value=25 Score=35.46 Aligned_cols=67 Identities=18% Similarity=0.140 Sum_probs=48.4
Q ss_pred CccccccccchhhhhhhhhhhhhcCceEEEEeccCccCCCcccCCccccccccccccHHHHHHHHhcCCCCchhhhH
Q psy15764 171 SDVAMFDFTSMYAAENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLA 247 (469)
Q Consensus 171 pDVamFDFTSm~aaenAa~v~er~G~kLLv~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~~~~G~~~plevLA 247 (469)
..+..|.|.++.+..+.. |. |+|+||.-+---=-.|-|..-|+-.|+-.||.+..-..+. .+.++|.
T Consensus 260 ~~~~~~pl~~~~a~~~~~------~R---v~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~-~~~~~L~ 326 (387)
T COG0654 260 SSRSAFPLSLRVAERYRR------GR---VVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPG-ADAAALA 326 (387)
T ss_pred cccccccccchhhhheec------Cc---EEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcC-ccHHHHH
Confidence 356677777766666533 44 9999999876555578999999999999999999887631 2355554
No 6
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=65.83 E-value=6.5 Score=41.14 Aligned_cols=75 Identities=19% Similarity=0.327 Sum_probs=47.4
Q ss_pred eeeEEEecCCCcccccCccceeeccceeeeeEEEecCCC---cc---cccccccccchhHHhhHHHHHHhhhhcCCCccc
Q psy15764 22 EFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKK---TE---AEARVEEISGVAFIFNQKFFKDLYAETGIDLEN 95 (469)
Q Consensus 22 EFdVlIgAdG~rn~l~GF~rkEfRGKLAIgITaNFiN~~---T~---aEakVeEISGVA~IfNQ~FF~~L~~~tGIDLEN 95 (469)
..|+||--+|...--+ +--+++.+...||+... .. ...+|--++|+| ..|+||.-| ++.||.+..
T Consensus 191 ~ad~ii~~g~~~~~~~------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~v~afaGIg--~P~rFf~tL-~~~g~~~~~ 261 (336)
T COG1663 191 SADAIITNGGGSRADP------IPMRLAPGHAPNLVAPGERSDVADLKGKRVVAFAGIG--NPQRFFATL-RNLGIQVVE 261 (336)
T ss_pred cCcEEEecCCCccccc------hhhhhcccccceeeccceecchhhcCCceEEEEEecC--ChHHHHHHH-HHcCcceee
Confidence 4677776665552111 22345556666666511 11 124477788887 348999766 699999999
Q ss_pred cccccCCcee
Q psy15764 96 IVYYKDDTHY 105 (469)
Q Consensus 96 IVYYKddTHY 105 (469)
-.+|+|--||
T Consensus 262 ~~~FpDH~~f 271 (336)
T COG1663 262 TLAFPDHYDF 271 (336)
T ss_pred eecCCchhhc
Confidence 9999985554
No 7
>KOG2614|consensus
Probab=55.91 E-value=11 Score=40.51 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=31.3
Q ss_pred cceeeEEEecCCCccccc---Cccceeecccee-eeeEEEecCCCcc
Q psy15764 20 QYEFNVLVGADGKRNTLE---GFKRKEFRGKLA-IAITANFINKKTE 62 (469)
Q Consensus 20 ~yEFdVlIgAdG~rn~l~---GF~rkEfRGKLA-IgITaNFiN~~T~ 62 (469)
.++-|+|||+||-.+.+. ||+-..|.|..| +|++ .|.|.+-.
T Consensus 149 ~~~~dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~-~~~~~~~~ 194 (420)
T KOG2614|consen 149 TVKGDLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLG-FIPNGIPF 194 (420)
T ss_pred EEEeeEEEEcCchHHHHHHHhcccCCcceeEEEEeeee-eccCCCCc
Confidence 679999999999998883 666566666555 4666 77776544
No 8
>PRK06475 salicylate hydroxylase; Provisional
Probab=48.72 E-value=14 Score=37.01 Aligned_cols=35 Identities=29% Similarity=0.478 Sum_probs=25.1
Q ss_pred cceeeEEEecCCCccccc---CccceeeccceeeeeEE
Q psy15764 20 QYEFNVLVGADGKRNTLE---GFKRKEFRGKLAIAITA 54 (469)
Q Consensus 20 ~yEFdVlIgAdG~rn~l~---GF~rkEfRGKLAIgITa 54 (469)
.+++|+||||||.++++- |+....+.|..++..+.
T Consensus 153 ~~~adlvIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~ 190 (400)
T PRK06475 153 TVSAAYLIACDGVWSMLRAKAGFSKARFSGHIAWRTTL 190 (400)
T ss_pred EEecCEEEECCCccHhHHhhcCCCCCCcCCceEEEEEe
Confidence 468899999999999872 55555566666655443
No 9
>PF09784 L31: Mitochondrial ribosomal protein L31; InterPro: IPR016340 This group represents a predicted mitochondrial ribosomal protein L31, fungal type [, ].
Probab=46.53 E-value=11 Score=33.79 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=17.0
Q ss_pred hhcCCCCCCCCccCCCcChHHH
Q psy15764 430 NKYGKSTKPHSERVPKWSKQQF 451 (469)
Q Consensus 430 ~k~~~~~~~~~ervpkwsreqf 451 (469)
+|+.+.-+|+.-+||||.|--|
T Consensus 75 ~k~~k~YRK~IHkvPKWTk~s~ 96 (103)
T PF09784_consen 75 DKKSKGYRKGIHKVPKWTKVSQ 96 (103)
T ss_pred ccCcCCCcCCcccCCCcccccc
Confidence 4555777899999999987543
No 10
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=45.37 E-value=15 Score=37.37 Aligned_cols=35 Identities=31% Similarity=0.593 Sum_probs=27.6
Q ss_pred cccccchhHHhh-HHHHHHhhhhcCCCccccccccCCcee
Q psy15764 67 VEEISGVAFIFN-QKFFKDLYAETGIDLENIVYYKDDTHY 105 (469)
Q Consensus 67 VeEISGVA~IfN-Q~FF~~L~~~tGIDLENIVYYKddTHY 105 (469)
|--++|+| | |+||+.| +..|+++.-...|.|--+|
T Consensus 216 v~a~aGIg---nP~~F~~~L-~~~G~~~~~~~~fpDHh~f 251 (311)
T TIGR00682 216 VGAFSGIG---NPQRFFAML-KNLGIQVKGTYLFPDHQEL 251 (311)
T ss_pred EEEEEECC---ChHHHHHHH-HHcCCccccceECCCCccC
Confidence 66788888 5 7899887 5799999988889876333
No 11
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=41.85 E-value=63 Score=33.85 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=56.3
Q ss_pred cceEeecCCCCCCCcceeeEEEecCCCcccccCccceeeccceeeeeEEEecCCCc-------ccccccccccchhHHhh
Q psy15764 6 GWRAVVSPPDHPVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKT-------EAEARVEEISGVAFIFN 78 (469)
Q Consensus 6 GWrA~v~P~~hpvs~yEFdVlIgAdG~rn~l~GF~rkEfRGKLAIgITaNFiN~~T-------~aEakVeEISGVA~IfN 78 (469)
-|..+..+ .+....+-+.|||+|=......- --...-..|++||.-+.-| .++...|.|..+.-++.
T Consensus 183 n~~v~~~~--~~~~~~~~tmiiG~Dv~H~~~~~----~~~~pSiaa~Vas~d~~~~~y~~~~~~q~~~~e~i~~l~~~~~ 256 (426)
T cd04657 183 NHSLEPDI--RPLLTKEPTMVLGADVTHPSPGD----PAGAPSIAAVVASVDWHLAQYPASVRLQSHRQEIIDDLESMVR 256 (426)
T ss_pred eeeccccc--ccccCCCCEEEEEEeeecCCCCC----CCCCCcEEEEEEecCCcccccceEEEEeCCCcchHHHHHHHHH
Confidence 36554332 22333478899999944433210 0013457788888754333 34566667777776676
Q ss_pred HHHHHHhhhhcCCCccccccccCC
Q psy15764 79 QKFFKDLYAETGIDLENIVYYKDD 102 (469)
Q Consensus 79 Q~FF~~L~~~tGIDLENIVYYKdd 102 (469)
..+- ..++.+|.=.|+||+|+|-
T Consensus 257 ~~l~-~~~~~~~~~P~~IiiyRDG 279 (426)
T cd04657 257 ELLR-AFKKATGKLPERIIYYRDG 279 (426)
T ss_pred HHHH-HHHHHhCCCCceEEEEEcC
Confidence 5553 4577899999999999985
No 12
>PRK07045 putative monooxygenase; Reviewed
Probab=38.07 E-value=19 Score=35.71 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=37.1
Q ss_pred EEeccCccCCCcccCCccccccccccccHHHHHHHHhcCCCCchhhhHh
Q psy15764 200 MTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLAE 248 (469)
Q Consensus 200 v~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~~~~G~~~plevLAE 248 (469)
+.||||+.+-.-=-.|-|+.-|+-.|...||.+.....|.....++|++
T Consensus 287 v~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~ 335 (388)
T PRK07045 287 VVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALER 335 (388)
T ss_pred EEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHH
Confidence 7899999876544478999999999999999998875553234456654
No 13
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=36.01 E-value=52 Score=31.97 Aligned_cols=75 Identities=17% Similarity=0.297 Sum_probs=46.9
Q ss_pred eeeEEEecCCCcccccCccceeeccceeeeeEEEecCCCcc-------cccccccccchhHHhhHHHHHHhhhhcCC-Cc
Q psy15764 22 EFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTE-------AEARVEEISGVAFIFNQKFFKDLYAETGI-DL 93 (469)
Q Consensus 22 EFdVlIgAdG~rn~l~GF~rkEfRGKLAIgITaNFiN~~T~-------aEakVeEISGVA~IfNQ~FF~~L~~~tGI-DL 93 (469)
.-+.|||+|=.+..... -...-.+|++++|-+..+. ++..-+.++.+..++...+ +..++..|. -.
T Consensus 75 ~~~miIGidv~h~~~~~-----~~~~sv~g~~~s~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~L-~~~~~~~~~~~P 148 (302)
T PF02171_consen 75 KNTMIIGIDVSHPSPGS-----DKNPSVVGFVASFDSDGSKYFSSVRFQDSGQEIIDNLEEIIKEAL-KEFKKNNGKWLP 148 (302)
T ss_dssp SEEEEEEEEEEEESSTC-----TCSCEEEEEEEEESTTTCEEEEEEEEECTTCCCHHHHHHHHHHHH-HHHHHTTTT-TT
T ss_pred CceEEEEEEEEecCccc-----CCcceeeEEEEeccCccccccceeEEeccchhhhcchhhHHHHHH-HHHHHHcCCCCC
Confidence 56678998743333221 2245678999999544432 2344455555555555443 445667787 99
Q ss_pred cccccccCC
Q psy15764 94 ENIVYYKDD 102 (469)
Q Consensus 94 ENIVYYKdd 102 (469)
++||+|+|.
T Consensus 149 ~~IiiyRdG 157 (302)
T PF02171_consen 149 ERIIIYRDG 157 (302)
T ss_dssp SEEEEEEES
T ss_pred ceEEEEEcc
Confidence 999999986
No 14
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=35.71 E-value=67 Score=33.66 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=50.1
Q ss_pred cccceEeecCCCCCCCcceeeEEEecCCCcccccCccceeeccceeeeeEEEecCCC-------ccccccccc-ccchhH
Q psy15764 4 KIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKK-------TEAEARVEE-ISGVAF 75 (469)
Q Consensus 4 ~~GWrA~v~P~~hpvs~yEFdVlIgAdG~rn~l~GF~rkEfRGKLAIgITaNFiN~~-------T~aEakVeE-ISGVA~ 75 (469)
..-|.....| ...+-+.|||+|=.+.... .++-.+|++|+.-... ..+....|+ +..+.-
T Consensus 214 G~~w~l~~~~-----~~~~~tmiiGidv~h~~~~-------~~~Si~a~vas~~~~~~~~~~~~~~q~~~~e~~~~~l~~ 281 (448)
T cd04658 214 GIPWTVEIPP-----FILKNTMIVGIDVYHDTIT-------KKKSVVGFVASLNKSITKWFSKYISQVRGQEEIIDSLGK 281 (448)
T ss_pred CcceEeccCC-----CCCCCeEEEEEeeecCCCC-------CCCcEEEEEEEcCCCCceEeeEEEEeCCCceeeHHHHHH
Confidence 3447664432 1235689999996666531 2356678888832211 122333344 444444
Q ss_pred HhhHHHHHHhhhhcCCCccccccccCC
Q psy15764 76 IFNQKFFKDLYAETGIDLENIVYYKDD 102 (469)
Q Consensus 76 IfNQ~FF~~L~~~tGIDLENIVYYKdd 102 (469)
++.+.+ +..++.+|.-.++||+|+|.
T Consensus 282 ~~~~~l-~~y~~~~~~~P~~IiiyRdG 307 (448)
T cd04658 282 SMKKAL-KAYKKENKKLPSRIIIYRDG 307 (448)
T ss_pred HHHHHH-HHHHHHhCCCCceEEEEecC
Confidence 444333 23456789999999999985
No 15
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=35.36 E-value=62 Score=32.36 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=31.6
Q ss_pred ccccccccchhhhhhhhhhhhhcCceEEEEeccCccCCCcccCCccccccccccccHHHHH
Q psy15764 172 DVAMFDFTSMYAAENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAI 232 (469)
Q Consensus 172 DVamFDFTSm~aaenAa~v~er~G~kLLv~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmv 232 (469)
++..|++...++... ..|. |+||||.-+---=-.|-|++-|+-.|.-.++.+
T Consensus 256 ~~~~~~l~~~~~~~~------~~gr---v~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L 307 (374)
T PRK06617 256 EISSFPLKARIANRY------FHNR---IVLIADTAHTVHPLAGQGLNQGIKDIEILSMIV 307 (374)
T ss_pred ceeEEEeeeeeccce------ecCC---EEEEEcccccCCCCccccHHHHHHHHHHHHHHH
Confidence 467777765533222 1232 789999865433237888887777666666554
No 16
>cd05530 POLBc_B1 DNA polymerase type-B B1 subfamily catalytic domain. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some archaeal members also possess multiple family B DNA polymerases (B1, B2 and B3). So far there is no specific function(s) has been assigned for different members of the archaea type B DNA polymerases. Phylogenetic analyses of eubacterial, archaeal, and eukaryotic family B DNA polymerases are support independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases.
Probab=31.60 E-value=17 Score=37.99 Aligned_cols=15 Identities=33% Similarity=0.673 Sum_probs=13.0
Q ss_pred ccccccccchhhhhh
Q psy15764 172 DVAMFDFTSMYAAEN 186 (469)
Q Consensus 172 DVamFDFTSm~aaen 186 (469)
+|+.|||+|||.|-=
T Consensus 28 ~V~~lDF~SLYPSIi 42 (372)
T cd05530 28 NVVVLDFASLYPSII 42 (372)
T ss_pred cEEEEEcccccHHHH
Confidence 599999999998753
No 17
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=30.16 E-value=95 Score=32.12 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=43.5
Q ss_pred eeeEEEecCCCcccccCccceeeccceeeeeEEEecCCCc-------ccccccccccchhHHhhHHHHHHhhhhcCC-Cc
Q psy15764 22 EFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKT-------EAEARVEEISGVAFIFNQKFFKDLYAETGI-DL 93 (469)
Q Consensus 22 EFdVlIgAdG~rn~l~GF~rkEfRGKLAIgITaNFiN~~T-------~aEakVeEISGVA~IfNQ~FF~~L~~~tGI-DL 93 (469)
+-+.|||+|=.+.... ..-.+.-++|++++. |.++ .+..+.+.+..+.-++.. .++..++.+|- -.
T Consensus 170 ~~tmiiGiDv~h~~~~----~~~~~~si~~~vas~-~~~~~~g~~~~~~~~~~~~~~~l~~~~~~-~L~~y~~~~~~~~P 243 (393)
T cd02826 170 KSDIFIGFDVSHPDRR----TVNGGPSAVGFAANL-SNHTFLGGFLYVQPSREVKLQDLGEVIKK-CLDGFKKSTGEGLP 243 (393)
T ss_pred CCEEEEEEEeeCCCCC----CCCCCCcEEEEEeec-CCccccceEEEEecCccchHHHHHHHHHH-HHHHHHHHcCCCCc
Confidence 5689999994444321 011235567888874 2211 112223444555555543 44556678998 99
Q ss_pred cccccccCC
Q psy15764 94 ENIVYYKDD 102 (469)
Q Consensus 94 ENIVYYKdd 102 (469)
++||+|+|-
T Consensus 244 ~~IiiyRDG 252 (393)
T cd02826 244 EKIVIYRDG 252 (393)
T ss_pred ceeEEEecC
Confidence 999999974
No 18
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=30.05 E-value=1.4e+02 Score=28.39 Aligned_cols=53 Identities=25% Similarity=0.334 Sum_probs=35.7
Q ss_pred CCCccccc---cccchhhhhhhhhhhhhcCceEEEEeccC-ccCCC-cccCCcccccc
Q psy15764 169 GQSDVAMF---DFTSMYAAENACRFLERNGHKLLMTLVGD-SLLEP-FWPTGSGCARG 221 (469)
Q Consensus 169 GqpDVamF---DFTSm~aaenAa~v~er~G~kLLv~LVGD-sLlEP-FWP~GtG~aRG 221 (469)
..+|+.+. ||---.=+.--...++++..+|+|...|. .++-| |+|-.|||.+.
T Consensus 135 ~~a~l~vVl~~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~~~~~~gp~~~p~~~~c~~c 192 (193)
T TIGR03882 135 SEADLTVVLTDDYLDPELAAINQRALAAGRPWLLVKPGGVQPWIGPLFKPGKTGCWHC 192 (193)
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHcCCceEEEEeCCceEEECCeecCCCCccccc
Confidence 34556666 77533322233567777788888888765 46788 78999999864
No 19
>PRK05868 hypothetical protein; Validated
Probab=28.97 E-value=31 Score=34.73 Aligned_cols=50 Identities=18% Similarity=0.090 Sum_probs=36.3
Q ss_pred EEeccCccCCCcccCCccccccccccccHHHHHHHHhcCCCCchhhhHhHHHH
Q psy15764 200 MTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLAERESI 252 (469)
Q Consensus 200 v~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~~~~G~~~plevLAEREsi 252 (469)
|+||||.-+-+-=..|-|.+-++..|.-.||.+..- + ....+.|+.=|..
T Consensus 284 v~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~--~-~~~~~al~~ye~~ 333 (372)
T PRK05868 284 VALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA--G-DDYQLGFANYHAE 333 (372)
T ss_pred eeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc--C-CCHHHHHHHHHHH
Confidence 899999988776678888888888888888887542 1 2344566665555
No 20
>cd05537 POLBc_Pol_II DNA polymerase type-II subfamily catalytic domain. Bacteria contain five DNA polymerases (I, II, III, IV and V). DNA polymerase II (Pol II) is a prototype for the B-family of polymerases. The role of Pol II in a variety of cellular activities, such as repair of DNA damaged by UV irradiation or oxidation has been proven by genetic studies. DNA polymerase III is the main enzyme responsible for replication of the bacterial chromosome; however, In vivo studies have also shown that Pol II is able to participate in chromosomal DNA replication with larger role in lagging-strand replication.
Probab=27.81 E-value=22 Score=37.04 Aligned_cols=14 Identities=36% Similarity=0.745 Sum_probs=12.4
Q ss_pred ccccccccchhhhh
Q psy15764 172 DVAMFDFTSMYAAE 185 (469)
Q Consensus 172 DVamFDFTSm~aae 185 (469)
+|+.|||+|||.|-
T Consensus 18 ~V~vlDF~SLYPSI 31 (371)
T cd05537 18 NVLVLDFKSLYPSI 31 (371)
T ss_pred ceEEEEcccccHHH
Confidence 49999999999874
No 21
>cd05531 POLBc_B2 DNA polymerase type-B B2 subfamily catalytic domain. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some archaeal members also possess multiple family B DNA polymerases (B1, B2 and B3). So far there is no specific function(s) has been assigned for different members of the archaea type B DNA polymerases. Phylogenetic analyses of eubacterial, archaeal, and eukaryotic family B DNA polymerases are support independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases.
Probab=27.34 E-value=22 Score=36.66 Aligned_cols=14 Identities=50% Similarity=0.814 Sum_probs=12.4
Q ss_pred ccccccccchhhhh
Q psy15764 172 DVAMFDFTSMYAAE 185 (469)
Q Consensus 172 DVamFDFTSm~aae 185 (469)
+|+.+||+|||.|-
T Consensus 20 ~V~~lDF~SLYPSi 33 (352)
T cd05531 20 NVAQIDFSSMYPSI 33 (352)
T ss_pred ceEEEEccccchHH
Confidence 59999999999874
No 22
>cd05532 POLBc_alpha DNA polymerase type-B alpha subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase (Pol) alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. In most organisms no specific repair role, other than check point control, has been assigned to this enzyme. Pol alpha contains both polymerase and exonuclease domains, but lacks exonuclease activity suggesting that the exonuclease domain may be for structural purposes only.
Probab=26.55 E-value=24 Score=36.93 Aligned_cols=14 Identities=29% Similarity=0.736 Sum_probs=12.2
Q ss_pred c-cccccccchhhhh
Q psy15764 172 D-VAMFDFTSMYAAE 185 (469)
Q Consensus 172 D-VamFDFTSm~aae 185 (469)
+ |+.|||+|||.|-
T Consensus 23 ~~V~~lDF~SLYPSI 37 (400)
T cd05532 23 KFILLLDFNSLYPSI 37 (400)
T ss_pred CceEEEeccccchHH
Confidence 5 9999999999863
No 23
>PRK07588 hypothetical protein; Provisional
Probab=25.86 E-value=63 Score=32.17 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=0.0
Q ss_pred CcccceEeecCCCCCCCcceeeEEEecCCCcccc
Q psy15764 3 EKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 36 (469)
Q Consensus 3 ~~~GWrA~v~P~~hpvs~yEFdVlIgAdG~rn~l 36 (469)
+..||++.+.-. ...++|+||||||.+..+
T Consensus 131 ~~~~v~v~~~~g----~~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 131 HRDGVRVTFERG----TPRDFDLVIGADGLHSHV 160 (391)
T ss_pred CCCeEEEEECCC----CEEEeCEEEECCCCCccc
No 24
>cd00145 POLBc DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA. DNA-directed DNA polymerases are multifunctional with both synthetic (polymerase) and degradative modes (exonucleases) and play roles in the processes of DNA replication, repair, and recombination. DNA-dependent DNA polymerases can be classified in six main groups based upon their phylogenetic relationships with E. coli polymerase I (class A), E. coli polymerase II (class B), E. coli polymerase III (class C), euryarchaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB, and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family B DNA polymerases include E. coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative DNA polymerases (alpha, delta, epsilon, and zeta), and eukaryotic viral and plasmid-borne enzymes. DNA polymerase is
Probab=25.35 E-value=26 Score=35.38 Aligned_cols=14 Identities=36% Similarity=0.755 Sum_probs=12.5
Q ss_pred ccccccccchhhhh
Q psy15764 172 DVAMFDFTSMYAAE 185 (469)
Q Consensus 172 DVamFDFTSm~aae 185 (469)
+|+.+||+|||.|-
T Consensus 18 ~V~~lDf~SLYPSI 31 (323)
T cd00145 18 NVIVLDFKSLYPSI 31 (323)
T ss_pred ceEEeecCCccHHH
Confidence 69999999999874
No 25
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=25.04 E-value=86 Score=32.24 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=46.7
Q ss_pred eeeEEEecCCCcccccC------ccceeeccceeeeeEEEe--cCCCcccccccccccchhHHhhHHHHHHhhhhcCCCc
Q psy15764 22 EFNVLVGADGKRNTLEG------FKRKEFRGKLAIAITANF--INKKTEAEARVEEISGVAFIFNQKFFKDLYAETGIDL 93 (469)
Q Consensus 22 EFdVlIgAdG~rn~l~G------F~rkEfRGKLAIgITaNF--iN~~T~aEakVeEISGVA~IfNQ~FF~~L~~~tGIDL 93 (469)
.-|+||- .|......- +....|...+...-..|+ .+.....+.+|--+||+| -.+.||+.| +..|+..
T Consensus 178 rAD~vi~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~v~a~sGIg--~P~~F~~~L-~~~G~~~ 253 (326)
T PF02606_consen 178 RADAVIV-TGCDASDPAIEKAIRPGKPIFSARLKPEGLRNLNTGSIEPLKGKPVLAFSGIG--NPERFFDTL-ESLGIEV 253 (326)
T ss_pred cccEEEE-cCCCcchhHHHHhhhcCCceEEEEEEecccccccccchhhccCCeeEEEEEcC--ChHHHHHHH-HHcCCeE
Confidence 4677765 333333322 233445555554322222 122335688899999999 237888766 5699988
Q ss_pred cccccccCCce
Q psy15764 94 ENIVYYKDDTH 104 (469)
Q Consensus 94 ENIVYYKddTH 104 (469)
.-...|.|--+
T Consensus 254 ~~~~~f~DHh~ 264 (326)
T PF02606_consen 254 VGTLAFPDHHR 264 (326)
T ss_pred EEeeECCCCCC
Confidence 87777877444
No 26
>PLN02629 powdery mildew resistance 5
Probab=24.34 E-value=52 Score=35.13 Aligned_cols=45 Identities=31% Similarity=0.542 Sum_probs=33.5
Q ss_pred ccccccCCCCccccccc-----cchhhhhhhhhhhhh-cCceEEEEeccCccC
Q psy15764 162 EFAVNHYGQSDVAMFDF-----TSMYAAENACRFLER-NGHKLLMTLVGDSLL 208 (469)
Q Consensus 162 dFA~Nh~GqpDVamFDF-----TSm~aaenAa~v~er-~G~kLLv~LVGDsLl 208 (469)
.|+.--+|.||.....+ .|=...=||+.++++ +|++| +.|||||-
T Consensus 81 ~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl--~FVGDSL~ 131 (387)
T PLN02629 81 EFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTV--MFVGDSLG 131 (387)
T ss_pred ccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeE--EEeccccc
Confidence 36666788888865543 355566788999998 79985 68999984
No 27
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=23.97 E-value=79 Score=26.46 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=16.4
Q ss_pred hHHHHHHhhhhcCCCccccc
Q psy15764 78 NQKFFKDLYAETGIDLENIV 97 (469)
Q Consensus 78 NQ~FF~~L~~~tGIDLENIV 97 (469)
-|..-++++++|||+.+.+.
T Consensus 42 ~~aa~REl~EEtGl~~~~~~ 61 (125)
T cd04696 42 EEALKREFREETGLKLRDIK 61 (125)
T ss_pred HHHHHHHHHHHhCCcccccc
Confidence 46777899999999987664
No 28
>cd01739 LSm11_C The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm11 is an SmD2 - like subunit which binds U7 snRNA along with LSm10 and five other Sm subunits to form a 7-member ring structure. LSm11 and the U7 snRNP of which it is a part are thought to play an important role in histone mRNA 3' processing.
Probab=23.65 E-value=23 Score=29.62 Aligned_cols=17 Identities=35% Similarity=0.900 Sum_probs=14.0
Q ss_pred ccccccccccccHHHHH
Q psy15764 216 SGCARGFLSSMDACWAI 232 (469)
Q Consensus 216 tG~aRGFLsa~DaaWmv 232 (469)
-|++.|||.|||=-|-+
T Consensus 22 rG~~~G~lvAFDK~wNm 38 (66)
T cd01739 22 RGVCSGFLVAFDKFWNM 38 (66)
T ss_pred ccEEEEEEEeeeeehhh
Confidence 47899999999987744
No 29
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=21.94 E-value=75 Score=31.66 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=0.0
Q ss_pred CCCcccceEeecCCCCCCCcceeeEEEecCCCcccc
Q psy15764 1 DEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 36 (469)
Q Consensus 1 ~~~~~GWrA~v~P~~hpvs~yEFdVlIgAdG~rn~l 36 (469)
+.+..++.+.+.-.+... .+++|.||||||.+..+
T Consensus 149 ~~~~~~~~v~~~~~~~~~-~i~adlvIgADG~~S~v 183 (415)
T PRK07364 149 EYQQDAATVTLEIEGKQQ-TLQSKLVVAADGARSPI 183 (415)
T ss_pred EecCCeeEEEEccCCcce-EEeeeEEEEeCCCCchh
No 30
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=21.60 E-value=84 Score=31.74 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=32.1
Q ss_pred EEeccCccCCCcccCCccccccccccccHHHHHHHHhcCCCCchhhhHh
Q psy15764 200 MTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLAE 248 (469)
Q Consensus 200 v~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~~~~G~~~plevLAE 248 (469)
|+|+||.-+-.-=.+|-|++-++..|+=.+|.+.....+.....+.|++
T Consensus 302 v~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~ 350 (414)
T TIGR03219 302 VALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEA 350 (414)
T ss_pred EEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHH
Confidence 8999999886655678888877777766677766532222233344443
No 31
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=21.35 E-value=46 Score=34.31 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=25.3
Q ss_pred hhhhhcCc-eEEEEeccCccCC---------CcccCCcc
Q psy15764 189 RFLERNGH-KLLMTLVGDSLLE---------PFWPTGSG 217 (469)
Q Consensus 189 ~v~er~G~-kLLv~LVGDsLlE---------PFWP~GtG 217 (469)
+|++|.|+ +.-.+.|||+.-| |||+-++.
T Consensus 221 ~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wPFw~I~~h 259 (274)
T TIGR01658 221 WIKERFGHPKVRFCAIGDGWEECTAAQAMNWPFVKIDLH 259 (274)
T ss_pred HHHHHhCCCCceEEEeCCChhHHHHHHhcCCCeEEeecC
Confidence 58899998 9999999999877 99998764
No 32
>cd05536 POLBc_B3 DNA polymerase type-B B3 subfamily catalytic domain. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some members of the archaea also possess multiple family B DNA polymerases (B1, B2 and B3). So far there is no specific function(s) has been assigned for different members of the archaea type B DNA polymerases. Phylogenetic analyses of eubacterial, archaeal, and eukaryotic family B DNA polymerases are support independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases. Structural comparison of the thermostable DNA polymerase type B to its mesostable homolog suggests several adaptations to high temperature such as shorter loops, disulfide bridges, and increasing electrostatic interaction at subdomain interfaces.
Probab=21.27 E-value=35 Score=35.32 Aligned_cols=14 Identities=29% Similarity=0.802 Sum_probs=12.3
Q ss_pred ccccccccchhhhh
Q psy15764 172 DVAMFDFTSMYAAE 185 (469)
Q Consensus 172 DVamFDFTSm~aae 185 (469)
+|+.+||+|||.|-
T Consensus 19 ~V~~lDf~SLYPSi 32 (371)
T cd05536 19 NIVVLDFSSLYPSI 32 (371)
T ss_pred CEEEEEcccccHHH
Confidence 59999999999874
No 33
>cd05533 POLBc_delta DNA polymerase type-B delta subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. Presently, no direct data is available regarding the strand specificity of DNA polymerase during DNA replication in vivo. However, mutation analysis supports the hypothesis that DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand.
Probab=21.23 E-value=36 Score=35.58 Aligned_cols=13 Identities=38% Similarity=0.787 Sum_probs=11.8
Q ss_pred cccccccchhhhh
Q psy15764 173 VAMFDFTSMYAAE 185 (469)
Q Consensus 173 VamFDFTSm~aae 185 (469)
|+.+||+|||.|-
T Consensus 20 V~~lDF~SLYPSI 32 (393)
T cd05533 20 IATLDFASLYPSI 32 (393)
T ss_pred eEEecCCCccHHH
Confidence 8999999999874
No 34
>PRK09902 hypothetical protein; Provisional
Probab=20.65 E-value=4.9e+02 Score=25.86 Aligned_cols=133 Identities=19% Similarity=0.271 Sum_probs=81.2
Q ss_pred CcccccCccceeeccceeeeeEEEecCCCccc-ccccc-cccchhHHhhHHHHHHhhhhcCCCcccccccc---CCcee-
Q psy15764 32 KRNTLEGFKRKEFRGKLAIAITANFINKKTEA-EARVE-EISGVAFIFNQKFFKDLYAETGIDLENIVYYK---DDTHY- 105 (469)
Q Consensus 32 ~rn~l~GF~rkEfRGKLAIgITaNFiN~~T~a-EakVe-EISGVA~IfNQ~FF~~L~~~tGIDLENIVYYK---ddTHY- 105 (469)
+|+.--|..|.++-|+ ..|+-+-+-- ..-.- -+ |.+-+++.-.--..+.+.||..-.+||+. ..-.|
T Consensus 27 ~rgG~SgV~r~~~~g~------~~ylKrq~nhl~~s~r~P~-g~ptf~rE~~~L~~L~~~GvPVP~pvf~~~~k~~~~~r 99 (216)
T PRK09902 27 RRNGMSGVQCVERNGK------KLYVKRMTHHLFHSVRYPF-GRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWR 99 (216)
T ss_pred CCCCcceEEEEEeCCc------EEEEEeccCcccccccCCC-CchHHHHHHHHHHHHHHcCCCCCccceeeeeccCCceE
Confidence 3456678899999999 3677665411 11111 33 66666654443344579999999999885 11122
Q ss_pred -eeeccccccccccccccccccchhhhccccCCC-------HHHHHHHHHHHhcccCCCCCCCccccc-----ccCCCCc
Q psy15764 106 -FVMTAKKQSLLDKGVILNDFADTARLLSQDNID-------KEALKEYARQAADFSTEYNLPHLEFAV-----NHYGQSD 172 (469)
Q Consensus 106 -FVMTAKKqSLL~kGVi~qD~~d~~~LLs~~NV~-------~~aL~~yAreAAdFst~~~Lp~ldFA~-----Nh~GqpD 172 (469)
|.||.+ +.++.+-+.+|....++ +.-|..-|+.++.+=.. ++=+-|+.+ ...|+++
T Consensus 100 A~LVTe~----------L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~-Gv~Hgdly~khIll~~~g~~~ 168 (216)
T PRK09902 100 ALLVTED----------MAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSV-NRQHGCCYVRHIYVKTEGKAE 168 (216)
T ss_pred EEEEEEe----------CCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHC-CCcCCCCCHhheeecCCCCee
Confidence 555542 12333444556555554 67788999999988542 233555554 3356788
Q ss_pred cccccccchh
Q psy15764 173 VAMFDFTSMY 182 (469)
Q Consensus 173 VamFDFTSm~ 182 (469)
|++.||....
T Consensus 169 v~lIDlEk~r 178 (216)
T PRK09902 169 AGFLDLEKSR 178 (216)
T ss_pred EEEEEhhccc
Confidence 9999996543
Done!