RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15764
(469 letters)
>gnl|CDD|218184 pfam04632, FUSC, Fusaric acid resistance protein family. This
family includes a conserved region found in two proteins
associated with fusaric acid resistance,from
Burkholderia cepacia and Klebsiella oxytoca. These
proteins are likely to be membrane transporter proteins.
Length = 649
Score = 36.1 bits (84), Expect = 0.036
Identities = 32/157 (20%), Positives = 45/157 (28%), Gaps = 25/157 (15%)
Query: 198 LLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWA-IRSWAAGILNPIEVLAERESIYRIL 256
L LV S L F+P G + + A AA L A RE+ R+
Sbjct: 140 LCAGLV--SAL--FFPRSVG--PALRARLRAWLRDAARLAADALAGAGGAAAREARLRLA 193
Query: 257 GQTTPENLHRDHASYSLDPTTRYPN-------LNQR--TVLPV------QVKGLYDTDDP 301
R HA++ + R LN R +L + L
Sbjct: 194 ADILALEALRSHAAFE---SPRGRARNRALRRLNARMLALLARLSALARLLAALRAAGAA 250
Query: 302 STLELYLKAPSTLLAPGADQPKKRRRRDLLHSPRRGL 338
+ L L + LA R L + R
Sbjct: 251 AALAALLDELAAALAAAGLPAAVAALRARLAALRPEA 287
>gnl|CDD|216380 pfam01235, Na_Ala_symp, Sodium:alanine symporter family.
Length = 415
Score = 33.6 bits (77), Expect = 0.23
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 156 YNLPHLE------FAVNH----YGQSDVA----MFDFTSMYA----AENACRFLERNGHK 197
N+ L+ A + +G + VA +F F+++ A AE +L R+G +
Sbjct: 282 TNVETLKGAQLTQKAFDTLIGGFGATFVAIALLLFAFSTIIANYYYAETNLAYLVRSGPR 341
Query: 198 LLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGI---LNPIEVLAERESIYR 254
+ L F+ G + S+ WA+ GI N I +L + Y
Sbjct: 342 GVALYRLAYLAAVFY--------GTVLSLTLVWALADIVMGIMALPNLIAILLLSKVAYE 393
Query: 255 IL 256
L
Sbjct: 394 AL 395
>gnl|CDD|173103 PRK14640, PRK14640, hypothetical protein; Provisional.
Length = 152
Score = 29.6 bits (66), Expect = 1.9
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 291 QVKGLYDTDDPSTLELYLKAPSTLLAPGADQP 322
QV + D +DP T E YL+ S PG D+P
Sbjct: 58 QVGAIMDVEDPITEEYYLEVSS----PGLDRP 85
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 30.3 bits (69), Expect = 2.6
Identities = 35/132 (26%), Positives = 48/132 (36%), Gaps = 19/132 (14%)
Query: 76 IFNQKFFK---DLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGVILNDFADTARLL 132
FNQ FK + Y E GID E+I + + ++ K LL +L++ +
Sbjct: 395 FFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLS---LLDE--ECLFPK 449
Query: 133 SQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAAENACRFLE 192
D E L + F EF + HY DV Y A FLE
Sbjct: 450 GTDETFLEKLNNKLKSNNAFYPAKKNAPTEFTIKHYA-GDV-------TYDARG---FLE 498
Query: 193 RNGHKLLMTLVG 204
+N L LV
Sbjct: 499 KNKDVLSPELVS 510
>gnl|CDD|183941 PRK13277, PRK13277,
5-formaminoimidazole-4-carboxamide-1-(beta)-D-
ribofuranosyl 5'-monophosphate synthetase-like protein;
Provisional.
Length = 366
Score = 29.9 bits (68), Expect = 3.2
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 25 VLVGADGKRNTLE-GF----KRKEFRGKLAIAITANFINKKTEAEARVEE-ISGVAFIFN 78
V+V + LE GF ++F K I A I+++ AR+EE + G F FN
Sbjct: 155 VIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIGAHFNFN 214
Query: 79 QKFF 82
+F
Sbjct: 215 --YF 216
>gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional.
Length = 410
Score = 29.1 bits (65), Expect = 5.1
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Query: 181 MYAAENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFL-SSMDACWAIRSWAAGI 239
+Y A ER+G + ++ +L + F GC G++ +S D +RS+A G
Sbjct: 221 LYGARGG-GIAERDGLMDRIDMIQGTLAKAF-----GCLGGYIAASADLIDFVRSFAPGF 274
Query: 240 -----LNPIEVLAERESIYRILGQTTPENLHRDHAS 270
L P +I + T + H+D +
Sbjct: 275 IFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVA 310
>gnl|CDD|202731 pfam03705, CheR_N, CheR methyltransferase, all-alpha domain. CheR
proteins are part of the chemotaxis signaling mechanism
in bacteria. CheR methylates the chemotaxis receptor at
specific glutamate residues. CheR is an
S-adenosylmethionine- dependent methyltransferase.
Length = 57
Score = 26.3 bits (59), Expect = 6.0
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 79 QKFFKDLYAETGIDLENIVYYKDDT 103
++F + LY TGIDL + YK
Sbjct: 6 ERFRELLYKRTGIDLTD---YKRAL 27
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 29.2 bits (65), Expect = 6.1
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 21/155 (13%)
Query: 258 QTTPENLHRDHASYSLDPTTRYPN-LNQRTVLPVQVKGLYDTDDPSTLELYLKAPSTLLA 316
+ EN ++ T P+ L T L V D+ S+ + ST A
Sbjct: 37 EQNIENDGQNSPETQSPLTELQPSPLPPNTTLDAPVSDSQG-DESSSEQQPQNPNSTEPA 95
Query: 317 PGADQPKKRRRRDLL------------HSPRRGLRQSESSIRAITSPPLSLSCSLDSLHE 364
P PKKRRRR H R GL + E + A+ + +S+ +DSL E
Sbjct: 96 P---PPKKRRRRKRFFTEINANPAFRRHRVRGGLGK-EVDVEALIA--ISVGFPVDSLTE 149
Query: 365 REVRAHSGIKTGGLDEDISGRVRN-LEEKFRGGVS 398
E+ A+ GG ++ VRN + ++R VS
Sbjct: 150 EEIEANVVSTIGGTEQANYIVVRNHILARWRSNVS 184
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 28.2 bits (64), Expect = 8.8
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 412 KIEKTDWNVKEIEKKIE----ENKYGKSTKPHSERVPK 445
+I + NVK+ E+ I+ + + K K + K
Sbjct: 176 EIIEKGLNVKQTEELIKKLLEKPEKPKKKKKRRKGFSK 213
>gnl|CDD|216018 pfam00606, Glycoprotein_B, Herpesvirus Glycoprotein B. This family
of proteins contains a transmembrane region.
Length = 711
Score = 28.7 bits (65), Expect = 8.9
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 302 STLELYLKAPSTLLAPGADQPKKRRRRDLLHSPRRGLRQSESSI 345
S ELY + + ++RRRR + + ++ SSI
Sbjct: 348 SLAELYNLELARTNSTPPPTSRRRRRRSADSATGGNVIETTSSI 391
>gnl|CDD|235218 PRK04081, PRK04081, hypothetical protein; Provisional.
Length = 207
Score = 27.8 bits (62), Expect = 9.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 120 VILNDFADTARLLSQDNIDKEALKEYAR 147
V+L D T R+LSQ+ IDK +E A+
Sbjct: 74 VVLRDLDGTERVLSQEEIDKLIKEEEAK 101
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.393
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,631,766
Number of extensions: 2471342
Number of successful extensions: 2392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2388
Number of HSP's successfully gapped: 22
Length of query: 469
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 369
Effective length of database: 6,502,202
Effective search space: 2399312538
Effective search space used: 2399312538
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)