RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15764
(469 letters)
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 428 bits (1102), Expect = e-147
Identities = 171/301 (56%), Positives = 216/301 (71%), Gaps = 2/301 (0%)
Query: 2 EEKIGWRAVVSPPDH-PVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKK 60
+ GWRA + P ++ YEF+VL+ A G + EGF +E RGKLAI ITANF+N +
Sbjct: 197 RKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTIREMRGKLAIGITANFVNGR 256
Query: 61 TEAEARVEEISGVAFIFNQKFFKDLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGV 120
T E +V EISGVA I+NQKFF+ L TGIDLENIVYYKD+THYFVMTAKKQ LL GV
Sbjct: 257 TVEETQVPEISGVARIYNQKFFQSLLKATGIDLENIVYYKDETHYFVMTAKKQCLLRLGV 316
Query: 121 ILNDFADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTS 180
+ D ++T +LL + N+ EAL+ +AR AADF+T L LEFA + G+ DVA FDFTS
Sbjct: 317 LRQDLSETDQLLGKANVVPEALQRFARAAADFATHGKLGKLEFAQDARGRPDVAAFDFTS 376
Query: 181 MYAAENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGIL 240
M AE++ R E++G +LL+ LVGD L+EPFWP G+G ARGFL++ DA W ++ WA G
Sbjct: 377 MMRAESSARVQEKHGARLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAWMVKRWAEG-A 435
Query: 241 NPIEVLAERESIYRILGQTTPENLHRDHASYSLDPTTRYPNLNQRTVLPVQVKGLYDTDD 300
P+EVLAERES+Y++L QT+PEN+HR+ A Y LDP TRYPNLN R V P QV+ LYD D
Sbjct: 436 GPLEVLAERESLYQLLSQTSPENMHRNVAQYGLDPATRYPNLNLRAVTPNQVQDLYDMMD 495
Query: 301 P 301
Sbjct: 496 K 496
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 2e-10
Identities = 84/486 (17%), Positives = 142/486 (29%), Gaps = 166/486 (34%)
Query: 15 DHPVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTEAEARVEEISGVA 74
D P + E LVG +F G +++ E + +
Sbjct: 52 DEPTTPAE---LVG--------------KFLG---------YVSSLVEPSKVGQFDQVLN 85
Query: 75 FIFNQKFFKDLYAETGIDLENIVYYKDDTHYFVMT----AKKQSLLDKGVILNDFADTAR 130
+ F++ Y LE +D H + K +I N AR
Sbjct: 86 LCLTE--FENCY------LEG-----NDIHALAAKLLQENDTTLVKTKELIKNYIT--AR 130
Query: 131 LLSQDNIDKE---ALKEYARQ-AADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAAEN 186
++++ DK+ AL + A + F GQ + T Y
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQL---VAI----FG----GQGN------TDDY---- 169
Query: 187 ACRFLE-RNGHKLLMTLVGD------SLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGI 239
F E R+ ++ LVGD L T + F ++ I W +
Sbjct: 170 ---FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN----ILEW---L 219
Query: 240 LNPIEVLAERESIYRILGQTTPENLHRDHASYSLDP------------TTRYPNLNQRTV 287
NP TP+ + S P T + +
Sbjct: 220 ENP---------------SNTPDKDYLLSIPISC-PLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 288 LP------VQVKGLY--------DTDDPSTLELYLKAPSTLLAPGADQPKKRRRRDLLHS 333
+GL D+ + S KA + L G R
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWE-SFFVSVRKAITVLFFIGV--------RCYEAY 314
Query: 334 PRRGLRQS--ESSIR---AITSPPLSLS-CSLDSLHE--REVRAHSGIKTGGLDEDISGR 385
P L S E S+ + SP LS+S + + + + + +H + +
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH-----LPAGKQVEIS 369
Query: 386 VRNLEEKFRGGVSPGRKPKDLYRAIGKIEKTDWNVKEIEKKIEENKYGKSTKPHSERVPK 445
+ N + V G P+ LY + K K +++++ P SER K
Sbjct: 370 LVNGAKNL---VVSGP-PQSLYGLNLTLRK----AK-APSGLDQSR-----IPFSERKLK 415
Query: 446 WSKQQF 451
+S +F
Sbjct: 416 FSN-RF 420
Score = 38.9 bits (90), Expect = 0.004
Identities = 32/226 (14%), Positives = 58/226 (25%), Gaps = 95/226 (42%)
Query: 7 W-RAVVSPPD-HPVSQYEFNVL--VGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTE 62
W RA D H Y F++L V + T+ F G+ I N+
Sbjct: 1646 WNRA-----DNHFKDTYGFSILDIVINNPVNLTIH------FGGEKGKRIRENYS----- 1689
Query: 63 AEARVEEISGVAFIFNQKFFKDLYAETGIDLENIVYYKDD-----THY-----FVMT-AK 111
A + E + +K FK++ + + + T + +M A
Sbjct: 1690 --AMIFETIVDGKLKTEKIFKEI----NEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 112 KQSLLDKGVILND----------------------FADTARLLSQ--------------- 134
+ L KG+I D ++
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 135 ---------------DNIDKEALKEYARQAADFSTE------YNLP 159
+ +EAL+ + + YN+
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Score = 32.3 bits (73), Expect = 0.42
Identities = 49/270 (18%), Positives = 80/270 (29%), Gaps = 87/270 (32%)
Query: 168 YGQSDVA--MFDFTSMYAAENACRFLERNGHKLLMTLVGDSLLE-----P------FWPT 214
Y S A +++ A + G S+L+ P F
Sbjct: 1636 YKTSKAAQDVWN--------RADNHFKDT--------YGFSILDIVINNPVNLTIHFGGE 1679
Query: 215 GSGCARGFLSSM--DACWAIRSWAAGILNPIEVLAERESIYRILGQTTPENLHRDHASYS 272
R S+M + + I I E + Y + L
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEIN---EHSTSYTFRS---EKGL-------- 1725
Query: 273 LDPT--TRYPNLNQRTVLPVQV--------KGLYDTDDP----STL-ELY--LKAPSTLL 315
L T T Q + ++ KGL D S L E Y L + + ++
Sbjct: 1726 LSATQFT------QPALTLMEKAAFEDLKSKGLIPADATFAGHS-LGE-YAALASLADVM 1777
Query: 316 APGADQPKKRRRR-DLLHS--PRRGLRQSESSIRAITSPPLSLSCSLDSLHEREVRAHSG 372
+ R + PR L +S + AI ++ S S ++L + V G
Sbjct: 1778 -SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL--QYVVERVG 1834
Query: 373 IKTGGLDE---D--------ISGRVRNLEE 391
+TG L E +G +R L+
Sbjct: 1835 KRTGWLVEIVNYNVENQQYVAAGDLRALDT 1864
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 4e-06
Identities = 78/533 (14%), Positives = 145/533 (27%), Gaps = 175/533 (32%)
Query: 73 VAFIFNQKFFKDLYAETGIDLENIVYYKDDTHYFVMTAKKQS--------LLDKGV-ILN 123
+ +F F + + D+ + K++ + +M+ S LL K ++
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 124 DFADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYA 183
F + L + Y + TE P + + Y + +++ ++A
Sbjct: 81 KFVEEV--LRIN---------YKFLMSPIKTEQRQPSMMTRM--YIEQRDRLYNDNQVFA 127
Query: 184 AENACRF------------LERNGHKLL--M------TLVGDSLLEP----------FWP 213
N R L + L+ + + D L FW
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 214 TGSGCAR---------GFLSSMDACWAIRS-WAAGILNPIEVLAERESIYRILGQTTPEN 263
C L +D W RS ++ I I + R+L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR--RLL------- 238
Query: 264 LHRDHASYSL-------DP--------------TTRYPNL------NQRTVLPV--QVKG 294
+ + + L + TTR+ + T + +
Sbjct: 239 KSKPYEN-CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 295 LYDTDDPSTLELYLKAPSTLLAPGADQPKKRRRRDLLHSPRR----GLRQSESSIRA--- 347
L + L LK L D P R L +PRR +
Sbjct: 298 LTPDE---VKSLLLKY---LDCRPQDLP----REVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 348 --ITSPPLS--LSCSLDSLHEREVRAH----------SGIKTGGL----DEDISGRVRNL 389
+ L+ + SL+ L E R + I T L + I V +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 390 EEKFRGGVSPGRKPK-------DLYRAIGKIEKTDWNVKEIEKKIEENKY--------GK 434
K ++PK +Y +++ N + + I + Y
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYL---ELKVKLENEYALHRSIVD-HYNIPKTFDSDD 463
Query: 435 STKP------------H------SERVPKWSKQQFEDKFSAVERKLRKKDLNC 469
P H ER+ + + +F +E+K+R
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF--LEQKIRHDSTAW 514
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.066
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 9/28 (32%)
Query: 291 QVKGLYDTDDPSTLELYLKAPSTLLAPG 318
+K L ++L+LY A + AP
Sbjct: 21 ALKKL-----QASLKLY--ADDS--APA 39
Score = 31.5 bits (70), Expect = 0.27
Identities = 4/29 (13%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 335 RRGLRQSESSIRAI---TSPPLSLSCSLD 360
++ L++ ++S++ ++P L++ +++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 30.7 bits (68), Expect = 0.54
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 30/56 (53%)
Query: 111 KKQSLLDKGVILNDFADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVN 166
+KQ+L K +L + +LK YA +A P L A+
Sbjct: 18 EKQAL--K-----------KLQA-------SLKLYADDSA--------PAL--AIK 43
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.35
Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 13/69 (18%)
Query: 385 RVRNLEEKFRGGVSPGRKPKDLYRAIGKIEKTDWNVKEIEKKIEENKYGKSTKPHSERVP 444
R++ L+ + + +R K + +WN + +++E+NK + + +
Sbjct: 97 RLQELDAA-------SKVMEQEWREKAKKDLEEWN-QRQSEQVEKNK--INNRIADK--- 143
Query: 445 KWSKQQFED 453
+ +Q D
Sbjct: 144 AFYQQPDAD 152
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 29.7 bits (68), Expect = 1.7
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 55 NFINKKTEAEARVEEISGVAFIF------NQKFFKDLYAETGID 92
N +N K EA AR+E+I+G F +++ ++ I
Sbjct: 37 NLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPIT 80
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 30.1 bits (68), Expect = 1.9
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 55 NFINKKTEAEARVEEISGVAFIF------NQKFFKDLYAETGID 92
N N ++ AR+E ++ F ++K + ++ E ID
Sbjct: 43 NLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKID 86
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN
protein structure initiative; 2.30A {Vibrio
parahaemolyticus}
Length = 586
Score = 30.2 bits (67), Expect = 1.9
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 3/116 (2%)
Query: 125 FADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAA 184
A +RL D++ + A E+N +L + A+ ++ A
Sbjct: 259 LAAASRLGVHGEYDQQKYRNAAENGYWHLKEHNTQYLNDGEENIIDEYCALLASVELFKA 318
Query: 185 ENACRFLE---RNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAA 237
R+LE +L+ + D ++ FW +R + + +A +
Sbjct: 319 TKETRYLEESRLWAQRLVARQMSDEQIQHFWSANQDGSRPYFHAAEAGLPTIALCE 374
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 29.7 bits (68), Expect = 2.2
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 55 NFINKKTEAEARVEEISGVAFIF------NQKFFKDLYAETGID 92
N N K +E + G F N+ ++ + ID
Sbjct: 32 NLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAID 75
>3h1n_A Probable glutathione S-transferase; APC84167, bordetella
bronchisepti structural genomics, PSI-2, protein
structure initiative; 1.83A {Bordetella bronchiseptica
RB50}
Length = 252
Score = 29.1 bits (65), Expect = 2.9
Identities = 19/145 (13%), Positives = 36/145 (24%), Gaps = 25/145 (17%)
Query: 85 LYAETGIDLENIVYYKDDTHYFVMTAKKQS-------LLDKGV-------ILNDFADTAR 130
I + + M ++ + L+ G+ IL
Sbjct: 40 ALEAGKIPYRDRAREPGEDMLDDMRRRRDTPPFAPPYLVADGMTIAQTANILLFLGVEHG 99
Query: 131 LLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAAENAC-- 188
L D + + + AD + E + H A Y + + + E
Sbjct: 100 LAPPDRAGRLWVNQLQLTIADLTAEAHDVHHPVAAGLYYEDQQDVALRRAADFRETRMPK 159
Query: 189 ------RFLERNGHKLLMTLVGDSL 207
+ L+R G L
Sbjct: 160 FMQYFEQALDRPGGWL---TDMGRW 181
>3nua_A Phosphoribosylaminoimidazole-succinocarboxamide S; alpha-beta
structure, csgid, ligase, center for structural G of
infectious diseases; HET: ADP AMP CIT; 1.40A
{Clostridium perfringens}
Length = 238
Score = 28.8 bits (65), Expect = 2.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 14/47 (29%)
Query: 83 KDLYAETGIDLEN--IVYYKDDTHYFVMTA----KKQSLLDKGVILN 123
K +YA D E+ IV+YKDD TA KK + KGV+ N
Sbjct: 17 KKIYA---TDKEDMVIVHYKDD-----ATAFNGEKKAQIESKGVLNN 55
>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; PURC,
ADE2, ADE1, nucleotide complex, octahedral magnesium
coordination; HET: ADP; 2.00A {Escherichia coli} PDB:
2gqs_A*
Length = 237
Score = 28.4 bits (64), Expect = 3.8
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 10/45 (22%)
Query: 83 KDLYAETGIDLENIVYYKDDTHYFVMTA----KKQSLLDKGVILN 123
K +Y T ++ +++D +A + + KG++ N
Sbjct: 13 KTVY-STENPDLLVLEFRND-----TSAGDGARIEQFDRKGMVNN 51
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase;
zinc-binding motif, trans-editing enzyme, structural
genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP:
b.43.3.6 d.67.1.2
Length = 216
Score = 28.3 bits (64), Expect = 4.8
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 60 KTEAEARVEEISGVAFIFNQKFFKDLYAETG 90
EA+ RV EI A + +Q F Y G
Sbjct: 15 LKEAKGRVLEIRDNAILLDQTIF---YPTGG 42
>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide S; ADP complex,
structural genomics, NPPSFA; HET: ADP; 1.75A
{Geobacillus kaustophilus}
Length = 244
Score = 28.0 bits (63), Expect = 5.2
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 14/50 (28%)
Query: 83 KDLYAETGIDLEN--IVYYKDDTHYFVMTA----KKQSLLDKGVILNDFA 126
K +YA D + V YKD TA KK ++ KG + N+ +
Sbjct: 16 KKIYA---TDEPDVLWVEYKDS-----ATAFNGEKKATIAGKGRLNNEIS 57
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
structural genomics, saicar synthetase, PSI, protein
structure initiative; 2.20A {Thermotoga maritima} SCOP:
d.143.1.1
Length = 230
Score = 28.0 bits (63), Expect = 6.1
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 12/45 (26%)
Query: 83 KDLYAETGIDLENIVYYKDDTHYFVMTA----KKQSLLDKGVILN 123
K + ++ +KDD TA K L KG I
Sbjct: 8 KIVKV---TGDYALLEFKDDI-----TAGDGLKHDVLTGKGSICA 44
>2yib_D RNA-directed RNA polymerase; transferase, reverse transcriptase,
IPNV; 3.80A {Infectious pancreatic necrosis virus}
Length = 770
Score = 28.1 bits (61), Expect = 8.8
Identities = 27/144 (18%), Positives = 42/144 (29%), Gaps = 17/144 (11%)
Query: 215 GSGCARGFLSSMDACWAIRSWAAGILNPIEVLAERESIYRILGQTTPENL-HRDHASYSL 273
GSG G L+ + A + + P V E + ++L QT P N +
Sbjct: 160 GSGSYSGQLNRLLAMKGVATGRNPNKTPKTVGYTNEQLAKLLEQTLPINTPKHEDPDLRW 219
Query: 274 DPTTRYPNLNQRTVLPVQVKGLYDTDDPSTLELYLKAPSTLLAPGADQPKKRRRRDLLHS 333
P+ + T D ST + YL + + G K + +
Sbjct: 220 APS----------------WLINYTGDLSTDKSYLPHVTIKSSAGLPYIGKTKGDTTAEA 263
Query: 334 PRRGLRQSESSIRAITSPPLSLSC 357
RA TS
Sbjct: 264 LVLADSFIRDLGRAATSADPEAGV 287
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ehrlich
chaffeensis; 1.80A {Ehrlichia chaffeensis str}
Length = 263
Score = 27.5 bits (61), Expect = 9.1
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 83 KDLYAETGIDLENIVYYKDDTHYFVMTA----KKQSLLDKGVILNDFA 126
K ++ T LE I ++KD+ +TA K + +KG++ N +
Sbjct: 34 KIIF-ATLNPLEVIQHFKDE-----ITAFNNKKAAIIHEKGILNNYIS 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.393
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,328,620
Number of extensions: 457141
Number of successful extensions: 1127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1118
Number of HSP's successfully gapped: 36
Length of query: 469
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 372
Effective length of database: 3,993,456
Effective search space: 1485565632
Effective search space used: 1485565632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)