Query psy15764
Match_columns 469
No_of_seqs 95 out of 97
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 20:50:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bry_A NEDD9 interacting prote 100.0 9.7E-44 3.3E-48 355.0 13.6 297 5-302 200-497 (497)
2 3ihg_A RDME; flavoenzyme, anth 92.2 0.3 1E-05 48.6 7.6 89 136-247 259-349 (535)
3 2d88_A Protein mical-3; all al 92.0 0.048 1.6E-06 46.7 1.4 22 343-367 41-65 (121)
4 2qa2_A CABE, polyketide oxygen 88.8 1.2 3.9E-05 44.9 8.4 47 200-247 280-326 (499)
5 1wyl_A NEDD9 interacting prote 83.8 0.31 1.1E-05 41.3 1.1 22 343-367 39-63 (116)
6 1bkr_A Spectrin beta chain; fi 81.5 0.28 9.4E-06 41.2 -0.2 22 343-367 35-59 (109)
7 2d87_A Smoothelin splice isofo 81.4 0.38 1.3E-05 41.6 0.7 22 343-367 39-63 (128)
8 1wyq_A Spectrin beta chain, br 79.6 0.4 1.4E-05 41.3 0.2 21 343-366 39-62 (127)
9 2d89_A EHBP1 protein; all alph 79.3 0.39 1.3E-05 40.8 0.1 22 343-367 41-65 (119)
10 1bhd_A Utrophin; calponin homo 73.6 0.37 1.3E-05 41.0 -1.6 23 343-368 40-65 (118)
11 1wku_A Alpha-actinin 3; calpon 47.0 4.8 0.00016 37.9 0.5 23 342-367 171-196 (254)
12 1oww_A FN, fibronectin first t 45.7 3.7 0.00013 35.2 -0.4 19 163-181 79-97 (98)
13 3hoc_A Filamin-A; calponin hom 44.3 5.5 0.00019 38.3 0.5 23 343-368 199-225 (272)
14 4hb9_A Similarities with proba 42.9 8.9 0.00031 35.2 1.6 46 200-247 313-360 (412)
15 3oz2_A Digeranylgeranylglycero 39.8 17 0.00059 32.9 3.0 46 200-248 279-327 (397)
16 2wa7_A Filamin-B; disease muta 37.1 8.4 0.00029 35.8 0.5 23 343-368 172-198 (245)
17 4b7l_A Filamin-B; structural p 36.7 8.6 0.00029 37.9 0.5 23 343-368 169-195 (347)
18 4hb9_A Similarities with proba 35.8 12 0.00042 34.3 1.4 17 20-36 152-168 (412)
19 2xdo_A TETX2 protein; tetracyc 29.1 78 0.0027 29.8 5.7 36 200-235 316-351 (398)
20 1wjo_A T-plastin; CH domain, a 28.8 34 0.0012 29.8 2.9 24 340-366 38-69 (124)
21 3nix_A Flavoprotein/dehydrogen 28.3 29 0.00098 32.5 2.5 37 200-238 290-328 (421)
22 3kq0_A Alpha-1-acid glycoprote 26.9 22 0.00076 30.9 1.4 21 80-100 139-159 (192)
23 3f7p_A Plectin-1; plakin, hemi 26.6 7.9 0.00027 37.8 -1.7 21 343-366 221-244 (296)
24 4ehx_A Tetraacyldisaccharide 4 26.1 30 0.001 33.5 2.3 40 63-105 225-264 (315)
25 1sh5_A Plectin 1, PLTN, PCN; a 25.6 10 0.00035 35.0 -1.0 21 343-366 165-188 (245)
26 2x3n_A Probable FAD-dependent 25.3 35 0.0012 32.0 2.5 47 200-247 288-335 (399)
27 3kkj_A Amine oxidase, flavin-c 25.0 25 0.00086 28.0 1.3 33 200-238 297-329 (336)
28 3atr_A Conserved archaeal prot 23.7 38 0.0013 32.9 2.5 37 200-236 284-320 (453)
29 2yha_A Post-transcriptional ge 23.5 34 0.0012 34.2 2.2 78 22-102 155-245 (388)
30 3fmw_A Oxygenase; mithramycin, 23.3 41 0.0014 34.6 2.7 47 200-247 324-370 (570)
31 2qa1_A PGAE, polyketide oxygen 22.9 37 0.0013 34.0 2.3 47 200-247 279-325 (500)
32 3cgv_A Geranylgeranyl reductas 22.0 55 0.0019 30.1 3.1 45 200-247 279-326 (397)
33 3e1t_A Halogenase; flavoprotei 20.9 50 0.0017 32.8 2.7 47 200-248 298-346 (512)
34 1e5p_A Aphrodisin; lipocalin, 20.5 37 0.0013 28.0 1.5 19 82-100 126-144 (151)
35 3rp8_A Flavoprotein monooxygen 20.5 57 0.002 30.7 2.9 30 3-36 154-183 (407)
36 2vou_A 2,6-dihydroxypyridine h 20.4 57 0.002 30.7 2.9 30 3-36 126-155 (397)
37 1u6f_A Tcubp1, RNA-binding pro 20.1 1.1E+02 0.0037 24.7 4.2 83 135-223 52-139 (139)
38 1aoa_A T-fimbrin; actin-bindin 20.1 28 0.00095 32.8 0.7 26 343-368 200-234 (275)
39 2r0c_A REBC; flavin adenine di 20.1 25 0.00087 35.5 0.5 47 200-247 311-357 (549)
40 1sjj_A Actinin; 3-helix bundle 20.0 25 0.00085 37.3 0.4 21 343-366 153-176 (863)
No 1
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=100.00 E-value=9.7e-44 Score=355.02 Aligned_cols=297 Identities=58% Similarity=0.958 Sum_probs=273.6
Q ss_pred ccceEeecCC-CCCCCcceeeEEEecCCCcccccCccceeeccceeeeeEEEecCCCcccccccccccchhHHhhHHHHH
Q psy15764 5 IGWRAVVSPP-DHPVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTEAEARVEEISGVAFIFNQKFFK 83 (469)
Q Consensus 5 ~GWrA~v~P~-~hpvs~yEFdVlIgAdG~rn~l~GF~rkEfRGKLAIgITaNFiN~~T~aEakVeEISGVA~IfNQ~FF~ 83 (469)
.+|.+.+... +.....+++|.||+|+|.+..+.|+...++.|...++.++.+++..+..+..+++++|++++|||.||.
T Consensus 200 ~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~G~~~~~~~~~f~ 279 (497)
T 2bry_A 200 SGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTIREMRGKLAIGITANFVNGRTVEETQVPEISGVARIYNQKFFQ 279 (497)
T ss_dssp CCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCTTCEEEEEECSCCEEEEEEEECCCCHHHHTSCCBCC----CCSSHHH
T ss_pred CEEEEEEEECCCCCEEEEEcCEEEECCCCCcccccccchhhcCceeEeeeeeeeeeccccccchhhcCceEEecChhhhH
Confidence 4688887543 332335789999999999999999999999999999999999999889999999999999999999999
Q ss_pred HhhhhcCCCccccccccCCceeeeeccccccccccccccccccchhhhccccCCCHHHHHHHHHHHhcccCCCCCCCccc
Q psy15764 84 DLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGVILNDFADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEF 163 (469)
Q Consensus 84 ~L~~~tGIDLENIVYYKddTHYFVMTAKKqSLL~kGVi~qD~~d~~~LLs~~NV~~~aL~~yAreAAdFst~~~Lp~ldF 163 (469)
+++.++|||++||+|+.+++||||||+++++++..||+..+++....|+...|++++.++.|+++.++|++....+.+.|
T Consensus 280 ~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (497)
T 2bry_A 280 SLLKATGIDLENIVYYKDETHYFVMTAKKQCLLRLGVLRQDLSETDQLLGKANVVPEALQRFARAAADFATHGKLGKLEF 359 (497)
T ss_dssp HHHHHHCCCEEEEEEEESSEEEEEEEECHHHHHHTTSBSSCCSSHHHHTSTTTBCHHHHHHHHHHHHHHHTTTTTCSCCB
T ss_pred hHHhhcCCCcccccccCCCeEEEEeccccccccccceeeccccchHhhhhhccCCHHHHHHhhccccccchhhccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred ccccCCCCccccccccchhhhhhhhhhhhhcCceEEEEeccCccCCCcccCCccccccccccccHHHHHHHHhcCCCCch
Q psy15764 164 AVNHYGQSDVAMFDFTSMYAAENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPI 243 (469)
Q Consensus 164 A~Nh~GqpDVamFDFTSm~aaenAa~v~er~G~kLLv~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~~~~G~~~pl 243 (469)
+..+.|.|++.+||+++++.-...+++.++.++.-.+.|+||+.+.||||.|.|++.|+..|++.+|++..|..|. ++.
T Consensus 360 ~~~~~g~~~~~~~~~~~~~~~~~~~r~a~~~~~gRr~~l~Gda~~~~~~p~g~G~n~g~~~a~~l~~~l~~~~~g~-~~~ 438 (497)
T 2bry_A 360 AQDARGRPDVAAFDFTSMMRAESSARVQEKHGARLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAWMVKRWAEGA-GPL 438 (497)
T ss_dssp CBCTTSSBCEEEEECSEEEEESCSEEEEEETTEEEEEEECGGGTBCCCGGGCCHHHHHHHHHHHHHHHHHHHHTTC-CHH
T ss_pred hhhccCCCCCceeeeEEEEecchhhHHHHhcCCcccceEeccccccCcCccccchhhHHHHHHHHHHHHHHHhCCC-Ccc
Confidence 9999999999999999999888889999998887779999999999999999999999999999999999998884 788
Q ss_pred hhhHhHHHHHHHhcCCCCcccccCCCCCCCCCCCCCCCCcccccCCcccccccccCCCc
Q psy15764 244 EVLAERESIYRILGQTTPENLHRDHASYSLDPTTRYPNLNQRTVLPVQVKGLYDTDDPS 302 (469)
Q Consensus 244 evLAEREsiY~lL~qttpenl~kn~~~YtiDP~TRY~nln~~~v~p~qVr~Ly~~~~~~ 302 (469)
++|+||+.+|+.|.|+|+++++|++..|++||.|||||.+..+.+|.+|.+||+..+.+
T Consensus 439 ~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r~~~~~~l~~~~~~~ 497 (497)
T 2bry_A 439 EVLAERESLYQLLSQTSPENMHRNVAQYGLDPATRYPNLNLRAVTPNQVQDLYDMMDKE 497 (497)
T ss_dssp HHHHHHHHHHTTGGGCCTTTSCSCGGGCCSSGGGTSSSCCTTSSCGGGGGGGEEECSCC
T ss_pred chhhhHHHHhhhhhhcCHHHHhhhHHhhcCCCcCcCCCcccccccCCccCccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999998753
No 2
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=92.18 E-value=0.3 Score=48.63 Aligned_cols=89 Identities=18% Similarity=0.279 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCCCcccccccCCCCccccccccchhhhhhhhhhhhhcCceEEEEeccCcc--CCCccc
Q psy15764 136 NIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAAENACRFLERNGHKLLMTLVGDSL--LEPFWP 213 (469)
Q Consensus 136 NV~~~aL~~yAreAAdFst~~~Lp~ldFA~Nh~GqpDVamFDFTSm~aaenAa~v~er~G~kLLv~LVGDsL--lEPFWP 213 (469)
..+.+.+..+.+++.... ..++.+ -.+..|.+.++.+... ++|. |.|+||+- +.||
T Consensus 259 ~~~~e~~~~~l~~~~~~~------~~~~~~-----~~~~~~~~~~~~a~~~------~~gr---v~LvGDAAH~~~P~-- 316 (535)
T 3ihg_A 259 DFTPQRCVELIGLALDAP------EVKPEL-----VDIQGWEMAARIAERW------REGR---VFLAGDAAKVTPPT-- 316 (535)
T ss_dssp GCCHHHHHHHHHHHHTCS------SCCCEE-----EEEEEEEEEEEEESCS------EETT---EEECTTTTEECCST--
T ss_pred cCCHHHHHHHHHHHhCCC------CCceeE-----EEeeEeeeeEEEECcc------ccCC---EEEEecccccCCCc--
Confidence 356778888887765431 112211 1234455544432222 1243 78999985 4566
Q ss_pred CCccccccccccccHHHHHHHHhcCCCCchhhhH
Q psy15764 214 TGSGCARGFLSSMDACWAIRSWAAGILNPIEVLA 247 (469)
Q Consensus 214 ~GtG~aRGFLsa~DaaWmvr~~~~G~~~plevLA 247 (469)
.|-|+.-|+..|...+|.+.....|. .+.++|.
T Consensus 317 ~GqG~n~ai~DA~~La~~La~~l~g~-~~~~lL~ 349 (535)
T 3ihg_A 317 GGMSGNAAVADGFDLAWKLAAVLQGQ-AGAGLLD 349 (535)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTS-SCTTHHH
T ss_pred cCCccccccccHHHHHHHHHHHhcCC-CcHHHHH
Confidence 89999999999999999999987663 4555554
No 3
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=92.04 E-value=0.048 Score=46.71 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.3
Q ss_pred chhhhcc---CCCCccccCCCCcchHHH
Q psy15764 343 SSIRAIT---SPPLSLSCSLDSLHEREV 367 (469)
Q Consensus 343 ~alca~~---~p~l~~~~d~~s~~~~~~ 367 (469)
+|+|||| +|++ |||++|+.++.
T Consensus 41 ~af~aLih~~~P~l---id~~~l~~~~~ 65 (121)
T 2d88_A 41 LALCAIIHRYRPDL---IDFDSLDEQNV 65 (121)
T ss_dssp HHHHHHHHHHCTTT---SCTTTSCTTCH
T ss_pred HHHHHHHHHhCcCc---CCHHHcCccCH
Confidence 7999998 9999 99999987553
No 4
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=88.84 E-value=1.2 Score=44.86 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=35.7
Q ss_pred EEeccCccCCCcccCCccccccccccccHHHHHHHHhcCCCCchhhhH
Q psy15764 200 MTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLA 247 (469)
Q Consensus 200 v~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~~~~G~~~plevLA 247 (469)
|.|+||.-+---=-.|-|++-|+-.|+..+|.+.....|. .+.++|.
T Consensus 280 v~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~-~~~~~L~ 326 (499)
T 2qa2_A 280 VLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAAVVSGR-APAGLLD 326 (499)
T ss_dssp EEECGGGTEEECCCSSCHHHHHHHHHHHHHHHHHHHHTTS-SCTHHHH
T ss_pred EEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCC-CChHHHH
Confidence 7899998654333379999999999999999998876663 4555553
No 5
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=83.82 E-value=0.31 Score=41.28 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.3
Q ss_pred chhhhcc---CCCCccccCCCCcchHHH
Q psy15764 343 SSIRAIT---SPPLSLSCSLDSLHEREV 367 (469)
Q Consensus 343 ~alca~~---~p~l~~~~d~~s~~~~~~ 367 (469)
+|+|||| +|++ |||++|+.++.
T Consensus 39 ~af~aLih~~~P~l---id~~~l~~~~~ 63 (116)
T 1wyl_A 39 LALCALVYRLQPGL---LEPSELQGLGA 63 (116)
T ss_dssp HHHHHHHHHHCTTS---CCCSSGGGCCH
T ss_pred HHHHHHHHHHCcCC---CCHHHhccCCH
Confidence 7999998 9999 99999987543
No 6
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=81.48 E-value=0.28 Score=41.20 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.3
Q ss_pred chhhhcc---CCCCccccCCCCcchHHH
Q psy15764 343 SSIRAIT---SPPLSLSCSLDSLHEREV 367 (469)
Q Consensus 343 ~alca~~---~p~l~~~~d~~s~~~~~~ 367 (469)
+|+|||| +|++ |||++|+.++.
T Consensus 35 ~af~aLih~~~P~l---id~~~l~~~~~ 59 (109)
T 1bkr_A 35 MAFNALIHKHRPDL---IDFDKLKKSNA 59 (109)
T ss_dssp HHHHHHHHHHCGGG---CCGGGCCTTCH
T ss_pred HHHHHHHHHHCcCC---CCHHHcCcCCH
Confidence 7999998 9999 99999987554
No 7
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=81.38 E-value=0.38 Score=41.64 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=19.0
Q ss_pred chhhhcc---CCCCccccCCCCcchHHH
Q psy15764 343 SSIRAIT---SPPLSLSCSLDSLHEREV 367 (469)
Q Consensus 343 ~alca~~---~p~l~~~~d~~s~~~~~~ 367 (469)
+|+|||| +|++ |||++|+.++.
T Consensus 39 ~af~aLih~~~P~l---id~~~l~~~~~ 63 (128)
T 2d87_A 39 MAFCALVHNFFPEA---FDYGQLSPQNR 63 (128)
T ss_dssp HHHHHHHHHHCTTT---SCSTTSCSSCH
T ss_pred HHHHHHHHHHCcCc---CCHHHcCccCH
Confidence 7999999 9999 99999986543
No 8
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=79.58 E-value=0.4 Score=41.34 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.7
Q ss_pred chhhhcc---CCCCccccCCCCcchHH
Q psy15764 343 SSIRAIT---SPPLSLSCSLDSLHERE 366 (469)
Q Consensus 343 ~alca~~---~p~l~~~~d~~s~~~~~ 366 (469)
+|+|||| +|++ |||++|..++
T Consensus 39 ~Af~aLih~~~P~l---id~~~l~~~~ 62 (127)
T 1wyq_A 39 LAFNAIVHKHRPDL---LDFESLKKCN 62 (127)
T ss_dssp HHHHHHHHHHCTTT---CCTTTSCSSC
T ss_pred HHHHHHHHHHCcCc---CCHHHhCcCC
Confidence 7999998 9999 9999998654
No 9
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.31 E-value=0.39 Score=40.84 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.4
Q ss_pred chhhhcc---CCCCccccCCCCcchHHH
Q psy15764 343 SSIRAIT---SPPLSLSCSLDSLHEREV 367 (469)
Q Consensus 343 ~alca~~---~p~l~~~~d~~s~~~~~~ 367 (469)
+|+|||| +|++ |||++|+.++.
T Consensus 41 ~af~aLi~~~~P~l---id~~~l~~~~~ 65 (119)
T 2d89_A 41 LSFCAILHHFRPDL---IDYKSLNPQDI 65 (119)
T ss_dssp HHHHHHHHHHCTTT---SCGGGCCTTCS
T ss_pred HHHHHHHHHHCcCc---CChhhhcccCH
Confidence 7999998 9999 99999987554
No 10
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=73.61 E-value=0.37 Score=41.04 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=19.7
Q ss_pred chhhhcc---CCCCccccCCCCcchHHHh
Q psy15764 343 SSIRAIT---SPPLSLSCSLDSLHEREVR 368 (469)
Q Consensus 343 ~alca~~---~p~l~~~~d~~s~~~~~~~ 368 (469)
+|+|||| +|++ |||++|+..+..
T Consensus 40 ~af~aLih~~~P~l---id~~~l~~~~~~ 65 (118)
T 1bhd_A 40 LAFNAVLHRHKPDL---FSWDKVVKMSPI 65 (118)
T ss_dssp HHHHHHHHHHCGGG---SCHHHHHHSCHH
T ss_pred HHHHHHHHHHCcCc---CCHHHhCcCCHH
Confidence 7999998 9999 999999875543
No 11
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=47.00 E-value=4.8 Score=37.86 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=19.5
Q ss_pred cchhhhcc---CCCCccccCCCCcchHHH
Q psy15764 342 ESSIRAIT---SPPLSLSCSLDSLHEREV 367 (469)
Q Consensus 342 ~~alca~~---~p~l~~~~d~~s~~~~~~ 367 (469)
-+|+|||| +|++ |||+++..++.
T Consensus 171 G~a~~aLi~~~~P~~---id~~~l~~~~~ 196 (254)
T 1wku_A 171 GLALCALIHRHRPDL---IDYAKLRKDDP 196 (254)
T ss_dssp SHHHHHHHHHHCTTS---CCGGGCCTTCH
T ss_pred HHHHHHHHHHHCCCc---ccccccCcCCH
Confidence 37999998 9999 99999987553
No 12
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=45.70 E-value=3.7 Score=35.20 Aligned_cols=19 Identities=37% Similarity=0.877 Sum_probs=16.9
Q ss_pred cccccCCCCccccccccch
Q psy15764 163 FAVNHYGQSDVAMFDFTSM 181 (469)
Q Consensus 163 FA~Nh~GqpDVamFDFTSm 181 (469)
.++|.||.-||+.||||+-
T Consensus 79 ~S~~ryG~~Evs~f~FtT~ 97 (98)
T 1oww_A 79 ISIQQYGHQEVTRFDFTTT 97 (98)
T ss_dssp EEEESSSCEEEEEEEEEEC
T ss_pred EEeeccCcccceEEEEEec
Confidence 4899999999999999863
No 13
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=44.29 E-value=5.5 Score=38.30 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=19.4
Q ss_pred chhhhcc---CCCCcccc-CCCCcchHHHh
Q psy15764 343 SSIRAIT---SPPLSLSC-SLDSLHEREVR 368 (469)
Q Consensus 343 ~alca~~---~p~l~~~~-d~~s~~~~~~~ 368 (469)
+|+|||| +|++ | ||++|++++..
T Consensus 199 ~af~aLi~~~~P~l---i~d~~~l~~~~~~ 225 (272)
T 3hoc_A 199 RALGALVDSCAPGL---CPDWDSWDASKPV 225 (272)
T ss_dssp HHHHHHHHHHSTTS---STTGGGSCTTCHH
T ss_pred HHHHHHHHHhCccc---ccchhhcCccCHH
Confidence 7999998 9999 9 99999865543
No 14
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=42.94 E-value=8.9 Score=35.23 Aligned_cols=46 Identities=26% Similarity=0.435 Sum_probs=36.0
Q ss_pred EEeccCccC--CCcccCCccccccccccccHHHHHHHHhcCCCCchhhhH
Q psy15764 200 MTLVGDSLL--EPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLA 247 (469)
Q Consensus 200 v~LVGDsLl--EPFWP~GtG~aRGFLsa~DaaWmvr~~~~G~~~plevLA 247 (469)
|.||||.-+ -|| .|-|++-|+..|...+|.+.....|..+..+.|+
T Consensus 313 v~LiGDAAH~~~P~--~GqG~n~ai~DA~~La~~L~~~~~~~~~~~~aL~ 360 (412)
T 4hb9_A 313 VTLLGDAIHNMTPM--TGSGANTALRDALLLTQKLASVASGHEELVKAIS 360 (412)
T ss_dssp EEECTHHHHCSSCC--SSSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred EEEEEcccccCCCc--hhhHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHH
Confidence 789999854 455 6999999999999999999998777433344564
No 15
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=39.76 E-value=17 Score=32.91 Aligned_cols=46 Identities=28% Similarity=0.475 Sum_probs=32.5
Q ss_pred EEeccCc--cCCCcccCCccccccccccccHHHHHHHH-hcCCCCchhhhHh
Q psy15764 200 MTLVGDS--LLEPFWPTGSGCARGFLSSMDACWAIRSW-AAGILNPIEVLAE 248 (469)
Q Consensus 200 v~LVGDs--LlEPFWP~GtG~aRGFLsa~DaaWmvr~~-~~G~~~plevLAE 248 (469)
+.||||+ .+.|+ .|-|+.-++.+|.-+|+.+... ..|. ...+.|+.
T Consensus 279 v~lvGDAA~~~~P~--~G~Gi~~A~~~g~~~A~~i~~~l~~~~-~~~~~L~~ 327 (397)
T 3oz2_A 279 LMLVGDAARLIDPI--TGGGIANAIVSGMYAAQVTKEAIESND-YSPQMMQK 327 (397)
T ss_dssp EEECGGGGTCSCTT--TCCCHHHHHHHHHHHHHHHHHHHHHTC-CSHHHHHH
T ss_pred EEEcccccccCCCC--cchhHHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHH
Confidence 6789997 56777 5888888888888888777665 4453 33445543
No 16
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=37.09 E-value=8.4 Score=35.85 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=19.1
Q ss_pred chhhhcc---CCCCcccc-CCCCcchHHHh
Q psy15764 343 SSIRAIT---SPPLSLSC-SLDSLHEREVR 368 (469)
Q Consensus 343 ~alca~~---~p~l~~~~-d~~s~~~~~~~ 368 (469)
+|+|||| +|++ | ||+++++++..
T Consensus 172 ~a~~aLi~~~~P~~---i~~~~~l~~~~~~ 198 (245)
T 2wa7_A 172 KALGALVDSCAPGL---CPDWESWDPQKPV 198 (245)
T ss_dssp HHHHHHHHHHSTTS---STTGGGSCTTCHH
T ss_pred HHHHHHHHHHCccc---cccccccCcccHH
Confidence 7999998 9999 9 99998765543
No 17
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=36.66 E-value=8.6 Score=37.92 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=19.6
Q ss_pred chhhhcc---CCCCcccc-CCCCcchHHHh
Q psy15764 343 SSIRAIT---SPPLSLSC-SLDSLHEREVR 368 (469)
Q Consensus 343 ~alca~~---~p~l~~~~-d~~s~~~~~~~ 368 (469)
+|+|||| +|++ | |+++|+.++..
T Consensus 169 ~af~aLi~~~~P~~---~~d~~~l~~~~~~ 195 (347)
T 4b7l_A 169 KALGALVDSCAPGL---CPDWESWDPQKPV 195 (347)
T ss_dssp HHHHHHHHHHSTTS---STTGGGSCTTCHH
T ss_pred HHHHHHHHHhCCcc---ccchhhcCcCCHH
Confidence 7999998 9999 8 99999876654
No 18
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=35.81 E-value=12 Score=34.28 Aligned_cols=17 Identities=41% Similarity=0.706 Sum_probs=15.2
Q ss_pred cceeeEEEecCCCcccc
Q psy15764 20 QYEFNVLVGADGKRNTL 36 (469)
Q Consensus 20 ~yEFdVlIgAdG~rn~l 36 (469)
..++|+||||||.++++
T Consensus 152 ~~~adlvVgADG~~S~v 168 (412)
T 4hb9_A 152 HENVDVLVGADGSNSKV 168 (412)
T ss_dssp EEEESEEEECCCTTCHH
T ss_pred EEEeeEEEECCCCCcch
Confidence 56899999999999876
No 19
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=29.06 E-value=78 Score=29.82 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=29.0
Q ss_pred EEeccCccCCCcccCCccccccccccccHHHHHHHH
Q psy15764 200 MTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSW 235 (469)
Q Consensus 200 v~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~~ 235 (469)
|.||||.-.---=-.|-|+.-|+..|...||.+...
T Consensus 316 v~LiGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~ 351 (398)
T 2xdo_A 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADG 351 (398)
T ss_dssp EEECTHHHHCCCCTTSCSHHHHHHHHHHHHHHHHSC
T ss_pred EEEEeehhccCCCccCccHHHHHHHHHHHHHHHHhc
Confidence 789999875433337999999999999999999763
No 20
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=28.80 E-value=34 Score=29.78 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=18.4
Q ss_pred cccchhhhcc---CCCCccccCCC-----CcchHH
Q psy15764 340 QSESSIRAIT---SPPLSLSCSLD-----SLHERE 366 (469)
Q Consensus 340 q~~~alca~~---~p~l~~~~d~~-----s~~~~~ 366 (469)
+.-+++|+|| +|++ ||++ +|+++|
T Consensus 38 ~dG~~~l~Ll~~i~P~~---vd~~lv~~~~L~~~d 69 (124)
T 1wjo_A 38 SSSLAVVDLIDAIQPGC---INYDLVKSGNLTEDD 69 (124)
T ss_dssp GGTHHHHHHHHHHSTTS---CCTTTSCCSSCCHHH
T ss_pred hhhHHHHHHHHHHCcCc---cCHHHhcCCCCCHHH
Confidence 4447889987 9999 9999 665554
No 21
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=28.28 E-value=29 Score=32.53 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=31.2
Q ss_pred EEeccCc--cCCCcccCCccccccccccccHHHHHHHHhcC
Q psy15764 200 MTLVGDS--LLEPFWPTGSGCARGFLSSMDACWAIRSWAAG 238 (469)
Q Consensus 200 v~LVGDs--LlEPFWP~GtG~aRGFLsa~DaaWmvr~~~~G 238 (469)
+.||||+ .+.|+ .|.|+.-++.+|.-+|+.+..+..|
T Consensus 290 v~lvGDAa~~~~P~--~G~G~~~A~~~a~~la~~l~~~~~~ 328 (421)
T 3nix_A 290 FVLTGNATEFLDPI--FSSGATFAMESGSKGGKLAVQFLKG 328 (421)
T ss_dssp EEECGGGTCBCCST--TCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCc--ccccHHHHHHHHHHHHHHHHHHhcC
Confidence 6789996 55676 6999999999999999999988766
No 22
>3kq0_A Alpha-1-acid glycoprotein 1; plasma protein, polymorphism, acute phase protein, secreted, pyrrolidone carboxylic acid, lipocalin; 1.80A {Homo sapiens} PDB: 3apu_A* 3apv_A* 3apw_A* 3apx_A*
Probab=26.92 E-value=22 Score=30.87 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=17.9
Q ss_pred HHHHHhhhhcCCCcccccccc
Q psy15764 80 KFFKDLYAETGIDLENIVYYK 100 (469)
Q Consensus 80 ~FF~~L~~~tGIDLENIVYYK 100 (469)
.=|+++.+..||+.+||+|+-
T Consensus 139 e~F~~~a~~~G~~~~~ii~~~ 159 (192)
T 3kq0_A 139 GEFYEALDCLRIPKSDVVYTD 159 (192)
T ss_dssp HHHHHHHHHHTCCGGGCEECC
T ss_pred HHHHHHHHHCCCCHHHEEEcc
Confidence 447788899999999999984
No 23
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=26.60 E-value=7.9 Score=37.76 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=18.1
Q ss_pred chhhhcc---CCCCccccCCCCcchHH
Q psy15764 343 SSIRAIT---SPPLSLSCSLDSLHERE 366 (469)
Q Consensus 343 ~alca~~---~p~l~~~~d~~s~~~~~ 366 (469)
+|+|||| +|++ |||++|...+
T Consensus 221 ~af~aLI~~~~P~l---id~~~l~~~~ 244 (296)
T 3f7p_A 221 RLFNAIIHRHKPLL---IDMNKVYRQT 244 (296)
T ss_dssp HHHHHHHHHHCGGG---CCHHHHTTSC
T ss_pred HHHHHHHHHHCcCc---cCHHHcCccc
Confidence 7899998 9999 9999887643
No 24
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=26.13 E-value=30 Score=33.53 Aligned_cols=40 Identities=30% Similarity=0.455 Sum_probs=28.8
Q ss_pred cccccccccchhHHhhHHHHHHhhhhcCCCccccccccCCcee
Q psy15764 63 AEARVEEISGVAFIFNQKFFKDLYAETGIDLENIVYYKDDTHY 105 (469)
Q Consensus 63 aEakVeEISGVA~IfNQ~FF~~L~~~tGIDLENIVYYKddTHY 105 (469)
...+|--++|+|. .++||+.| ++.|+++.--..|.|--+|
T Consensus 225 ~~~~v~a~aGIgn--P~~F~~~L-~~~g~~i~~~~~fpDHh~f 264 (315)
T 4ehx_A 225 KEREVIAFSGLGD--NGQFRKVL-KNLGIKVKEFMSFPDHYDY 264 (315)
T ss_dssp TTCCEEEEESSTH--HHHHHHHH-HHHTCCEEEEEECCTTCCC
T ss_pred hhhhhhhhhhcCC--cHHHHHHH-HHcCCceeeeEecCChhhh
Confidence 3567888999993 37788665 6899998776777774333
No 25
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=25.56 E-value=10 Score=35.04 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=18.1
Q ss_pred chhhhcc---CCCCccccCCCCcchHH
Q psy15764 343 SSIRAIT---SPPLSLSCSLDSLHERE 366 (469)
Q Consensus 343 ~alca~~---~p~l~~~~d~~s~~~~~ 366 (469)
+|+|||| +|++ ||++++...+
T Consensus 165 ~a~~aLi~~~~P~~---i~~~~l~~~~ 188 (245)
T 1sh5_A 165 RLFNAIIHRHKPML---IDMNKVYRQT 188 (245)
T ss_dssp HHHHHHHHTTCTTT---CCHHHHHHSC
T ss_pred HHHHHHHHHHCCCC---CCHHHcccCC
Confidence 7999998 9999 9999887654
No 26
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=25.33 E-value=35 Score=31.96 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=34.7
Q ss_pred EEeccCccCCCcccCCccccccccccccHHHHHHHHhc-CCCCchhhhH
Q psy15764 200 MTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAA-GILNPIEVLA 247 (469)
Q Consensus 200 v~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~~~~-G~~~plevLA 247 (469)
|.||||+-.---=-.|.|+.-|+.+|...||.+..... | ....+.|+
T Consensus 288 v~lvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~~~~~-~~~~~~l~ 335 (399)
T 2x3n_A 288 VAMLGDAIHNVHPITGQGMNLAIEDASALADALDLALRDA-CALEDALA 335 (399)
T ss_dssp EEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHHHTTS-SCHHHHHH
T ss_pred EEEEechhccCCCcccccHHHHHHHHHHHHHHHHhhhccc-chHHHHHH
Confidence 78999986654334799999999999999999988753 3 23344553
No 27
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=24.97 E-value=25 Score=27.98 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=23.9
Q ss_pred EEeccCccCCCcccCCccccccccccccHHHHHHHHhcC
Q psy15764 200 MTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAG 238 (469)
Q Consensus 200 v~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~~~~G 238 (469)
|.|+||.+ .|.|+.-++.++..+|+.|.+.-++
T Consensus 297 v~l~GDa~------~g~gv~~A~~sG~~aA~~I~~~L~~ 329 (336)
T 3kkj_A 297 IYVCGDWC------LSGRVEGAWLSGQEAARRLLEHLQL 329 (336)
T ss_dssp EEECCGGG------TTSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEeccc------CCcCHHHHHHHHHHHHHHHHHHhhc
Confidence 56789975 3667777788888888887766543
No 28
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=23.68 E-value=38 Score=32.86 Aligned_cols=37 Identities=27% Similarity=0.190 Sum_probs=29.6
Q ss_pred EEeccCccCCCcccCCccccccccccccHHHHHHHHh
Q psy15764 200 MTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWA 236 (469)
Q Consensus 200 v~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~~~ 236 (469)
+.||||+-.---=-+|.|+.-|+.+|.-+||.+....
T Consensus 284 v~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~~~l 320 (453)
T 3atr_A 284 IIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAF 320 (453)
T ss_dssp EEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCcccCCCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 6799998654333379999999999999999998753
No 29
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=23.51 E-value=34 Score=34.19 Aligned_cols=78 Identities=13% Similarity=0.105 Sum_probs=44.9
Q ss_pred eeeEEEecCCCcccc--cCccceeeccceeeeeEEEecCCC-------cccc-cccccccchhHHhhHHHHHHhhh---h
Q psy15764 22 EFNVLVGADGKRNTL--EGFKRKEFRGKLAIAITANFINKK-------TEAE-ARVEEISGVAFIFNQKFFKDLYA---E 88 (469)
Q Consensus 22 EFdVlIgAdG~rn~l--~GF~rkEfRGKLAIgITaNFiN~~-------T~aE-akVeEISGVA~IfNQ~FF~~L~~---~ 88 (469)
+-+.|||+|=..... +|= ..-.+.-..|++|+.-... ..++ .+.|-|..+.-++-..+ +..++ .
T Consensus 155 ~~tmiiG~DV~H~~~~~~g~--~~~~~pSiaavVaS~d~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L-~~~~~~~~~ 231 (388)
T 2yha_A 155 GKTMVVGYDVTHPTNLAAGQ--SPASAPSIVGLVSTIDQHLGQWPAMVWNNPHGQESMTEQFTDKFKTRL-ELWRSNPAN 231 (388)
T ss_dssp SCEEEEEEEEECSCCCSSSS--CCTTSCEEEEEEECCSTTCCCCCEEEEEETTTHHHHHHHHHHHHHHHH-HHHHHSGGG
T ss_pred CCEEEEEEEEecccccCCCC--cCCCCCEEEEEEEEcCCCCCEEEEEEEEcCCCcccHHHHHHHHHHHHH-HHHHHhhhh
Confidence 468999997555431 220 0112466788888842111 1233 55566666554444333 23344 6
Q ss_pred cCCCccccccccCC
Q psy15764 89 TGIDLENIVYYKDD 102 (469)
Q Consensus 89 tGIDLENIVYYKdd 102 (469)
+|.=.++||||+|-
T Consensus 232 ~~~~P~rIiiyRDG 245 (388)
T 2yha_A 232 NRSLPENILIFRDG 245 (388)
T ss_dssp TTCCCSEEEEEEES
T ss_pred cCCCCceEEEEecC
Confidence 89999999999874
No 30
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=23.25 E-value=41 Score=34.59 Aligned_cols=47 Identities=23% Similarity=0.403 Sum_probs=36.8
Q ss_pred EEeccCccCCCcccCCccccccccccccHHHHHHHHhcCCCCchhhhH
Q psy15764 200 MTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLA 247 (469)
Q Consensus 200 v~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~~~~G~~~plevLA 247 (469)
|.||||.-.---=-.|-|+.-|+..|...+|.+.....|. .+.++|.
T Consensus 324 v~LvGDAAH~~~P~~GqG~n~gl~DA~~La~~La~~~~g~-~~~~lL~ 370 (570)
T 3fmw_A 324 VLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRGW-GSEELLD 370 (570)
T ss_dssp EEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHH
T ss_pred EEEEEecceecCCCcCcCHhHHHHHHHHHHHHHHHHHcCC-CcHHHHH
Confidence 7789999654333389999999999999999998876663 5666765
No 31
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=22.93 E-value=37 Score=33.98 Aligned_cols=47 Identities=21% Similarity=0.342 Sum_probs=36.7
Q ss_pred EEeccCccCCCcccCCccccccccccccHHHHHHHHhcCCCCchhhhH
Q psy15764 200 MTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLA 247 (469)
Q Consensus 200 v~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~~~~G~~~plevLA 247 (469)
|.|+||.-+---=-.|-|++-|+-.|+..+|.+.....|. .+.++|.
T Consensus 279 v~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~~~g~-~~~~~L~ 325 (500)
T 2qa1_A 279 VILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGT-ATEELLD 325 (500)
T ss_dssp EEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHTTS-SCHHHHH
T ss_pred EEEEEccccCCCCccccchhhhHHHHHHHHHHHHHHHcCC-CChHHHH
Confidence 7899999755433479999999999999999998876663 4555664
No 32
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=22.04 E-value=55 Score=30.08 Aligned_cols=45 Identities=27% Similarity=0.432 Sum_probs=32.5
Q ss_pred EEeccCcc--CCCcccCCccccccccccccHHHHHHHHh-cCCCCchhhhH
Q psy15764 200 MTLVGDSL--LEPFWPTGSGCARGFLSSMDACWAIRSWA-AGILNPIEVLA 247 (469)
Q Consensus 200 v~LVGDsL--lEPFWP~GtG~aRGFLsa~DaaWmvr~~~-~G~~~plevLA 247 (469)
+.||||+- +.|+ .|.|+.-++.+|.-+||.+.... .|. ...+.|+
T Consensus 279 v~liGDAa~~~~P~--~G~G~~~a~~~a~~la~~l~~~~~~~~-~~~~~l~ 326 (397)
T 3cgv_A 279 LMLVGDAARLIDPI--TGGGIANAIVSGMYAAQVTKEAIESND-YSPQMMQ 326 (397)
T ss_dssp EEECGGGGTCSCTT--TCCCHHHHHHHHHHHHHHHHHHHHHTC-CSHHHHH
T ss_pred EEEEEccccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHcCC-ccHHHHH
Confidence 77899975 4554 68999999999999999888765 442 3344554
No 33
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=20.90 E-value=50 Score=32.82 Aligned_cols=47 Identities=30% Similarity=0.417 Sum_probs=34.7
Q ss_pred EEeccCcc--CCCcccCCccccccccccccHHHHHHHHhcCCCCchhhhHh
Q psy15764 200 MTLVGDSL--LEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLAE 248 (469)
Q Consensus 200 v~LVGDsL--lEPFWP~GtG~aRGFLsa~DaaWmvr~~~~G~~~plevLAE 248 (469)
|.||||+- +.|+ +|.|+.-++.+|.-+||.+.....|..+..+.|++
T Consensus 298 vvlvGDAAh~~~P~--~GqG~~~Al~dA~~La~~L~~~l~~~~~~~~aL~~ 346 (512)
T 3e1t_A 298 MALVGDAACFVDPV--FSSGVHLATYSALLVARAINTCLAGEMSEQRCFEE 346 (512)
T ss_dssp EEECGGGTEECCST--TCCHHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred EEEEechhhcCCCc--cccCHHHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 88999985 5665 69999999998888899998876553333344443
No 34
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=20.50 E-value=37 Score=27.99 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=16.0
Q ss_pred HHHhhhhcCCCcccccccc
Q psy15764 82 FKDLYAETGIDLENIVYYK 100 (469)
Q Consensus 82 F~~L~~~tGIDLENIVYYK 100 (469)
|.++.++.|||.+||++-.
T Consensus 126 f~~~~~~~G~~~~~ii~~~ 144 (151)
T 1e5p_A 126 LVQFAHEKKIPVENILNIL 144 (151)
T ss_dssp HHHHHHHTTCCGGGEEECG
T ss_pred HHHHHHHcCCCHHHEEECC
Confidence 6677889999999999853
No 35
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=20.47 E-value=57 Score=30.69 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=0.0
Q ss_pred CcccceEeecCCCCCCCcceeeEEEecCCCcccc
Q psy15764 3 EKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 36 (469)
Q Consensus 3 ~~~GWrA~v~P~~hpvs~yEFdVlIgAdG~rn~l 36 (469)
+..||++.+.-.. .+++|+||+|||.+..+
T Consensus 154 ~~~~v~v~~~~g~----~~~a~~vV~AdG~~S~v 183 (407)
T 3rp8_A 154 DADGVTVWFTDGS----SASGDLLIAADGSHSAL 183 (407)
T ss_dssp ETTEEEEEETTSC----EEEESEEEECCCTTCSS
T ss_pred cCCcEEEEEcCCC----EEeeCEEEECCCcChHH
No 36
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=20.39 E-value=57 Score=30.74 Aligned_cols=30 Identities=23% Similarity=0.260 Sum_probs=0.0
Q ss_pred CcccceEeecCCCCCCCcceeeEEEecCCCcccc
Q psy15764 3 EKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTL 36 (469)
Q Consensus 3 ~~~GWrA~v~P~~hpvs~yEFdVlIgAdG~rn~l 36 (469)
+..||.+.+.-.. .+++|+||+|||.+..+
T Consensus 126 ~~~~v~v~~~~g~----~~~ad~vV~AdG~~S~v 155 (397)
T 2vou_A 126 DSETVQMRFSDGT----KAEANWVIGADGGASVV 155 (397)
T ss_dssp CSSCEEEEETTSC----EEEESEEEECCCTTCHH
T ss_pred cCCEEEEEECCCC----EEECCEEEECCCcchhH
No 37
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=20.13 E-value=1.1e+02 Score=24.70 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=54.4
Q ss_pred cCCCHHHHHHHHHHHhcccCCCCCCCccccccc-CCC-Cccccccccchhhhhhhhhhhhh---cCceEEEEeccCccCC
Q psy15764 135 DNIDKEALKEYARQAADFSTEYNLPHLEFAVNH-YGQ-SDVAMFDFTSMYAAENACRFLER---NGHKLLMTLVGDSLLE 209 (469)
Q Consensus 135 ~NV~~~aL~~yAreAAdFst~~~Lp~ldFA~Nh-~Gq-pDVamFDFTSm~aaenAa~v~er---~G~kLLv~LVGDsLlE 209 (469)
.+++.+.|.++-... .. +-.+.+..+. .|. ...|...|.+.-.|+.|..-+.. .|+.|-|.+.-..--.
T Consensus 52 ~~~~~~~l~~~F~~~---G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 52 TTVDEVQLRQLFERY---GP---IESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125 (139)
T ss_dssp TTCCHHHHHHHHHHH---SC---EEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCC
T ss_pred CCCCHHHHHHHHHhc---CC---eEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 456677777665442 21 1123333222 122 23688999999999998776554 5889999988777666
Q ss_pred CcccCCcccccccc
Q psy15764 210 PFWPTGSGCARGFL 223 (469)
Q Consensus 210 PFWP~GtG~aRGFL 223 (469)
+=++-|.|-.+|||
T Consensus 126 ~~~~~~~g~g~g~l 139 (139)
T 1u6f_A 126 PGIAGAVGDGNGYL 139 (139)
T ss_dssp CCSSCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCC
Confidence 77777777778886
No 38
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=20.09 E-value=28 Score=32.77 Aligned_cols=26 Identities=8% Similarity=0.167 Sum_probs=19.2
Q ss_pred chhhhcc---CCCCc------cccCCCCcchHHHh
Q psy15764 343 SSIRAIT---SPPLS------LSCSLDSLHEREVR 368 (469)
Q Consensus 343 ~alca~~---~p~l~------~~~d~~s~~~~~~~ 368 (469)
+|+|||| +|+.. ..||++++++++..
T Consensus 200 ~a~~aLi~~~~P~~~~~~~~~l~~~~~~~~~~~~~ 234 (275)
T 1aoa_A 200 KAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDL 234 (275)
T ss_dssp HHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHH
T ss_pred HHHHHHHHHHCCCccccccccccccccCCCccCHH
Confidence 7999998 99821 13899998876543
No 39
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=20.08 E-value=25 Score=35.47 Aligned_cols=47 Identities=26% Similarity=0.268 Sum_probs=36.1
Q ss_pred EEeccCccCCCcccCCccccccccccccHHHHHHHHhcCCCCchhhhH
Q psy15764 200 MTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLA 247 (469)
Q Consensus 200 v~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~~~~G~~~plevLA 247 (469)
|.|+||.-+---=-.|-|+.-|+-.|+..+|.+.....|. .+.++|.
T Consensus 311 v~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~-a~~~lL~ 357 (549)
T 2r0c_A 311 VFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLRGW-AGPGLLA 357 (549)
T ss_dssp EEECGGGTEECCCGGGHHHHHHHHHHHHHHHHHHHHHHTC-SCTTTTH
T ss_pred EEEEccccccCCCccCCccccccHHHHHHHHHHHHHHcCC-CCHHHHH
Confidence 7889999765443479999999999999999998876663 3445553
No 40
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=20.04 E-value=25 Score=37.29 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.3
Q ss_pred chhhhcc---CCCCccccCCCCcchHH
Q psy15764 343 SSIRAIT---SPPLSLSCSLDSLHERE 366 (469)
Q Consensus 343 ~alca~~---~p~l~~~~d~~s~~~~~ 366 (469)
+|+|||| +|++ |||++++.++
T Consensus 153 ~~~~~li~~~~p~~---~~~~~~~~~~ 176 (863)
T 1sjj_A 153 LGFCALIHRHRPEL---IDYGKLRKDD 176 (863)
T ss_dssp HHHHHHHHTTCCSS---SCSGGGGSCC
T ss_pred HHHHHHHHHhCCCC---cChhhCCCCC
Confidence 7999998 9999 9999987554
Done!